BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2526

Length=75
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609663|ref|NP_217042.1|  hypothetical protein Rv2526 [Mycoba...   141    3e-32
gi|289762693|ref|ZP_06522071.1|  LOW QUALITY PROTEIN: conserved h...   139    1e-31
gi|313659459|ref|ZP_07816339.1|  antitoxin [Mycobacterium tubercu...   112    1e-23
gi|294994366|ref|ZP_06800057.1|  hypothetical protein Mtub2_07578...  94.7    4e-18
gi|326904140|gb|EGE51073.1|  antitoxin [Mycobacterium tuberculosi...  94.7    4e-18
gi|333992735|ref|YP_004525349.1|  hypothetical protein JDM601_409...  94.0    7e-18
gi|336120114|ref|YP_004574892.1|  hypothetical protein MLP_44750 ...  63.9    8e-09
gi|298531197|ref|ZP_07018598.1|  Protein of unknown function DUF2...  35.0    3.7  
gi|163741026|ref|ZP_02148419.1|  penicillin-binding protein 1A [P...  35.0    4.0  
gi|163739754|ref|ZP_02147162.1|  Penicillin-binding protein 1A [P...  34.3    6.9  
gi|335034130|ref|ZP_08527491.1|  hypothetical protein AGRO_1470 [...  33.9    7.6  
gi|159184572|ref|NP_354029.2|  hypothetical protein Atu1005 [Agro...  33.5    9.9  


>gi|15609663|ref|NP_217042.1| hypothetical protein Rv2526 [Mycobacterium tuberculosis H37Rv]
 gi|15842060|ref|NP_337097.1| hypothetical protein MT2601.2 [Mycobacterium tuberculosis CDC1551]
 gi|31793707|ref|NP_856200.1| hypothetical protein Mb2555 [Mycobacterium bovis AF2122/97]
 61 more sequence titles
 Length=75

 Score =  141 bits (356),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 75/75 (100%), Positives = 75/75 (100%), Gaps = 0/75 (0%)

Query  1   MTVKRTTIELDEDLVRAAQAVTGETLRATVERALQQLVAAAAEQAAARRRRIVDHLAHAG  60
           MTVKRTTIELDEDLVRAAQAVTGETLRATVERALQQLVAAAAEQAAARRRRIVDHLAHAG
Sbjct  1   MTVKRTTIELDEDLVRAAQAVTGETLRATVERALQQLVAAAAEQAAARRRRIVDHLAHAG  60

Query  61  THVDADVLLSEQAWR  75
           THVDADVLLSEQAWR
Sbjct  61  THVDADVLLSEQAWR  75


>gi|289762693|ref|ZP_06522071.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium 
tuberculosis GM 1503]
 gi|289710199|gb|EFD74215.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium 
tuberculosis GM 1503]
Length=77

 Score =  139 bits (351),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 74/74 (100%), Positives = 74/74 (100%), Gaps = 0/74 (0%)

Query  1   MTVKRTTIELDEDLVRAAQAVTGETLRATVERALQQLVAAAAEQAAARRRRIVDHLAHAG  60
           MTVKRTTIELDEDLVRAAQAVTGETLRATVERALQQLVAAAAEQAAARRRRIVDHLAHAG
Sbjct  1   MTVKRTTIELDEDLVRAAQAVTGETLRATVERALQQLVAAAAEQAAARRRRIVDHLAHAG  60

Query  61  THVDADVLLSEQAW  74
           THVDADVLLSEQAW
Sbjct  61  THVDADVLLSEQAW  74


>gi|313659459|ref|ZP_07816339.1| antitoxin [Mycobacterium tuberculosis KZN V2475]
Length=61

 Score =  112 bits (281),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 60/61 (99%), Positives = 61/61 (100%), Gaps = 0/61 (0%)

Query  15  VRAAQAVTGETLRATVERALQQLVAAAAEQAAARRRRIVDHLAHAGTHVDADVLLSEQAW  74
           +RAAQAVTGETLRATVERALQQLVAAAAEQAAARRRRIVDHLAHAGTHVDADVLLSEQAW
Sbjct  1   MRAAQAVTGETLRATVERALQQLVAAAAEQAAARRRRIVDHLAHAGTHVDADVLLSEQAW  60

Query  75  R  75
           R
Sbjct  61  R  61


>gi|294994366|ref|ZP_06800057.1| hypothetical protein Mtub2_07578 [Mycobacterium tuberculosis 
210]
Length=66

 Score = 94.7 bits (234),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 50/61 (82%), Positives = 51/61 (84%), Gaps = 0/61 (0%)

Query  15  VRAAQAVTGETLRATVERALQQLVAAAAEQAAARRRRIVDHLAHAGTHVDADVLLSEQAW  74
           +   Q       RATVERALQQLVAAAAEQAAARRRRIVDHLAHAGTHVDADVLLSEQAW
Sbjct  6   ILCGQPRPSPGTRATVERALQQLVAAAAEQAAARRRRIVDHLAHAGTHVDADVLLSEQAW  65

Query  75  R  75
           R
Sbjct  66  R  66


>gi|326904140|gb|EGE51073.1| antitoxin [Mycobacterium tuberculosis W-148]
Length=60

 Score = 94.7 bits (234),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 50/59 (85%), Positives = 50/59 (85%), Gaps = 0/59 (0%)

Query  17  AAQAVTGETLRATVERALQQLVAAAAEQAAARRRRIVDHLAHAGTHVDADVLLSEQAWR  75
             Q       RATVERALQQLVAAAAEQAAARRRRIVDHLAHAGTHVDADVLLSEQAWR
Sbjct  2   CGQPRPSPGTRATVERALQQLVAAAAEQAAARRRRIVDHLAHAGTHVDADVLLSEQAWR  60


>gi|333992735|ref|YP_004525349.1| hypothetical protein JDM601_4095 [Mycobacterium sp. JDM601]
 gi|333488703|gb|AEF38095.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=73

 Score = 94.0 bits (232),  Expect = 7e-18, Method: Compositional matrix adjust.
 Identities = 48/73 (66%), Positives = 58/73 (80%), Gaps = 0/73 (0%)

Query  3   VKRTTIELDEDLVRAAQAVTGETLRATVERALQQLVAAAAEQAAARRRRIVDHLAHAGTH  62
           +KRTTIELDE+LVR AQ+VTG TLR+TVE AL++L+A A  +   RRRRI +HLA AG  
Sbjct  1   MKRTTIELDEELVRKAQSVTGSTLRSTVESALRRLIAEAQGEDDERRRRITEHLASAGKQ  60

Query  63  VDADVLLSEQAWR  75
           VD D LLS+QAWR
Sbjct  61  VDTDALLSDQAWR  73


>gi|336120114|ref|YP_004574892.1| hypothetical protein MLP_44750 [Microlunatus phosphovorus NM-1]
 gi|334687904|dbj|BAK37489.1| hypothetical protein MLP_44750 [Microlunatus phosphovorus NM-1]
Length=75

 Score = 63.9 bits (154),  Expect = 8e-09, Method: Compositional matrix adjust.
 Identities = 40/75 (54%), Positives = 47/75 (63%), Gaps = 0/75 (0%)

Query  1   MTVKRTTIELDEDLVRAAQAVTGETLRATVERALQQLVAAAAEQAAARRRRIVDHLAHAG  60
           M VKRTTIELD  L   A  VTG TLRATVE+ L+ L+A +  +   R      HLA AG
Sbjct  1   MAVKRTTIELDVTLAAQAVDVTGSTLRATVEQGLRLLIAQSRLEEQHRLDLFNRHLAGAG  60

Query  61  THVDADVLLSEQAWR  75
             VD +VLLS +AWR
Sbjct  61  ESVDLEVLLSGEAWR  75


>gi|298531197|ref|ZP_07018598.1| Protein of unknown function DUF2191 [Desulfonatronospira thiodismutans 
ASO3-1]
 gi|298509220|gb|EFI33125.1| Protein of unknown function DUF2191 [Desulfonatronospira thiodismutans 
ASO3-1]
Length=66

 Score = 35.0 bits (79),  Expect = 3.7, Method: Compositional matrix adjust.
 Identities = 19/36 (53%), Positives = 26/36 (73%), Gaps = 1/36 (2%)

Query  3   VKRTTIELDEDLVRAAQAVTG-ETLRATVERALQQL  37
           +KRT + LDE+LVR  Q +TG  T RA ++ ALQ+L
Sbjct  1   MKRTNVVLDEELVRECQVLTGIRTRRALIDYALQEL  36


>gi|163741026|ref|ZP_02148419.1| penicillin-binding protein 1A [Phaeobacter gallaeciensis 2.10]
 gi|161386017|gb|EDQ10393.1| penicillin-binding protein 1A [Phaeobacter gallaeciensis 2.10]
Length=833

 Score = 35.0 bits (79),  Expect = 4.0, Method: Composition-based stats.
 Identities = 20/67 (30%), Positives = 32/67 (48%), Gaps = 0/67 (0%)

Query  9    ELDEDLVRAAQAVTGETLRATVERALQQLVAAAAEQAAARRRRIVDHLAHAGTHVDADVL  68
            +L ED         G T+RAT++  +Q   A+A      +  R   +    G  +DA+ L
Sbjct  282  QLSEDFGEGEFFTGGFTVRATIDEEMQTEAASALRGGLEKYDRSRGNWRGTGVTLDAEAL  341

Query  69   LSEQAWR  75
             SE++WR
Sbjct  342  TSEESWR  348


>gi|163739754|ref|ZP_02147162.1| Penicillin-binding protein 1A [Phaeobacter gallaeciensis BS107]
 gi|161386984|gb|EDQ11345.1| Penicillin-binding protein 1A [Phaeobacter gallaeciensis BS107]
Length=727

 Score = 34.3 bits (77),  Expect = 6.9, Method: Compositional matrix adjust.
 Identities = 20/67 (30%), Positives = 31/67 (47%), Gaps = 0/67 (0%)

Query  9    ELDEDLVRAAQAVTGETLRATVERALQQLVAAAAEQAAARRRRIVDHLAHAGTHVDADVL  68
            +L ED         G T+RAT++  +Q   A A      +  R   +    G  +DA+ L
Sbjct  282  QLSEDFGEGEFFTGGFTVRATIDEEMQTEAAVALRGGLEKYDRSRGNWRGTGVTLDAEAL  341

Query  69   LSEQAWR  75
             SE++WR
Sbjct  342  ASEESWR  348


>gi|335034130|ref|ZP_08527491.1| hypothetical protein AGRO_1470 [Agrobacterium sp. ATCC 31749]
 gi|333794448|gb|EGL65784.1| hypothetical protein AGRO_1470 [Agrobacterium sp. ATCC 31749]
Length=89

 Score = 33.9 bits (76),  Expect = 7.6, Method: Compositional matrix adjust.
 Identities = 19/35 (55%), Positives = 25/35 (72%), Gaps = 1/35 (2%)

Query  5   RTTIELDEDLVRAAQAVTG-ETLRATVERALQQLV  38
           RT IELD+ L+  A  +TG  T +ATVE+AL+ LV
Sbjct  15  RTNIELDDALIAEAMEITGLSTKKATVEKALRDLV  49


>gi|159184572|ref|NP_354029.2| hypothetical protein Atu1005 [Agrobacterium tumefaciens str. 
C58]
 gi|159139876|gb|AAK86814.2| conserved hypothetical protein [Agrobacterium tumefaciens str. 
C58]
Length=76

 Score = 33.5 bits (75),  Expect = 9.9, Method: Compositional matrix adjust.
 Identities = 19/35 (55%), Positives = 25/35 (72%), Gaps = 1/35 (2%)

Query  5   RTTIELDEDLVRAAQAVTG-ETLRATVERALQQLV  38
           RT IELD+ L+  A  +TG  T +ATVE+AL+ LV
Sbjct  2   RTNIELDDALIAEAMEITGLPTKKATVEKALRDLV  36



Lambda     K      H
   0.319    0.125    0.335 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 131059142040


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40