BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2528c
Length=306
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609665|ref|NP_217044.1| restriction system protein mrr [Myc... 613 7e-174
gi|167967329|ref|ZP_02549606.1| probable restriction system prot... 613 1e-173
gi|31793709|ref|NP_856202.1| restriction system protein mrr [Myc... 612 2e-173
gi|289746313|ref|ZP_06505691.1| restriction system protein mrr [... 611 4e-173
gi|121638411|ref|YP_978635.1| putative restriction system protei... 610 9e-173
gi|340627543|ref|YP_004745995.1| putative restriction system pro... 596 2e-168
gi|256826065|ref|YP_003150025.1| restriction endonuclease [Kytoc... 382 5e-104
gi|319950295|ref|ZP_08024215.1| restriction system protein mrr [... 361 9e-98
gi|163792392|ref|ZP_02186369.1| mrr restriction system protein [... 260 2e-67
gi|332704545|ref|ZP_08424633.1| restriction endonuclease [Desulf... 256 3e-66
gi|254470574|ref|ZP_05083978.1| mrr restriction system protein [... 256 4e-66
gi|119715822|ref|YP_922787.1| restriction endonuclease [Nocardio... 253 3e-65
gi|254514672|ref|ZP_05126733.1| restriction endonuclease [gamma ... 251 9e-65
gi|339484107|ref|YP_004695893.1| restriction endonuclease [Nitro... 251 1e-64
gi|288959542|ref|YP_003449883.1| restriction system protein [Azo... 250 2e-64
gi|333373834|ref|ZP_08465733.1| mrr restriction system protein [... 245 8e-63
gi|116749960|ref|YP_846647.1| restriction endonuclease [Syntroph... 244 1e-62
gi|159028005|emb|CAO87965.1| mrr [Microcystis aeruginosa PCC 7806] 243 2e-62
gi|254786397|ref|YP_003073826.1| Mrr restriction system protein ... 241 8e-62
gi|88601780|ref|YP_501958.1| restriction endonuclease [Methanosp... 241 1e-61
gi|300310547|ref|YP_003774639.1| 5-methylcytosine-specific restr... 240 2e-61
gi|166367573|ref|YP_001659846.1| Mrr restriction system protein ... 239 5e-61
gi|344200362|ref|YP_004784688.1| restriction endonuclease [Acidi... 238 1e-60
gi|17233148|ref|NP_490238.1| mrr restriction system protein [Nos... 237 1e-60
gi|34540717|ref|NP_905196.1| Mrr restriction system protein [Por... 237 2e-60
gi|75812373|ref|YP_319992.1| restriction endonuclease [Anabaena ... 237 2e-60
gi|188994846|ref|YP_001929098.1| putative Mrr restriction system... 237 2e-60
gi|297625533|ref|YP_003687296.1| restriction system protein [Pro... 235 8e-60
gi|222525259|ref|YP_002569730.1| restriction endonuclease [Chlor... 234 1e-59
gi|334146688|ref|YP_004509616.1| Mrr restriction system protein ... 234 1e-59
gi|163847411|ref|YP_001635455.1| restriction endonuclease [Chlor... 234 1e-59
gi|251771181|gb|EES51763.1| restriction endonuclease [Leptospiri... 234 2e-59
gi|153003951|ref|YP_001378276.1| restriction endonuclease [Anaer... 232 6e-59
gi|257058969|ref|YP_003136857.1| restriction endonuclease [Cyano... 231 1e-58
gi|254466305|ref|ZP_05079716.1| Mrr restriction system protein [... 230 2e-58
gi|218245921|ref|YP_002371292.1| restriction endonuclease [Cyano... 230 2e-58
gi|270157736|ref|ZP_06186393.1| Mrr restriction system protein [... 230 3e-58
gi|302343460|ref|YP_003807989.1| restriction endonuclease [Desul... 229 3e-58
gi|295696350|ref|YP_003589588.1| restriction endonuclease [Bacil... 229 4e-58
gi|344339026|ref|ZP_08769956.1| restriction endonuclease [Thioca... 228 7e-58
gi|320104887|ref|YP_004180478.1| restriction endonuclease [Isosp... 228 7e-58
gi|237755764|ref|ZP_04584368.1| Mrr restriction system protein [... 228 1e-57
gi|119471839|ref|ZP_01614172.1| methylated adenine and cytosine ... 228 1e-57
gi|338536845|ref|YP_004670179.1| restriction endonuclease [Myxoc... 226 3e-57
gi|323136815|ref|ZP_08071896.1| restriction endonuclease [Methyl... 226 3e-57
gi|336115221|ref|YP_004569988.1| restriction endonuclease [Bacil... 226 4e-57
gi|330997041|ref|ZP_08320903.1| restriction endonuclease [Parapr... 226 4e-57
gi|148358355|ref|YP_001249562.1| Mrr restriction system protein ... 225 5e-57
gi|339442916|ref|YP_004708921.1| hypothetical protein CXIVA_1852... 225 5e-57
gi|154245042|ref|YP_001416000.1| restriction endonuclease [Xanth... 225 7e-57
>gi|15609665|ref|NP_217044.1| restriction system protein mrr [Mycobacterium tuberculosis H37Rv]
gi|15842062|ref|NP_337099.1| Mrr restriction system protein [Mycobacterium tuberculosis CDC1551]
gi|148662365|ref|YP_001283888.1| restriction system protein Mrr [Mycobacterium tuberculosis H37Ra]
68 more sequence titles
Length=306
Score = 613 bits (1582), Expect = 7e-174, Method: Compositional matrix adjust.
Identities = 306/306 (100%), Positives = 306/306 (100%), Gaps = 0/306 (0%)
Query 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH
Sbjct 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP 120
WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP
Sbjct 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP 120
Query 121 VDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMG 180
VDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMG
Sbjct 121 VDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMG 180
Query 181 YGRAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGALLGK 240
YGRAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGALLGK
Sbjct 181 YGRAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGALLGK 240
Query 241 QGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLRLDE 300
QGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLRLDE
Sbjct 241 QGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLRLDE 300
Query 301 DFFDGL 306
DFFDGL
Sbjct 301 DFFDGL 306
>gi|167967329|ref|ZP_02549606.1| probable restriction system protein mrr [Mycobacterium tuberculosis
H37Ra]
Length=306
Score = 613 bits (1580), Expect = 1e-173, Method: Compositional matrix adjust.
Identities = 305/306 (99%), Positives = 306/306 (100%), Gaps = 0/306 (0%)
Query 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH
Sbjct 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP 120
WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP
Sbjct 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP 120
Query 121 VDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMG 180
VDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMG
Sbjct 121 VDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMG 180
Query 181 YGRAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGALLGK 240
YGRAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPK+HEFAGALLGK
Sbjct 181 YGRAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKMHEFAGALLGK 240
Query 241 QGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLRLDE 300
QGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLRLDE
Sbjct 241 QGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLRLDE 300
Query 301 DFFDGL 306
DFFDGL
Sbjct 301 DFFDGL 306
>gi|31793709|ref|NP_856202.1| restriction system protein mrr [Mycobacterium bovis AF2122/97]
gi|31619303|emb|CAD94741.1| PROBABLE RESTRICTION SYSTEM PROTEIN MRR [Mycobacterium bovis
AF2122/97]
Length=306
Score = 612 bits (1579), Expect = 2e-173, Method: Compositional matrix adjust.
Identities = 305/306 (99%), Positives = 306/306 (100%), Gaps = 0/306 (0%)
Query 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH
Sbjct 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP 120
WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP
Sbjct 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP 120
Query 121 VDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMG 180
VDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMG
Sbjct 121 VDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMG 180
Query 181 YGRAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGALLGK 240
YGRAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGALLGK
Sbjct 181 YGRAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGALLGK 240
Query 241 QGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLRLDE 300
QGDRGVYITTSSFSRGAR+EAERINARIELIDGARLAELLVRYRVGVQAVQTVELLRLDE
Sbjct 241 QGDRGVYITTSSFSRGARQEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLRLDE 300
Query 301 DFFDGL 306
DFFDGL
Sbjct 301 DFFDGL 306
>gi|289746313|ref|ZP_06505691.1| restriction system protein mrr [Mycobacterium tuberculosis 02_1987]
gi|289686841|gb|EFD54329.1| restriction system protein mrr [Mycobacterium tuberculosis 02_1987]
Length=306
Score = 611 bits (1576), Expect = 4e-173, Method: Compositional matrix adjust.
Identities = 305/306 (99%), Positives = 305/306 (99%), Gaps = 0/306 (0%)
Query 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
MTIPDAQTLMRPILAYLADGQAKS KDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH
Sbjct 1 MTIPDAQTLMRPILAYLADGQAKSGKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP 120
WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP
Sbjct 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP 120
Query 121 VDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMG 180
VDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMG
Sbjct 121 VDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMG 180
Query 181 YGRAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGALLGK 240
YGRAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGALLGK
Sbjct 181 YGRAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGALLGK 240
Query 241 QGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLRLDE 300
QGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLRLDE
Sbjct 241 QGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLRLDE 300
Query 301 DFFDGL 306
DFFDGL
Sbjct 301 DFFDGL 306
>gi|121638411|ref|YP_978635.1| putative restriction system protein mrr [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|224990905|ref|YP_002645592.1| putative restriction system protein [Mycobacterium bovis BCG
str. Tokyo 172]
gi|121494059|emb|CAL72537.1| Probable restriction system protein mrr [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|224774018|dbj|BAH26824.1| putative restriction system protein [Mycobacterium bovis BCG
str. Tokyo 172]
gi|341602449|emb|CCC65125.1| probable restriction system protein mrr [Mycobacterium bovis
BCG str. Moreau RDJ]
Length=306
Score = 610 bits (1573), Expect = 9e-173, Method: Compositional matrix adjust.
Identities = 305/306 (99%), Positives = 305/306 (99%), Gaps = 0/306 (0%)
Query 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH
Sbjct 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP 120
WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAH ERVDMAVLREFPSYIAFRERTKAKQP
Sbjct 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHLERVDMAVLREFPSYIAFRERTKAKQP 120
Query 121 VDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMG 180
VDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMG
Sbjct 121 VDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMG 180
Query 181 YGRAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGALLGK 240
YGRAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGALLGK
Sbjct 181 YGRAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGALLGK 240
Query 241 QGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLRLDE 300
QGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLRLDE
Sbjct 241 QGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLRLDE 300
Query 301 DFFDGL 306
DFFDGL
Sbjct 301 DFFDGL 306
>gi|340627543|ref|YP_004745995.1| putative restriction system protein MRR [Mycobacterium canettii
CIPT 140010059]
gi|340005733|emb|CCC44899.1| putative restriction system protein MRR [Mycobacterium canettii
CIPT 140010059]
Length=306
Score = 596 bits (1536), Expect = 2e-168, Method: Compositional matrix adjust.
Identities = 297/306 (98%), Positives = 301/306 (99%), Gaps = 0/306 (0%)
Query 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH
Sbjct 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP 120
WSLTHMSQAGLLDRP RG VQ+T TGRQVLKAHPERVD+AVLREFPSYIAFRERTKAKQP
Sbjct 61 WSLTHMSQAGLLDRPARGQVQITGTGRQVLKAHPERVDIAVLREFPSYIAFRERTKAKQP 120
Query 121 VDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMG 180
VDA AKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVI LLEAMG
Sbjct 121 VDAAAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIGLLEAMG 180
Query 181 YGRAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGALLGK 240
YGRAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGALLGK
Sbjct 181 YGRAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGALLGK 240
Query 241 QGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLRLDE 300
QGDRGVYITTSSFSRGARE+AERINARIELIDGARLAELLVRYRVGVQAVQTVEL+RLDE
Sbjct 241 QGDRGVYITTSSFSRGAREQAERINARIELIDGARLAELLVRYRVGVQAVQTVELVRLDE 300
Query 301 DFFDGL 306
DFFDGL
Sbjct 301 DFFDGL 306
>gi|256826065|ref|YP_003150025.1| restriction endonuclease [Kytococcus sedentarius DSM 20547]
gi|256689458|gb|ACV07260.1| restriction endonuclease [Kytococcus sedentarius DSM 20547]
Length=306
Score = 382 bits (980), Expect = 5e-104, Method: Compositional matrix adjust.
Identities = 198/306 (65%), Positives = 242/306 (80%), Gaps = 3/306 (0%)
Query 3 IPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVHWS 62
IPD QTLMRP+LA L DGQ + +D+ A ++ F LS+ E A+ LPSGR +RV W+
Sbjct 2 IPDFQTLMRPVLAELEDGQVHAVRDLRARLAITFQLSEAELAEKLPSGRSPVFTNRVGWA 61
Query 63 LTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAK--QP 120
TH+SQAGLL R RG ++T GRQVL+ HP+RVD+ VL EF +Y AFRERT+ + QP
Sbjct 62 TTHLSQAGLLAREGRGLYRLTQAGRQVLERHPDRVDVRVLDEFQAYRAFRERTREQEPQP 121
Query 121 VDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMG 180
AT R + + +PE+L+ A++ NRAAVEG++L+ AL LSPTGFEDLVI+LL MG
Sbjct 122 TLATTSRQTPPTSE-TPEELLANAISINRAAVEGDVLQAALGLSPTGFEDLVIQLLSRMG 180
Query 181 YGRAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGALLGK 240
YGRAG+VERTSA+GDAG+DGIISQDPLGLDRIYVQAKRYA ++T+ RP+IHEFAGALLGK
Sbjct 181 YGRAGSVERTSATGDAGVDGIISQDPLGLDRIYVQAKRYAEERTVDRPRIHEFAGALLGK 240
Query 241 QGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLRLDE 300
QGDRGV+ITTS+FS GA +EAERINARIELIDG RLA+LLV+Y VGVQ QT L RLDE
Sbjct 241 QGDRGVFITTSTFSGGAIQEAERINARIELIDGKRLAQLLVQYGVGVQEQQTAVLYRLDE 300
Query 301 DFFDGL 306
D+F+GL
Sbjct 301 DYFEGL 306
>gi|319950295|ref|ZP_08024215.1| restriction system protein mrr [Dietzia cinnamea P4]
gi|319436051|gb|EFV91251.1| restriction system protein mrr [Dietzia cinnamea P4]
Length=275
Score = 361 bits (926), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 183/277 (67%), Positives = 219/277 (80%), Gaps = 2/277 (0%)
Query 30 AAMSDEFGLSDDERAQMLPSGRQRTMYDRVHWSLTHMSQAGLLDRPTRGHVQVTDTGRQV 89
A+++D+FGL ER+Q++PSG+ RT +RV WSLTH+SQAG+++RP+RG V +TD GR +
Sbjct 1 ASIADQFGLDAQERSQLIPSGKARTFDNRVGWSLTHLSQAGVVERPSRGVVSITDEGRAI 60
Query 90 LKAHPERVDMAVLREFPSYIAFRERTKAKQPVDATAKRPSGDDVQVSPEDLIDAALAENR 149
L HP R+ + L E+PSY FR R K DA + S + +++P +L A+ NR
Sbjct 61 LARHPGRIGVRELNEYPSYREFRSRKKRAVEDDAQSDESSSE--ELTPSELAAQAVEINR 118
Query 150 AAVEGEILKKALTLSPTGFEDLVIRLLEAMGYGRAGAVERTSASGDAGIDGIISQDPLGL 209
AAVEGE+LK A LSP GFE+LVIRLLE MGYGRAG+VERTS SGDAG+DGIISQDPLGL
Sbjct 119 AAVEGEVLKSAHELSPAGFENLVIRLLEKMGYGRAGSVERTSFSGDAGVDGIISQDPLGL 178
Query 210 DRIYVQAKRYAVDQTIGRPKIHEFAGALLGKQGDRGVYITTSSFSRGAREEAERINARIE 269
DRIYVQAKRYA ++TI RP+IHEFAGALLGKQGDRGV+ITTS+FS GA EAERINARIE
Sbjct 179 DRIYVQAKRYAEERTIHRPRIHEFAGALLGKQGDRGVFITTSTFSAGAIAEAERINARIE 238
Query 270 LIDGARLAELLVRYRVGVQAVQTVELLRLDEDFFDGL 306
LIDG RLAELLV Y VGVQA QTV L RLDEDFF+ L
Sbjct 239 LIDGPRLAELLVAYGVGVQAEQTVTLYRLDEDFFESL 275
>gi|163792392|ref|ZP_02186369.1| mrr restriction system protein [alpha proteobacterium BAL199]
gi|159182097|gb|EDP66606.1| mrr restriction system protein [alpha proteobacterium BAL199]
Length=311
Score = 260 bits (664), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 133/311 (43%), Positives = 202/311 (65%), Gaps = 12/311 (3%)
Query 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
M IPD QTLM P+L A G+ + D ++D+ GLS ER ++LPSGRQR +++R+H
Sbjct 1 MAIPDYQTLMLPVLRLAAAGETR-VPDAAETIADDLGLSAAEREELLPSGRQRLLHNRIH 59
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP 120
W+ +M++AGL+D+P RG V++TG+Q+L PER+D+A L ++ + F +
Sbjct 60 WAKFYMNKAGLIDQPRRGRFVVSETGKQLLSTSPERIDVARLMQYQEFREFYTNAGTAKE 119
Query 121 VDA------TAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIR 174
VD A PS +PE+ I+AA + A+ GE+L++ L SP+ FE +++
Sbjct 120 VDGPPDQHQVAPSPSAGQ---TPEEQIEAAHRALQTALRGELLQRILQNSPSFFEQVIVD 176
Query 175 LLEAMGYGRA--GAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHE 232
LL AMGYG + A E+ +GD G+DG+I++D LGLDR+Y+QAKRY + ++GRP++
Sbjct 177 LLVAMGYGGSHRNAAEQLGRTGDGGVDGVINEDRLGLDRVYIQAKRYGPNVSVGRPEVQA 236
Query 233 FAGALLGKQGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQT 292
F G+L+G + V++TTS+FS+ A + A ++ RI LIDG RL +L++ Y VGV+ +T
Sbjct 237 FVGSLVGLGASKSVFVTTSTFSQHATDFARHLSQRIILIDGVRLGDLMIEYNVGVRVART 296
Query 293 VELLRLDEDFF 303
VE RLDEDFF
Sbjct 297 VEFKRLDEDFF 307
>gi|332704545|ref|ZP_08424633.1| restriction endonuclease [Desulfovibrio africanus str. Walvis
Bay]
gi|332554694|gb|EGJ51738.1| restriction endonuclease [Desulfovibrio africanus str. Walvis
Bay]
Length=299
Score = 256 bits (655), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 129/308 (42%), Positives = 203/308 (66%), Gaps = 15/308 (4%)
Query 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
M IPD QT+M P+L +DG+ +S+ + ++D F L+ ER ++LPSG+Q+ +RV
Sbjct 1 MPIPDFQTIMLPLLELSSDGKVRSSAEYRDTLADRFTLTPAEREELLPSGKQQIFSNRVS 60
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP 120
W+ ++ +AGLL +P RGH Q+T+ GR+ L+ P+R+++ L+++P + AFRE++ K+P
Sbjct 61 WASFYLQRAGLLTKPRRGHYQITERGREALRTRPQRINIEFLQQYPEFNAFREKSTDKKP 120
Query 121 VDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMG 180
V+ T +G+ +PE+ ++ A + R + EIL++ + +P FE LV+ LL MG
Sbjct 121 VEETR---TGE----TPEETLETAFQQMRGGLALEILEQVKSCTPQFFERLVVELLVGMG 173
Query 181 YG----RAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGA 236
YG AG SGD GIDGII +D LGLD IY+QAKR+ + T+GRP++ +F GA
Sbjct 174 YGGTMHDAGMA--VGKSGDEGIDGIIKEDRLGLDLIYLQAKRW--EGTVGRPEVQKFVGA 229
Query 237 LLGKQGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELL 296
L GK +GV+ITT +F++GA E A I++++ LIDG RLAEL++ + VGV T ++
Sbjct 230 LHGKHARKGVFITTGTFAQGAVEYAASIDSKVVLIDGKRLAELMIEFDVGVSTKATYQVK 289
Query 297 RLDEDFFD 304
R+D D+F+
Sbjct 290 RIDSDYFN 297
>gi|254470574|ref|ZP_05083978.1| mrr restriction system protein [Pseudovibrio sp. JE062]
gi|211960885|gb|EEA96081.1| mrr restriction system protein [Pseudovibrio sp. JE062]
Length=307
Score = 256 bits (653), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 133/305 (44%), Positives = 199/305 (66%), Gaps = 4/305 (1%)
Query 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
MTIPD QTLM P+L LA +A D++ ++ EF LSDD+ ++LPSG+ + + +R+H
Sbjct 1 MTIPDYQTLMLPVLR-LAANEAVRVVDLVKPIATEFLLSDDDLEELLPSGKGKRLNNRIH 59
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP 120
W+ T++S+AGLL+ P+RG+ TD G +VL + PER+D A L + + FR K
Sbjct 60 WAKTYLSKAGLLENPSRGYFLATDEGHKVLVSSPERIDNAFLTRYEKFQEFRAGGKETDE 119
Query 121 VDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMG 180
T SG D + +PE+ ID A RA++ ++L++ SP+ FE L+I L+ +MG
Sbjct 120 SIGTL-HLSGTDDKATPEEQIDNAYETLRASLGTDLLERISQNSPSFFEGLIIDLMMSMG 178
Query 181 YG--RAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGALL 238
YG A A + SGD G+DG+I +D LGLDR+Y+QAKRY + +GRP++ F G+L+
Sbjct 179 YGGSHASAARQLGRSGDGGVDGVIDEDRLGLDRVYLQAKRYKAENVVGRPEVQGFVGSLV 238
Query 239 GKQGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLRL 298
G +G+++TTSSFS+ AR+ AE + RI LIDGA L +L+V + VGV+ +T+ + R+
Sbjct 239 GLGATKGIFVTTSSFSKQARDYAEGLVQRIILIDGALLTKLMVEHGVGVRTSRTISIQRI 298
Query 299 DEDFF 303
DEDFF
Sbjct 299 DEDFF 303
>gi|119715822|ref|YP_922787.1| restriction endonuclease [Nocardioides sp. JS614]
gi|119536483|gb|ABL81100.1| restriction endonuclease [Nocardioides sp. JS614]
Length=304
Score = 253 bits (646), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 132/307 (43%), Positives = 200/307 (66%), Gaps = 4/307 (1%)
Query 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
M IPD Q+LMRP+L LADG+ ++ +D+ +SD LSDD+R Q + SG + +RVH
Sbjct 1 MAIPDYQSLMRPVLETLADGRVRAMRDLTEELSDRLSLSDDDRRQTITSG-MSLVANRVH 59
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP 120
WS+T++ +A +DRP RG VQ+T+ G Q L A P + + L +F Y F ++ ++K+
Sbjct 60 WSVTYLFKARAVDRPQRGRVQITERG-QALLATPGEIRNSTLEQFAEYREFYDKYRSKKA 118
Query 121 V-DATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAM 179
++A++PS SP+DLI A A+ R + E+L+K ++ T FE LV++LLEAM
Sbjct 119 ARSSSAEQPSSAAEDESPDDLIARAEADARVVLASELLEKVRSIEATAFERLVLKLLEAM 178
Query 180 GYGRAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGALLG 239
GYG G + T +GD G+DG+I +D LGL+RIYVQAKRY T+G ++ F GA+ G
Sbjct 179 GYGGLGLMRHTGRTGDGGVDGVIEEDKLGLNRIYVQAKRYGAGNTVGSEEMRNFLGAMSG 238
Query 240 KQGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLRLD 299
K DRGV++TTS+F+ A E + R+ LI+G L +L++ + VGV+A++ + R++
Sbjct 239 KV-DRGVFLTTSTFTPAATRELDGRGVRVVLINGEELVDLMIDHGVGVEAIKVATINRIN 297
Query 300 EDFFDGL 306
EDFF+GL
Sbjct 298 EDFFEGL 304
>gi|254514672|ref|ZP_05126733.1| restriction endonuclease [gamma proteobacterium NOR5-3]
gi|219676915|gb|EED33280.1| restriction endonuclease [gamma proteobacterium NOR5-3]
Length=301
Score = 251 bits (642), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 130/306 (43%), Positives = 195/306 (64%), Gaps = 8/306 (2%)
Query 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
M IPD QTLM PIL +DG+ +A + + ++ +F LS + ++LPSG+Q +R+
Sbjct 1 MAIPDYQTLMLPILEMASDGETHTAPEAVDFLAAKFNLSTADVEELLPSGKQARFRNRIG 60
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP 120
W+ T+M QAGLL+ P+RG ++TD G +L PERVD +VL F +++ F+ R K
Sbjct 61 WARTYMKQAGLLEYPSRGKFRITDAGLSLLAQQPERVDNSVLESFDAFLEFKGRKSEKGA 120
Query 121 VDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMG 180
G+ +PE+ +++A + RA +E E+L A +SP FE LV+ LL AMG
Sbjct 121 EMVVVDTTEGE----TPEEALESAYTKLRADLEAEVLAHAKAVSPGYFEQLVVDLLVAMG 176
Query 181 YG--RAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGALL 238
YG RA A S D GIDG+I++D LGLD IY+QAKR+ + ++ RP++ +F GAL
Sbjct 177 YGGNRADAARAVGQSNDEGIDGVINEDALGLDVIYLQAKRW--EGSVARPELQKFIGALA 234
Query 239 GKQGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLRL 298
GKQ +GV+ITTS F++GA E ++++ R+ LIDG +LA L+V + VGV V + E+ R+
Sbjct 235 GKQARKGVFITTSEFTKGAAEFIDKVDPRVILIDGKKLARLMVDHNVGVATVNSFEVKRI 294
Query 299 DEDFFD 304
D D+F+
Sbjct 295 DSDYFE 300
>gi|339484107|ref|YP_004695893.1| restriction endonuclease [Nitrosomonas sp. Is79A3]
gi|338806252|gb|AEJ02494.1| restriction endonuclease [Nitrosomonas sp. Is79A3]
Length=303
Score = 251 bits (641), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 132/307 (43%), Positives = 196/307 (64%), Gaps = 7/307 (2%)
Query 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
MTIPD Q LM P+L +DG+ ++ ++D+F L+ +ER ++LPSG Q +RV
Sbjct 1 MTIPDYQALMLPVLKTASDGKEYKFSQLVEELADQFNLTTEERNELLPSGSQAIFTNRVG 60
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP 120
W+ +++ QA LL P RG +++T G ++L P ++D++VL +P +I FR R K K
Sbjct 61 WARSYLKQADLLATPKRGFLRITQKGIELLSKDPIKIDISVLERYPEFIEFRNRKKDK-- 118
Query 121 VDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMG 180
+ + SG + ++PED + +A + R+A+E EIL SP+ FE LV+ LL MG
Sbjct 119 -NESLIEASGLESNLTPEDSLASAYNKLRSALEAEILSAIKDASPSFFERLVVDLLVKMG 177
Query 181 YG--RAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGALL 238
YG R A + SGD GIDGII++D LGLD IY+QAKR+ + +GRP+I +FAGAL
Sbjct 178 YGGSRQDAGKALGKSGDGGIDGIINEDRLGLDVIYIQAKRW--EGVVGRPEIQKFAGALQ 235
Query 239 GKQGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLRL 298
G++ +GV+ITTSSFS+ A+E A I+ +I LIDG +L+ L+ + VGV V E+ +L
Sbjct 236 GQRARKGVFITTSSFSKEAKEYASFIDTKIILIDGEQLSRLMAEHNVGVSIVGQYEVKKL 295
Query 299 DEDFFDG 305
D D+FD
Sbjct 296 DSDYFDN 302
>gi|288959542|ref|YP_003449883.1| restriction system protein [Azospirillum sp. B510]
gi|288911850|dbj|BAI73339.1| restriction system protein [Azospirillum sp. B510]
Length=308
Score = 250 bits (639), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 131/310 (43%), Positives = 198/310 (64%), Gaps = 8/310 (2%)
Query 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
M IPD QTLM P+L A G DV+ ++D F L+D+ERAQ+LPSGRQ T +RVH
Sbjct 1 MAIPDFQTLMLPVLKTAAGGGEVRIGDVVDQLADVFALTDEERAQLLPSGRQTTFANRVH 60
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRE-RTKAKQ 119
W+ +++++AGL+D R H ++T TGR VL + PER+ + L +FPS+ FR+ + +
Sbjct 61 WAKSYLTKAGLVDLTRRAHFRITPTGRDVLNSPPERITIRFLEQFPSFKGFRDGEAETAE 120
Query 120 PVDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAM 179
D+ + ++P++++ A A++ EIL++ + +P FE V+ LL M
Sbjct 121 AADSVEVVLPVAESPLTPDEVMRQAHLRIEASLAEEILQRVRSGTPAFFEKTVVHLLITM 180
Query 180 GYGRAGAVER-----TSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFA 234
GYG G+V SGD G+DG+I QDPLGLDR+YVQAKRYA T+G I +F
Sbjct 181 GYG--GSVTELDKALVGKSGDDGVDGVIDQDPLGLDRVYVQAKRYADGNTVGAGAIRDFF 238
Query 235 GALLGKQGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVE 294
G+L + +G+++TTS+F+ ARE A+R+ RI LIDG +LA+L++R+ VG + +T+
Sbjct 239 GSLNLFKATKGLFVTTSAFTTSARETADRLGTRIVLIDGIQLAKLMIRHEVGCRIEETLH 298
Query 295 LLRLDEDFFD 304
+ R+DEDFF+
Sbjct 299 IKRVDEDFFE 308
>gi|333373834|ref|ZP_08465733.1| mrr restriction system protein [Desmospora sp. 8437]
gi|332969101|gb|EGK08139.1| mrr restriction system protein [Desmospora sp. 8437]
Length=304
Score = 245 bits (625), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 124/305 (41%), Positives = 195/305 (64%), Gaps = 6/305 (1%)
Query 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
M++PD Q+LM P L LADGQ S ++ ++ EF L+++ER ++LPSGRQRT +RV
Sbjct 1 MSVPDYQSLMLPFLKILADGQVHSLGEIKDRLAKEFKLTEEERKELLPSGRQRTFDNRVS 60
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP 120
W+ T+M +A LL+ R ++T GR+VL P +D+ L +FP ++ F +K+
Sbjct 61 WARTYMKKALLLENTGRAKYRITSRGREVLTMEPVMIDVQFLTQFPEFVEF--INPSKKE 118
Query 121 VDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMG 180
++ ++ + +PE+ ++ E R ++ +IL++ + SP FE LV+ LL AMG
Sbjct 119 SSSSVRQGESKKIDETPEETLEIGYQELRKNLKQDILEQVMMCSPAFFEKLVVDLLVAMG 178
Query 181 YG--RAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGALL 238
YG R+ A + SGD GIDGII +D LGLD IY+QAKR+ + ++GRP+I +FAG+L+
Sbjct 179 YGGSRSDAGQAIGRSGDEGIDGIIKEDKLGLDTIYIQAKRW--NGSVGRPEIQKFAGSLI 236
Query 239 GKQGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLRL 298
G+ +GV+ITTS+F+ GA + +RI+ +I LIDG RLA+ +V + +GV + R+
Sbjct 237 GQGAHKGVFITTSTFTDGALDYVDRIDRKIVLIDGERLADYMVEFDIGVNEYARYVVKRI 296
Query 299 DEDFF 303
D D+F
Sbjct 297 DSDYF 301
>gi|116749960|ref|YP_846647.1| restriction endonuclease [Syntrophobacter fumaroxidans MPOB]
gi|116699024|gb|ABK18212.1| restriction endonuclease [Syntrophobacter fumaroxidans MPOB]
Length=302
Score = 244 bits (623), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 131/307 (43%), Positives = 194/307 (64%), Gaps = 12/307 (3%)
Query 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
M IPD +++M P+L + DG+ SAK+ A++ EF LS+ E Q+LPSGRQ T +R+
Sbjct 1 MAIPDYESIMLPLLRFAGDGKEHSAKEAAQALAVEFALSESELKQLLPSGRQTTFGNRIG 60
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP 120
W+ T++ +AGLL RG Q+T G Q+L P +++ A L FP ++ F E K K
Sbjct 61 WAGTYLKKAGLLQSSRRGIFQITARGLQLLAEKPIQLNSASLHRFPGFVEFIEARKGKAA 120
Query 121 VDATAKRPSGDD--VQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEA 178
+ PS DD + +PE++I+AA R + E+L+ S T FE LV+ L+
Sbjct 121 I------PSDDDPINRETPEEVIEAAYQRIRQDLASELLQTIKNCSATFFERLVVDLIVK 174
Query 179 MGYG--RAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGA 236
MGYG R A E SGD GIDGII +D LGLD +Y+QAKR+ D +GRP++ +FAGA
Sbjct 175 MGYGGTRKDAGEAIGKSGDEGIDGIIKEDRLGLDIVYIQAKRW--DSQVGRPEVQKFAGA 232
Query 237 LLGKQGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELL 296
L G++ +G+++TTS+F++ AR+ RI ++I LIDG LA+L++ + +GV AV + EL
Sbjct 233 LQGQRAKKGIFLTTSAFTKEARDYVSRIESKIVLIDGDLLAQLMIDFNIGVAAVASYELK 292
Query 297 RLDEDFF 303
R+D D+F
Sbjct 293 RIDSDYF 299
>gi|159028005|emb|CAO87965.1| mrr [Microcystis aeruginosa PCC 7806]
Length=307
Score = 243 bits (621), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 121/305 (40%), Positives = 189/305 (62%), Gaps = 3/305 (0%)
Query 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
M IPD Q++M P+L LADG+ +++ A+ EF +++ ER +MLPSG+Q+ +RV
Sbjct 1 MPIPDFQSIMLPLLKILADGKVYKYREIFEALVREFQVTEAERKEMLPSGQQKIFANRVG 60
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP 120
W+ T++ +AGL++ P R +++ G+++L +P R+D LR+FP + F K +
Sbjct 61 WAKTYLKKAGLIESPQRATFVISEKGKEILSQNPARIDTKFLRQFPEFQEFTRVNKQNET 120
Query 121 VDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMG 180
+ + + D Q +PE+L++ + E R A+ ++L LSP FE LV+ LL MG
Sbjct 121 ITLESNLSTSDQEQ-NPEELLENSYQEIRQALATDLLFILRKLSPDAFEKLVVELLVKMG 179
Query 181 YGRA--GAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGALL 238
YG + A + SGD GIDGII +D LGLD IY+QAKR+A + +GRP+I +F GAL
Sbjct 180 YGGSIRDAGKAVGKSGDQGIDGIIKEDRLGLDIIYIQAKRWADNNAVGRPEIQKFVGALA 239
Query 239 GKQGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLRL 298
G+ +G++ITTS F++ A E A R +I LIDG L +L++ Y +GV + E+ R+
Sbjct 240 GQGAKKGIFITTSYFTQDALEYAPRNEIKIVLIDGEELGQLMIDYNLGVSTQKIYEIKRI 299
Query 299 DEDFF 303
D D+F
Sbjct 300 DHDYF 304
>gi|254786397|ref|YP_003073826.1| Mrr restriction system protein [Teredinibacter turnerae T7901]
gi|237684239|gb|ACR11503.1| Mrr restriction system protein [Teredinibacter turnerae T7901]
Length=303
Score = 241 bits (616), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 125/303 (42%), Positives = 187/303 (62%), Gaps = 6/303 (1%)
Query 3 IPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVHWS 62
IPD Q+ MRP+LA ++DGQ + + F L++DE+A+ LPSG+Q + +R+ W+
Sbjct 2 IPDFQSCMRPLLASVSDGQIHRFNESFEQVCMHFQLTEDEQAEKLPSGKQTIIRNRIAWA 61
Query 63 LTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQPVD 122
T++++AGLL P R +Q+TD G+ L+ PER+D+ L++FP ++ F AK +
Sbjct 62 RTYLNKAGLLTAPGRSQLQITDRGQAALQQEPERIDVRFLKQFPEFVEFH---TAKPKAN 118
Query 123 ATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMGYG 182
T D P + ++ A +E R + E+L+ SP E LV+ L++AMGYG
Sbjct 119 KTVVVDDNDTEDTDPTERLEEAYSEIRQELIDEVLRAVKQQSPQFLEKLVVELMQAMGYG 178
Query 183 --RAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGALLGK 240
+ + T + D GIDG+I++DPLGLD IY+QAKRY D TIGR I F+GAL +
Sbjct 179 GWSKESGQATQYTADGGIDGLINEDPLGLDTIYLQAKRYE-DSTIGREAIQAFSGALDMQ 237
Query 241 QGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLRLDE 300
+ +GV+ITTS FS+GA E I +I LIDGA+LA L++++ +GV +T E+ LD
Sbjct 238 RAHKGVFITTSKFSKGALEYVSMIQKKIILIDGAKLATLMIKHNLGVSVKETYEIKALDT 297
Query 301 DFF 303
DFF
Sbjct 298 DFF 300
>gi|88601780|ref|YP_501958.1| restriction endonuclease [Methanospirillum hungatei JF-1]
gi|88187242|gb|ABD40239.1| restriction endonuclease [Methanospirillum hungatei JF-1]
Length=303
Score = 241 bits (615), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 123/308 (40%), Positives = 197/308 (64%), Gaps = 10/308 (3%)
Query 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
M IPD QT + P+L + DG+ S +++ + ++ F LS++E Q LPSG Q T ++RV
Sbjct 1 MAIPDYQTFLLPVLLAVKDGKEHSVQEIYSQIASSFHLSEEELNQKLPSGVQSTYHNRVG 60
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRE-RTKAKQ 119
W+ T++ +AGL++ P+RG V++T+ G VL +P+R+D L++FP ++ F++ RT
Sbjct 61 WAKTYLKKAGLVNTPSRGKVKITERGLAVLSQNPQRIDQNFLKQFPEFLDFKDFRTDNHS 120
Query 120 PVDATAKRPSGD-DVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEA 178
P+ K SG + ++P+++++ + + R + E+L + + SP FE LV+ LL +
Sbjct 121 PL----KEESGTAESTLTPQEILENSYQDVRNKLAHELLSQVMNSSPEFFERLVVDLLVS 176
Query 179 MGYG--RAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGA 236
MGYG R+ A ER +GD GIDGII +D LGLD + +QAKR+ T+GRP+I F G+
Sbjct 177 MGYGGSRSEAGERVGKTGDDGIDGIIKEDKLGLDTVCIQAKRW--QNTVGRPEIQAFVGS 234
Query 237 LLGKQGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELL 296
L G + +GV+ITTS FSR A+E +RI ++ LIDG LAEL++ + VGV +
Sbjct 235 LAGNRARKGVFITTSRFSREAQEYVQRIEQKVVLIDGETLAELMIDHNVGVSDESRYIVK 294
Query 297 RLDEDFFD 304
++D D+F+
Sbjct 295 KIDMDYFE 302
>gi|300310547|ref|YP_003774639.1| 5-methylcytosine-specific restriction endonuclease [Herbaspirillum
seropedicae SmR1]
gi|300073332|gb|ADJ62731.1| 5-methylcytosine-specific restriction endonuclease protein [Herbaspirillum
seropedicae SmR1]
Length=306
Score = 240 bits (613), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 130/307 (43%), Positives = 192/307 (63%), Gaps = 4/307 (1%)
Query 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
MTIPD Q++M P+L D + +D++ ++DEF L+D +RA+MLPSG +R
Sbjct 1 MTIPDYQSIMLPLLRLTGDTKEHRFRDLVEQLADEFSLTDAQRAEMLPSGTAPLFDNRAG 60
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP 120
W+ T++ QAGLL RG +Q+T+ G +L P ++D+ LR + + F+ R + K+
Sbjct 61 WARTYLKQAGLLQSAKRGVLQITERGSDLLSKPPVKIDVEFLRRYQEFREFQVRRRTKEV 120
Query 121 VDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMG 180
A + +PED + AA R+ +E E+L + ++SP FE LVI LL +MG
Sbjct 121 DTPDAPNATVASTDQTPEDALAAAYQTLRSNLEAELLDQVRSMSPAFFERLVIDLLVSMG 180
Query 181 YG--RAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGALL 238
YG R A SGD GIDGII +D LGLD IYVQAKR+ + T+GRP+I +FAGAL
Sbjct 181 YGGSRQDAASAVGKSGDGGIDGIIKEDRLGLDVIYVQAKRW--EGTVGRPEIQKFAGALQ 238
Query 239 GKQGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLRL 298
G++ ++GV+ITTSSFS A E I+++I L+DG +LA+L+V + VGV V E+ ++
Sbjct 239 GQRANKGVFITTSSFSSEAEEYTNIISSKIILLDGRQLAKLMVDHNVGVAQVGLYEIKKI 298
Query 299 DEDFFDG 305
D D+F+G
Sbjct 299 DSDYFEG 305
>gi|166367573|ref|YP_001659846.1| Mrr restriction system protein [Microcystis aeruginosa NIES-843]
gi|166089946|dbj|BAG04654.1| Mrr restriction system protein [Microcystis aeruginosa NIES-843]
Length=307
Score = 239 bits (609), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 120/305 (40%), Positives = 187/305 (62%), Gaps = 3/305 (0%)
Query 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
M IPD Q++M P+L LADG+ +++ A+ EF +++ ER +MLPSG+Q +RV
Sbjct 1 MPIPDFQSIMLPLLKILADGKVYKYREIFEALVREFQVTEAERKEMLPSGQQEIFANRVG 60
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP 120
W+ T++ +AGL+D P R +++ G+++L + + +D LR+FP + F K +
Sbjct 61 WAKTYLKKAGLIDSPQRATFVISEKGKEILSQNLDHIDTKFLRQFPEFQEFTRVNKQNET 120
Query 121 VDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMG 180
+ + + D Q +PE+L++ + E R A+ ++L LSP FE LV+ LL MG
Sbjct 121 ITLESNLLASDQEQ-NPEELLENSYQEIRQALATDLLSILRKLSPDAFEKLVVELLVKMG 179
Query 181 YGRA--GAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGALL 238
YG + A + SGD GIDGII +D LGLD IY+QAKR+A + +GRP+I +F GAL
Sbjct 180 YGGSIRDAGKAVGKSGDQGIDGIIKEDRLGLDIIYIQAKRWADNNAVGRPEIQKFVGALA 239
Query 239 GKQGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLRL 298
G+ +G++ITTS F++ A E A R +I LIDG L +L++ Y +GV + E+ R+
Sbjct 240 GQGAKKGIFITTSYFTQEALEYAPRNEIKIVLIDGEELGQLMIDYNLGVSTKEIYEIKRI 299
Query 299 DEDFF 303
D D+F
Sbjct 300 DHDYF 304
>gi|344200362|ref|YP_004784688.1| restriction endonuclease [Acidithiobacillus ferrivorans SS3]
gi|343775806|gb|AEM48362.1| restriction endonuclease [Acidithiobacillus ferrivorans SS3]
Length=306
Score = 238 bits (606), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 126/306 (42%), Positives = 187/306 (62%), Gaps = 7/306 (2%)
Query 3 IPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVHWS 62
IPD Q M PIL YL+DG KD+ ++ + +S + R LPSG QR RV W+
Sbjct 4 IPDYQFFMLPILEYLSDGHDHGMKDIRDHLAARYAISTELREAFLPSGTQRIFDSRVAWA 63
Query 63 LTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQPVD 122
T+++QAGL++ P RG V +T G+++L HP+ +D+ VL +FP +IAFR + +
Sbjct 64 KTYITQAGLVESPKRGVVHITARGKELLLQHPQHIDLTVLEQFPEFIAFRNKARKNDETI 123
Query 123 ATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMGYG 182
A+ S +PE+ ++ A R + E++ + PT FE LV+ LL MGYG
Sbjct 124 VPAELSSVS--TATPEEQLETAFQTIRIDLVSELMDRLKACDPTFFERLVVELLLKMGYG 181
Query 183 R--AGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGALLGK 240
+ A A + SGD GIDG+IS+D LGLD +Y+QAKR+A ++GRP+IH+F GAL GK
Sbjct 182 KNLAEAGKAIGRSGDEGIDGVISEDKLGLDSVYLQAKRWA--GSVGRPEIHKFVGALHGK 239
Query 241 QGDRGVYITTSSFSRGAREEAER-INARIELIDGARLAELLVRYRVGVQAVQTVELLRLD 299
+GV++TT +F+ A+E A R ++ R+ LIDG LA+ ++ Y +GV E+ R+D
Sbjct 240 GARKGVFLTTGTFTAEAKEYAARLLDLRVVLIDGPALADYMIDYGLGVTTRTVYEIKRID 299
Query 300 EDFFDG 305
D+FDG
Sbjct 300 SDWFDG 305
>gi|17233148|ref|NP_490238.1| mrr restriction system protein [Nostoc sp. PCC 7120]
gi|17135670|dbj|BAB78216.1| mrr restriction system protein [Nostoc sp. PCC 7120]
Length=305
Score = 237 bits (605), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 120/307 (40%), Positives = 193/307 (63%), Gaps = 9/307 (2%)
Query 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
M IPD Q +M P+L + D + S ++ I A++D F L++DER ++LPSGRQ T +RV
Sbjct 1 MPIPDYQAIMLPLLKFTTDQKEHSLQETIDALADHFQLTEDERKELLPSGRQPTFNNRVG 60
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP 120
W+ T++ +AGL++ RG+ ++TD G +K +P ++ +LR+FP ++ F+ T Q
Sbjct 61 WARTYLKKAGLVESTKRGYFRITDRGIDTIKTNPVEINAKILRQFPEFLEFQNYT---QQ 117
Query 121 VDATAKRPSGDDVQV--SPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEA 178
+ + SG ++ +PE+ ++ A+ + + ++L+ SP FE LV+ LL
Sbjct 118 SEESTSNGSGTEINTTRTPEEDVELAIQKLTKELASDLLQIIKNSSPAFFEKLVVDLLVK 177
Query 179 MGYG--RAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGA 236
MGYG R A + SGD GIDGII++D LGLD IY+QAKR+ + ++GRP+I +FAGA
Sbjct 178 MGYGGTRKDAGKTVGRSGDGGIDGIINEDRLGLDVIYIQAKRW--ENSVGRPEIQKFAGA 235
Query 237 LLGKQGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELL 296
L G + +GV+ITTS+F+ A++ RI+++I LIDG L +L++ VGV E+
Sbjct 236 LQGFRAKKGVFITTSTFTNEAKDYVSRIDSKIVLIDGEMLTQLMIENNVGVTPFTVYEVK 295
Query 297 RLDEDFF 303
++D D+F
Sbjct 296 KVDSDYF 302
>gi|34540717|ref|NP_905196.1| Mrr restriction system protein [Porphyromonas gingivalis W83]
gi|34397031|gb|AAQ66095.1| Mrr restriction system protein [Porphyromonas gingivalis W83]
Length=305
Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 120/305 (40%), Positives = 188/305 (62%), Gaps = 8/305 (2%)
Query 3 IPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVHWS 62
IPD QTLM P+L ++DGQ +D+I ++ EF ++D+ER ++L SG + +RV W+
Sbjct 2 IPDFQTLMLPLLKCVSDGQEHKYRDIIEHLAAEFEVTDEERKELLASGSKAVFDNRVGWA 61
Query 63 LTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRE--RTKAKQP 120
T++ +AGLLD P R + ++D GR++L +P ++D LR FP++I F+ R +
Sbjct 62 RTYLKKAGLLDSPKRAILIISDLGREILSKNPPKIDTKYLRRFPAFIEFQNGYRNDGETE 121
Query 121 VDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMG 180
++ ++ + +PE+++D A R ++ E+L K + LSP FE LV+ LL MG
Sbjct 122 EESITEKIH----EQTPEEVLDKAYQRIRKSLASELLNKVIDLSPAFFERLVVELLVKMG 177
Query 181 YGRA--GAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGALL 238
YG + A + SGD GIDG I +D LGLD IY+QAKR+ +GRP++ +F GAL
Sbjct 178 YGGSIKDAGKALGKSGDEGIDGTIKEDKLGLDIIYIQAKRWRPGNVVGRPELQKFVGALA 237
Query 239 GKQGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLRL 298
G+ +G++ITTS+F++ A R +I LIDG +L +L++ Y +G QT EL +L
Sbjct 238 GQGAKKGIFITTSNFTKEALTYTPRNETKIVLIDGEQLTQLMIDYNLGCTTQQTYELKKL 297
Query 299 DEDFF 303
D D+F
Sbjct 298 DSDYF 302
>gi|75812373|ref|YP_319992.1| restriction endonuclease [Anabaena variabilis ATCC 29413]
gi|75705129|gb|ABA24803.1| restriction endonuclease [Anabaena variabilis ATCC 29413]
Length=305
Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 120/307 (40%), Positives = 193/307 (63%), Gaps = 9/307 (2%)
Query 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
M IPD Q +M P+L + D + S ++ I A++D F L++DER ++LPSGRQ T +RV
Sbjct 1 MPIPDYQAIMLPLLKFTTDQKEHSLQETIDALADNFQLTEDERKELLPSGRQPTFNNRVG 60
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP 120
W+ T++ +AGL++ RG+ ++TD G +K +P ++ LR+FP ++ F+ T Q
Sbjct 61 WARTYLKKAGLVESTKRGYFRITDKGIDTIKTNPVEINAKFLRQFPEFLEFQNYT---QQ 117
Query 121 VDATAKRPSGDDVQV--SPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEA 178
+ +A SG+++ +PE+ ++ A+ + + ++L+ SP FE LV+ LL
Sbjct 118 SEESASNGSGNEINTTRTPEEDVELAIQKLTKELASDLLQIIKNSSPAFFEKLVVDLLVK 177
Query 179 MGYG--RAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGA 236
MGYG R A + SGD GIDGII++D LGLD IY+QAKR+ + ++GRP+I +FAGA
Sbjct 178 MGYGGTRKDAGKTVGRSGDGGIDGIINEDRLGLDVIYIQAKRW--ENSVGRPEIQKFAGA 235
Query 237 LLGKQGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELL 296
L G + +G++ITTS+F+ A++ RI+++I LIDG L +L++ VGV E
Sbjct 236 LQGFRAKKGMFITTSTFTNEAKDYVSRIDSKIVLIDGEMLTQLMIENNVGVTPFTVYEAK 295
Query 297 RLDEDFF 303
++D D+F
Sbjct 296 KVDSDYF 302
>gi|188994846|ref|YP_001929098.1| putative Mrr restriction system protein [Porphyromonas gingivalis
ATCC 33277]
gi|188594526|dbj|BAG33501.1| putative Mrr restriction system protein [Porphyromonas gingivalis
ATCC 33277]
Length=305
Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 120/303 (40%), Positives = 187/303 (62%), Gaps = 4/303 (1%)
Query 3 IPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVHWS 62
IPD QTLM P+L ++DGQ +D+I ++ EF ++D+ER ++L SG Q +RV W+
Sbjct 2 IPDFQTLMLPLLKCVSDGQEHKYRDIIEHLAAEFEVTDEERKELLASGSQAVFNNRVGWA 61
Query 63 LTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQPVD 122
T++ +AGLLD P R + ++D GR++L +P ++D LR FP++I F+ + +
Sbjct 62 RTYLKKAGLLDSPKRAILIISDLGREILSKNPPKIDTKYLRRFPAFIEFQ--NGYRNDGE 119
Query 123 ATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMGYG 182
+ + + + +PE+++D A R ++ E+L K + LSP FE LV+ LL MGYG
Sbjct 120 TEEESITEEIHEQTPEEVLDKAYQRIRKSLASELLNKVIDLSPAFFERLVVELLVKMGYG 179
Query 183 RA--GAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGALLGK 240
+ A + SGD GIDG I +D LGLD IY+QAKR+ +GRP++ +F GAL G+
Sbjct 180 GSIKDAGKALGKSGDEGIDGTIKEDKLGLDIIYIQAKRWRPGNVVGRPELQKFVGALAGQ 239
Query 241 QGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLRLDE 300
+G++ITTS+F++ A R +I LIDG +L +L++ Y +G QT EL +LD
Sbjct 240 GAKKGIFITTSNFTKEALTYTPRNETKIVLIDGEQLTQLMIDYNLGCTTQQTYELKKLDS 299
Query 301 DFF 303
D+F
Sbjct 300 DYF 302
>gi|297625533|ref|YP_003687296.1| restriction system protein [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296921298|emb|CBL55851.1| restriction system protein [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length=303
Score = 235 bits (599), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 127/301 (43%), Positives = 179/301 (60%), Gaps = 6/301 (1%)
Query 10 MRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVHWSLTHMSQA 69
M P L LADG V A ++D ++ ++R ++LPSG+ R +R +W+L+++ +A
Sbjct 1 MVPALRLLADGDIHRGNTVAAPVADALAITPEQREKLLPSGQPR-FANRANWALSYLYRA 59
Query 70 GLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQPVDATAKRPS 129
G ++RPTR H ++TD GRQ+L +HP + LR P Y+ A A+ S
Sbjct 60 GAVERPTRAHYRITDVGRQLLASHPAGLTEHDLRAVPGYVIPSNHRNAASTSPASVPESS 119
Query 130 ----GDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMGY-GRA 184
+ +SP + I+ + + E+L + P FED V+ LLEAMGY G
Sbjct 120 STIPAETAALSPTEQIEEGIERIHEELASELLGRLHDQDPAFFEDAVLSLLEAMGYPGTD 179
Query 185 GAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGALLGKQGDR 244
G + RT S D GIDGI+ QD LGL R+YVQAKRY +D +GRP + FAGAL G ++
Sbjct 180 GRITRTQLSRDGGIDGIVDQDALGLSRVYVQAKRYDLDAAVGRPTVQAFAGALQGNGANQ 239
Query 245 GVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLRLDEDFFD 304
GV+ TTS FS AR+ AE++ R+ LIDGARLA L++RY VGVQ +T E+ +DEDFF
Sbjct 240 GVFFTTSRFSTDARDFAEKLPTRVVLIDGARLASLMIRYHVGVQVKKTYEIGEIDEDFFA 299
Query 305 G 305
G
Sbjct 300 G 300
>gi|222525259|ref|YP_002569730.1| restriction endonuclease [Chloroflexus sp. Y-400-fl]
gi|222449138|gb|ACM53404.1| restriction endonuclease [Chloroflexus sp. Y-400-fl]
Length=296
Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 130/305 (43%), Positives = 191/305 (63%), Gaps = 14/305 (4%)
Query 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
M IPD QT+M P+L +ADGQ S + ++ +++ F LS++E ++LPSG+Q Y+RV
Sbjct 1 MPIPDFQTIMLPMLRVMADGQEHSIQGLLDRLAETFSLSEEELRELLPSGKQTLFYNRVG 60
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP 120
W+ T++++AGLL+ R + ++T G+QVL+ +P R+D+ L +FP Y+ FR R K
Sbjct 61 WARTYLAKAGLLETTRRSYYRITARGQQVLQQNPSRIDIRFLEQFPEYLEFRRRPKLT-- 118
Query 121 VDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMG 180
++ + +PE++++ A E R + E+LK P FE LV+ LL MG
Sbjct 119 --------IFEEKEQTPEEVLEDAYQEIRNNLAQELLKLVKQSPPAFFERLVVELLVNMG 170
Query 181 YG--RAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGALL 238
YG R A GD GIDGII +D LGLD IY+QAKR+ D +GRP+I +F GAL+
Sbjct 171 YGGSRRDAARAVGQVGDEGIDGIIDEDRLGLDTIYIQAKRW--DNVVGRPEIQKFVGALM 228
Query 239 GKQGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLRL 298
GK+ +G++ITTS+FS A I+ +I LIDG RLAEL++ Y VGV V T +L R+
Sbjct 229 GKRARKGIFITTSTFSAEAINYVANIDTKIVLIDGKRLAELMIDYDVGVATVSTYQLKRV 288
Query 299 DEDFF 303
D D+F
Sbjct 289 DSDYF 293
>gi|334146688|ref|YP_004509616.1| Mrr restriction system protein [Porphyromonas gingivalis TDC60]
gi|333803843|dbj|BAK25050.1| Mrr restriction system protein [Porphyromonas gingivalis TDC60]
Length=305
Score = 234 bits (597), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 119/303 (40%), Positives = 187/303 (62%), Gaps = 4/303 (1%)
Query 3 IPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVHWS 62
IPD QTLM P+L ++DGQ +D+I ++ EF ++D+ER ++L SG + +RV W+
Sbjct 2 IPDFQTLMLPLLKCVSDGQEHKYRDIIEHLAAEFEVTDEERKELLASGSKAVFDNRVGWA 61
Query 63 LTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQPVD 122
T++ +AGLLD P R + ++D GR++L +P ++D LR FP++I F+ + +
Sbjct 62 RTYLKKAGLLDSPKRAILIISDLGREILSKNPPKIDTKYLRRFPAFIEFQ--NGYRNDGE 119
Query 123 ATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMGYG 182
+ + + + +PE+++D A R ++ E+L K + LSP FE LV+ LL MGYG
Sbjct 120 TEEESITEEIHEQTPEEVLDKAYQRIRKSLASELLNKVIDLSPAFFERLVVELLVKMGYG 179
Query 183 RA--GAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGALLGK 240
+ A + SGD GIDG I +D LGLD IY+QAKR+ +GRP++ +F GAL G+
Sbjct 180 GSIKDAGKALGKSGDEGIDGTIKEDKLGLDIIYIQAKRWRPGNVVGRPELQKFVGALAGQ 239
Query 241 QGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLRLDE 300
+G++ITTS+F++ A R +I LIDG +L +L++ Y +G QT EL +LD
Sbjct 240 GAKKGIFITTSNFTKEALTYTPRNETKIVLIDGEQLTQLMIDYNLGCTTQQTYELKKLDS 299
Query 301 DFF 303
D+F
Sbjct 300 DYF 302
>gi|163847411|ref|YP_001635455.1| restriction endonuclease [Chloroflexus aurantiacus J-10-fl]
gi|163668700|gb|ABY35066.1| restriction endonuclease [Chloroflexus aurantiacus J-10-fl]
Length=304
Score = 234 bits (597), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 130/305 (43%), Positives = 191/305 (63%), Gaps = 14/305 (4%)
Query 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
M IPD QT+M P+L +ADGQ S + ++ +++ F LS++E ++LPSG+Q Y+RV
Sbjct 9 MPIPDFQTIMLPMLRVMADGQEHSIQGLLDRLAETFSLSEEELRELLPSGKQTLFYNRVG 68
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP 120
W+ T++++AGLL+ R + ++T G+QVL+ +P R+D+ L +FP Y+ FR R K
Sbjct 69 WARTYLAKAGLLETTRRSYYRITARGQQVLQQNPSRIDIRFLEQFPEYLEFRRRPKLT-- 126
Query 121 VDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMG 180
++ + +PE++++ A E R + E+LK P FE LV+ LL MG
Sbjct 127 --------IFEEKEQTPEEVLEDAYQEIRNNLAQELLKLVKQSPPAFFERLVVELLVNMG 178
Query 181 YG--RAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGALL 238
YG R A GD GIDGII +D LGLD IY+QAKR+ D +GRP+I +F GAL+
Sbjct 179 YGGSRRDAARAVGQVGDEGIDGIIDEDRLGLDTIYIQAKRW--DNVVGRPEIQKFVGALM 236
Query 239 GKQGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLRL 298
GK+ +G++ITTS+FS A I+ +I LIDG RLAEL++ Y VGV V T +L R+
Sbjct 237 GKRARKGIFITTSTFSAEAINYVANIDTKIVLIDGKRLAELMIDYDVGVATVSTYQLKRV 296
Query 299 DEDFF 303
D D+F
Sbjct 297 DSDYF 301
>gi|251771181|gb|EES51763.1| restriction endonuclease [Leptospirillum ferrodiazotrophum]
Length=302
Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 125/307 (41%), Positives = 192/307 (63%), Gaps = 9/307 (2%)
Query 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
M IPD Q++MRPIL DG+ S +++I +S F LS+++R + SG Q T Y+R
Sbjct 1 MAIPDFQSIMRPILELSKDGKNHSIRELIEPLSVRFHLSEEDRNALNASG-QTTFYNRAA 59
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP 120
W+ TH+ QAGLL+ RG+ ++T+ G L+ PER+DMA L ++ + FR+R K+
Sbjct 60 WAKTHLKQAGLLEPVQRGYFRITERGLNALREAPERIDMAFLLQYKEFADFRQR---KRT 116
Query 121 VDATAKRP-SGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAM 179
D + G + ++PE+ ++ A + R +E E+L+ T SP+ FE +V+ +L M
Sbjct 117 NDTEPEHDLGGANNLLTPEESVETAFKKFRQELEAELLQTLKTCSPSLFERIVVDVLVKM 176
Query 180 GYG--RAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGAL 237
GYG R A + SGD GIDG+I +D LGLD IY+QAK++ + T+ RP+I +FAGAL
Sbjct 177 GYGGNRQDAGQAIGKSGDGGIDGLIKEDRLGLDTIYIQAKKW--EGTVSRPEIQKFAGAL 234
Query 238 LGKQGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLR 297
G + +GV+ITTSSF++ ARE + +I LIDG RL + ++ + VGV + T E +
Sbjct 235 QGMRAKKGVFITTSSFTKEAREYVAHLENKIILIDGERLTQYMIDFNVGVSIIGTYETKK 294
Query 298 LDEDFFD 304
+D D+F+
Sbjct 295 IDLDYFE 301
>gi|153003951|ref|YP_001378276.1| restriction endonuclease [Anaeromyxobacter sp. Fw109-5]
gi|152027524|gb|ABS25292.1| restriction endonuclease [Anaeromyxobacter sp. Fw109-5]
Length=304
Score = 232 bits (591), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 132/305 (44%), Positives = 183/305 (60%), Gaps = 6/305 (1%)
Query 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
M +PD ++ M P+L + DG +DV ++ EF L+ ERA+MLPSG+Q +RV
Sbjct 1 MPVPDYESFMLPLLRAVGDGDEHHVRDVRDRLAAEFNLTAQERAEMLPSGKQSVFDNRVG 60
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP 120
W+ T++ +AGL+ RG Q+T GR VL P + + L F + F +
Sbjct 61 WAKTYLDKAGLISSVRRGVYQITKEGRSVLTERPREITKSYLERFEPFREFLT-LRHNGD 119
Query 121 VDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMG 180
VD ++ PS D + +PE+ ++ A R E ++L T SP FE LVI LL MG
Sbjct 120 VDESSFSPSTDPTE-TPEEQLEVAYRRIRQKTEADVLAAVKTASPQFFEKLVIELLVKMG 178
Query 181 YGR--AGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGALL 238
YG A A E +GD GIDG+I +D LGLD IYVQAKR+ T+GRP I FAG+LL
Sbjct 179 YGGTIADAGEALGRTGDGGIDGVIKEDKLGLDAIYVQAKRW--QNTVGRPDIQGFAGSLL 236
Query 239 GKQGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLRL 298
G++G +GV+ITTS+FS+ ARE +I A+I LIDGA LA L+V + VGV V+T + R+
Sbjct 237 GRRGRKGVFITTSAFSKEAREYVGQIEAKIILIDGATLAGLMVDHDVGVNTVETYAVKRV 296
Query 299 DEDFF 303
D D+F
Sbjct 297 DSDYF 301
>gi|257058969|ref|YP_003136857.1| restriction endonuclease [Cyanothece sp. PCC 8802]
gi|256589135|gb|ACV00022.1| restriction endonuclease [Cyanothece sp. PCC 8802]
Length=310
Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 121/311 (39%), Positives = 194/311 (63%), Gaps = 11/311 (3%)
Query 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
M+IPD Q+++ P+L Y D Q S ++ I ++ F L+D+E+ ++LPSG+Q +RV
Sbjct 1 MSIPDFQSILLPLLKYSGDKQEHSLRESIEYLAGIFNLTDEEKRELLPSGQQAIFDNRVG 60
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP 120
W+ T++ +A L++ RG+ ++TD G VL+ + +++D L++F + F TK K+
Sbjct 61 WAKTYLKKAHLIETTKRGYFRITDQGITVLQQNYQKIDTNFLKQFEEFNEFHLGTKTKKD 120
Query 121 VDATAKRPS------GDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIR 174
++ D +Q +PE+L+D + + ++ EIL++ + SP FE LVI
Sbjct 121 STNNSENSELSCLSLNDQIQ-TPEELLDQLYQKIKDDLKQEILEQIMRCSPEFFERLVID 179
Query 175 LLEAMGYG--RAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHE 232
LL MGYG + A E + D GIDGII +D LGLD IY+QAKR+ + T+GRP+I +
Sbjct 180 LLIRMGYGGSKKEAGEAVGKAKDGGIDGIIKEDRLGLDIIYIQAKRW--EGTVGRPEIQK 237
Query 233 FAGALLGKQGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQT 292
F GALLG+Q +G++ITTS FS+ A+E I+++I LI G L+ELL Y VGV +++
Sbjct 238 FVGALLGQQAKKGIFITTSQFSKEAKEYVAIIDSKIILISGDLLSELLSDYNVGVSVIKS 297
Query 293 VELLRLDEDFF 303
E+ ++D D+F
Sbjct 298 YEIKKIDTDYF 308
>gi|254466305|ref|ZP_05079716.1| Mrr restriction system protein [Rhodobacterales bacterium Y4I]
gi|206687213|gb|EDZ47695.1| Mrr restriction system protein [Rhodobacterales bacterium Y4I]
Length=321
Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 125/308 (41%), Positives = 189/308 (62%), Gaps = 7/308 (2%)
Query 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
M+IPD QT M P+L +G+ K + VI +S+EF L++DE+A++LPSG+Q + +R+H
Sbjct 14 MSIPDYQTFMLPVLKKSQNGEVKIST-VIEELSEEFNLTEDEKAELLPSGKQTIVANRIH 72
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP 120
W+ T++ QAGL++ R H ++D GR VL +P+ +D +L EF + F+ R + Q
Sbjct 73 WAKTYLKQAGLIEATRRAHFVISDRGRAVLAKNPDAIDARMLEEFDEFQDFKNR-RGTQD 131
Query 121 VDATAKRPSGDDVQVS---PEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLE 177
T + V+ S P++++ AA + + E+L+K T SP FE LV+ LL
Sbjct 132 TSRTQSDDNDSPVESSSKTPDEIMRAAHRKIEDTLRAEMLEKIRTASPAFFEGLVVNLLV 191
Query 178 AMGYGRA--GAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAG 235
AMGYG + A +GD G+DG+I QD LGLDR+Y+QAKRY +G I +F G
Sbjct 192 AMGYGGSVTDAGRAIGRAGDGGVDGVIDQDALGLDRVYIQAKRYGDGNNVGPGAIRDFFG 251
Query 236 ALLGKQGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVEL 295
+L + +G+++TTS+F+ A E A+ ++ RI LID L +L+VRY VG + T+ L
Sbjct 252 SLDRFKATKGLFVTTSAFTNEAVETAQLLSKRIVLIDSETLTKLMVRYNVGCRVEDTLFL 311
Query 296 LRLDEDFF 303
RLDEDFF
Sbjct 312 RRLDEDFF 319
>gi|218245921|ref|YP_002371292.1| restriction endonuclease [Cyanothece sp. PCC 8801]
gi|218166399|gb|ACK65136.1| restriction endonuclease [Cyanothece sp. PCC 8801]
Length=310
Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 120/311 (39%), Positives = 194/311 (63%), Gaps = 11/311 (3%)
Query 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
M+IPD Q+++ P+L Y D Q S ++ I ++ F L+D+E+ ++LPSG+Q +RV
Sbjct 1 MSIPDFQSILLPLLKYSGDKQEHSLRESIEYLAGIFNLTDEEKRELLPSGQQAIFDNRVG 60
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP 120
W+ T++ +A L++ RG+ ++TD G VL+ + +++D L++F + F TK K+
Sbjct 61 WAKTYLKKAHLIETTKRGYFRITDQGITVLQQNYQKIDTNFLKQFEEFNEFHLGTKTKKD 120
Query 121 VDATAKRPS------GDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIR 174
++ D +Q +PE+L+D + + ++ EIL++ + SP FE LVI
Sbjct 121 STNNSENSELSCLSLNDQIQ-TPEELLDQLYQKIKDDLKQEILEQIMRCSPEFFERLVID 179
Query 175 LLEAMGYG--RAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHE 232
LL MGYG + A + + D GIDGII +D LGLD IY+QAKR+ + T+GRP+I +
Sbjct 180 LLIKMGYGGSKKEAGKAVGKAKDGGIDGIIKEDRLGLDIIYIQAKRW--EGTVGRPEIQK 237
Query 233 FAGALLGKQGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQT 292
F GALLG+Q +G++ITTS FS+ A+E I+++I LI G L+ELL Y VGV +++
Sbjct 238 FVGALLGQQAKKGIFITTSQFSKEAKEYVAIIDSKIILISGDLLSELLSDYNVGVSVIKS 297
Query 293 VELLRLDEDFF 303
E+ ++D D+F
Sbjct 298 YEIKKIDTDYF 308
>gi|270157736|ref|ZP_06186393.1| Mrr restriction system protein [Legionella longbeachae D-4968]
gi|269989761|gb|EEZ96015.1| Mrr restriction system protein [Legionella longbeachae D-4968]
Length=304
Score = 230 bits (586), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 112/306 (37%), Positives = 183/306 (60%), Gaps = 8/306 (2%)
Query 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
M IP+ QT M P+L + + +I ++++F S DE+ +M+PSG+ + R+
Sbjct 1 MAIPNYQTFMLPVLKSVKGNEPLKYSTLIELVTNQFNFSPDEKKEMIPSGKTTVLKSRIG 60
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP 120
W+ +++ QAGLL P RG + +T G VL PE +D L++FP ++AF +R +
Sbjct 61 WAKSYLKQAGLLFYPKRGFISLTPIGNNVLAKSPETIDTNYLKQFPDFLAFLDRNSSSNK 120
Query 121 VDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMG 180
T P +P++L++ ++ + E++ T SP FE LVI ++ +MG
Sbjct 121 QLNTDTDPH----DATPDELMEQTYNTLKSKILDELIDTIKTCSPQFFEQLVIDVIVSMG 176
Query 181 YG--RAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGALL 238
YG R A + +GD GIDG++++D LGLD IY+QAKR+ + +GRP+I +F GAL
Sbjct 177 YGGSRREAGKAIGQTGDEGIDGVVNEDRLGLDVIYLQAKRW--EAVVGRPEIQKFVGALQ 234
Query 239 GKQGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLRL 298
GK+ +G++ITTS F++GA+E E I+ +I L+ G +LAEL+ Y +G+ T E+ L
Sbjct 235 GKRAKKGIFITTSGFTKGAQEFVEHIDCKIILLSGIQLAELMWEYNIGLNHSATYEIKSL 294
Query 299 DEDFFD 304
D+D+F+
Sbjct 295 DQDYFN 300
>gi|302343460|ref|YP_003807989.1| restriction endonuclease [Desulfarculus baarsii DSM 2075]
gi|301640073|gb|ADK85395.1| restriction endonuclease [Desulfarculus baarsii DSM 2075]
Length=308
Score = 229 bits (585), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 125/311 (41%), Positives = 191/311 (62%), Gaps = 14/311 (4%)
Query 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
M IPD Q++M P+L YLAD S +D+ A+ +F ++D+E+A++LPSG+QR +R+
Sbjct 1 MPIPDFQSIMLPLLRYLADEMVHSNQDIYEALESQFTMTDEEKAELLPSGKQRVFINRIG 60
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHP-ERVDMAVLREFPSYIAFR-----ER 114
W+ ++M QAGL+D RG +++ TG+ V +++ + L +FPS++ FR
Sbjct 61 WAKSYMKQAGLIDAAGRGFYKISKTGKAVAADKSLDKIGINYLLKFPSFVTFRVGKGVSA 120
Query 115 TKAKQPVDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIR 174
+ A Q D G+ + E+ I + ++ E++ SP FE LV+
Sbjct 121 SIAAQDTDCG----DGNSPDRTAEEHIGLGVDTIMLKLKQELMSNIKACSPRFFEKLVVD 176
Query 175 LLEAMGYG--RAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHE 232
LL AMGYG R + T D GIDG+I++D LGLD IYVQAKR+ + +GRP+I +
Sbjct 177 LLLAMGYGGSRQESGMLTGKGSDEGIDGVINEDRLGLDVIYVQAKRW--EHAVGRPEIQK 234
Query 233 FAGALLGKQGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQT 292
FAGAL GK+ +GVYITTS F++ A + A I+++I L+DG RLA L+V + VGV VQ+
Sbjct 235 FAGALQGKRAKKGVYITTSCFTKDAYDFAGAIDSKIILVDGERLAGLMVEHNVGVAVVQS 294
Query 293 VELLRLDEDFF 303
+EL ++D D+F
Sbjct 295 IELKKVDMDYF 305
>gi|295696350|ref|YP_003589588.1| restriction endonuclease [Bacillus tusciae DSM 2912]
gi|295411952|gb|ADG06444.1| restriction endonuclease [Bacillus tusciae DSM 2912]
Length=308
Score = 229 bits (584), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 121/306 (40%), Positives = 190/306 (63%), Gaps = 7/306 (2%)
Query 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
M++PD Q++M P+L D + +VI +S +F L+D +R ++LPSGRQ +RV
Sbjct 1 MSVPDYQSIMLPLLKITEDCREHRLNEVIETLSSQFLLTDSDRKELLPSGRQPKFDNRVG 60
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP 120
W+ T++ +AGLL+ RG ++T+ G +VL+ +P ++ L +FP ++ F+ RT +
Sbjct 61 WARTYLVKAGLLESTGRGKFRITERGLEVLRTNPNEINNRFLSQFPEFLEFKNRTSTQGA 120
Query 121 VDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMG 180
D A S D +PE+++D+ R ++ E+L++ +P FE LV+ LL AMG
Sbjct 121 DDNDADLESLDR---TPEEILDSTHLSLRKSLADELLERIKNCTPKFFERLVVDLLVAMG 177
Query 181 YG--RAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGALL 238
YG R A + SGD GIDG+I++D LGLD IY+QAKR+ + T+GRP + FAG+L
Sbjct 178 YGGSRVDAGQALGQSGDDGIDGMINEDRLGLDVIYLQAKRW--EGTVGRPIVQAFAGSLE 235
Query 239 GKQGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLRL 298
G++ +G+ ITTS FS+ A+E RI +I LIDG +LA L++ + VGV V + ++
Sbjct 236 GQRARKGILITTSRFSQDAKEYVTRIEKKIVLIDGEQLANLMIDFNVGVTEVTRYVIKKV 295
Query 299 DEDFFD 304
D D+FD
Sbjct 296 DLDYFD 301
>gi|344339026|ref|ZP_08769956.1| restriction endonuclease [Thiocapsa marina 5811]
gi|343800946|gb|EGV18890.1| restriction endonuclease [Thiocapsa marina 5811]
Length=304
Score = 228 bits (582), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 127/305 (42%), Positives = 186/305 (61%), Gaps = 6/305 (1%)
Query 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
M IPD Q++M P+L + ADG + + + A+ EF L++DE+ ++LPSG+QR + +RV
Sbjct 1 MAIPDFQSIMLPLLRFCADGNEHTNQKALEALVQEFQLNEDEQKELLPSGQQRVIDNRVA 60
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP 120
W+ HM A LL+ RG ++TD G+ VLK P +++ +LR+FP Y+A R++ K + P
Sbjct 61 WARAHMKMAELLENTRRGVFRITDRGQDVLKGMPSEINLRLLRQFPEYVAARDKRK-ENP 119
Query 121 VDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMG 180
D + + +P + ++AA R + EIL + S FE +V+ +L MG
Sbjct 120 GDQDCSDFEEREGK-TPAEQLEAAYQTLRENLAAEILAQLKGGSAMFFERVVVEVLVKMG 178
Query 181 YG--RAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGALL 238
YG R A E SGD GIDGII +D LGLD IY+QAK++ + I RP+I +FAGAL
Sbjct 179 YGGSRKDAGEAIGRSGDEGIDGIIKEDRLGLDIIYIQAKKW--EDPISRPEIQKFAGALQ 236
Query 239 GKQGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLRL 298
GK+ +GV+ITTS F A+E A I +I LIDG +LA+ ++ + VGV EL RL
Sbjct 237 GKRARKGVFITTSRFCETAKEFAANIENKIILIDGQQLAQFMIDFGVGVATDAVYELKRL 296
Query 299 DEDFF 303
D D+F
Sbjct 297 DSDYF 301
>gi|320104887|ref|YP_004180478.1| restriction endonuclease [Isosphaera pallida ATCC 43644]
gi|319752169|gb|ADV63929.1| restriction endonuclease [Isosphaera pallida ATCC 43644]
Length=307
Score = 228 bits (582), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 125/306 (41%), Positives = 185/306 (61%), Gaps = 5/306 (1%)
Query 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
M +PD Q++M P+L L +G+ + +D+ A ++D F L+ ++R QMLPSG Q +RV
Sbjct 1 MPVPDFQSIMLPLLEALQNGEEVAVRDLTALLADRFMLTPEDRQQMLPSGEQTVFNNRVG 60
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP 120
W+ TH+ AGL+D PTRG V++T+ G +VL P V+ L+ FP+Y+ F + K
Sbjct 61 WAKTHLKNAGLIDNPTRGRVRITEVGMKVLAEKPATVNCRFLKRFPTYLKFTGQGAGKGG 120
Query 121 VDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMG 180
+ + + Q +P++L+DA+ R A E+L + S FE +V+RLL AMG
Sbjct 121 AEVGPNETTPETSQ-TPQELLDASYHALRKATLEELLIRLKACSSGHFEKVVVRLLLAMG 179
Query 181 YGR-AGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGALLG 239
YG AG T SGD GIDG+I +D LGLD + +QAKR+ + T+GRP I F G++
Sbjct 180 YGGVAGDGTVTGKSGDGGIDGMIKEDKLGLDVVCLQAKRW--EGTVGRPIIQGFVGSMDY 237
Query 240 KQGDRGVYITTSSFSRGAREEAERINA-RIELIDGARLAELLVRYRVGVQAVQTVELLRL 298
+ +GV ITTS FSR A+E +RI ++ LIDG LA+L++ + VGV + EL +
Sbjct 238 IRAKKGVIITTSQFSRDAQEFVDRIEGKKVVLIDGPTLADLMIEHNVGVTTTRRYELKDV 297
Query 299 DEDFFD 304
DFFD
Sbjct 298 SNDFFD 303
>gi|237755764|ref|ZP_04584368.1| Mrr restriction system protein [Sulfurihydrogenibium yellowstonense
SS-5]
gi|237692074|gb|EEP61078.1| Mrr restriction system protein [Sulfurihydrogenibium yellowstonense
SS-5]
Length=302
Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 118/308 (39%), Positives = 187/308 (61%), Gaps = 14/308 (4%)
Query 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
M IP Q LM P+L ++DG+ S ++VI +++EF LS+++R + LPSGRQR +RV+
Sbjct 1 MAIPGYQDLMLPLLKLVSDGKEYSLREVIERLAEEFNLSEEDRNEFLPSGRQRVFDNRVN 60
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHP--ERVDMAVLREFPSYIAFRERTKAK 118
W+ T++ +AGLL+ P RG ++++ G+Q L +P +++ L +F S+ F R +
Sbjct 61 WAKTYLLKAGLLESPKRGCIKISKVGKQFLADNPYLDKLTNKDLMQFESFKEFISRGNEE 120
Query 119 QPVDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEA 178
+ +P ++I+ + E A+ E+L+K SP FE LVI LL
Sbjct 121 NAAPHIDPK--------TPTEIIEQKIQEVNEALADELLRKIKNSSPKFFEKLVIDLLLK 172
Query 179 MGYG--RAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGA 236
MGYG E SGD GIDG I +D LGLD IY+QAKR+ + +GRP+I +F GA
Sbjct 173 MGYGGSEKEMAEVVGKSGDEGIDGTIKEDKLGLDVIYIQAKRW--EGPVGRPEIQKFVGA 230
Query 237 LLGKQGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELL 296
L GK+ +GV+ TTS+F+ A++ + ++ LIDG +LA+L+++Y VGV + +E+
Sbjct 231 LAGKKAKKGVFFTTSTFTDEAKDYVSHLEQKVVLIDGNKLADLMIKYNVGVSVERVIEIK 290
Query 297 RLDEDFFD 304
R+D D+F+
Sbjct 291 RIDSDYFE 298
>gi|119471839|ref|ZP_01614172.1| methylated adenine and cytosine restriction protein [Alteromonadales
bacterium TW-7]
gi|119445329|gb|EAW26618.1| methylated adenine and cytosine restriction protein [Alteromonadales
bacterium TW-7]
Length=309
Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 117/308 (38%), Positives = 187/308 (61%), Gaps = 5/308 (1%)
Query 3 IPDAQTLMRPIL--AYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
IP+ Q MRP L A+ A G+ +DVI ++++F L+D+E+ + LPSGRQ + +RV
Sbjct 2 IPNYQQFMRPFLEVAHRAHGREVKLRDVINELAEQFNLTDEEKTETLPSGRQPILDNRVG 61
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP 120
W+ T++++AGLL+ R H +T G + L+ +D L++F ++AF E+
Sbjct 62 WARTYLTKAGLLEATRRAHFVITTRGIKALEDESTVIDKNYLKQFDEFVAFSEQKNEAAV 121
Query 121 VDATAKRPSGDDVQ-VSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAM 179
+ A S D+++ ++P++ + A A+ ++L + ++P FE+L+I LL AM
Sbjct 122 ITAPINPQSNDNIEDITPDEALRNAYKAINDALTSDLLSRTRKVTPAFFEELLIELLIAM 181
Query 180 GYGRAG--AVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGAL 237
GYG G A +GD GIDG+I QDPLG+D+IY+QAKRYA +G I +F GAL
Sbjct 182 GYGGTGEGAAHALGKTGDNGIDGVIDQDPLGVDQIYIQAKRYAKGNNVGAGDIRDFFGAL 241
Query 238 LGKQGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLR 297
K+ +G++ITTS F+ A E A+ + RI LI+G LA L++RY +G + Q + L +
Sbjct 242 NLKKAQKGIFITTSEFTSSAIETAQNLGTRIVLINGTELANLMLRYSIGSRDEQVLHLKK 301
Query 298 LDEDFFDG 305
+DE+FF+
Sbjct 302 IDEEFFEN 309
>gi|338536845|ref|YP_004670179.1| restriction endonuclease [Myxococcus fulvus HW-1]
gi|337262941|gb|AEI69101.1| restriction endonuclease [Myxococcus fulvus HW-1]
Length=305
Score = 226 bits (577), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 125/308 (41%), Positives = 188/308 (62%), Gaps = 12/308 (3%)
Query 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
M IPD Q+ M P+L DG+ + + + A++ EF + +ER ++LPSGRQR +++RV
Sbjct 1 MPIPDFQSAMLPVLRLAQDGKDHTLGEAVEAIAVEFKATAEERNELLPSGRQRRIHNRVG 60
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP 120
W+ T++ +AGL++ RG ++T G++VL+ P R+DM L +FP Y AF A
Sbjct 61 WAKTYLQKAGLVEPNGRGRFRITSRGQEVLQRKPNRIDMKFLEQFPEYNAF-----AALR 115
Query 121 VDATAKRPSGDDVQV---SPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLE 177
DA PS ++ +PE++++ + E R + E+L++ P FE LV+ LL
Sbjct 116 HDAAEAEPSTPELSSATETPEEILEESYQELRRRLADELLERIKACDPKFFEKLVVDLLV 175
Query 178 AMGYG--RAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAG 235
AMGYG R A + SGD GIDGII +D LGLD +Y+QAKR+ +GRP + F G
Sbjct 176 AMGYGGSRKDAGQAVGQSGDEGIDGIIKEDRLGLDVVYIQAKRWT--NNVGRPVVQAFTG 233
Query 236 ALLGKQGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVEL 295
+L G++ +GV ITTS FSR AR+ ++I +I LIDG LA+L++ + VGV V T +
Sbjct 234 SLEGQRARKGVLITTSDFSREARDYVKQIEKKIVLIDGVELAKLMIDHGVGVTEVATYTV 293
Query 296 LRLDEDFF 303
+LD D+F
Sbjct 294 KKLDLDYF 301
>gi|323136815|ref|ZP_08071896.1| restriction endonuclease [Methylocystis sp. ATCC 49242]
gi|322398132|gb|EFY00653.1| restriction endonuclease [Methylocystis sp. ATCC 49242]
Length=304
Score = 226 bits (577), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 119/306 (39%), Positives = 192/306 (63%), Gaps = 4/306 (1%)
Query 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
M+IPD Q+LM P+L A G+ + +VI + D+ LS ++R+Q+LPSG Q +RVH
Sbjct 1 MSIPDYQSLMLPVLLACAGGETRIG-EVIEKLGDQLALSPEDRSQLLPSGAQTVFANRVH 59
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP 120
W+ T++ +AGL++ RG+ Q+T GR+V+ P R+D A LR+F + F + K
Sbjct 60 WAKTYLGKAGLVESTRRGYFQITARGREVVAKKPVRIDNAFLRQFEEFEKFTRGSPEKSS 119
Query 121 VDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMG 180
D A P+ +V+ +P++L+ A + A++ ++L++ P FE L++ LL +MG
Sbjct 120 HDQGASEPA-VEVEETPDELMRLAHKKIEASLARDLLERVRKAPPDFFERLIVSLLLSMG 178
Query 181 YGRA--GAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGALL 238
YG + A SGD G+DG+I QD LGLDR+Y+QAKRY +IG I +F G+L
Sbjct 179 YGGSVTDAGRALGRSGDDGVDGVIDQDALGLDRVYIQAKRYGEGNSIGSGAIRDFFGSLD 238
Query 239 GKQGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLRL 298
+ +G+++TTS FS A E A+ ++ RI LIDG +L++L++R+ VG + T+++ ++
Sbjct 239 RHKATKGLFVTTSGFSPSAIETAQYLSKRIVLIDGVQLSKLMIRHNVGCRVEDTLQIKKI 298
Query 299 DEDFFD 304
DEDFF+
Sbjct 299 DEDFFE 304
>gi|336115221|ref|YP_004569988.1| restriction endonuclease [Bacillus coagulans 2-6]
gi|335368651|gb|AEH54602.1| restriction endonuclease [Bacillus coagulans 2-6]
Length=306
Score = 226 bits (576), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 116/306 (38%), Positives = 184/306 (61%), Gaps = 4/306 (1%)
Query 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
MT+PD QT M P L L D + +++ ++D F L+D ++ + LPSG+Q +R+
Sbjct 1 MTVPDYQTFMLPFLKILGDRNEHTLQEMYIKLADYFSLTDADKKEYLPSGKQLKYKNRIG 60
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP 120
W+ T++ +AGLL++ RG +++ G VL +PE++D+ L F + FR +
Sbjct 61 WARTYLKKAGLLEQVGRGRFTISEQGLSVLNKNPEKIDVKFLERFNEFREFRSNKNSTDH 120
Query 121 VDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMG 180
D+T P+ + +SPE+++D++ + ++ E+L+ + SP FE LV+ LL AMG
Sbjct 121 KDSTETLPNNRESDLSPEEILDSSFRDITRSLMDELLRTVKSCSPEFFEKLVVDLLVAMG 180
Query 181 YG--RAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGALL 238
YG A A + +GD GIDGII +D LGLD IY+QAKR+ + ++GRP + FAG+L
Sbjct 181 YGGTHADAGQAIGRTGDDGIDGIIKEDKLGLDVIYIQAKRW--EGSVGRPVVQAFAGSLE 238
Query 239 GKQGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLRL 298
G + +GV ITTS F+ A++ +RI +I LIDG LAEL++ VGV T + +
Sbjct 239 GNRARKGVLITTSRFTEEAKDYVKRIEKKIVLIDGETLAELMIDNNVGVSPKITYIIKDI 298
Query 299 DEDFFD 304
D D+F+
Sbjct 299 DSDYFN 304
>gi|330997041|ref|ZP_08320903.1| restriction endonuclease [Paraprevotella xylaniphila YIT 11841]
gi|329571539|gb|EGG53221.1| restriction endonuclease [Paraprevotella xylaniphila YIT 11841]
Length=306
Score = 226 bits (576), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 121/307 (40%), Positives = 181/307 (59%), Gaps = 10/307 (3%)
Query 3 IPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVHWS 62
IPD Q+ M P L L DG S ++ A+ EF L++ + +MLPS R V W+
Sbjct 2 IPDFQSCMLPFLRKLEDGSVHSMTEIQNALIREFHLTETDVKEMLPSNRTTRFRSNVGWA 61
Query 63 LTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQPVD 122
THM +AGLL+ P R ++T+ G ++L+ PE ++M +L +P+Y + +
Sbjct 62 KTHMQKAGLLETPQRAQYRITEAGLRLLQTRPEHINMKLLFNYPAYKEWIALSNRNSEPK 121
Query 123 ATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMGYG 182
+++ S +Q +P+ +++ + R + ++L++ L P FE LVI+LL AMGYG
Sbjct 122 RNSRQESECAIQ-TPDIIMEEEYKKLRNILAQDLLERILKKDPGFFEALVIKLLVAMGYG 180
Query 183 -----RAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGAL 237
AG V SGD GIDGII +D LGLD IY+QAKR+ + + RP++ +F GAL
Sbjct 181 GSLNEAAGMV--VGKSGDEGIDGIIKEDKLGLDNIYIQAKRW--NNVVERPEVQKFVGAL 236
Query 238 LGKQGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLR 297
GK +G++ITTSSFSRGARE + N +I LIDG +L E ++ Y +GV T E+ R
Sbjct 237 AGKGATKGIFITTSSFSRGAREFKPQNNIKIVLIDGNQLCEYMIDYNIGVFTANTFEVKR 296
Query 298 LDEDFFD 304
+D DFF+
Sbjct 297 IDIDFFE 303
>gi|148358355|ref|YP_001249562.1| Mrr restriction system protein [Legionella pneumophila str. Corby]
gi|148280128|gb|ABQ54216.1| Mrr restriction system protein (EcoKMrr) [Legionella pneumophila
str. Corby]
Length=325
Score = 225 bits (574), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 118/306 (39%), Positives = 181/306 (60%), Gaps = 7/306 (2%)
Query 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
MTIP Q M P+L L D + +I+ M D F LSDDER ++L SGR + RVH
Sbjct 19 MTIPTYQECMLPMLKVLKDNSNIKSTRLISLMGDWFHLSDDEREELLSSGRTTILRTRVH 78
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP 120
W+ ++ QAGL++ P RG+V +T+ G QVL+ +P +D L++FP +I F ER+K +
Sbjct 79 WAKVYLKQAGLVEYPKRGYVAITEKGIQVLQKNPSNIDTNYLKKFPDFIRFIERSKTESQ 138
Query 121 VDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMG 180
+ ++ SP++++ + E+L+ + SP FE LV++++ ++G
Sbjct 139 QVSNSEYSEN----YSPDEVLTRTFERMKNQTCEELLEVIKSSSPQFFEKLVVQVIVSLG 194
Query 181 YGRA--GAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQ-TIGRPKIHEFAGAL 237
YG + A + SGD G+DG+I +D LGL+ IY+QAK D+ +GRP I +F GAL
Sbjct 195 YGGSLQEAGQAIGKSGDGGVDGVIKEDRLGLELIYLQAKLKKDDKYNVGRPDIQKFYGAL 254
Query 238 LGKQGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELLR 297
GKQ +G++ITT+ FS ARE + I+ +I L++G L EL+ Y +G+ T E+
Sbjct 255 QGKQAKKGIFITTTDFSNEAREYLKVIDKKIILLNGKELIELMWEYNIGLNVSATYEVKD 314
Query 298 LDEDFF 303
LD DFF
Sbjct 315 LDLDFF 320
>gi|339442916|ref|YP_004708921.1| hypothetical protein CXIVA_18520 [Clostridium sp. SY8519]
gi|338902317|dbj|BAK47819.1| hypothetical protein CXIVA_18520 [Clostridium sp. SY8519]
Length=306
Score = 225 bits (574), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 117/308 (38%), Positives = 184/308 (60%), Gaps = 11/308 (3%)
Query 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
M +P L DG+ +AK+V ++ E +SD +R +MLPSG+Q T +RV
Sbjct 1 MAVPKFFEFFEGFLRATQDGELHTAKEVREIIAKEMNISDADRLEMLPSGKQTTFANRVA 60
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAFRERTKAKQP 120
W+ T++ +AGL++ PTRG ++T+ G+ L + E++D+ L + F + +K
Sbjct 61 WARTYLDKAGLIETPTRGKYRITEAGKNALTS-GEKIDLKYLERSDKFKEFHKAATSKSA 119
Query 121 VDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEAMG 180
D D+ SP + +DAA + A + +++ + + L+P+ FE LV++LL MG
Sbjct 120 EDTDQDNTESDE---SPMETLDAAFQQVNATLASQLMDEVMKLTPSEFERLVVKLLLKMG 176
Query 181 YG----RAGAVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGA 236
YG AG V T S D GIDGII +D LG IY+QAK++AVDQT+G+P+I +F GA
Sbjct 177 YGSGIEEAGMV--TQPSNDGGIDGIIKEDQLGFSHIYIQAKQWAVDQTVGKPEIQKFVGA 234
Query 237 LLGKQGDRGVYITTSSFSRGAREEAER-INARIELIDGARLAELLVRYRVGVQAVQTVEL 295
L G+Q +G++ITT+ FS GA + A+ + A++ L+DG L +L++++ VGV E+
Sbjct 235 LQGQQAQKGLFITTAKFSSGALQFADNLLGAKVVLVDGTALTKLMIKHNVGVSVEHIYEV 294
Query 296 LRLDEDFF 303
RLD DFF
Sbjct 295 KRLDSDFF 302
>gi|154245042|ref|YP_001416000.1| restriction endonuclease [Xanthobacter autotrophicus Py2]
gi|154159127|gb|ABS66343.1| restriction endonuclease [Xanthobacter autotrophicus Py2]
Length=310
Score = 225 bits (574), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 125/307 (41%), Positives = 197/307 (65%), Gaps = 5/307 (1%)
Query 1 MTIPDAQTLMRPILAYLADGQAKSAKDVIAAMSDEFGLSDDERAQMLPSGRQRTMYDRVH 60
M IPD QTLM P+L A+G+ + ++ + ++FGLS+ ER +LPSGRQ+ +++R+H
Sbjct 1 MPIPDYQTLMLPLLKIAAEGETR-IPELEERICNDFGLSEAEREALLPSGRQKVIHNRLH 59
Query 61 WSLTHMSQAGLLDRPTRGHVQVTDTGRQVLKAHPERVDMAVLREFPSYIAF--RERTKAK 118
WS ++++AGL+D P+RG + GR++L +P R+D+ +L +P++ F R A
Sbjct 60 WSKFYLTRAGLMDVPSRGRFVASPAGRELLARNPPRIDIPLLETYPAFREFYRNAREGAG 119
Query 119 QPVDATAKRPSGDDVQVSPEDLIDAALAENRAAVEGEILKKALTLSPTGFEDLVIRLLEA 178
+ P V+PE+ ++AA A +AA+ ++L + L P FE +++ LL A
Sbjct 120 ENEVGAEVAPPPVPATVTPEEQVEAAYAALQAALRQDLLARILQNPPAFFERVIVTLLVA 179
Query 179 MGYGRAG--AVERTSASGDAGIDGIISQDPLGLDRIYVQAKRYAVDQTIGRPKIHEFAGA 236
MGYG + A ++ SGD G+DG+I++D LGLDR+YVQAKRYA +GRP++ F G+
Sbjct 180 MGYGGSHRDAAQQLGRSGDGGVDGVINEDRLGLDRVYVQAKRYAPGNAVGRPEVQGFVGS 239
Query 237 LLGKQGDRGVYITTSSFSRGAREEAERINARIELIDGARLAELLVRYRVGVQAVQTVELL 296
L+G +GV++TTS+FS AR+ + R+ LIDG +LA+L++ + VGV+ + VE
Sbjct 240 LVGLGATKGVFVTTSAFSTQARDFVRHLTQRVILIDGQQLADLMIEHNVGVRLTRAVEFK 299
Query 297 RLDEDFF 303
RLDEDFF
Sbjct 300 RLDEDFF 306
Lambda K H
0.318 0.135 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 518193349062
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40