BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2529
Length=463
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609666|ref|NP_217045.1| hypothetical protein Rv2529 [Mycoba... 929 0.0
gi|15842063|ref|NP_337100.1| hypothetical protein MT2604 [Mycoba... 927 0.0
gi|254366734|ref|ZP_04982777.1| hypothetical protein TBHG_02464 ... 926 0.0
gi|31793710|ref|NP_856203.1| hypothetical protein Mb2558 [Mycoba... 926 0.0
gi|289575233|ref|ZP_06455460.1| conserved hypothetical protein [... 922 0.0
gi|340627544|ref|YP_004745996.1| hypothetical protein MCAN_25691... 921 0.0
gi|253798392|ref|YP_003031393.1| hypothetical protein TBMG_01444... 681 0.0
gi|308232165|ref|ZP_07415139.2| hypothetical protein TMAG_02332 ... 637 0.0
gi|289448176|ref|ZP_06437920.1| ERCC4 domain-containing protein ... 604 9e-171
gi|289751145|ref|ZP_06510523.1| hypothetical protein TBDG_03985 ... 446 4e-123
gi|296165980|ref|ZP_06848435.1| ERCC4 domain protein [Mycobacter... 401 1e-109
gi|145225765|ref|YP_001136443.1| ERCC4 domain-containing protein... 393 4e-107
gi|315446122|ref|YP_004079001.1| ERCC4 domain-containing protein... 392 6e-107
gi|209418092|ref|YP_002274121.1| ERCC4 domain protein [Mycobacte... 391 1e-106
gi|169245912|gb|ACA50933.1| ERCC4 domain protein [Mycobacterium ... 380 2e-103
gi|158317115|ref|YP_001509623.1| cyclic nucleotide-binding prote... 371 2e-100
gi|119718028|ref|YP_924993.1| ERCC4 domain-containing protein [N... 315 8e-84
gi|226362333|ref|YP_002780111.1| hypothetical protein ROP_29190 ... 303 4e-80
gi|317126638|ref|YP_004100750.1| ERCC4 domain protein [Intraspor... 298 2e-78
gi|262202777|ref|YP_003273985.1| ERCC4 domain-containing protein... 280 3e-73
gi|160902980|ref|YP_001568561.1| hypothetical protein Pmob_1537 ... 113 8e-23
gi|304318058|ref|YP_003853203.1| ERCC4 domain-containing protein... 110 4e-22
gi|332799960|ref|YP_004461459.1| ERCC4 domain-containing protein... 109 9e-22
gi|333898123|ref|YP_004471997.1| ERCC4 domain protein [Thermoana... 102 1e-19
gi|291280488|ref|YP_003497323.1| hypothetical protein DEFDS_2119... 90.9 4e-16
gi|302343262|ref|YP_003807791.1| ERCC4 domain protein [Desulfarc... 74.7 3e-11
gi|78356966|ref|YP_388415.1| hypothetical protein Dde_1923 [Desu... 74.3 4e-11
gi|300088768|ref|YP_003759290.1| ERCC4 domain-containing protein... 73.9 5e-11
gi|78355952|ref|YP_387401.1| hypothetical protein Dde_0905 [Desu... 73.9 5e-11
gi|342906348|gb|ABB37706.2| ERCC4 domain protein [Desulfovibrio ... 73.9 5e-11
gi|317153302|ref|YP_004121350.1| ERCC4 domain-containing protein... 72.8 1e-10
gi|89885865|ref|YP_516063.1| ERCC4 [Rhodoferax ferrireducens T11... 59.3 1e-06
gi|226359861|ref|YP_002777639.1| hypothetical protein ROP_04470 ... 57.4 5e-06
gi|116749850|ref|YP_846537.1| hypothetical protein Sfum_2422 [Sy... 53.9 6e-05
gi|303246620|ref|ZP_07332898.1| ERCC4 domain protein [Desulfovib... 53.9 6e-05
gi|116749931|ref|YP_846618.1| hypothetical protein Sfum_2504 [Sy... 52.4 2e-04
gi|283852579|ref|ZP_06369846.1| ERCC4 domain protein [Desulfovib... 52.0 2e-04
gi|291452963|ref|ZP_06592353.1| modification methylase SalI [Str... 51.6 3e-04
gi|328952270|ref|YP_004369604.1| ERCC4 domain protein [Desulfoba... 48.1 0.003
gi|296271368|ref|YP_003654000.1| hypothetical protein Tbis_3417 ... 46.6 0.008
gi|340624705|ref|YP_004743158.1| Hef nuclease [Methanococcus mar... 44.7 0.031
gi|117927427|ref|YP_871978.1| putative Lsr2-like protein [Acidot... 44.7 0.039
gi|339727894|emb|CCC39004.1| ATP-dependent RNA helicase/nuclease... 44.3 0.049
gi|332158155|ref|YP_004423434.1| Hef nuclease [Pyrococcus sp. NA... 43.9 0.056
gi|110666996|ref|YP_656807.1| Hef nuclease [Haloquadratum walsby... 43.9 0.056
gi|150399457|ref|YP_001323224.1| Hef nuclease [Methanococcus van... 43.5 0.074
gi|336120386|ref|YP_004575171.1| hypothetical protein MLP_47540 ... 43.5 0.082
gi|271967651|ref|YP_003341847.1| hypothetical protein Sros_6389 ... 43.1 0.098
gi|271970317|ref|YP_003344513.1| hypothetical protein Sros_9149 ... 42.7 0.14
gi|120601137|ref|YP_965537.1| hypothetical protein Dvul_0086 [De... 42.7 0.14
>gi|15609666|ref|NP_217045.1| hypothetical protein Rv2529 [Mycobacterium tuberculosis H37Rv]
gi|121638412|ref|YP_978636.1| hypothetical protein BCG_2550 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148662366|ref|YP_001283889.1| hypothetical protein MRA_2556 [Mycobacterium tuberculosis H37Ra]
47 more sequence titles
Length=463
Score = 929 bits (2401), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/463 (99%), Positives = 463/463 (100%), Gaps = 0/463 (0%)
Query 1 VHLAHRVASSRDTPSSSATPNAVSGSASNAADRPCLVRPPTAPPWAHGPRLRRDPTGGGS 60
+HLAHRVASSRDTPSSSATPNAVSGSASNAADRPCLVRPPTAPPWAHGPRLRRDPTGGGS
Sbjct 1 MHLAHRVASSRDTPSSSATPNAVSGSASNAADRPCLVRPPTAPPWAHGPRLRRDPTGGGS 60
Query 61 TPSIVLSRSTDRSKDGHRIVPAGARKSGVRASTGRLPSTRKTTRSPDCRPSASRTAFGTV 120
TPSIVLSRSTDRSKDGHRIVPAGARKSGVRASTGRLPSTRKTTRSPDCRPSASRTAFGTV
Sbjct 61 TPSIVLSRSTDRSKDGHRIVPAGARKSGVRASTGRLPSTRKTTRSPDCRPSASRTAFGTV 120
Query 121 TCPFDVTMGSSECLLHRCRTPPVPSHSVELLVAANPAEDSRLPYLIRLPVGAGLVFATSD 180
TCPFDVTMGSSECLLHRCRTPPVPSHSVELLVAANPAEDSRLPYLIRLPVGAGLVFATSD
Sbjct 121 TCPFDVTMGSSECLLHRCRTPPVPSHSVELLVAANPAEDSRLPYLIRLPVGAGLVFATSD 180
Query 181 VWPRTKALYCHRLDIADWPADPVVVDRVELRSCSRRGAAIDVVAARARENRSQLVHTMAR 240
VWPRTKALYCHRLDIADWPADPVVVDRVELRSCSRRGAAIDVVAARARENRSQLVHTMAR
Sbjct 181 VWPRTKALYCHRLDIADWPADPVVVDRVELRSCSRRGAAIDVVAARARENRSQLVHTMAR 240
Query 241 GRQVVFWQSPKTRKQSRPGVRTPTARAAGIPELHIVVDAHERYPYTFADKPAKTTREALP 300
GRQVVFWQSPKTRKQSRPGVRTPTARAAGIPELHIVVDAHERYPYTFADKPAKTTREALP
Sbjct 241 GRQVVFWQSPKTRKQSRPGVRTPTARAAGIPELHIVVDAHERYPYTFADKPAKTTREALP 300
Query 301 CGDYGLKVAGQLVAAVERKALADLTSGVLNGNLKYQLTELAALPRAAVVVEDRYSEIFAH 360
CGDYGLKVAGQLVAAVERKALADLTSGVLNGNLKYQLTELAALPRAAVVVEDRYSEIFAH
Sbjct 301 CGDYGLKVAGQLVAAVERKALADLTSGVLNGNLKYQLTELAALPRAAVVVEDRYSEIFAH 360
Query 361 SFARPTAIADGLAELQIGFPNVPIVFCQTRKLAQEYTYRYLAAALTWFVDDADATTVFEP 420
SFARPTAIADGLAELQIGFPNVPIVFCQTRKLAQEYTYRYLAAALTWFVDDADATTVFEP
Sbjct 361 SFARPTAIADGLAELQIGFPNVPIVFCQTRKLAQEYTYRYLAAALTWFVDDADATTVFEP 420
Query 421 AAAEPEPSSAELRAWAKSVGLPVSDRGRLRPQILQAWRAAHPR 463
AAAEPEPSSAELRAWAKSVGLPVSDRGRLRPQILQAWRAAHPR
Sbjct 421 AAAEPEPSSAELRAWAKSVGLPVSDRGRLRPQILQAWRAAHPR 463
>gi|15842063|ref|NP_337100.1| hypothetical protein MT2604 [Mycobacterium tuberculosis CDC1551]
gi|13882343|gb|AAK46914.1| hypothetical protein MT2604 [Mycobacterium tuberculosis CDC1551]
Length=463
Score = 927 bits (2395), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/463 (99%), Positives = 462/463 (99%), Gaps = 0/463 (0%)
Query 1 VHLAHRVASSRDTPSSSATPNAVSGSASNAADRPCLVRPPTAPPWAHGPRLRRDPTGGGS 60
+HLAHRVASSRDTPSSSATPNAVSGSASNAADRPCLVRPPTAPPWAHGPRLRRDPTGGGS
Sbjct 1 MHLAHRVASSRDTPSSSATPNAVSGSASNAADRPCLVRPPTAPPWAHGPRLRRDPTGGGS 60
Query 61 TPSIVLSRSTDRSKDGHRIVPAGARKSGVRASTGRLPSTRKTTRSPDCRPSASRTAFGTV 120
TPSIVLSRSTDRSKDGHRIVPAGARKSGVRASTGRLPSTRKTTRSPDCRPSASRTAFG V
Sbjct 61 TPSIVLSRSTDRSKDGHRIVPAGARKSGVRASTGRLPSTRKTTRSPDCRPSASRTAFGXV 120
Query 121 TCPFDVTMGSSECLLHRCRTPPVPSHSVELLVAANPAEDSRLPYLIRLPVGAGLVFATSD 180
TCPFDVTMGSSECLLHRCRTPPVPSHSVELLVAANPAEDSRLPYLIRLPVGAGLVFATSD
Sbjct 121 TCPFDVTMGSSECLLHRCRTPPVPSHSVELLVAANPAEDSRLPYLIRLPVGAGLVFATSD 180
Query 181 VWPRTKALYCHRLDIADWPADPVVVDRVELRSCSRRGAAIDVVAARARENRSQLVHTMAR 240
VWPRTKALYCHRLDIADWPADPVVVDRVELRSCSRRGAAIDVVAARARENRSQLVHTMAR
Sbjct 181 VWPRTKALYCHRLDIADWPADPVVVDRVELRSCSRRGAAIDVVAARARENRSQLVHTMAR 240
Query 241 GRQVVFWQSPKTRKQSRPGVRTPTARAAGIPELHIVVDAHERYPYTFADKPAKTTREALP 300
GRQVVFWQSPKTRKQSRPGVRTPTARAAGIPELHIVVDAHERYPYTFADKPAKTTREALP
Sbjct 241 GRQVVFWQSPKTRKQSRPGVRTPTARAAGIPELHIVVDAHERYPYTFADKPAKTTREALP 300
Query 301 CGDYGLKVAGQLVAAVERKALADLTSGVLNGNLKYQLTELAALPRAAVVVEDRYSEIFAH 360
CGDYGLKVAGQLVAAVERKALADLTSGVLNGNLKYQLTELAALPRAAVVVEDRYSEIFAH
Sbjct 301 CGDYGLKVAGQLVAAVERKALADLTSGVLNGNLKYQLTELAALPRAAVVVEDRYSEIFAH 360
Query 361 SFARPTAIADGLAELQIGFPNVPIVFCQTRKLAQEYTYRYLAAALTWFVDDADATTVFEP 420
SFARPTAIADGLAELQIGFPNVPIVFCQTRKLAQEYTYRYLAAALTWFVDDADATTVFEP
Sbjct 361 SFARPTAIADGLAELQIGFPNVPIVFCQTRKLAQEYTYRYLAAALTWFVDDADATTVFEP 420
Query 421 AAAEPEPSSAELRAWAKSVGLPVSDRGRLRPQILQAWRAAHPR 463
AAAEPEPSSAELRAWAKSVGLPVSDRGRLRPQILQAWRAAHPR
Sbjct 421 AAAEPEPSSAELRAWAKSVGLPVSDRGRLRPQILQAWRAAHPR 463
>gi|254366734|ref|ZP_04982777.1| hypothetical protein TBHG_02464 [Mycobacterium tuberculosis str.
Haarlem]
gi|134152245|gb|EBA44290.1| hypothetical protein TBHG_02464 [Mycobacterium tuberculosis str.
Haarlem]
Length=463
Score = 926 bits (2394), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/463 (99%), Positives = 462/463 (99%), Gaps = 0/463 (0%)
Query 1 VHLAHRVASSRDTPSSSATPNAVSGSASNAADRPCLVRPPTAPPWAHGPRLRRDPTGGGS 60
+HLAHRVASSRDTPSSSATPNAVSGSASNAADRPCLVRPPTAPPWAHGPRLRRDPTGGGS
Sbjct 1 MHLAHRVASSRDTPSSSATPNAVSGSASNAADRPCLVRPPTAPPWAHGPRLRRDPTGGGS 60
Query 61 TPSIVLSRSTDRSKDGHRIVPAGARKSGVRASTGRLPSTRKTTRSPDCRPSASRTAFGTV 120
TPSIVLSRSTDRSKDGHRIVPA ARKSGVRASTGRLPSTRKTTRSPDCRPSASRTAFGTV
Sbjct 61 TPSIVLSRSTDRSKDGHRIVPAEARKSGVRASTGRLPSTRKTTRSPDCRPSASRTAFGTV 120
Query 121 TCPFDVTMGSSECLLHRCRTPPVPSHSVELLVAANPAEDSRLPYLIRLPVGAGLVFATSD 180
TCPFDVTMGSSECLLHRCRTPPVPSHSVELLVAANPAEDSRLPYLIRLPVGAGLVFATSD
Sbjct 121 TCPFDVTMGSSECLLHRCRTPPVPSHSVELLVAANPAEDSRLPYLIRLPVGAGLVFATSD 180
Query 181 VWPRTKALYCHRLDIADWPADPVVVDRVELRSCSRRGAAIDVVAARARENRSQLVHTMAR 240
VWPRTKALYCHRLDIADWPADPVVVDRVELRSCSRRGAAIDVVAARARENRSQLVHTMAR
Sbjct 181 VWPRTKALYCHRLDIADWPADPVVVDRVELRSCSRRGAAIDVVAARARENRSQLVHTMAR 240
Query 241 GRQVVFWQSPKTRKQSRPGVRTPTARAAGIPELHIVVDAHERYPYTFADKPAKTTREALP 300
GRQVVFWQSPKTRKQSRPGVRTPTARAAGIPELHIVVDAHERYPYTFADKPAKTTREALP
Sbjct 241 GRQVVFWQSPKTRKQSRPGVRTPTARAAGIPELHIVVDAHERYPYTFADKPAKTTREALP 300
Query 301 CGDYGLKVAGQLVAAVERKALADLTSGVLNGNLKYQLTELAALPRAAVVVEDRYSEIFAH 360
CGDYGLKVAGQLVAAVERKALADLTSGVLNGNLKYQLTELAALPRAAVVVEDRYSEIFAH
Sbjct 301 CGDYGLKVAGQLVAAVERKALADLTSGVLNGNLKYQLTELAALPRAAVVVEDRYSEIFAH 360
Query 361 SFARPTAIADGLAELQIGFPNVPIVFCQTRKLAQEYTYRYLAAALTWFVDDADATTVFEP 420
SFARPTAIADGLAELQIGFPNVPIVFCQTRKLAQEYTYRYLAAALTWFVDDADATTVFEP
Sbjct 361 SFARPTAIADGLAELQIGFPNVPIVFCQTRKLAQEYTYRYLAAALTWFVDDADATTVFEP 420
Query 421 AAAEPEPSSAELRAWAKSVGLPVSDRGRLRPQILQAWRAAHPR 463
AAAEPEPSSAELRAWAKSVGLPVSDRGRLRPQILQAWRAAHPR
Sbjct 421 AAAEPEPSSAELRAWAKSVGLPVSDRGRLRPQILQAWRAAHPR 463
>gi|31793710|ref|NP_856203.1| hypothetical protein Mb2558 [Mycobacterium bovis AF2122/97]
gi|31619304|emb|CAD94742.1| HYPOTHETICAL PROTEIN Mb2558 [Mycobacterium bovis AF2122/97]
Length=463
Score = 926 bits (2394), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/463 (99%), Positives = 462/463 (99%), Gaps = 0/463 (0%)
Query 1 VHLAHRVASSRDTPSSSATPNAVSGSASNAADRPCLVRPPTAPPWAHGPRLRRDPTGGGS 60
+HLAHRVASSRDTPSSSATPNAVSGSASNAADRPCLVRPPTAPPWAHGPRLRRDPTGGGS
Sbjct 1 MHLAHRVASSRDTPSSSATPNAVSGSASNAADRPCLVRPPTAPPWAHGPRLRRDPTGGGS 60
Query 61 TPSIVLSRSTDRSKDGHRIVPAGARKSGVRASTGRLPSTRKTTRSPDCRPSASRTAFGTV 120
TPSIVLSRSTDRSKDGHRIVPAGARKSGVRAST RLPSTRKTTRSPDCRPSASRTAFGTV
Sbjct 61 TPSIVLSRSTDRSKDGHRIVPAGARKSGVRASTERLPSTRKTTRSPDCRPSASRTAFGTV 120
Query 121 TCPFDVTMGSSECLLHRCRTPPVPSHSVELLVAANPAEDSRLPYLIRLPVGAGLVFATSD 180
TCPFDVTMGSSECLLHRCRTPPVPSHSVELLVAANPAEDSRLPYLIRLPVGAGLVFATSD
Sbjct 121 TCPFDVTMGSSECLLHRCRTPPVPSHSVELLVAANPAEDSRLPYLIRLPVGAGLVFATSD 180
Query 181 VWPRTKALYCHRLDIADWPADPVVVDRVELRSCSRRGAAIDVVAARARENRSQLVHTMAR 240
VWPRTKALYCHRLDIADWPADPVVVDRVELRSCSRRGAAIDVVAARARENRSQLVHTMAR
Sbjct 181 VWPRTKALYCHRLDIADWPADPVVVDRVELRSCSRRGAAIDVVAARARENRSQLVHTMAR 240
Query 241 GRQVVFWQSPKTRKQSRPGVRTPTARAAGIPELHIVVDAHERYPYTFADKPAKTTREALP 300
GRQVVFWQSPKTRKQSRPGVRTPTARAAGIPELHIVVDAHERYPYTFADKPAKTTREALP
Sbjct 241 GRQVVFWQSPKTRKQSRPGVRTPTARAAGIPELHIVVDAHERYPYTFADKPAKTTREALP 300
Query 301 CGDYGLKVAGQLVAAVERKALADLTSGVLNGNLKYQLTELAALPRAAVVVEDRYSEIFAH 360
CGDYGLKVAGQLVAAVERKALADLTSGVLNGNLKYQLTELAALPRAAVVVEDRYSEIFAH
Sbjct 301 CGDYGLKVAGQLVAAVERKALADLTSGVLNGNLKYQLTELAALPRAAVVVEDRYSEIFAH 360
Query 361 SFARPTAIADGLAELQIGFPNVPIVFCQTRKLAQEYTYRYLAAALTWFVDDADATTVFEP 420
SFARPTAIADGLAELQIGFPNVPIVFCQTRKLAQEYTYRYLAAALTWFVDDADATTVFEP
Sbjct 361 SFARPTAIADGLAELQIGFPNVPIVFCQTRKLAQEYTYRYLAAALTWFVDDADATTVFEP 420
Query 421 AAAEPEPSSAELRAWAKSVGLPVSDRGRLRPQILQAWRAAHPR 463
AAAEPEPSSAELRAWAKSVGLPVSDRGRLRPQILQAWRAAHPR
Sbjct 421 AAAEPEPSSAELRAWAKSVGLPVSDRGRLRPQILQAWRAAHPR 463
>gi|289575233|ref|ZP_06455460.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
gi|339632555|ref|YP_004724197.1| hypothetical protein MAF_25440 [Mycobacterium africanum GM041182]
gi|289539664|gb|EFD44242.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
gi|339331911|emb|CCC27614.1| hypothetical protein MAF_25440 [Mycobacterium africanum GM041182]
Length=462
Score = 922 bits (2383), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/463 (99%), Positives = 462/463 (99%), Gaps = 1/463 (0%)
Query 1 VHLAHRVASSRDTPSSSATPNAVSGSASNAADRPCLVRPPTAPPWAHGPRLRRDPTGGGS 60
+HLAHRVASSRDTPSSSATPNAVSGSASNAADRPCLVRPPTAPPWAHGPRLRRDPTGGGS
Sbjct 1 MHLAHRVASSRDTPSSSATPNAVSGSASNAADRPCLVRPPTAPPWAHGPRLRRDPTGGGS 60
Query 61 TPSIVLSRSTDRSKDGHRIVPAGARKSGVRASTGRLPSTRKTTRSPDCRPSASRTAFGTV 120
TPSIVLSRSTDRSKDGHRIVPAGARKSGVRASTGRLPSTRKTTRSPDCRPSASRTAFGTV
Sbjct 61 TPSIVLSRSTDRSKDGHRIVPAGARKSGVRASTGRLPSTRKTTRSPDCRPSASRTAFGTV 120
Query 121 TCPFDVTMGSSECLLHRCRTPPVPSHSVELLVAANPAEDSRLPYLIRLPVGAGLVFATSD 180
TCPFDVTMGSSECLLHRCRTPPVPSHSVELLVAANPAEDSRLPYLIRLPVGAGLVFATSD
Sbjct 121 TCPFDVTMGSSECLLHRCRTPPVPSHSVELLVAANPAEDSRLPYLIRLPVGAGLVFATSD 180
Query 181 VWPRTKALYCHRLDIADWPADPVVVDRVELRSCSRRGAAIDVVAARARENRSQLVHTMAR 240
VWPRTKALYCHRLDIADWPADPVV DRVELRSCSRRGAAIDVVAARARENRSQLVHTMAR
Sbjct 181 VWPRTKALYCHRLDIADWPADPVV-DRVELRSCSRRGAAIDVVAARARENRSQLVHTMAR 239
Query 241 GRQVVFWQSPKTRKQSRPGVRTPTARAAGIPELHIVVDAHERYPYTFADKPAKTTREALP 300
GRQVVFWQSPKTRKQSRPGVRTPTARAAGIPELHIVVDAHERYPYTFADKPAKTTREALP
Sbjct 240 GRQVVFWQSPKTRKQSRPGVRTPTARAAGIPELHIVVDAHERYPYTFADKPAKTTREALP 299
Query 301 CGDYGLKVAGQLVAAVERKALADLTSGVLNGNLKYQLTELAALPRAAVVVEDRYSEIFAH 360
CGDYGLKVAGQLVAAVERKALADLTSGVLNGNLKYQLTELAALPRAAVVVEDRYSEIFAH
Sbjct 300 CGDYGLKVAGQLVAAVERKALADLTSGVLNGNLKYQLTELAALPRAAVVVEDRYSEIFAH 359
Query 361 SFARPTAIADGLAELQIGFPNVPIVFCQTRKLAQEYTYRYLAAALTWFVDDADATTVFEP 420
SFARPTAIADGLAELQIGFPNVPIVFCQTRKLAQEYTYRYLAAALTWFVDDADATTVFEP
Sbjct 360 SFARPTAIADGLAELQIGFPNVPIVFCQTRKLAQEYTYRYLAAALTWFVDDADATTVFEP 419
Query 421 AAAEPEPSSAELRAWAKSVGLPVSDRGRLRPQILQAWRAAHPR 463
AAAEPEPSSAELRAWAKSVGLPVSDRGRLRPQILQAWRAAHPR
Sbjct 420 AAAEPEPSSAELRAWAKSVGLPVSDRGRLRPQILQAWRAAHPR 462
>gi|340627544|ref|YP_004745996.1| hypothetical protein MCAN_25691 [Mycobacterium canettii CIPT
140010059]
gi|340005734|emb|CCC44900.1| hypothetical protein MCAN_25691 [Mycobacterium canettii CIPT
140010059]
Length=463
Score = 921 bits (2380), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/463 (99%), Positives = 460/463 (99%), Gaps = 0/463 (0%)
Query 1 VHLAHRVASSRDTPSSSATPNAVSGSASNAADRPCLVRPPTAPPWAHGPRLRRDPTGGGS 60
+HLAHRVASSRDTPSSSATPNAVSGSASNAADRPCLVRPPTAPPWAHGPRLRRDPTGGGS
Sbjct 1 MHLAHRVASSRDTPSSSATPNAVSGSASNAADRPCLVRPPTAPPWAHGPRLRRDPTGGGS 60
Query 61 TPSIVLSRSTDRSKDGHRIVPAGARKSGVRASTGRLPSTRKTTRSPDCRPSASRTAFGTV 120
TPSIVLSRSTDRSKDGHRIVPAGARKSGVRAST RLPSTRKTTRSPD RPSASRTAFGTV
Sbjct 61 TPSIVLSRSTDRSKDGHRIVPAGARKSGVRASTARLPSTRKTTRSPDFRPSASRTAFGTV 120
Query 121 TCPFDVTMGSSECLLHRCRTPPVPSHSVELLVAANPAEDSRLPYLIRLPVGAGLVFATSD 180
TCPFDVTMGSSECLLHRCRTPPVPSHSVELLVAANPAEDSRLPYLIRLPVGAGLVFATSD
Sbjct 121 TCPFDVTMGSSECLLHRCRTPPVPSHSVELLVAANPAEDSRLPYLIRLPVGAGLVFATSD 180
Query 181 VWPRTKALYCHRLDIADWPADPVVVDRVELRSCSRRGAAIDVVAARARENRSQLVHTMAR 240
VWPRTKALYCHRLDIADWPADPVVVDRVELRSCSRRGAAIDVVAARARENRSQLVHTMAR
Sbjct 181 VWPRTKALYCHRLDIADWPADPVVVDRVELRSCSRRGAAIDVVAARARENRSQLVHTMAR 240
Query 241 GRQVVFWQSPKTRKQSRPGVRTPTARAAGIPELHIVVDAHERYPYTFADKPAKTTREALP 300
GRQVVFWQSPKTRKQSRPGVRTPTARAAGIPELHIVVDAHERYPYTFADKPAKTTREALP
Sbjct 241 GRQVVFWQSPKTRKQSRPGVRTPTARAAGIPELHIVVDAHERYPYTFADKPAKTTREALP 300
Query 301 CGDYGLKVAGQLVAAVERKALADLTSGVLNGNLKYQLTELAALPRAAVVVEDRYSEIFAH 360
CGDYGLKVAGQLVAAVERKALADLTSGVLNGNLKYQLTELAALPRAAVVVEDRYSEIFAH
Sbjct 301 CGDYGLKVAGQLVAAVERKALADLTSGVLNGNLKYQLTELAALPRAAVVVEDRYSEIFAH 360
Query 361 SFARPTAIADGLAELQIGFPNVPIVFCQTRKLAQEYTYRYLAAALTWFVDDADATTVFEP 420
SFARP AIADGLAELQIGFPNVPIVFCQTRKLAQEYTYRYLAAALTWFVDDADATTVFEP
Sbjct 361 SFARPAAIADGLAELQIGFPNVPIVFCQTRKLAQEYTYRYLAAALTWFVDDADATTVFEP 420
Query 421 AAAEPEPSSAELRAWAKSVGLPVSDRGRLRPQILQAWRAAHPR 463
AAAEPEPSSAELRAWAKSVGLPVSDRGRLRPQILQAWRAAHPR
Sbjct 421 AAAEPEPSSAELRAWAKSVGLPVSDRGRLRPQILQAWRAAHPR 463
>gi|253798392|ref|YP_003031393.1| hypothetical protein TBMG_01444 [Mycobacterium tuberculosis KZN
1435]
gi|253319895|gb|ACT24498.1| hypothetical protein TBMG_01444 [Mycobacterium tuberculosis KZN
1435]
Length=336
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/336 (100%), Positives = 336/336 (100%), Gaps = 0/336 (0%)
Query 128 MGSSECLLHRCRTPPVPSHSVELLVAANPAEDSRLPYLIRLPVGAGLVFATSDVWPRTKA 187
MGSSECLLHRCRTPPVPSHSVELLVAANPAEDSRLPYLIRLPVGAGLVFATSDVWPRTKA
Sbjct 1 MGSSECLLHRCRTPPVPSHSVELLVAANPAEDSRLPYLIRLPVGAGLVFATSDVWPRTKA 60
Query 188 LYCHRLDIADWPADPVVVDRVELRSCSRRGAAIDVVAARARENRSQLVHTMARGRQVVFW 247
LYCHRLDIADWPADPVVVDRVELRSCSRRGAAIDVVAARARENRSQLVHTMARGRQVVFW
Sbjct 61 LYCHRLDIADWPADPVVVDRVELRSCSRRGAAIDVVAARARENRSQLVHTMARGRQVVFW 120
Query 248 QSPKTRKQSRPGVRTPTARAAGIPELHIVVDAHERYPYTFADKPAKTTREALPCGDYGLK 307
QSPKTRKQSRPGVRTPTARAAGIPELHIVVDAHERYPYTFADKPAKTTREALPCGDYGLK
Sbjct 121 QSPKTRKQSRPGVRTPTARAAGIPELHIVVDAHERYPYTFADKPAKTTREALPCGDYGLK 180
Query 308 VAGQLVAAVERKALADLTSGVLNGNLKYQLTELAALPRAAVVVEDRYSEIFAHSFARPTA 367
VAGQLVAAVERKALADLTSGVLNGNLKYQLTELAALPRAAVVVEDRYSEIFAHSFARPTA
Sbjct 181 VAGQLVAAVERKALADLTSGVLNGNLKYQLTELAALPRAAVVVEDRYSEIFAHSFARPTA 240
Query 368 IADGLAELQIGFPNVPIVFCQTRKLAQEYTYRYLAAALTWFVDDADATTVFEPAAAEPEP 427
IADGLAELQIGFPNVPIVFCQTRKLAQEYTYRYLAAALTWFVDDADATTVFEPAAAEPEP
Sbjct 241 IADGLAELQIGFPNVPIVFCQTRKLAQEYTYRYLAAALTWFVDDADATTVFEPAAAEPEP 300
Query 428 SSAELRAWAKSVGLPVSDRGRLRPQILQAWRAAHPR 463
SSAELRAWAKSVGLPVSDRGRLRPQILQAWRAAHPR
Sbjct 301 SSAELRAWAKSVGLPVSDRGRLRPQILQAWRAAHPR 336
>gi|308232165|ref|ZP_07415139.2| hypothetical protein TMAG_02332 [Mycobacterium tuberculosis SUMu001]
gi|308371047|ref|ZP_07667078.1| hypothetical protein TMCG_01773 [Mycobacterium tuberculosis SUMu003]
gi|308372329|ref|ZP_07667355.1| hypothetical protein TMDG_00241 [Mycobacterium tuberculosis SUMu004]
12 more sequence titles
Length=316
Score = 637 bits (1644), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/316 (99%), Positives = 316/316 (100%), Gaps = 0/316 (0%)
Query 148 VELLVAANPAEDSRLPYLIRLPVGAGLVFATSDVWPRTKALYCHRLDIADWPADPVVVDR 207
+ELLVAANPAEDSRLPYLIRLPVGAGLVFATSDVWPRTKALYCHRLDIADWPADPVVVDR
Sbjct 1 MELLVAANPAEDSRLPYLIRLPVGAGLVFATSDVWPRTKALYCHRLDIADWPADPVVVDR 60
Query 208 VELRSCSRRGAAIDVVAARARENRSQLVHTMARGRQVVFWQSPKTRKQSRPGVRTPTARA 267
VELRSCSRRGAAIDVVAARARENRSQLVHTMARGRQVVFWQSPKTRKQSRPGVRTPTARA
Sbjct 61 VELRSCSRRGAAIDVVAARARENRSQLVHTMARGRQVVFWQSPKTRKQSRPGVRTPTARA 120
Query 268 AGIPELHIVVDAHERYPYTFADKPAKTTREALPCGDYGLKVAGQLVAAVERKALADLTSG 327
AGIPELHIVVDAHERYPYTFADKPAKTTREALPCGDYGLKVAGQLVAAVERKALADLTSG
Sbjct 121 AGIPELHIVVDAHERYPYTFADKPAKTTREALPCGDYGLKVAGQLVAAVERKALADLTSG 180
Query 328 VLNGNLKYQLTELAALPRAAVVVEDRYSEIFAHSFARPTAIADGLAELQIGFPNVPIVFC 387
VLNGNLKYQLTELAALPRAAVVVEDRYSEIFAHSFARPTAIADGLAELQIGFPNVPIVFC
Sbjct 181 VLNGNLKYQLTELAALPRAAVVVEDRYSEIFAHSFARPTAIADGLAELQIGFPNVPIVFC 240
Query 388 QTRKLAQEYTYRYLAAALTWFVDDADATTVFEPAAAEPEPSSAELRAWAKSVGLPVSDRG 447
QTRKLAQEYTYRYLAAALTWFVDDADATTVFEPAAAEPEPSSAELRAWAKSVGLPVSDRG
Sbjct 241 QTRKLAQEYTYRYLAAALTWFVDDADATTVFEPAAAEPEPSSAELRAWAKSVGLPVSDRG 300
Query 448 RLRPQILQAWRAAHPR 463
RLRPQILQAWRAAHPR
Sbjct 301 RLRPQILQAWRAAHPR 316
>gi|289448176|ref|ZP_06437920.1| ERCC4 domain-containing protein [Mycobacterium tuberculosis CPHL_A]
gi|289421134|gb|EFD18335.1| ERCC4 domain-containing protein [Mycobacterium tuberculosis CPHL_A]
Length=341
Score = 604 bits (1558), Expect = 9e-171, Method: Compositional matrix adjust.
Identities = 299/300 (99%), Positives = 300/300 (100%), Gaps = 0/300 (0%)
Query 148 VELLVAANPAEDSRLPYLIRLPVGAGLVFATSDVWPRTKALYCHRLDIADWPADPVVVDR 207
+ELLVAANPAEDSRLPYLIRLPVGAGLVFATSDVWPRTKALYCHRLDIADWPADPVVVDR
Sbjct 1 MELLVAANPAEDSRLPYLIRLPVGAGLVFATSDVWPRTKALYCHRLDIADWPADPVVVDR 60
Query 208 VELRSCSRRGAAIDVVAARARENRSQLVHTMARGRQVVFWQSPKTRKQSRPGVRTPTARA 267
VELRSCSRRGAAIDVVAARARENRSQLVHTMARGRQVVFWQSPKTRKQSRPGVRTPTARA
Sbjct 61 VELRSCSRRGAAIDVVAARARENRSQLVHTMARGRQVVFWQSPKTRKQSRPGVRTPTARA 120
Query 268 AGIPELHIVVDAHERYPYTFADKPAKTTREALPCGDYGLKVAGQLVAAVERKALADLTSG 327
AGIPELHIVVDAHERYPYTFADKPAKTTREALPCGDYGLKVAGQLVAAVERKALADLTSG
Sbjct 121 AGIPELHIVVDAHERYPYTFADKPAKTTREALPCGDYGLKVAGQLVAAVERKALADLTSG 180
Query 328 VLNGNLKYQLTELAALPRAAVVVEDRYSEIFAHSFARPTAIADGLAELQIGFPNVPIVFC 387
VLNGNLKYQLTELAALPRAAVVVEDRYSEIFAHSFARPTAIADGLAELQIGFPNVPIVFC
Sbjct 181 VLNGNLKYQLTELAALPRAAVVVEDRYSEIFAHSFARPTAIADGLAELQIGFPNVPIVFC 240
Query 388 QTRKLAQEYTYRYLAAALTWFVDDADATTVFEPAAAEPEPSSAELRAWAKSVGLPVSDRG 447
QTRKLAQEYTYRYLAAALTWFVDDADATTVFEPAAAEPEPSSAELRAWAKSVGLPVSDRG
Sbjct 241 QTRKLAQEYTYRYLAAALTWFVDDADATTVFEPAAAEPEPSSAELRAWAKSVGLPVSDRG 300
>gi|289751145|ref|ZP_06510523.1| hypothetical protein TBDG_03985 [Mycobacterium tuberculosis T92]
gi|289691732|gb|EFD59161.1| hypothetical protein TBDG_03985 [Mycobacterium tuberculosis T92]
Length=220
Score = 446 bits (1147), Expect = 4e-123, Method: Compositional matrix adjust.
Identities = 219/220 (99%), Positives = 220/220 (100%), Gaps = 0/220 (0%)
Query 244 VVFWQSPKTRKQSRPGVRTPTARAAGIPELHIVVDAHERYPYTFADKPAKTTREALPCGD 303
+VFWQSPKTRKQSRPGVRTPTARAAGIPELHIVVDAHERYPYTFADKPAKTTREALPCGD
Sbjct 1 MVFWQSPKTRKQSRPGVRTPTARAAGIPELHIVVDAHERYPYTFADKPAKTTREALPCGD 60
Query 304 YGLKVAGQLVAAVERKALADLTSGVLNGNLKYQLTELAALPRAAVVVEDRYSEIFAHSFA 363
YGLKVAGQLVAAVERKALADLTSGVLNGNLKYQLTELAALPRAAVVVEDRYSEIFAHSFA
Sbjct 61 YGLKVAGQLVAAVERKALADLTSGVLNGNLKYQLTELAALPRAAVVVEDRYSEIFAHSFA 120
Query 364 RPTAIADGLAELQIGFPNVPIVFCQTRKLAQEYTYRYLAAALTWFVDDADATTVFEPAAA 423
RPTAIADGLAELQIGFPNVPIVFCQTRKLAQEYTYRYLAAALTWFVDDADATTVFEPAAA
Sbjct 121 RPTAIADGLAELQIGFPNVPIVFCQTRKLAQEYTYRYLAAALTWFVDDADATTVFEPAAA 180
Query 424 EPEPSSAELRAWAKSVGLPVSDRGRLRPQILQAWRAAHPR 463
EPEPSSAELRAWAKSVGLPVSDRGRLRPQILQAWRAAHPR
Sbjct 181 EPEPSSAELRAWAKSVGLPVSDRGRLRPQILQAWRAAHPR 220
>gi|296165980|ref|ZP_06848435.1| ERCC4 domain protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295898664|gb|EFG78215.1| ERCC4 domain protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=332
Score = 401 bits (1031), Expect = 1e-109, Method: Compositional matrix adjust.
Identities = 200/325 (62%), Positives = 248/325 (77%), Gaps = 14/325 (4%)
Query 149 ELLVAANPAEDSRLPYLIRLPVGAG-LVFATSDVWPRTKALYCHRLDIADWPADPVVVDR 207
+LLVA NP EDSRLP+L+R+P +G L+F TS WPR KALYC+ + + +WP D V+V+R
Sbjct 3 QLLVAVNPDEDSRLPFLLRIPQPSGDLLFRTSGTWPRVKALYCYPVGLHEWPDDAVIVER 62
Query 208 VELRSCSRRGAAIDVVAARARENRSQLVHTMARGRQVVFWQSPKTRKQSRPGVRTPTARA 267
V LRSC RRGAAID++ R+RENRSQLV T ARGR VFWQSP+TRKQ+RP VRTPTARA
Sbjct 63 VRLRSCQRRGAAIDLIVDRSRENRSQLVFTQARGRDAVFWQSPRTRKQARPNVRTPTARA 122
Query 268 AGIPELHIVVDAHERYPYTFADKPAKTTREALPCGDYGLKVAGQLVAAVERKALADLTSG 327
GI L IVVD+HERY Y F + T R+ALPCGDYGL + GQLVA+VERK+LADL +
Sbjct 123 QGIVGLQIVVDSHERYAYRFPTQQVGTIRQALPCGDYGLVIDGQLVASVERKSLADLVAS 182
Query 328 VLNGNLKYQLTELAALPRAAVVVEDRYSEIFAHSFARPTAIADGLAELQIGFPNVPIVFC 387
+ G L+YQ+ +LAALPRAA+VVEDRYS++F RP +ADGLAELQI +PNVP+VFC
Sbjct 183 LTGGKLRYQVADLAALPRAALVVEDRYSQLFTLDRVRPAVVADGLAELQIRWPNVPMVFC 242
Query 388 QTRKLAQEYTYRYLAAALTWFVDD-----------ADATTVFEPAAAEPEPSSAELRAWA 436
+TR+LAQE+TYR+LAAA W + + D T + +PA + EPS+AE+RAWA
Sbjct 243 ETRQLAQEWTYRFLAAAHDWALTEHAALQRISSAAIDITELDQPAVS--EPSTAEVRAWA 300
Query 437 KSVGLPVSDRGRLRPQILQAWRAAH 461
+S GLPV DRGRLRP+I QAWR A+
Sbjct 301 RSTGLPVPDRGRLRPEIWQAWRHAN 325
>gi|145225765|ref|YP_001136443.1| ERCC4 domain-containing protein [Mycobacterium gilvum PYR-GCK]
gi|145218251|gb|ABP47655.1| ERCC4 domain protein [Mycobacterium gilvum PYR-GCK]
Length=325
Score = 393 bits (1009), Expect = 4e-107, Method: Compositional matrix adjust.
Identities = 196/323 (61%), Positives = 243/323 (76%), Gaps = 8/323 (2%)
Query 148 VELLVAANPAEDSRLPYLIRLPV-GAGLVFATSDVWPRTKALYCHRLDIADWPADPVVVD 206
VELL+A NP + SRL YL+RLP G L+F TSD WPR KALYCH + + +WP DP +V+
Sbjct 2 VELLIARNPDDGSRLHYLMRLPQPGGDLLFRTSDTWPRVKALYCHPVGLDEWPDDPEIVE 61
Query 207 RVELRSCSRRGAAIDVVAARARENRSQLVHTMARGRQVVFWQSPKTRKQSRPGVRTPTAR 266
R+ LRSC RRGA+IDV+A R RENRSQ+V T ARGR VFWQSP+TRKQ+RP VRTPTAR
Sbjct 62 RIPLRSCQRRGASIDVIAQRGRENRSQVVFTTARGRDAVFWQSPRTRKQARPNVRTPTAR 121
Query 267 AAGIPELHIVVDAHERYPYTFADKPAKTTREALPCGDYGLKVAGQLVAAVERKALADLTS 326
A G+ +LHI+VD HERY Y FA + + T + LPCGDYGL+V G LVA+VERK+LADL +
Sbjct 122 AQGLEQLHILVDTHERYAYRFATQQSITVPKPLPCGDYGLEVDGALVASVERKSLADLVT 181
Query 327 GVLNGNLKYQLTELAALPRAAVVVEDRYSEIFAHSFARPTAIADGLAELQIGFPNVPIVF 386
+ G L+YQ+ +LAALPRAA+VVEDRYS++F RP +ADGLAELQ+ + +VPIVF
Sbjct 182 SLTTGRLRYQVADLAALPRAAIVVEDRYSQLFKLDRVRPAVVADGLAELQVRWHSVPIVF 241
Query 387 CQTRKLAQEYTYRYLAAALTWFVDDADATTVFEPA-------AAEPEPSSAELRAWAKSV 439
C+TR LA+E+TYR+LAAA W V +A A P A PS+A++RAWA+S
Sbjct 242 CETRPLAEEWTYRFLAAAHAWAVTEAAALQRISPVRIDVAVQAPTNGPSTADVRAWARSA 301
Query 440 GLPVSDRGRLRPQILQAWRAAHP 462
GLPV DRGRLRP++ QAWR AHP
Sbjct 302 GLPVPDRGRLRPEVWQAWRDAHP 324
>gi|315446122|ref|YP_004079001.1| ERCC4 domain-containing protein [Mycobacterium sp. Spyr1]
gi|315264425|gb|ADU01167.1| ERCC4 domain-containing protein [Mycobacterium sp. Spyr1]
Length=325
Score = 392 bits (1008), Expect = 6e-107, Method: Compositional matrix adjust.
Identities = 195/323 (61%), Positives = 242/323 (75%), Gaps = 8/323 (2%)
Query 148 VELLVAANPAEDSRLPYLIRLPV-GAGLVFATSDVWPRTKALYCHRLDIADWPADPVVVD 206
VELL+ NP + SRL YL+RLP G L+F TSD WPR KALYCH + + +WP DP +V+
Sbjct 2 VELLIVRNPDDGSRLQYLMRLPQPGGDLLFRTSDTWPRVKALYCHPVGLDEWPDDPEIVE 61
Query 207 RVELRSCSRRGAAIDVVAARARENRSQLVHTMARGRQVVFWQSPKTRKQSRPGVRTPTAR 266
R+ LRSC RRGA+IDV+A R RENRSQ+V T ARGR VFWQSP+TRKQ+RP VRTPTAR
Sbjct 62 RIPLRSCQRRGASIDVIAQRGRENRSQVVFTTARGRDAVFWQSPRTRKQARPNVRTPTAR 121
Query 267 AAGIPELHIVVDAHERYPYTFADKPAKTTREALPCGDYGLKVAGQLVAAVERKALADLTS 326
A G+ +LHI+VD HERY Y FA + + T + LPCGDYGL+V G LVA+VERK+LADL +
Sbjct 122 AQGLEQLHILVDTHERYAYRFATQQSITVPKPLPCGDYGLEVDGALVASVERKSLADLVT 181
Query 327 GVLNGNLKYQLTELAALPRAAVVVEDRYSEIFAHSFARPTAIADGLAELQIGFPNVPIVF 386
+ G L+YQ+ +LAALPRAA+VVEDRYS++F RP +ADGLAELQ+ + +VPIVF
Sbjct 182 SLTTGRLRYQVADLAALPRAAIVVEDRYSQLFKLDRVRPAVVADGLAELQVRWHSVPIVF 241
Query 387 CQTRKLAQEYTYRYLAAALTWFVDDADATTVFEPA-------AAEPEPSSAELRAWAKSV 439
C+TR LA+E+TYR+LAAA W V +A A P A PS+A++RAWA+S
Sbjct 242 CETRPLAEEWTYRFLAAAHAWAVTEAAALQRISPVRIDVAVQAPTNGPSTADVRAWARSA 301
Query 440 GLPVSDRGRLRPQILQAWRAAHP 462
GLPV DRGRLRP++ QAWR AHP
Sbjct 302 GLPVPDRGRLRPEVWQAWRDAHP 324
>gi|209418092|ref|YP_002274121.1| ERCC4 domain protein [Mycobacterium liflandii 128FXT]
gi|169409224|gb|ACA57630.1| ERCC4 domain protein [Mycobacterium liflandii 128FXT]
Length=331
Score = 391 bits (1005), Expect = 1e-106, Method: Compositional matrix adjust.
Identities = 194/328 (60%), Positives = 247/328 (76%), Gaps = 19/328 (5%)
Query 149 ELLVAANPAEDSRLPYLIRLPVGAG-LVFATSDVWPRTKALYCHRLDIADWPADPVVVDR 207
+LL+AANP EDSRLP+L+R+P G L+F TS WPR KALYC+ + + +WP D V+++R
Sbjct 3 DLLIAANPDEDSRLPFLLRIPRPDGDLLFRTSGTWPRVKALYCYPVGLHEWPKDAVIIER 62
Query 208 VELRSCSRRGAAIDVVAARARENRSQLVHTMARGRQVVFWQSPKTRKQSRPGVRTPTARA 267
V LRSC RRGAAID++ R+RENRSQLV+T ARGR VFWQS +TRKQ+RP VRTPTARA
Sbjct 63 VGLRSCRRRGAAIDLILDRSRENRSQLVYTQARGRDAVFWQSARTRKQARPNVRTPTARA 122
Query 268 AGIPELHIVVDAHERYPYTFADKPAKTTREALPCGDYGLKVAGQLVAAVERKALADLTSG 327
GI EL IV+D+HERY Y F+ + T R+ALPCGDYGL V QL+A+VERK+LADL +
Sbjct 123 QGIAELQIVIDSHERYAYRFSGQQVSTVRQALPCGDYGLIVDSQLIASVERKSLADLVAS 182
Query 328 VLNGNLKYQLTELAALPRAAVVVEDRYSEIFAHSFARPTAIADGLAELQIGFPNVPIVFC 387
+ +G L+YQ+ +L+ALPRAAVVV+DRYS++F RP +ADGLAELQI +PNVP+VFC
Sbjct 183 LTSGKLRYQIADLSALPRAAVVVDDRYSQVFTLDRLRPAVVADGLAELQIRWPNVPMVFC 242
Query 388 QTRKLAQEYTYRYLAAALTWF--------------VDDADATTVFEPAAAEPEPSSAELR 433
+TR+LA+E+TYR+LAAA W +D AD + A A PEPS+A +R
Sbjct 243 ETRQLAEEWTYRFLAAAHDWALTEHPALQRISSIKIDIAD----LDQAPATPEPSTAVVR 298
Query 434 AWAKSVGLPVSDRGRLRPQILQAWRAAH 461
AWA++ GL V DRGRLRP+I QAWR A+
Sbjct 299 AWARTCGLAVPDRGRLRPEIWQAWRDAN 326
>gi|169245912|gb|ACA50933.1| ERCC4 domain protein [Mycobacterium marinum DL240490]
Length=321
Score = 380 bits (977), Expect = 2e-103, Method: Compositional matrix adjust.
Identities = 190/323 (59%), Positives = 242/323 (75%), Gaps = 19/323 (5%)
Query 149 ELLVAANPAEDSRLPYLIRLPVGAG-LVFATSDVWPRTKALYCHRLDIADWPADPVVVDR 207
+LL+AANP EDSRLP+L+R+P G L+F TS WPR KALYC+ + + +WP D V+++R
Sbjct 3 DLLIAANPDEDSRLPFLLRIPRPDGDLLFRTSGTWPRVKALYCYPVGLHEWPKDAVIIER 62
Query 208 VELRSCSRRGAAIDVVAARARENRSQLVHTMARGRQVVFWQSPKTRKQSRPGVRTPTARA 267
V LRSC RRGAAID++ R+RENRSQLV+T ARGR VFWQS +TRKQ+RP VRTPTARA
Sbjct 63 VGLRSCRRRGAAIDLILDRSRENRSQLVYTQARGRDAVFWQSARTRKQARPNVRTPTARA 122
Query 268 AGIPELHIVVDAHERYPYTFADKPAKTTREALPCGDYGLKVAGQLVAAVERKALADLTSG 327
GI EL IV+D+HERY Y F+ + T R+ALPCGDYGL V QL+A+VERK+LA L +
Sbjct 123 QGIAELQIVIDSHERYAYRFSGQQVSTVRQALPCGDYGLIVDSQLIASVERKSLAALVAS 182
Query 328 VLNGNLKYQLTELAALPRAAVVVEDRYSEIFAHSFARPTAIADGLAELQIGFPNVPIVFC 387
+ +G L+YQ+ +L+ALPRAAVVV+DRYS++F RP +ADGLAELQI +PNVP+VFC
Sbjct 183 LTSGKLRYQIADLSALPRAAVVVDDRYSQVFTLDRLRPAVVADGLAELQIRWPNVPMVFC 242
Query 388 QTRKLAQEYTYRYLAAALTWF--------------VDDADATTVFEPAAAEPEPSSAELR 433
+TR+LA+E+TYR+LAAA W +D AD + A A PEPS+A +R
Sbjct 243 ETRQLAEEWTYRFLAAAHDWALTEHPALQRISSIKIDIAD----LDQAPATPEPSTAVVR 298
Query 434 AWAKSVGLPVSDRGRLRPQILQA 456
AWA++ GL V DRGRLRP+I QA
Sbjct 299 AWARTCGLAVPDRGRLRPEIWQA 321
>gi|158317115|ref|YP_001509623.1| cyclic nucleotide-binding protein [Frankia sp. EAN1pec]
gi|158112520|gb|ABW14717.1| cyclic nucleotide-binding protein [Frankia sp. EAN1pec]
Length=321
Score = 371 bits (952), Expect = 2e-100, Method: Compositional matrix adjust.
Identities = 197/321 (62%), Positives = 241/321 (76%), Gaps = 7/321 (2%)
Query 148 VELLVAANPAEDSRLPYLIRLPVGAGLVFATSDVWPRTKALYCHRLDIADWPADPVVVDR 207
+ELL+A NP DSRLPYL+RLP+ GLVF+ + WPRT ALYCH L ADWP +V+R
Sbjct 1 MELLIAHNPDPDSRLPYLLRLPLADGLVFSAAGTWPRTTALYCHPLSGADWPEAAELVER 60
Query 208 VELRSCSRRGAAIDVVAARARENRSQLVHTMARGRQVVFWQSPKTRKQSRPGVRTPTARA 267
V LRSC RRGAAID++A R+RENRSQLV T ARGR VFWQSP+TR+Q+RP VRTPTARA
Sbjct 61 VPLRSCVRRGAAIDLIADRSRENRSQLVFTTARGRDAVFWQSPRTRRQARPKVRTPTARA 120
Query 268 AGIPELHIVVDAHERYPYTFADKPAKTTREALPCGDYGLKVAGQLVAAVERKALADLTSG 327
G+ EL IVVD+HE+YPY FA + +T R ALP GDYGL + G+L AAVERK+L+DL +
Sbjct 121 GGVTELEIVVDSHEKYPYRFATQQVRTVRRALPAGDYGLIIDGRLAAAVERKSLSDLVTS 180
Query 328 VLNGNLKYQLTELAALPRAAVVVEDRYSEIFAHSFARPTAIADGLAELQIGFPNVPIVFC 387
+ G L+Y L +LAALPRAAVVVEDRYS++FA RP +ADGLAELQ+ +P VPIVFC
Sbjct 181 LTTGRLRYALADLAALPRAAVVVEDRYSQLFALDRVRPALVADGLAELQVRWPGVPIVFC 240
Query 388 QTRKLAQEYTYRYLAAALTWFVDDADATTVFEP-------AAAEPEPSSAELRAWAKSVG 440
+TR LA+E+TYRYLAA W + A T P A A PEP++A++RAWA++ G
Sbjct 241 ETRSLAEEWTYRYLAATHLWAAAEQAALTRIGPLGGDLDHAPAAPEPTTAQVRAWARAHG 300
Query 441 LPVSDRGRLRPQILQAWRAAH 461
+ V DRGRLRP + AWRAAH
Sbjct 301 ITVPDRGRLRPDVWDAWRAAH 321
>gi|119718028|ref|YP_924993.1| ERCC4 domain-containing protein [Nocardioides sp. JS614]
gi|119538689|gb|ABL83306.1| ERCC4 domain protein [Nocardioides sp. JS614]
Length=330
Score = 315 bits (808), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 169/308 (55%), Positives = 209/308 (68%), Gaps = 9/308 (2%)
Query 149 ELLVAANPAEDSRLPYLIRLPVGA-GLVFATSDVWPRTKALYCHRLDIADWPADPVVVDR 207
+ +VA NP DS LPYL+R+P G G++ + WPRT +YCHR + +WPAD VV+R
Sbjct 10 DFVVARNPEADSSLPYLLRIPYGERGILLKAREAWPRTSKVYCHRFE--EWPADVEVVER 67
Query 208 VELRSCSRRGAAIDVVAARARENRSQLVHTMARG-RQVVFWQSPKTRKQSRPGVRTPTAR 266
V +RSC RRGAAID+V RARENRSQ V + ARG RQ +FWQ+ +T KQ RP V+TP AR
Sbjct 68 VGVRSCVRRGAAIDLVLDRARENRSQFVMSFARGGRQAIFWQTARTAKQVRPRVQTPRAR 127
Query 267 AAGIPELHIVVDAHERYPYTFADKPAKTTREALPCGDYGLKVAGQLVAAVERKALADLTS 326
A+G+ +L IVVD ERY ++F+ + A T RE LP GDY + G+ V VERK L DL S
Sbjct 128 ASGLEDLEIVVDVSERYAWSFSAQQATTRRERLPAGDYAVLHQGRPVGVVERKGLGDLVS 187
Query 327 GVLNGNLKYQLTELAALPRAAVVVEDRYSEIFAHSFARPTAIADGLAELQIGFPNVPIVF 386
+ G LKYQL +LAA+P A+VVEDRYS F H R +ADGLAE Q+ FPNVPIVF
Sbjct 188 SLTTGKLKYQLADLAAVPHGALVVEDRYSRAFQHKIVRAAVVADGLAECQVAFPNVPIVF 247
Query 387 CQTRKLAQEYTYRYLAAALTWFVDDADATTVFEPAAAEP-----EPSSAELRAWAKSVGL 441
C+TRKLAQE+TYR+L AAL V D F A EP+SAE+RAWA + L
Sbjct 248 CETRKLAQEWTYRFLGAALAEAVQDQPGELYFGGLATGNVLPPREPTSAEIRAWAIAASL 307
Query 442 PVSDRGRL 449
VSDRGR+
Sbjct 308 EVSDRGRI 315
>gi|226362333|ref|YP_002780111.1| hypothetical protein ROP_29190 [Rhodococcus opacus B4]
gi|226240818|dbj|BAH51166.1| hypothetical protein [Rhodococcus opacus B4]
Length=324
Score = 303 bits (777), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 163/324 (51%), Positives = 216/324 (67%), Gaps = 16/324 (4%)
Query 149 ELLVAANPAEDSRLPYLIRLPVG-AGLVFATSDVWPRTKALYCHRLDIADWPADPVVVDR 207
+LL+A NP S LPYL+R+P+G G+V WPR +YCHR D +WPAD +++R
Sbjct 4 DLLIARNPEVGSTLPYLVRVPLGPGGIVVKARQPWPRESKVYCHRAD--EWPADAEILER 61
Query 208 VELRSCSRRGAAIDVVAARARENRSQLVHTMARGRQVVFWQSPKTRKQSRPGVRTPTARA 267
+++RSC+RRG AID+V RARENRSQLV T ARGR+++FWQSP+T KQ+RP V PTARA
Sbjct 62 LQVRSCTRRGPAIDLVLTRARENRSQLVMTRARGREMIFWQSPRTAKQARPAVTVPTARA 121
Query 268 AGIPELHIVVDAHERYPYTFADKPAKTTREALPCGDYGLKVAGQLVAAVERKALADLTSG 327
G L IVVD E+YPYTF + A T R L GDY ++V ++VA VERK L DL +
Sbjct 122 HG-RVLDIVVDTAEKYPYTFGKQQASTVRRRLSAGDYAVEVGDEIVAVVERKTLEDLAAS 180
Query 328 VLNGNLKYQLTELAALPRAAVVVEDRYSEIFAHSFARPTAIADGLAELQIGFPNVPIVFC 387
+L+G + Y EL+ALPRAAVVVEDRYS +F +A+ LAELQ FP +P+ FC
Sbjct 181 LLSGRMTYAAAELSALPRAAVVVEDRYSRLFKLEHVSGAKVAEALAELQARFPALPVTFC 240
Query 388 QTRKLAQEYTYRYLAAAL-TWFVDDADATTVFEP--AAAEP-------EPSSAELRAWAK 437
+TR+L QE+TYR+L A L W + A ATT E A A P P +RAWA+
Sbjct 241 ETRQLGQEWTYRWLGACLHEW--ESARATTDLETTFATAPPVVPADVDAPRPGVVRAWAR 298
Query 438 SVGLPVSDRGRLRPQILQAWRAAH 461
+ G+ VS++GR+ +++A+ AAH
Sbjct 299 AQGIEVSEKGRIPASVMRAFSAAH 322
>gi|317126638|ref|YP_004100750.1| ERCC4 domain protein [Intrasporangium calvum DSM 43043]
gi|315590726|gb|ADU50023.1| ERCC4 domain protein [Intrasporangium calvum DSM 43043]
Length=335
Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 171/330 (52%), Positives = 223/330 (68%), Gaps = 20/330 (6%)
Query 149 ELLVAANPAEDSRLPYLIRLPVGA-GLVFATSDVWPRTKALYCHRLDIADWPADPVVVDR 207
+ LVAANP E S LPYLIR+P+G G+V + WPRT +YCHR + WP D VV+R
Sbjct 6 DFLVAANPEEGSSLPYLIRIPLGPDGIVLKARETWPRTSKVYCHRAE--GWPVDAQVVER 63
Query 208 VELRSCSRRGAAIDVVAARARENRSQLVHTMARGRQVVFWQSPKTRKQSRPGVRTPTAR- 266
V R C+ RGAAID+V R RENRSQ V + A+GRQV+FWQ+P+T KQ+RP VR PTAR
Sbjct 64 VPTRVCASRGAAIDLVLDRGRENRSQFVLSRAKGRQVIFWQTPRTAKQARPNVRIPTARP 123
Query 267 ---------AAGIP--ELHIVVDAHERYPYTFADKPAKTTREALPCGDYGLKVAGQLVAA 315
+P EL I+VD+HERY + F + A T ++ L GDY +++ G++VAA
Sbjct 124 RPGESDAPGTGPVPPLELEILVDSHERYGWKFTRQQATTRKKPLAIGDYAVELDGRVVAA 183
Query 316 VERKALADLTSGVLNGNLKYQLTELAALPRAAVVVEDRYSEIFAHSFARPTAIADGLAEL 375
VERK+L DL+S +LNG L+Y L EL+ + AVVVEDRYS +FA RP +AD +AE
Sbjct 184 VERKSLQDLSSSLLNGKLRYALAELSGIRHGAVVVEDRYSRVFALEHVRPAVVADAIAES 243
Query 376 QIGFPNVPIVFCQTRKLAQEYTYRYLAAALTWFVDDADA---TTVFEPAAAEP--EPSSA 430
Q +P VPI+FC+TR LAQE+T+R+LAAAL + A E A P EP++A
Sbjct 244 QARYPTVPIIFCETRALAQEWTFRFLAAALHEARLEVGAWPHLDALEAAGPVPPREPTTA 303
Query 431 ELRAWAKSVGLPVSDRGRLRPQILQAWRAA 460
E+RAWA + GLPVSDRGRLRP+I +A+R +
Sbjct 304 EVRAWAAAAGLPVSDRGRLRPEIWEAYRGS 333
>gi|262202777|ref|YP_003273985.1| ERCC4 domain-containing protein [Gordonia bronchialis DSM 43247]
gi|262086124|gb|ACY22092.1| ERCC4 domain protein [Gordonia bronchialis DSM 43247]
Length=322
Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 151/320 (48%), Positives = 201/320 (63%), Gaps = 17/320 (5%)
Query 149 ELLVAANPAEDSRLPYLIRLPVGA-GLVFATSDVWPRTKALYCHRLDIADWPADPVVVDR 207
E L+A NP E + LPYL+RLP+G G+V + WPRT +YCHR +ADWP D +V+R
Sbjct 4 EFLIARNPEEGTTLPYLVRLPLGTDGIVLKVRETWPRTSKVYCHR--VADWPEDAEIVER 61
Query 208 VELRSCSRRGAAIDVVAARARENRSQLVHTMARGRQVVFWQSPKTRKQSRPGVRTPTARA 267
+ +RS +RGAAID+V R RENRSQ V T ARGR+++FWQS +T KQ+RP V TP ARA
Sbjct 62 LPVRSIRKRGAAIDLVLDRGRENRSQFVLTRARGREMIFWQSRRTAKQARPNVNTPKARA 121
Query 268 AGIPELHIVVDAHERYPYTFADKPAKTTREALPCGDYGLKVAGQLVAAVERKALADLTSG 327
G I VD ERY Y FA++ A T + ALP GDY + +L+A ERK++ DL
Sbjct 122 HG-QVFEIAVDTRERYGYRFAEQQATTVKRALPSGDYAVFDEDELIAVAERKSIEDLAGT 180
Query 328 VLNGNLKYQLTELAALPRAAVVVEDRYSEIFAHSFARPTAIADGLAELQIGFPNVPIVFC 387
+L+G L YQL EL+ PRAAVVV+ YS +F +++AD +AE Q FP+VPIVFC
Sbjct 181 LLSGKLTYQLAELSTAPRAAVVVDSGYSRLFKLEHTPASSVADAVAEAQARFPSVPIVFC 240
Query 388 QTRKLAQEYTYRYLAAALTW----------FVDDADATTVFEPAAAEPEPSSAELRAWAK 437
+TR LAQE+ YR+ A L F D + A P P+S ++R WA+
Sbjct 241 ETRALAQEWLYRWFGACLHEAALSGTSGHAFAQDNETVPA---PAKPPTPTSGQIREWAR 297
Query 438 SVGLPVSDRGRLRPQILQAW 457
+ G VSDRGR+ ++ A+
Sbjct 298 ANGFQVSDRGRIPREVQSAF 317
>gi|160902980|ref|YP_001568561.1| hypothetical protein Pmob_1537 [Petrotoga mobilis SJ95]
gi|160360624|gb|ABX32238.1| hypothetical protein Pmob_1537 [Petrotoga mobilis SJ95]
Length=354
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 81/272 (30%), Positives = 126/272 (47%), Gaps = 23/272 (8%)
Query 150 LLVAANPAEDSRLPY--LIRLPVGAGLVFATSDVWPRT-KALYCHRLDIADWPADPVVVD 206
L E R PY IR L D WP K ++C R D+ + ++ ++
Sbjct 4 FLWVLESTEKYRFPYRVTIRKEEKIILSLFVQDKWPGAGKHIFCMR-DMEEPSSNYQEIE 62
Query 207 RVELRSCSRRGAAIDVVAARARENRSQLVHTMARGR------QVVFWQSPKTRKQSRPGV 260
RV + S +R G + VV RA+ R + + + + +FW++ + K+ RP V
Sbjct 63 RVPIISLNRYGKRLSVVLDRAQNKRCDFLFLKKKYKNKEGEYEQIFWRTEQGLKEHRPKV 122
Query 261 RTPTARAAGIPELHIVVDAHERYPYTFADKPAKTTREALPCGDYGLKVAGQLVAAVERKA 320
+ A G LHI++D +ERYP+ FA+ R L GDY L ++A ERK
Sbjct 123 KLT---AKGDHHLHILIDINERYPWKFAN--CNVERAQLKAGDYALLSESGIIAVAERKT 177
Query 321 LADLTSGVLNGNL---KYQLTELAALPRAAVVVEDRYSEIFAHSFAR---PTAIADGLAE 374
+ + GNL +L ELA +A VVE YS+ + + P+ ++ LAE
Sbjct 178 FTNFIGDI--GNLPLLHMKLGELAKYKHSAFVVEANYSDFLNPTKLKAYTPSYLSKVLAE 235
Query 375 LQIGFPNVPIVFCQTRKLAQEYTYRYLAAALT 406
+ P I+F RKLA E+T R+ A ++
Sbjct 236 IFAYHPGFQIIFAGNRKLANEWTLRFFQAVMS 267
>gi|304318058|ref|YP_003853203.1| ERCC4 domain-containing protein [Thermoanaerobacterium thermosaccharolyticum
DSM 571]
gi|302779560|gb|ADL70119.1| ERCC4 domain protein [Thermoanaerobacterium thermosaccharolyticum
DSM 571]
Length=355
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/273 (28%), Positives = 131/273 (48%), Gaps = 23/273 (8%)
Query 149 ELLVAANPAEDSRLPYLIRLPVGAG----LVFATSDVWPRTKA-LYCHRLDIADWPADPV 203
+LL + + PY RL + G L + WP + ++C + D + D
Sbjct 3 DLLWILESTKSDKFPY--RLSIKKGDTTLLSLFVQNKWPGAGSQIFCLK-DTNEQSNDYE 59
Query 204 VVDRVELRSCSRRGAAIDVVAARARENRSQLVHTMARGR------QVVFWQSPKTRKQSR 257
V+++V + S R G + VV R R + + + + + +FW++ + K+ +
Sbjct 60 VIEKVPIISIDRYGKRLSVVLDRGVNKRCEFLFLKKKYKNKEGEYEQIFWRTQQGLKEHK 119
Query 258 PGVRTPTARAAGIPELHIVVDAHERYPYTFADKPAKTTREALPCGDYGLKVAGQLVAAVE 317
P V+ A G +LHI++DA+E+YP+ F + R LP GDY L ++ A VE
Sbjct 120 PRVKLT---AKGSNDLHILIDANEKYPWKFTN--CIVERVQLPAGDYALFYNNEIEAVVE 174
Query 318 RKALADLTSGVLNGNLKYQ-LTELAALPRAAVVVEDRYSEIF---AHSFARPTAIADGLA 373
RK+ + + + N + +Q L EL +A+V+E YS+ S P+ +A +A
Sbjct 175 RKSFENFKADIANLPILHQKLGELEKYKHSALVIEANYSDYLNPDKLSIYTPSYMAKVIA 234
Query 374 ELQIGFPNVPIVFCQTRKLAQEYTYRYLAAALT 406
E+ P I+F RKLA E+T R+ A ++
Sbjct 235 EIFAFHPKFQIIFAGNRKLANEWTLRFFQAIVS 267
>gi|332799960|ref|YP_004461459.1| ERCC4 domain-containing protein [Tepidanaerobacter sp. Re1]
gi|332697695|gb|AEE92152.1| ERCC4 domain protein [Tepidanaerobacter sp. Re1]
Length=356
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 84/287 (30%), Positives = 134/287 (47%), Gaps = 29/287 (10%)
Query 159 DSRLPYL--IRLPVGAGLVFATSDVWPRT-KALYCHRLDIADWPADPVVVDRVELRSCSR 215
+ + PY I++ L WP ++C R + D+ ++RV + + SR
Sbjct 13 NEKFPYRLSIKMDDKTKLCLRVQSKWPGAGTQIFCLR-ESEDYSDSIEEIERVPVVNLSR 71
Query 216 RGAAIDVVAARARENRSQLVHTMARGRQ------VVFWQSPKTRKQSRPGVRTPTARAAG 269
G + VV RA R + + + +Q +FW++ + ++ +P VR A G
Sbjct 72 YGKRLSVVLDRATNKRCEFLFLKKKYKQKEGEYEQIFWRTQQGLRERKPKVRLT---AQG 128
Query 270 IPELHIVVDAHERYPYTFADKPAKTTREALPCGDYGLKVAGQLVAAVERKALADLTSGVL 329
++H+++D +E+YP+ F D R+AL GDY L +VA VERK +L +
Sbjct 129 NAQIHVLIDTNEKYPWKFND--CTVERKALDAGDYALLRKDGIVAVVERKTFENLRIDLS 186
Query 330 NGNLKYQ-LTELAALPRAAVVVEDRYSEIF---AHSFARPTAIADGLAELQIGFPNVPIV 385
N + +Q L E+ A +A+VVE YS+ + P+ +A LAEL P I+
Sbjct 187 NLPIFHQKLGEMEAYTHSALVVEANYSDFLNPDKLTVYTPSFMAKALAELSALHPKTNII 246
Query 386 FCQTRKLAQEYTYRYLAAALTWFVDDADATTVFEPAAAEP----EPS 428
F RKLA E+T R+ A ++ VF AAE EPS
Sbjct 247 FAGNRKLANEWTLRFFEAI------ESHENDVFPDKAAEQAANYEPS 287
>gi|333898123|ref|YP_004471997.1| ERCC4 domain protein [Thermoanaerobacterium xylanolyticum LX-11]
gi|333113388|gb|AEF18325.1| ERCC4 domain protein [Thermoanaerobacterium xylanolyticum LX-11]
Length=357
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/272 (27%), Positives = 128/272 (48%), Gaps = 23/272 (8%)
Query 150 LLVAANPAEDSRLPYLIRLPVGAG----LVFATSDVWPRTKA-LYCHRLDIADWPADPVV 204
LL + + PY RL + L + WP + ++C + D + D V
Sbjct 4 LLWVLESTKSDKFPY--RLSIKKDDTVLLSLFVQNKWPGAGSQIFCLK-DTNEQSNDYEV 60
Query 205 VDRVELRSCSRRGAAIDVVAARARENRSQLVHTMARGR------QVVFWQSPKTRKQSRP 258
+++V + S R G + VV R R + + + + + +FW++ + K+ +P
Sbjct 61 IEKVPIISIDRYGKRLSVVLDRGVNKRCEFLFLKKKYKNKEGEYEQIFWRTQQGLKEHKP 120
Query 259 GVRTPTARAAGIPELHIVVDAHERYPYTFADKPAKTTREALPCGDYGLKVAGQLVAAVER 318
V+ A G LHI++DA+E+YP+ F + R LP GDY L ++ A VER
Sbjct 121 RVKLT---AKGNNNLHILIDANEKYPWKFNN--CIVERVQLPAGDYALFYNNEIEAVVER 175
Query 319 KALADLTSGVLNGNLKYQ-LTELAALPRAAVVVEDRYSEI---FAHSFARPTAIADGLAE 374
K+ + + + N + +Q L EL +A+V+E YS+ + P+ ++ +AE
Sbjct 176 KSFENFRADMANLPILHQKLGELEKYKHSALVIEANYSDYLNPYKLGVYTPSYMSKVIAE 235
Query 375 LQIGFPNVPIVFCQTRKLAQEYTYRYLAAALT 406
+ P ++F RKLA E+T R+ A ++
Sbjct 236 IFAFHPKFQVIFAGNRKLANEWTLRFFQAIIS 267
>gi|291280488|ref|YP_003497323.1| hypothetical protein DEFDS_2119 [Deferribacter desulfuricans
SSM1]
gi|290755190|dbj|BAI81567.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
Length=356
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/259 (27%), Positives = 119/259 (46%), Gaps = 23/259 (8%)
Query 162 LPYLIRLPVGAGLVFAT--SDVWPRTKA-LYCHRLDIADWPADPVVVDRVELRSCSRRGA 218
PY + + G+ + + D WP K ++C + D D +++ VE+ + + G+
Sbjct 20 FPYKLFITKGSDTILSLLLQDKWPGEKGHIFCLKNDEPFSVNDNEIIEEVEINNFKKFGS 79
Query 219 AIDVVAARARENRSQLVHTMARGR-------QVVFWQSPKTRKQSRPGVRTPTARAAGIP 271
I + R + R + + + + Q+ F ++ V P I
Sbjct 80 KISITLKRNTKKRCEFLFLEKKYKNKEGTYTQIFFRTQRGITERKLKNVYIPKVNKKDIT 139
Query 272 ELHIVVDAHERYPYTFADKPAKTTREA-LPCGDYGLKVA-GQLVAAVERKALADLTSGVL 329
I + ++E+YPY F P+ + + LP GDY L+ + G LVA VERK L + +
Sbjct 140 ---ITISSNEKYPYNF---PSFSVKFGYLPLGDYALEDSLGNLVAIVERKTLNNFCKELS 193
Query 330 NGNLK-YQLTELAALPRAAVVVEDRYSEIF----AHSFARPTAIADGLAELQIGFPNVPI 384
N +L +L EL +LP AA+VVE YS+ F + + IA + +L +PI
Sbjct 194 NFDLFIMKLLELQSLPHAALVVEANYSDFFNPKKVGNKVSISLIAKLIHQLFAKTNKLPI 253
Query 385 VFCQTRKLAQEYTYRYLAA 403
+F RK+A+ + +Y A
Sbjct 254 IFAGNRKMAEYWVTQYFIA 272
>gi|302343262|ref|YP_003807791.1| ERCC4 domain protein [Desulfarculus baarsii DSM 2075]
gi|322420477|ref|YP_004199700.1| ERCC4 domain-containing protein [Geobacter sp. M18]
gi|301639875|gb|ADK85197.1| ERCC4 domain protein [Desulfarculus baarsii DSM 2075]
gi|320126864|gb|ADW14424.1| ERCC4 domain protein [Geobacter sp. M18]
Length=160
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/137 (35%), Positives = 72/137 (53%), Gaps = 7/137 (5%)
Query 270 IPELHIVVDAHERYPYTFADKPAKTTREALPCGDYGLKVAGQLVAAVERKALADLTSGVL 329
+ + +VVD E+ PY+F R+ALP GDY L V + AVERK+L D S V+
Sbjct 2 MDRITVVVDTREQEPYSFDSDKVSAVRKALPAGDYSL-VGLEERVAVERKSLTDFVSTVI 60
Query 330 NGNLKY--QLTELAALPRAAVVVEDRYSEIFAHSF---ARPTAIADGLAELQIGFPNVPI 384
G ++ +L +L+A A VVVE + ++ + A P A+ +A + + F VP+
Sbjct 61 RGRKRFHRELEKLSAYESACVVVECNFRDLVDGRYRSDAHPHALIGTVASIVVDF-GVPV 119
Query 385 VFCQTRKLAQEYTYRYL 401
FC R+ A + YL
Sbjct 120 YFCSDRQAACRFVEEYL 136
>gi|78356966|ref|YP_388415.1| hypothetical protein Dde_1923 [Desulfovibrio alaskensis G20]
gi|116751205|ref|YP_847892.1| ERCC4 domain-containing protein [Syntrophobacter fumaroxidans
MPOB]
gi|78219371|gb|ABB38720.1| ERCC4 domain protein [Desulfovibrio alaskensis G20]
gi|116700269|gb|ABK19457.1| ERCC4 domain protein [Syntrophobacter fumaroxidans MPOB]
Length=160
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/137 (35%), Positives = 72/137 (53%), Gaps = 7/137 (5%)
Query 270 IPELHIVVDAHERYPYTFADKPAKTTREALPCGDYGLKVAGQLVAAVERKALADLTSGVL 329
+ + +VVD E+ PY+F R+ALP GDY L V + AVERK+L D S V+
Sbjct 2 MDRITVVVDTREQEPYSFDTDKVSAVRKALPAGDYSL-VGLEERVAVERKSLTDFVSTVI 60
Query 330 NGNLKY--QLTELAALPRAAVVVEDRYSEIFAHSF---ARPTAIADGLAELQIGFPNVPI 384
G ++ +L +L+A A VVVE + ++ + A P A+ +A + + F VP+
Sbjct 61 RGRKRFHRELEKLSAYESACVVVECNFRDLVDGRYRSDAHPHALIGTVASIVVDF-GVPV 119
Query 385 VFCQTRKLAQEYTYRYL 401
FC R+ A + YL
Sbjct 120 YFCSDRQAACRFVEEYL 136
>gi|300088768|ref|YP_003759290.1| ERCC4 domain-containing protein [Dehalogenimonas lykanthroporepellens
BL-DC-9]
gi|299528501|gb|ADJ26969.1| ERCC4 domain protein [Dehalogenimonas lykanthroporepellens BL-DC-9]
Length=160
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/137 (35%), Positives = 72/137 (53%), Gaps = 7/137 (5%)
Query 270 IPELHIVVDAHERYPYTFADKPAKTTREALPCGDYGLKVAGQLVAAVERKALADLTSGVL 329
+ + +VVD E+ PY+F R+ALP GDY L V + AVERK+L D S V+
Sbjct 2 MDRITVVVDTREQEPYSFDSDKVSAVRKALPAGDYSL-VGLEERVAVERKSLTDFVSTVI 60
Query 330 NGNLKY--QLTELAALPRAAVVVEDRYSEIFAHSF---ARPTAIADGLAELQIGFPNVPI 384
G ++ +L +L+A A VVVE + ++ + A P A+ +A + + F VP+
Sbjct 61 RGRKRFHRELEKLSAYEAACVVVECNFRDLVDGRYRSDAHPHALIGTVASIVVDF-GVPV 119
Query 385 VFCQTRKLAQEYTYRYL 401
FC R+ A + YL
Sbjct 120 YFCSDRQAACRFVEEYL 136
>gi|78355952|ref|YP_387401.1| hypothetical protein Dde_0905 [Desulfovibrio alaskensis G20]
Length=158
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/132 (36%), Positives = 70/132 (54%), Gaps = 7/132 (5%)
Query 275 IVVDAHERYPYTFADKPAKTTREALPCGDYGLKVAGQLVAAVERKALADLTSGVLNGNLK 334
+VVD E+ PY F + + R+ALP GDY ++ + AVERK++AD S V+ G +
Sbjct 6 VVVDTREQEPYGFDSESVASVRKALPAGDYSIE-GFETRVAVERKSMADFVSTVIRGRKR 64
Query 335 Y--QLTELAALPRAAVVVEDRYSEIFA---HSFARPTAIADGLAELQIGFPNVPIVFCQT 389
+ +L +L A VVVE Y +I S A P A+ +A + I F VP+ FC
Sbjct 65 FHKELEKLRHYDAACVVVEANYRDILGACYQSDAHPNALIGTIASIIIDF-GVPVYFCSD 123
Query 390 RKLAQEYTYRYL 401
R+ A + +L
Sbjct 124 RQAACRFVEEFL 135
>gi|342906348|gb|ABB37706.2| ERCC4 domain protein [Desulfovibrio alaskensis G20]
Length=156
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/132 (36%), Positives = 70/132 (54%), Gaps = 7/132 (5%)
Query 275 IVVDAHERYPYTFADKPAKTTREALPCGDYGLKVAGQLVAAVERKALADLTSGVLNGNLK 334
+VVD E+ PY F + + R+ALP GDY ++ + AVERK++AD S V+ G +
Sbjct 4 VVVDTREQEPYGFDSESVASVRKALPAGDYSIE-GFETRVAVERKSMADFVSTVIRGRKR 62
Query 335 Y--QLTELAALPRAAVVVEDRYSEIFA---HSFARPTAIADGLAELQIGFPNVPIVFCQT 389
+ +L +L A VVVE Y +I S A P A+ +A + I F VP+ FC
Sbjct 63 FHKELEKLRHYDAACVVVEANYRDILGACYQSDAHPNALIGTIASIIIDF-GVPVYFCSD 121
Query 390 RKLAQEYTYRYL 401
R+ A + +L
Sbjct 122 RQAACRFVEEFL 133
>gi|317153302|ref|YP_004121350.1| ERCC4 domain-containing protein [Desulfovibrio aespoeensis Aspo-2]
gi|316943553|gb|ADU62604.1| ERCC4 domain protein [Desulfovibrio aespoeensis Aspo-2]
Length=160
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/137 (35%), Positives = 72/137 (53%), Gaps = 7/137 (5%)
Query 270 IPELHIVVDAHERYPYTFADKPAKTTREALPCGDYGLKVAGQLVAAVERKALADLTSGVL 329
+ + +VVD E+ PY+F T R+AL GDY L V + AVERK+L D S V+
Sbjct 2 MDRITVVVDTREQEPYSFDTDKVSTVRKALLAGDYSL-VGLEERVAVERKSLTDFVSTVI 60
Query 330 NGNLKY--QLTELAALPRAAVVVEDRYSEIFAHSF---ARPTAIADGLAELQIGFPNVPI 384
G ++ +L +L+A A VVVE + ++ + A P A+ +A + + F VP+
Sbjct 61 RGRKRFHRELEKLSAYESACVVVECNFRDLVDGRYRSDAHPHALIGTVASIVVDF-GVPV 119
Query 385 VFCQTRKLAQEYTYRYL 401
FC R+ A + YL
Sbjct 120 YFCSDRQAACRFVEEYL 136
>gi|89885865|ref|YP_516063.1| ERCC4 [Rhodoferax ferrireducens T118]
gi|89347863|gb|ABD72065.1| ERCC4 [Rhodoferax ferrireducens T118]
Length=190
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/172 (28%), Positives = 87/172 (51%), Gaps = 15/172 (8%)
Query 261 RTPTARAAGIPELHIVVDAHERYPYTFADKP---AKTTREALPCGDYGLKVAGQLVAAVE 317
R +A + IP+ ++VD E+ P+TF P A R LP GDY + LV A+E
Sbjct 17 RGGSAITSKIPKPVVLVDTREQQPFTFERFPNWIASERRTTLPTGDYSILDMEHLV-ALE 75
Query 318 RKALADLTSGVLNGNLKY--QLTELAALPRAAVVVEDRYSEIFA------HSFARPTAIA 369
RK+L DL +++ ++ + L A++VE Y ++ + ++ A P ++
Sbjct 76 RKSLPDLIGTLMHNRQRFFRECERLTTFRWRALLVEASYHDVKSPYVNCEYTSAAPNGVS 135
Query 370 DGLAELQIGFPNVPIVFC-QTRKLAQEYTYRYLAAALT-WFVDDADATTVFE 419
L L++ F +P+++ + R LA+E T +L+ T W++++ V +
Sbjct 136 GTLDALEVKF-GIPVIYASKHRALAEEKTASWLSKLYTYWWLEENGMGRVLQ 186
>gi|226359861|ref|YP_002777639.1| hypothetical protein ROP_04470 [Rhodococcus opacus B4]
gi|226238346|dbj|BAH48694.1| hypothetical protein [Rhodococcus opacus B4]
Length=200
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/51 (55%), Positives = 36/51 (71%), Gaps = 0/51 (0%)
Query 413 DATTVFEPAAAEPEPSSAELRAWAKSVGLPVSDRGRLRPQILQAWRAAHPR 463
DA T + AA P PS+AE+R WA+ G PVSDRGRLR ++ +A+ AAHP
Sbjct 149 DAPTADDGNAAAPAPSTAEVRTWAREHGFPVSDRGRLRAEVWEAFAAAHPE 199
>gi|116749850|ref|YP_846537.1| hypothetical protein Sfum_2422 [Syntrophobacter fumaroxidans
MPOB]
gi|116751413|ref|YP_848100.1| hypothetical protein Sfum_3998 [Syntrophobacter fumaroxidans
MPOB]
gi|116698914|gb|ABK18102.1| conserved hypothetical protein [Syntrophobacter fumaroxidans
MPOB]
gi|116700477|gb|ABK19665.1| conserved hypothetical protein [Syntrophobacter fumaroxidans
MPOB]
Length=159
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/136 (33%), Positives = 61/136 (45%), Gaps = 9/136 (6%)
Query 273 LHIVVDAHERYPYTFADKPAKTTREALPCGDYGLKVAGQLVAAVERKALADLTSGVLNGN 332
+ +++D E+ PY F +T R LP GDY L V A+ERK+L DL G L+ +
Sbjct 1 MRLIIDTREQTPYGFEGYDVQTERGTLPTGDYSLAGFEDRV-AIERKSLDDLI-GCLSHD 58
Query 333 ---LKYQLTELAALPRAAVVVEDRYSEIFAHSFARPTAIADGLAELQIGFPN---VPIVF 386
+ +L AL +VV+E S I A F R + E F P +F
Sbjct 59 RERFEKELCRAKALDFFSVVIEAPLSNILASRF-RSRMTVNAAVETIAAFSTRYRTPFLF 117
Query 387 CQTRKLAQEYTYRYLA 402
C R + TY LA
Sbjct 118 CGNRAGGERMTYSLLA 133
>gi|303246620|ref|ZP_07332898.1| ERCC4 domain protein [Desulfovibrio fructosovorans JJ]
gi|302491960|gb|EFL51838.1| ERCC4 domain protein [Desulfovibrio fructosovorans JJ]
Length=159
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/136 (31%), Positives = 64/136 (48%), Gaps = 8/136 (5%)
Query 273 LHIVVDAHERYPYTFADKPAKTTREALPCGDYGLKVAGQLVAAVERKALADLTSGVLNGN 332
+ I+ D E+ ++FA A+ R ALP DY L V +ERK L DL S ++ N
Sbjct 1 MRIIADTREQRVFSFAKYEAEVERAALPTADYSLPGFEDRV-GIERKELGDLISCLMGAN 59
Query 333 ---LKYQLTELAALPRAAVVVEDRYSEIFAHSF---ARPTAIADGLAELQIGFPNVPIVF 386
+L L++ AVVVE ++ + RP A+ + Q+ + VP +F
Sbjct 60 RERFVKELRRLSSYELKAVVVEASMRDVADGQYRSEMRPHAVLQSVFAFQVRYA-VPFLF 118
Query 387 CQTRKLAQEYTYRYLA 402
C R A+ T+ LA
Sbjct 119 CGDRAGAEYTTFWLLA 134
>gi|116749931|ref|YP_846618.1| hypothetical protein Sfum_2504 [Syntrophobacter fumaroxidans
MPOB]
gi|116698995|gb|ABK18183.1| conserved hypothetical protein [Syntrophobacter fumaroxidans
MPOB]
Length=178
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/133 (31%), Positives = 65/133 (49%), Gaps = 7/133 (5%)
Query 275 IVVDAHERYPYTFADKPAKTTREALPCGDYGLKVAGQLVAAVERKALADLTSGVLNGNLK 334
+++D+ E+ PY FA +T R L GDY L V A+ERK+L DL + + +
Sbjct 3 VIIDSREQIPYDFATYDVETERGTLHTGDYSLAGFEDRV-AIERKSLDDLIGCLCHDRER 61
Query 335 Y--QLTELAALPRAAVVVEDRYSEIFAHSF-ARPT--AIADGLAELQIGFPNVPIVFCQT 389
+ +L AL +VV+E S+I F +R T A + +A + P +FC +
Sbjct 62 FEKELCRAKALDFFSVVIEGALSDILDGRFRSRMTVNAAVESIAAFSTRY-RTPFLFCGS 120
Query 390 RKLAQEYTYRYLA 402
R + T+ L+
Sbjct 121 RAGGERMTFSLLS 133
>gi|283852579|ref|ZP_06369846.1| ERCC4 domain protein [Desulfovibrio sp. FW1012B]
gi|283572027|gb|EFC20020.1| ERCC4 domain protein [Desulfovibrio sp. FW1012B]
Length=147
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/134 (31%), Positives = 65/134 (49%), Gaps = 7/134 (5%)
Query 273 LHIVVDAHERYPYTFADKPAKTTREALPCGDYGLKVAGQLVAAVERKALADLTS--GVLN 330
+ I+VD E+ P++FA + T L GDY + LV AVERK+L DL + G
Sbjct 1 MRIIVDTREQAPFSFAGYDVEITAGTLQAGDYSIPGLESLV-AVERKSLPDLVACLGRER 59
Query 331 GNLKYQLTELAALPRAAVVVEDRYSEIFAHSF---ARPTAIADGLAELQIGFPNVPIVFC 387
+++L L AAVVVE S++ ++ P A + + + + F
Sbjct 60 ERFEHELERLRGHEAAAVVVESPLSDLVTGNYRSKLNPQAAYESVVAFMCRY-RLTFYFA 118
Query 388 QTRKLAQEYTYRYL 401
Q R+ A+ +TY +L
Sbjct 119 QDRRGAERFTYSFL 132
>gi|291452963|ref|ZP_06592353.1| modification methylase SalI [Streptomyces albus J1074]
gi|12229860|sp|Q53609.1|MTS1_STRAL RecName: Full=Modification methylase SalI; Short=M.SalI; AltName:
Full=Adenine-specific methyltransferase SalI
gi|402238|gb|AAA81887.1| SalI modification methyltransferase [Streptomyces albus]
gi|291355912|gb|EFE82814.1| modification methylase SalI [Streptomyces albus J1074]
gi|1093604|prf||2104270B SalI methyltransferase
Length=587
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/37 (60%), Positives = 30/37 (82%), Gaps = 0/37 (0%)
Query 425 PEPSSAELRAWAKSVGLPVSDRGRLRPQILQAWRAAH 461
P PS++E+RAWA++ G+ V DRGRLRP++ AWR AH
Sbjct 533 PGPSASEVRAWARANGVCVPDRGRLRPEVWDAWRQAH 569
>gi|328952270|ref|YP_004369604.1| ERCC4 domain protein [Desulfobacca acetoxidans DSM 11109]
gi|328452594|gb|AEB08423.1| ERCC4 domain protein [Desulfobacca acetoxidans DSM 11109]
Length=163
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/139 (31%), Positives = 66/139 (48%), Gaps = 8/139 (5%)
Query 273 LHIVVDAHERYPYTFADKPAKTTREALPCGDYGLKVAGQLVAAVERKALADLTSGVLNGN 332
L+I+VD E+ P++F ALP GDY L V A+ERK L DL + +++ N
Sbjct 3 LNILVDTREQVPFSFGGYDVAVEPAALPVGDYSLPGFVDRV-AIERKELNDLIACLMDKN 61
Query 333 ---LKYQLTELAALPRAAVVVEDRYSEIFAHSF---ARPTAIADGLAELQIGFPNVPIVF 386
+ +L + + AVVVE ++ + +P A L Q+ + VP V+
Sbjct 62 RDRFERELAKGKSYELFAVVVEAALEDVRRGDYRSAMKPHAALQSLCAFQVRY-RVPFVW 120
Query 387 CQTRKLAQEYTYRYLAAAL 405
R+ A+ T+ LA L
Sbjct 121 AGDRQGAEYMTFSLLAKYL 139
>gi|296271368|ref|YP_003654000.1| hypothetical protein Tbis_3417 [Thermobispora bispora DSM 43833]
gi|296094155|gb|ADG90107.1| hypothetical protein Tbis_3417 [Thermobispora bispora DSM 43833]
Length=111
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 27/35 (78%), Gaps = 0/35 (0%)
Query 427 PSSAELRAWAKSVGLPVSDRGRLRPQILQAWRAAH 461
SAE+RAWAK+ G VSDRGR+ +IL+A+ AAH
Sbjct 77 EKSAEIRAWAKAHGHRVSDRGRISREILEAYEAAH 111
>gi|340624705|ref|YP_004743158.1| Hef nuclease [Methanococcus maripaludis XI]
gi|339904973|gb|AEK20415.1| Hef nuclease [Methanococcus maripaludis X1]
Length=755
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 38/150 (26%), Positives = 68/150 (46%), Gaps = 16/150 (10%)
Query 242 RQVVFWQSPKTRKQSRPGVRTPTARAAGIPE-LHIVVDAHERYPYTFADKPAKTTREALP 300
R VV ++ K+ +P + +G+P+ I+VD+ ER+ + + A+ + L
Sbjct 520 RSVVSSKTSDNLKEKKP-TKLDKKSKSGLPDKATIIVDSRERHIGRYLSEKAEVEFKTLE 578
Query 301 CGDYGLKVAGQLVAAVERKALADLTSGVLNGNLKYQLTELAALPRAAVVVEDRYSEIFAH 360
GDY L AVERK D + +++ L Q+ +L R V++E +
Sbjct 579 IGDYILSDR----VAVERKTAEDFENSIIDKRLFNQVMDLKKYERPLVIIE-------GN 627
Query 361 SFAR--PTAIADGLAELQIGFPNVPIVFCQ 388
F R AI + + I + +PI+F +
Sbjct 628 EFVRIHENAIRGMMFSIMIDYQ-IPIMFSK 656
>gi|117927427|ref|YP_871978.1| putative Lsr2-like protein [Acidothermus cellulolyticus 11B]
gi|117647890|gb|ABK51992.1| putative Lsr2-like protein [Acidothermus cellulolyticus 11B]
Length=134
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/31 (52%), Positives = 27/31 (88%), Gaps = 0/31 (0%)
Query 431 ELRAWAKSVGLPVSDRGRLRPQILQAWRAAH 461
++RAWAKS G+PV++RGR+ ++++A+ AAH
Sbjct 104 DIRAWAKSKGIPVNERGRISAEVIEAYNAAH 134
>gi|339727894|emb|CCC39004.1| ATP-dependent RNA helicase/nuclease Hef [Haloquadratum walsbyi
C23]
Length=855
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 41/126 (33%), Positives = 57/126 (46%), Gaps = 14/126 (11%)
Query 273 LHIVVDAHE---RYPYTFADKPAKTTR-EALPCGDYGLKVAGQLVAAVERKALADLTSGV 328
+ IVVD E P + + + A TR E L GDY L AVERK+ D +
Sbjct 640 IEIVVDQRELDSTVPRSLSTRDAIQTRLETLAVGDYVLSDR----VAVERKSATDFLDTL 695
Query 329 LNGN--LKYQLTELA-ALPRAAVVVEDRYSEIFAHSFARPTAIADGLAELQIGFPNVPIV 385
L+GN L Q +L A R +++E + ++ P+AI LA L + F I
Sbjct 696 LDGNRSLFEQTGDLVRAYGRPVLILEGELTTLYTERNIDPSAIQGALASLAVDF---DIS 752
Query 386 FCQTRK 391
QTR
Sbjct 753 ILQTRN 758
>gi|332158155|ref|YP_004423434.1| Hef nuclease [Pyrococcus sp. NA2]
gi|331033618|gb|AEC51430.1| Hef nuclease [Pyrococcus sp. NA2]
Length=749
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 42/159 (27%), Positives = 66/159 (42%), Gaps = 29/159 (18%)
Query 292 AKTTREALPCGDYGLKVAGQLVAAVERKALADLTSGVLNGNLKYQLTELA-ALPRAAVVV 350
AK + L GDY V+ ++ A+ERK+ D +++G L Q+ L A PR ++V
Sbjct 559 AKIEVKNLDVGDYI--VSDEV--AIERKSANDFIQSIIDGRLFDQVKRLKEAYPRPVIIV 614
Query 351 EDRYSEIFAHSFARPTAIADGLAELQIGFPNVPIVFCQTRKLAQEYTYRYLAAALTWFVD 410
E +++ P AI + + + F VPI+F T
Sbjct 615 E---GQLYGIRNVHPNAIRGAIVSVIVDF-GVPIIFTST--------------------P 650
Query 411 DADATTVFEPAAAEPEPSSAELRAWAKSVGLPVSDRGRL 449
D A +F A E E E+R L +S+R R+
Sbjct 651 DETAQYIFFMAKREQEERKKEVRIRGDKKALTLSERQRM 689
>gi|110666996|ref|YP_656807.1| Hef nuclease [Haloquadratum walsbyi DSM 16790]
gi|109624743|emb|CAJ51150.1| probable nuclease domain protein/ probable ATP-dependent RNA
helicase [Haloquadratum walsbyi DSM 16790]
Length=851
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 41/125 (33%), Positives = 57/125 (46%), Gaps = 14/125 (11%)
Query 273 LHIVVDAHE---RYPYTFADKPAKTTR-EALPCGDYGLKVAGQLVAAVERKALADLTSGV 328
+ IVVD E P + + + A TR E L GDY L AVERK+ D +
Sbjct 636 IEIVVDQRELDSTVPRSLSTRDAIQTRLETLAVGDYVLSDR----VAVERKSATDFLDTL 691
Query 329 LNGN--LKYQLTELA-ALPRAAVVVEDRYSEIFAHSFARPTAIADGLAELQIGFPNVPIV 385
L+GN L Q +L A R +++E + ++ P+AI LA L + F I
Sbjct 692 LDGNRSLFEQTGDLVRAYGRPVLILEGELTTLYTERNIDPSAIQGALASLAVDF---DIS 748
Query 386 FCQTR 390
QTR
Sbjct 749 ILQTR 753
>gi|150399457|ref|YP_001323224.1| Hef nuclease [Methanococcus vannielii SB]
gi|150012160|gb|ABR54612.1| ERCC4 domain protein [Methanococcus vannielii SB]
Length=776
Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 31/116 (27%), Positives = 54/116 (47%), Gaps = 12/116 (10%)
Query 275 IVVDAHERYPYTFADKPAKTTREALPCGDYGLKVAGQLVAAVERKALADLTSGVLNGNLK 334
I++D+ ER+ + K A + L GDY + VA VERK D S +++ L
Sbjct 564 IIIDSRERHIGRYISKKANLEFKTLEIGDY---IVSDRVA-VERKTAEDFESSIIDKRLF 619
Query 335 YQLTELAALPRAAVVVE-DRYSEIFAHSFARPTAIADGLAELQIGFPNVPIVFCQT 389
QL +L + +++E D + + R AI + + I + +PI+F +
Sbjct 620 NQLIDLKKYEKPLLIIEGDNFYRL------RENAIQGTIFSIMIDYQ-IPIIFSKN 668
>gi|336120386|ref|YP_004575171.1| hypothetical protein MLP_47540 [Microlunatus phosphovorus NM-1]
gi|334688183|dbj|BAK37768.1| hypothetical protein MLP_47540 [Microlunatus phosphovorus NM-1]
Length=56
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 22/47 (47%), Positives = 30/47 (64%), Gaps = 4/47 (8%)
Query 138 CRTPPVPSHSVELLVAANPAEDSRLPYLIRLPVGA-GLVFATSDVWP 183
C+ VP +LL+A NP DS LPYL+R+P+G G+V T + WP
Sbjct 3 CQAGHVPD---DLLMARNPESDSTLPYLVRIPLGVDGIVVKTRETWP 46
>gi|271967651|ref|YP_003341847.1| hypothetical protein Sros_6389 [Streptosporangium roseum DSM
43021]
gi|270510826|gb|ACZ89104.1| hypothetical protein Sros_6389 [Streptosporangium roseum DSM
43021]
Length=264
Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 19/35 (55%), Positives = 27/35 (78%), Gaps = 0/35 (0%)
Query 428 SSAELRAWAKSVGLPVSDRGRLRPQILQAWRAAHP 462
+S +RAWAK+ G VS+RGR+ P+I+ A+ AAHP
Sbjct 21 TSLRMRAWAKAKGYSVSERGRVAPEIIDAFLAAHP 55
>gi|271970317|ref|YP_003344513.1| hypothetical protein Sros_9149 [Streptosporangium roseum DSM
43021]
gi|270513492|gb|ACZ91770.1| hypothetical protein Sros_9149 [Streptosporangium roseum DSM
43021]
Length=110
Score = 42.7 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 19/33 (58%), Positives = 27/33 (82%), Gaps = 0/33 (0%)
Query 429 SAELRAWAKSVGLPVSDRGRLRPQILQAWRAAH 461
SA++RAWAKS GL VS+RGR+ +I++ + AAH
Sbjct 78 SADIRAWAKSHGLNVSERGRIASKIVEQYEAAH 110
>gi|120601137|ref|YP_965537.1| hypothetical protein Dvul_0086 [Desulfovibrio vulgaris DP4]
gi|120561366|gb|ABM27110.1| hypothetical protein Dvul_0086 [Desulfovibrio vulgaris DP4]
Length=177
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/121 (28%), Positives = 55/121 (46%), Gaps = 8/121 (6%)
Query 273 LHIVVDAHERYPYTFADKPA-KTTREALPCGDYGLKVAGQLVAAVERKALADLTSGVLNG 331
++++ D E+ P F P T L GDY L + A+ERK+L DL + V
Sbjct 1 MNVLTDTREQRPLDFTRWPEIAVTTATLRAGDYSL-AGFEDRFAIERKSLPDLVASVTTH 59
Query 332 NLKY--QLTELAALPRAAVVVEDRYSEIFAHSF---ARPTAIADGLAELQIGFPNVPIVF 386
++ +L L AA+VVE ++ H + A P ++ LA + + VP ++
Sbjct 60 RERFERELQTLRGYDHAAIVVEGDMEQVLRHEYRSQASPDSVLQSLAAFHVRY-RVPTLW 118
Query 387 C 387
Sbjct 119 A 119
Lambda K H
0.319 0.132 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 973451812480
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40