BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2530c
Length=139
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609667|ref|NP_217046.1| hypothetical protein Rv2530c [Mycob... 278 2e-73
gi|225874392|ref|YP_002755851.1| Mycobacterium tuberculosis PIN ... 114 5e-24
gi|333815879|gb|AEG08546.1| PIN domain protein family protein [S... 107 7e-22
gi|294339103|emb|CAZ87457.1| conserved hypothetical protein; put... 105 2e-21
gi|15842022|ref|NP_337059.1| hypothetical protein MT2569 [Mycoba... 105 2e-21
gi|87123102|ref|ZP_01078953.1| hypothetical protein RS9917_04565... 105 2e-21
gi|15609631|ref|NP_217010.1| hypothetical protein Rv2494 [Mycoba... 105 2e-21
gi|334319720|ref|YP_004556349.1| PIN domain-containing protein f... 105 3e-21
gi|254232624|ref|ZP_04925951.1| conserved hypothetical protein [... 104 4e-21
gi|289758626|ref|ZP_06518004.1| conserved hypothetical protein [... 103 9e-21
gi|241518561|ref|YP_002979189.1| PIN domain protein family prote... 103 9e-21
gi|113953974|ref|YP_729372.1| hypothetical protein sync_0135 [Sy... 102 2e-20
gi|254420497|ref|ZP_05034221.1| Mycobacterium tuberculosis PIN d... 102 3e-20
gi|262201135|ref|YP_003272343.1| PIN domain-containing protein f... 101 3e-20
gi|116624591|ref|YP_826747.1| PilT domain-containing protein [Ca... 101 4e-20
gi|134291479|ref|YP_001115248.1| PilT domain-containing protein ... 97.4 6e-19
gi|206601848|gb|EDZ38331.1| Hypothetical protein CGL2_11278040 [... 96.3 1e-18
gi|304413692|ref|ZP_07395136.1| PIN domain-containing addiction ... 94.4 5e-18
gi|269954934|ref|YP_003324723.1| PIN domain-containing protein f... 93.6 1e-17
gi|344199817|ref|YP_004784143.1| PIN domain-containing protein f... 93.2 1e-17
gi|330818818|ref|YP_004351035.1| PilT domain-containing protein ... 92.4 2e-17
gi|336115788|ref|YP_004570554.1| hypothetical protein MLP_01370 ... 89.0 2e-16
gi|121595342|ref|YP_987238.1| PilT domain-containing protein [Ac... 86.7 1e-15
gi|340628304|ref|YP_004746756.1| hypothetical protein MCAN_33461... 85.9 2e-15
gi|15610456|ref|NP_217837.1| hypothetical protein Rv3320c [Mycob... 85.1 3e-15
gi|326772971|ref|ZP_08232255.1| toxin-antitoxin system, toxin co... 83.6 9e-15
gi|289747139|ref|ZP_06506517.1| conserved hypothetical protein [... 83.6 1e-14
gi|24214369|ref|NP_711850.1| hypothetical protein LA_1669 [Lepto... 83.2 1e-14
gi|336120816|ref|YP_004575602.1| hypothetical protein MLP_51850 ... 82.8 2e-14
gi|45657964|ref|YP_002050.1| hypothetical protein LIC12116 [Lept... 82.4 2e-14
gi|317967919|ref|ZP_07969309.1| hypothetical protein SCB02_00127... 82.0 3e-14
gi|340358885|ref|ZP_08681388.1| PIN family toxin-antitoxin syste... 80.1 1e-13
gi|114331350|ref|YP_747572.1| PilT domain-containing protein [Ni... 79.3 2e-13
gi|240169388|ref|ZP_04748047.1| hypothetical protein MkanA1_0874... 77.4 6e-13
gi|256826277|ref|YP_003150237.1| nucleic acid-binding protein [K... 77.0 8e-13
gi|336179654|ref|YP_004585029.1| PIN domain-containing protein f... 75.5 2e-12
gi|15607757|ref|NP_215131.1| hypothetical protein Rv0617 [Mycoba... 72.8 2e-11
gi|87123276|ref|ZP_01079127.1| hypothetical protein RS9917_05435... 69.3 2e-10
gi|324997204|ref|ZP_08118316.1| toxin [Pseudonocardia sp. P1] 62.8 2e-08
gi|320109069|ref|YP_004184659.1| PIN domain-containing protein f... 61.2 5e-08
gi|16264146|ref|NP_436938.1| hypothetical protein SM_b20412 [Sin... 57.8 6e-07
gi|320108460|ref|YP_004184050.1| PIN domain-containing protein f... 57.0 1e-06
gi|218459869|ref|ZP_03499960.1| hypothetical protein RetlK5_1036... 54.3 6e-06
gi|16264145|ref|NP_436937.1| hypothetical protein SM_b20411 [Sin... 53.9 7e-06
gi|124515583|gb|EAY57093.1| conserved hypothetical protein [Lept... 52.8 2e-05
gi|190895067|ref|YP_001985360.1| hypothetical protein RHECIAT_PC... 52.0 3e-05
gi|227876599|ref|ZP_03994709.1| conserved hypothetical protein [... 48.1 4e-04
gi|33865109|ref|NP_896668.1| hypothetical protein SYNW0573 [Syne... 45.1 0.003
gi|332797202|ref|YP_004458702.1| VapC-type toxin [Acidianus hosp... 43.1 0.014
gi|254430307|ref|ZP_05044010.1| hypothetical protein CPCC7001_19... 42.7 0.018
>gi|15609667|ref|NP_217046.1| hypothetical protein Rv2530c [Mycobacterium tuberculosis H37Rv]
gi|15842064|ref|NP_337101.1| hypothetical protein MT2605 [Mycobacterium tuberculosis CDC1551]
gi|31793711|ref|NP_856204.1| hypothetical protein Mb2559c [Mycobacterium bovis AF2122/97]
81 more sequence titles
Length=139
Score = 278 bits (711), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 138/139 (99%), Positives = 139/139 (100%), Gaps = 0/139 (0%)
Query 1 VTALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVST 60
+TALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVST
Sbjct 1 MTALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVST 60
Query 61 TPAIAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRL 120
TPAIAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRL
Sbjct 61 TPAIAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRL 120
Query 121 VTFDAALADSASAGLVEVL 139
VTFDAALADSASAGLVEVL
Sbjct 121 VTFDAALADSASAGLVEVL 139
>gi|225874392|ref|YP_002755851.1| Mycobacterium tuberculosis PIN domain protein [Acidobacterium
capsulatum ATCC 51196]
gi|225792658|gb|ACO32748.1| Mycobacterium tuberculosis PIN domain protein [Acidobacterium
capsulatum ATCC 51196]
Length=146
Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/125 (45%), Positives = 78/125 (63%), Gaps = 0/125 (0%)
Query 4 LLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVSTTPA 63
LLDVNVL+A+ WP+HVHH AQ+WF++ S +GWAT P+T+ G+VRI SN + + + T
Sbjct 5 LLDVNVLVAMFWPSHVHHVRAQQWFSEHSRHGWATCPLTQTGFVRIVSNPAFSKSAVTAR 64
Query 64 IAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRLVTF 123
AI L H FW D V + ++ D + H++VTD +LI LA + GRL+TF
Sbjct 65 DAIHVLQENLKHRSHVFWADSVGVNEAASFTHDRLIGHKQVTDAYLIGLAHHHQGRLLTF 124
Query 124 DAALA 128
D L
Sbjct 125 DRGLG 129
>gi|333815879|gb|AEG08546.1| PIN domain protein family protein [Sinorhizobium meliloti BL225C]
Length=147
Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/131 (45%), Positives = 74/131 (57%), Gaps = 0/131 (0%)
Query 1 VTALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVST 60
+T LLDVNVLIAL P+H+ H A WF WAT PITE G +RI N
Sbjct 1 MTFLLDVNVLIALIDPSHIGHDDAHEWFASIGQTAWATCPITENGVIRIVGNPEYPNSPG 60
Query 61 TPAIAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRL 120
+P A+ +A + SL GH FWPDDV L+ S + +VTD +L+ALA GG+L
Sbjct 61 SPLPAMEIVAKLRSLPGHVFWPDDVSLVGSSDIIPSKILTSGQVTDTYLLALAKARGGKL 120
Query 121 VTFDAALADSA 131
TFD L+ +A
Sbjct 121 ATFDRKLSAAA 131
>gi|294339103|emb|CAZ87457.1| conserved hypothetical protein; putative PIN domain [Thiomonas
sp. 3As]
Length=143
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/134 (45%), Positives = 77/134 (58%), Gaps = 1/134 (0%)
Query 2 TALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVSTT 61
T LLDVNVLIAL P HV H AA WF + S WAT P+TE G +RI + T
Sbjct 3 TFLLDVNVLIALIDPAHVQHDAAHHWFAETGSASWATCPLTENGLLRIVGHPRYPNTPGT 62
Query 62 PAIAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRLV 121
PA L A+ +L GH FWPDD+ L+ D + +H ++TD +L+ALA + G+L
Sbjct 63 PATVAVVLQALRALPGHHFWPDDISLLNPELILTDRLLSHTQITDSYLLALARHHSGKLA 122
Query 122 TFDAAL-ADSASAG 134
+FD L AD+ G
Sbjct 123 SFDRKLVADAVVDG 136
>gi|15842022|ref|NP_337059.1| hypothetical protein MT2569 [Mycobacterium tuberculosis CDC1551]
gi|254366798|ref|ZP_04982840.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|13882299|gb|AAK46873.1| hypothetical protein MT2569 [Mycobacterium tuberculosis CDC1551]
gi|134152308|gb|EBA44353.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|323718902|gb|EGB28056.1| toxin protein [Mycobacterium tuberculosis CDC1551A]
Length=141
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/147 (47%), Positives = 87/147 (60%), Gaps = 20/147 (13%)
Query 3 ALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVSTTP 62
ALLDVN L+AL W +H+HHA + WFT ++ GWAT P+TEAG+VR+S+N V+ +
Sbjct 2 ALLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGI 61
Query 63 AIAIAQLAAMTSLAGHTFWP-------DDVPLIVGSAGDRDAVSNHRRVTDCHLIALAAR 115
A A L A+ ++ GH F DDVPLIVG +R+VTD HL+ LA R
Sbjct 62 ADARPVLVALRAVGGHRFLADDVSLVDDDVPLIVG----------YRQVTDAHLLTLARR 111
Query 116 YGGRLVTFDAA---LADSASAGLVEVL 139
G RLVTFDA LA VE+L
Sbjct 112 RGVRLVTFDAGVFTLAQQRPKTPVELL 138
>gi|87123102|ref|ZP_01078953.1| hypothetical protein RS9917_04565 [Synechococcus sp. RS9917]
gi|86168822|gb|EAQ70078.1| hypothetical protein RS9917_04565 [Synechococcus sp. RS9917]
Length=149
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/132 (44%), Positives = 74/132 (57%), Gaps = 0/132 (0%)
Query 3 ALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVSTTP 62
ALLDVNVLIAL P HVHH A RWF +S GWAT P+T+ +RI SN P
Sbjct 6 ALLDVNVLIALLDPQHVHHEPAHRWFQANASYGWATCPLTQNALLRILSNPRYPNSPGGP 65
Query 63 AIAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRLVT 122
A + L M S GH FWPD + + + +H ++TD +L+ALA GG L++
Sbjct 66 ASVMPLLQGMLSHPGHLFWPDLLSWSTDGELQAELLLHHGQITDTYLLALAVHQGGCLMS 125
Query 123 FDAALADSASAG 134
FDA L+ A G
Sbjct 126 FDARLSTCAVPG 137
>gi|15609631|ref|NP_217010.1| hypothetical protein Rv2494 [Mycobacterium tuberculosis H37Rv]
gi|31793674|ref|NP_856167.1| hypothetical protein Mb2522 [Mycobacterium bovis AF2122/97]
gi|121638376|ref|YP_978600.1| hypothetical protein BCG_2514 [Mycobacterium bovis BCG str. Pasteur
1173P2]
68 more sequence titles
Length=141
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/147 (47%), Positives = 87/147 (60%), Gaps = 20/147 (13%)
Query 3 ALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVSTTP 62
ALLDVN L+AL W +H+HHA + WFT ++ GWAT P+TEAG+VR+S+N V+ +
Sbjct 2 ALLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGI 61
Query 63 AIAIAQLAAMTSLAGHTFWP-------DDVPLIVGSAGDRDAVSNHRRVTDCHLIALAAR 115
A A L A+ ++ GH F DDVPLIVG +R+VTD HL+ LA R
Sbjct 62 ADARRVLVALRAVGGHRFLADDVSLVDDDVPLIVG----------YRQVTDAHLLTLARR 111
Query 116 YGGRLVTFDAA---LADSASAGLVEVL 139
G RLVTFDA LA VE+L
Sbjct 112 RGVRLVTFDAGVFTLAQQRPKTPVELL 138
>gi|334319720|ref|YP_004556349.1| PIN domain-containing protein family protein [Sinorhizobium meliloti
AK83]
gi|334097459|gb|AEG55469.1| PIN domain protein family protein [Sinorhizobium meliloti AK83]
Length=147
Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/131 (44%), Positives = 73/131 (56%), Gaps = 0/131 (0%)
Query 1 VTALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVST 60
+T LLDVNVLIAL P+H+ H A WF WAT PITE G +RI N
Sbjct 1 MTFLLDVNVLIALIDPSHIGHDDAHEWFASIGQTTWATCPITENGVIRIVGNPEYPNSPG 60
Query 61 TPAIAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRL 120
+P + +A + SL GH FWPDDV L+ S + +VTD +L+ALA GG+L
Sbjct 61 SPLPVMEIVAKLRSLPGHVFWPDDVSLVGSSDIIPSKILTSGQVTDTYLLALAKARGGKL 120
Query 121 VTFDAALADSA 131
TFD L+ +A
Sbjct 121 ATFDRKLSAAA 131
>gi|254232624|ref|ZP_04925951.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|124601683|gb|EAY60693.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
Length=141
Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/147 (46%), Positives = 87/147 (60%), Gaps = 20/147 (13%)
Query 3 ALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVSTTP 62
AL+DVN L+AL W +H+HHA + WFT ++ GWAT P+TEAG+VR+S+N V+ +
Sbjct 2 ALIDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGI 61
Query 63 AIAIAQLAAMTSLAGHTFWP-------DDVPLIVGSAGDRDAVSNHRRVTDCHLIALAAR 115
A A L A+ ++ GH F DDVPLIVG +R+VTD HL+ LA R
Sbjct 62 ADARPVLVALRAVGGHRFLADDVSLVDDDVPLIVG----------YRQVTDAHLLTLARR 111
Query 116 YGGRLVTFDAA---LADSASAGLVEVL 139
G RLVTFDA LA VE+L
Sbjct 112 RGVRLVTFDAGVFTLAQQRPKTPVELL 138
>gi|289758626|ref|ZP_06518004.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|294994398|ref|ZP_06800089.1| toxin [Mycobacterium tuberculosis 210]
gi|289714190|gb|EFD78202.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|326904108|gb|EGE51041.1| toxin [Mycobacterium tuberculosis W-148]
gi|339295377|gb|AEJ47488.1| hypothetical protein CCDC5079_2298 [Mycobacterium tuberculosis
CCDC5079]
gi|339298997|gb|AEJ51107.1| hypothetical protein CCDC5180_2270 [Mycobacterium tuberculosis
CCDC5180]
Length=141
Score = 103 bits (257), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/147 (47%), Positives = 86/147 (59%), Gaps = 20/147 (13%)
Query 3 ALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVSTTP 62
ALLDVN L+AL W +H+HHA + WFT ++ GWAT P+TEAG+VR S+N V+ +
Sbjct 2 ALLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRASTNPKVLPSAIGI 61
Query 63 AIAIAQLAAMTSLAGHTFWP-------DDVPLIVGSAGDRDAVSNHRRVTDCHLIALAAR 115
A A L A+ ++ GH F DDVPLIVG +R+VTD HL+ LA R
Sbjct 62 ADARRVLVALRAVGGHRFLADDVSLVDDDVPLIVG----------YRQVTDAHLLTLARR 111
Query 116 YGGRLVTFDAA---LADSASAGLVEVL 139
G RLVTFDA LA VE+L
Sbjct 112 RGVRLVTFDAGVFTLAQQRPKTPVELL 138
>gi|241518561|ref|YP_002979189.1| PIN domain protein family protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240862974|gb|ACS60638.1| PIN domain protein family protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length=147
Score = 103 bits (257), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 56/131 (43%), Positives = 74/131 (57%), Gaps = 0/131 (0%)
Query 1 VTALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVST 60
+T LLDVNVLIAL P HV H A WF + WAT PITE G +RI N
Sbjct 1 MTFLLDVNVLIALIDPGHVAHDDAHEWFAAIGQSAWATCPITENGVIRIVGNPQYPNSPG 60
Query 61 TPAIAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRL 120
+P++ + + + SL GH+FWPDDV L+ + +VTD +L+ALA GG+L
Sbjct 61 SPSLVMEIVRKLRSLPGHSFWPDDVSLVGSGDIAPAKILTSGQVTDTYLLALAKARGGQL 120
Query 121 VTFDAALADSA 131
TFD L+ +A
Sbjct 121 ATFDRKLSAAA 131
>gi|113953974|ref|YP_729372.1| hypothetical protein sync_0135 [Synechococcus sp. CC9311]
gi|113881325|gb|ABI46283.1| Mycobacterium tuberculosis PIN domain family subfamily [Synechococcus
sp. CC9311]
Length=148
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/137 (40%), Positives = 76/137 (56%), Gaps = 0/137 (0%)
Query 3 ALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVSTTP 62
ALLDVNVLIAL P HVHH + RWF +GWAT P+T+ +RI N P
Sbjct 6 ALLDVNVLIALIDPQHVHHEPSHRWFQAHGGDGWATCPLTQNALLRILGNPRYPNSPGGP 65
Query 63 AIAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRLVT 122
A+ ++ L + + H FWPD + + +A+ +H ++TD +L+ LA + GRLV+
Sbjct 66 AVVMSFLQELLAHPAHVFWPDALSWQATGVFEAEALLHHGQITDTYLLGLAVHHQGRLVS 125
Query 123 FDAALADSASAGLVEVL 139
FD L+ A G E L
Sbjct 126 FDRRLSLRAVRGGEEAL 142
>gi|254420497|ref|ZP_05034221.1| Mycobacterium tuberculosis PIN domain family [Brevundimonas sp.
BAL3]
gi|196186674|gb|EDX81650.1| Mycobacterium tuberculosis PIN domain family [Brevundimonas sp.
BAL3]
Length=145
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/131 (43%), Positives = 72/131 (55%), Gaps = 0/131 (0%)
Query 1 VTALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVST 60
+T LLDVNVLIAL P HV H A WF + ++ WAT PITE G VRI N
Sbjct 1 MTYLLDVNVLIALVDPRHVFHDTANGWFQREAAGSWATCPITENGLVRIVGNSRYRNPVG 60
Query 61 TPAIAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRL 120
P+ + L + +AGH FWPD + L D A++ ++TD +L+ALA GGRL
Sbjct 61 PPSEIVRILELLRDMAGHVFWPDAISLADDRLFDPSALTTPEQITDAYLLALAVSNGGRL 120
Query 121 VTFDAALADSA 131
T D L+ A
Sbjct 121 ATLDRRLSPDA 131
>gi|262201135|ref|YP_003272343.1| PIN domain-containing protein family protein [Gordonia bronchialis
DSM 43247]
gi|262084482|gb|ACY20450.1| PIN domain protein family protein [Gordonia bronchialis DSM 43247]
Length=144
Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/127 (46%), Positives = 74/127 (59%), Gaps = 3/127 (2%)
Query 4 LLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVSTTPA 63
LLD+NVL+AL W HVHH A F Q + W+T P+TEAG VR+ S + T A
Sbjct 7 LLDINVLVALSWDQHVHHGVAHERFAQLTE--WSTCPVTEAGLVRVLMTESAVGRVVTGA 64
Query 64 IAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRLVTF 123
A+ QLAA+ ++ G F DD L S D + R+VTD HL+ LAAR G +L TF
Sbjct 65 EALGQLAALRTVTGWGFLHDDASL-ADSVIDLRVLMGRRQVTDLHLVNLAARNGRKLATF 123
Query 124 DAALADS 130
DA L +S
Sbjct 124 DAGLRES 130
>gi|116624591|ref|YP_826747.1| PilT domain-containing protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116227753|gb|ABJ86462.1| PIN domain family protein [Candidatus Solibacter usitatus Ellin6076]
Length=147
Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/132 (43%), Positives = 74/132 (57%), Gaps = 0/132 (0%)
Query 3 ALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVSTTP 62
ALLDVNVLIAL P H+ H A RWF GWAT PIT G VRI S+ ++ +P
Sbjct 4 ALLDVNVLIALFDPAHIDHVEAHRWFGLNRKRGWATCPITINGCVRILSSPGYPGINASP 63
Query 63 AIAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRLVT 122
A A++ A + H FWPD V L+ + ++ H+ +TD +L+ LA R GRL T
Sbjct 64 AEITARMQASFANVDHHFWPDSVSLLDEALFRPSMITGHKNITDVYLLGLAVRNHGRLAT 123
Query 123 FDAALADSASAG 134
FD ++ A G
Sbjct 124 FDQSIPLKAVHG 135
>gi|134291479|ref|YP_001115248.1| PilT domain-containing protein [Burkholderia vietnamiensis G4]
gi|134134668|gb|ABO58993.1| PIN domain family protein [Burkholderia vietnamiensis G4]
Length=144
Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/127 (43%), Positives = 71/127 (56%), Gaps = 0/127 (0%)
Query 1 VTALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVST 60
+T LLDVNVLIAL P HV H A WF + + WAT P+TE G +RI N
Sbjct 2 ITYLLDVNVLIALLDPAHVQHEPAHAWFGRVGHSAWATCPLTENGVLRIIGNPKYPNTMV 61
Query 61 TPAIAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRL 120
+PA + + S AGHTFW DDV L+ D + + ++TD +L+ALA + G+L
Sbjct 62 SPASVAPLVVQLRSHAGHTFWSDDVSLLDEKHVDATRLLSSAQLTDTYLLALARAHKGKL 121
Query 121 VTFDAAL 127
TFD L
Sbjct 122 ATFDRRL 128
>gi|206601848|gb|EDZ38331.1| Hypothetical protein CGL2_11278040 [Leptospirillum sp. Group
II '5-way CG']
Length=142
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/135 (38%), Positives = 79/135 (59%), Gaps = 1/135 (0%)
Query 1 VTALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVST 60
+ +LLD+NVLIAL +HV H A+ WF+ +++GWA+ P+T+ G +RI S+ + +
Sbjct 1 MRSLLDINVLIALLDSDHVSHHTAREWFSLHATDGWASCPLTQNGCMRIMSHPNYPNPIS 60
Query 61 TPAIAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRL 120
I +L+ S + H FWPDDV + D + ++TD +L+ALA R+ GR
Sbjct 61 ISRIR-ERLSEAASSSLHQFWPDDVSFLDAGVADTARIHGPHQITDLYLLALAIRHKGRF 119
Query 121 VTFDAALADSASAGL 135
VTFD ++ SA G
Sbjct 120 VTFDGSIVTSAVQGF 134
>gi|304413692|ref|ZP_07395136.1| PIN domain-containing addiction module [Candidatus Regiella insecticola
LSR1]
gi|304283783|gb|EFL92177.1| PIN domain-containing addiction module [Candidatus Regiella insecticola
LSR1]
Length=147
Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/128 (41%), Positives = 69/128 (54%), Gaps = 1/128 (0%)
Query 4 LLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVSTTPA 63
LLDVNVLIAL P H+ H AA WF + WAT P+T+ G +RI + TPA
Sbjct 4 LLDVNVLIALVDPAHIQHDAAHTWFEK-QGQDWATCPLTQNGVLRIVGHGRYPNSPGTPA 62
Query 64 IAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRLVTF 123
+ + SL GH FWPDD+ L+ D + ++TD +L+ALA + G+L TF
Sbjct 63 AVAELMTTLCSLPGHCFWPDDISLLDTEKLDATRLLTSAQLTDSYLLALACAHNGQLATF 122
Query 124 DAALADSA 131
D L A
Sbjct 123 DRRLETDA 130
>gi|269954934|ref|YP_003324723.1| PIN domain-containing protein family protein [Xylanimonas cellulosilytica
DSM 15894]
gi|269303615|gb|ACZ29165.1| PIN domain protein family protein [Xylanimonas cellulosilytica
DSM 15894]
Length=141
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/130 (44%), Positives = 74/130 (57%), Gaps = 9/130 (6%)
Query 2 TALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVSTT 61
T L DVNVLIAL + +HVHH A W + +ATT +TEAG+VR+S N +++
Sbjct 3 TDLPDVNVLIALHFEDHVHHVPAMSWLRK--GGQFATTALTEAGFVRVSMNPAIV---GE 57
Query 62 PAIAIAQLAAMTSLAGH---TFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGG 118
P + L A+ L GH TFW DD L DR +S H++ TD HL+ LAA G
Sbjct 58 PFSGVEALEALRRLRGHTRATFWADDTSLATSPFADR-VLSGHKQTTDLHLLNLAASRDG 116
Query 119 RLVTFDAALA 128
LVTFD+ L
Sbjct 117 VLVTFDSKLG 126
>gi|344199817|ref|YP_004784143.1| PIN domain-containing protein family protein [Acidithiobacillus
ferrivorans SS3]
gi|343775261|gb|AEM47817.1| PIN domain protein family protein [Acidithiobacillus ferrivorans
SS3]
Length=142
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/131 (40%), Positives = 69/131 (53%), Gaps = 0/131 (0%)
Query 1 VTALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVST 60
+T LLDVNVLIAL P HV H A WF WAT P+TE G +RI +
Sbjct 1 MTFLLDVNVLIALIDPMHVQHDMAHEWFAAHGQPAWATCPLTENGVLRIVGHPRYPNSPG 60
Query 61 TPAIAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRL 120
TPA + + + GH FWPDD+ L+ D + ++TD +L+ALA + G+L
Sbjct 61 TPAAVAPLIQGLRASPGHVFWPDDISLLDVDHIDASRLLTSGQITDSYLLALACAHEGQL 120
Query 121 VTFDAALADSA 131
TFD L +A
Sbjct 121 ATFDHRLVTNA 131
>gi|330818818|ref|YP_004351035.1| PilT domain-containing protein [Burkholderia gladioli BSR3]
gi|327374360|gb|AEA65712.1| PilT domain-containing protein [Burkholderia gladioli BSR3]
Length=151
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/127 (43%), Positives = 69/127 (55%), Gaps = 0/127 (0%)
Query 1 VTALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVST 60
+T LLDVNVLIAL HV H AA WF + WAT P+TE G +RI N
Sbjct 9 MTYLLDVNVLIALLDAGHVQHEAAHEWFGSAAHAAWATCPLTENGVLRIIGNPRYPNTLG 68
Query 61 TPAIAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRL 120
TPA + + + GHTFW DD+ L+ D + +VTD +L+ALA +GG+L
Sbjct 69 TPAAVAPLVTQLRAHPGHTFWWDDLSLLNPEQVDVSRILATDQVTDTYLLALARVHGGKL 128
Query 121 VTFDAAL 127
TFD L
Sbjct 129 ATFDRRL 135
>gi|336115788|ref|YP_004570554.1| hypothetical protein MLP_01370 [Microlunatus phosphovorus NM-1]
gi|334683566|dbj|BAK33151.1| hypothetical protein MLP_01370 [Microlunatus phosphovorus NM-1]
Length=139
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/127 (43%), Positives = 68/127 (54%), Gaps = 3/127 (2%)
Query 4 LLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVSTTPA 63
LLDVNVL+AL W HVHH A + F + + W T P TEAG VR+ V+ +
Sbjct 2 LLDVNVLLALSWDQHVHHEIAHQRFAELDT--WNTCPTTEAGLVRLLLTEQVVGRKVIGS 59
Query 64 IAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRLVTF 123
A+ QLAAM ++G F PD L D + R+VTD L+ LAA +L TF
Sbjct 60 EALGQLAAMRGVSGWGFLPDSGSL-AEPVIDTRVLMGRRQVTDLQLVNLAASNNTKLATF 118
Query 124 DAALADS 130
DA L DS
Sbjct 119 DAGLRDS 125
>gi|121595342|ref|YP_987238.1| PilT domain-containing protein [Acidovorax sp. JS42]
gi|120607422|gb|ABM43162.1| PIN domain family protein [Acidovorax sp. JS42]
Length=142
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/135 (40%), Positives = 75/135 (56%), Gaps = 3/135 (2%)
Query 1 VTALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVST 60
+ ALLDVNVLIAL H+HH A +W Q +GWA+ P+T+ G +RI + + Q
Sbjct 1 MRALLDVNVLIALLDAAHIHHQRASQWLEQSLHHGWASCPLTQNGCLRIMAQPAYPQ--A 58
Query 61 TPAIAIAQ-LAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGR 119
P A+AQ L + H F DD L+ + + HR+VTD +L+ LA R+G R
Sbjct 59 LPLAAVAQRLGQAAATPAHLFIADDYSLLDADSLHWPQLLGHRQVTDAYLLGLAVRHGCR 118
Query 120 LVTFDAALADSASAG 134
V+FDA + +A G
Sbjct 119 FVSFDARVNLAAVPG 133
>gi|340628304|ref|YP_004746756.1| hypothetical protein MCAN_33461 [Mycobacterium canettii CIPT
140010059]
gi|340006494|emb|CCC45677.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=142
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/133 (43%), Positives = 75/133 (57%), Gaps = 3/133 (2%)
Query 3 ALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVR-ISSNRSVMQVSTT 61
ALLDVNVL+AL +HV H A+ W T GWA+ IT+ G+VR IS R +S
Sbjct 3 ALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPISVA 62
Query 62 PAIAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRLV 121
AI + LA T H FW V ++ DR + + ++VTD +L+ALA + GR V
Sbjct 63 HAIDL--LARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFV 120
Query 122 TFDAALADSASAG 134
TFD A+A +A G
Sbjct 121 TFDQAIALTAVPG 133
>gi|15610456|ref|NP_217837.1| hypothetical protein Rv3320c [Mycobacterium tuberculosis H37Rv]
gi|15842912|ref|NP_337949.1| hypothetical protein MT3421 [Mycobacterium tuberculosis CDC1551]
gi|31794501|ref|NP_856994.1| hypothetical protein Mb3349c [Mycobacterium bovis AF2122/97]
77 more sequence titles
Length=142
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/133 (42%), Positives = 75/133 (57%), Gaps = 3/133 (2%)
Query 3 ALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVR-ISSNRSVMQVSTT 61
ALLDVNVL+AL +HV H A+ W T GWA+ IT+ G+VR IS R +S
Sbjct 3 ALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPISVA 62
Query 62 PAIAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRLV 121
AI + LA T H FW V ++ DR + + ++VTD +L+ALA + GR V
Sbjct 63 HAIDL--LARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFV 120
Query 122 TFDAALADSASAG 134
TFD ++A +A G
Sbjct 121 TFDQSIALTAVPG 133
>gi|326772971|ref|ZP_08232255.1| toxin-antitoxin system, toxin component, PIN family [Actinomyces
viscosus C505]
gi|326637603|gb|EGE38505.1| toxin-antitoxin system, toxin component, PIN family [Actinomyces
viscosus C505]
Length=146
Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 64/125 (52%), Gaps = 3/125 (2%)
Query 4 LLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVSTTPA 63
LLDVNVL+AL PNH HH WF + WAT IT+A Y+R+ N V A
Sbjct 9 LLDVNVLVALSLPNHAHHEVVSAWFD--GVDQWATCSITQAAYLRLLMNPRVTGFEIAAA 66
Query 64 IAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRLVTF 123
++ L +TSL H F DD P S + ++VTD HL+ LAAR+ L T
Sbjct 67 DVLSGLGGLTSLDDHVFLVDDAPPAEPSIS-FSRLKGPKQVTDLHLVDLAARHNAVLATM 125
Query 124 DAALA 128
D +A
Sbjct 126 DGRMA 130
>gi|289747139|ref|ZP_06506517.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289687667|gb|EFD55155.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
Length=202
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/129 (42%), Positives = 73/129 (57%), Gaps = 3/129 (2%)
Query 1 VTALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVR-ISSNRSVMQVS 59
+ ALLDVNVL+AL +HV H A+ W T GWA+ IT+ G+VR IS R +S
Sbjct 1 MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPIS 60
Query 60 TTPAIAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGR 119
AI + LA T H FW V ++ DR + + ++VTD +L+ALA + GR
Sbjct 61 VAHAIDL--LARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGR 118
Query 120 LVTFDAALA 128
VTFD ++A
Sbjct 119 FVTFDQSIA 127
>gi|24214369|ref|NP_711850.1| hypothetical protein LA_1669 [Leptospira interrogans serovar
Lai str. 56601]
gi|24195304|gb|AAN48868.1| hypothetical protein LA_1669 [Leptospira interrogans serovar
Lai str. 56601]
Length=144
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/133 (39%), Positives = 75/133 (57%), Gaps = 3/133 (2%)
Query 4 LLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVSTTPA 63
LLDVNVLI+L NHV H A +WF + + NGWAT PIT+ VRI S+ S
Sbjct 4 LLDVNVLISLCDSNHVFHEKAWKWFDRKAKNGWATCPITQNALVRIMSHSSYPGNPGGVE 63
Query 64 IAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVS-NHRRVTDCHLIALAARYGGRLVT 122
+ A L ++ + GH F PD++ I S + VS + +++TD +L+AL+ + + T
Sbjct 64 VVSAILHSLLKVKGHQFIPDNIS-INSSLFYLNIVSVSSKQITDVYLLALSVHHKVKFAT 122
Query 123 FDAALA-DSASAG 134
FD+ + DS G
Sbjct 123 FDSKIPYDSVDRG 135
>gi|336120816|ref|YP_004575602.1| hypothetical protein MLP_51850 [Microlunatus phosphovorus NM-1]
gi|334688614|dbj|BAK38199.1| hypothetical protein MLP_51850 [Microlunatus phosphovorus NM-1]
Length=148
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/125 (43%), Positives = 75/125 (60%), Gaps = 3/125 (2%)
Query 4 LLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVSTTPA 63
L DVN+L+AL P HVHH AQ WFT S +ATTPITE+G++R++ N +V T+
Sbjct 13 LPDVNLLVALLHPAHVHHLQAQAWFT--SVERFATTPITESGFIRMALNPAVAGQVTSLD 70
Query 64 IAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRLVTF 123
A++ L ++ + + DD L + + D + R+VTD HL+ LAA + RLVTF
Sbjct 71 DAMSSLNSVRADKRVEYVADDTSLALPTI-DLVGLVGFRQVTDFHLVNLAACHSARLVTF 129
Query 124 DAALA 128
D LA
Sbjct 130 DRKLA 134
>gi|45657964|ref|YP_002050.1| hypothetical protein LIC12116 [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|45601205|gb|AAS70687.1| conserved hypothetical protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length=144
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/133 (39%), Positives = 75/133 (57%), Gaps = 3/133 (2%)
Query 4 LLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVSTTPA 63
LLDVNVLI+L NHV H A +WF + + NGWAT PIT+ VRI S+ S
Sbjct 4 LLDVNVLISLCDSNHVFHEKAWKWFDRKARNGWATCPITQNALVRIMSHSSYPGNPGGVE 63
Query 64 IAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVS-NHRRVTDCHLIALAARYGGRLVT 122
+ A L ++ + GH F PD++ I S + VS + +++TD +L+AL+ + + T
Sbjct 64 VVSAILHSLLKVKGHQFIPDNIS-INSSLFYLNIVSVSSKQITDVYLLALSVHHKVKFAT 122
Query 123 FDAALA-DSASAG 134
FD+ + DS G
Sbjct 123 FDSKIPYDSVDRG 135
>gi|317967919|ref|ZP_07969309.1| hypothetical protein SCB02_00127 [Synechococcus sp. CB0205]
Length=144
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/139 (36%), Positives = 73/139 (53%), Gaps = 2/139 (1%)
Query 2 TALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSN-RSVMQVST 60
TALLDVNVLIAL P+HVHH WF + WA+ +T+ +RI N R +
Sbjct 5 TALLDVNVLIALLDPHHVHHELCHGWFADRGAAPWASCAMTQNAVLRILGNPRYPISPGP 64
Query 61 TPAIAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRL 120
P IA L ++ GH FW + L+ R A+ ++ ++TD +L+ALA +GG L
Sbjct 65 PPTIA-PHLDSLVEHPGHEFWDSNPSLLSQGFIARSALIDYAQITDLYLLALARHHGGTL 123
Query 121 VTFDAALADSASAGLVEVL 139
T D + S +E++
Sbjct 124 ATLDKRIKVDGSQDALELI 142
>gi|340358885|ref|ZP_08681388.1| PIN family toxin-antitoxin system [Actinomyces sp. oral taxon
448 str. F0400]
gi|339885631|gb|EGQ75340.1| PIN family toxin-antitoxin system [Actinomyces sp. oral taxon
448 str. F0400]
Length=148
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/125 (40%), Positives = 60/125 (48%), Gaps = 3/125 (2%)
Query 1 VTALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVST 60
V LLDVNV++AL NH HH A WF WAT PITE+ Y R+ N V
Sbjct 7 VLRLLDVNVMLALSLANHAHHRVATSWFEDV--GAWATCPITESAYCRLLLNSHVTGFEL 64
Query 61 TPAIAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRL 120
+ L S++GH D L A D + R++TD HL+ LAAR G L
Sbjct 65 GVSEVFDALRTFCSVSGHELIEDSASL-TAPAIDVSGLVGRRQITDFHLVDLAARSGALL 123
Query 121 VTFDA 125
T DA
Sbjct 124 ATLDA 128
>gi|114331350|ref|YP_747572.1| PilT domain-containing protein [Nitrosomonas eutropha C91]
gi|114308364|gb|ABI59607.1| PIN domain family protein [Nitrosomonas eutropha C91]
Length=142
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/134 (36%), Positives = 73/134 (55%), Gaps = 1/134 (0%)
Query 1 VTALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVST 60
+ ALLDVNVLIAL HVHH A +W Q +GWA+ P+T+ G +RI + + + +
Sbjct 1 MRALLDVNVLIALLDAGHVHHVRASQWLEQEIIHGWASCPLTQNGCLRIMTQPAYPEALS 60
Query 61 TPAIAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRL 120
A+A ++LA + H F DD L+ + + H ++ D +L+ LA R+ R
Sbjct 61 LAAVA-SRLAQAIAHPTHAFVADDYSLLDAEQVNWQQMLGHWQIIDSYLLGLAVRHHCRF 119
Query 121 VTFDAALADSASAG 134
V+FD+ L +G
Sbjct 120 VSFDSRLNPDIVSG 133
>gi|240169388|ref|ZP_04748047.1| hypothetical protein MkanA1_08748 [Mycobacterium kansasii ATCC
12478]
Length=133
Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/126 (41%), Positives = 64/126 (51%), Gaps = 9/126 (7%)
Query 3 ALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVSTTP 62
ALLD NVLIAL HVHH A W + NG+AT PIT+ VR +M+
Sbjct 3 ALLDSNVLIALVVAEHVHHDVAAAWLSA-RDNGFATCPITQGSLVRF-----LMRTGQPA 56
Query 63 AIAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRLVT 122
A+A + A+ + H FWPD V G V HR+VTD +L LA G+L T
Sbjct 57 AVAREVVGAVETAKRHEFWPDSVSFADVEIG---GVVGHRQVTDAYLAQLARSRNGQLAT 113
Query 123 FDAALA 128
D+ LA
Sbjct 114 LDSGLA 119
>gi|256826277|ref|YP_003150237.1| nucleic acid-binding protein [Kytococcus sedentarius DSM 20547]
gi|256689670|gb|ACV07472.1| predicted nucleic acid-binding protein, contains PIN domain [Kytococcus
sedentarius DSM 20547]
Length=147
Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/124 (41%), Positives = 64/124 (52%), Gaps = 2/124 (1%)
Query 1 VTALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVST 60
V ALLDVN LIAL +H H AA RW + SNGWAT T+ G++R+ S T
Sbjct 7 VAALLDVNTLIALLDIDHRDHEAAHRWAEERLSNGWATCATTQMGFLRVISQPGYPSPIT 66
Query 61 TPAIAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRL 120
A L T H +W + GS D ++ HR++TD +L+ALA G L
Sbjct 67 VDE-AGRLLRRATDHPSHEYWSSEPQPCAGSVS-LDVITGHRQITDAYLLALAVHQNGCL 124
Query 121 VTFD 124
VTFD
Sbjct 125 VTFD 128
>gi|336179654|ref|YP_004585029.1| PIN domain-containing protein family protein [Frankia symbiont
of Datisca glomerata]
gi|334860634|gb|AEH11108.1| PIN domain protein family protein [Frankia symbiont of Datisca
glomerata]
Length=131
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/125 (40%), Positives = 69/125 (56%), Gaps = 9/125 (7%)
Query 4 LLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVSTTPA 63
LLD NVLI L +HVHH AA+ W ++ +AT PITE VR+ +++ +
Sbjct 4 LLDANVLITLIVTDHVHHDAAEAWLAG-TAGRFATCPITEGSLVRL-----LIREGQSAQ 57
Query 64 IAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRLVTF 123
A A ++A+ + H FWPD+V SA V HR+VTD +L LA + GRL +F
Sbjct 58 TATAVVSAIAGDSRHEFWPDEVSY---SAVSMTGVIGHRQVTDAYLAYLARTHNGRLASF 114
Query 124 DAALA 128
+ LA
Sbjct 115 NQGLA 119
>gi|15607757|ref|NP_215131.1| hypothetical protein Rv0617 [Mycobacterium tuberculosis H37Rv]
gi|15840020|ref|NP_335057.1| hypothetical protein MT0646 [Mycobacterium tuberculosis CDC1551]
gi|31791800|ref|NP_854293.1| hypothetical protein Mb0634 [Mycobacterium bovis AF2122/97]
79 more sequence titles
Length=133
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/129 (40%), Positives = 69/129 (54%), Gaps = 11/129 (8%)
Query 1 VTALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVST 60
+T LLD NVLIAL HVHH AA W S G+AT P+T+ VR +++
Sbjct 1 MTVLLDANVLIALVVAEHVHHDAAADWLMA-SDTGFATCPMTQGSLVRF-----LVRSGQ 54
Query 61 TPAIAIAQLAAMTSLAGHTFWPDDVPLI-VGSAGDRDAVSNHRRVTDCHLIALAARYGGR 119
+ A A ++A+ + H FWPD + V AG V HR+VTD +L LA + G+
Sbjct 55 SAAAARDVVSAVQCTSRHEFWPDALSFAGVEVAG----VVGHRQVTDAYLAQLARSHDGQ 110
Query 120 LVTFDAALA 128
L T D+ LA
Sbjct 111 LATLDSGLA 119
>gi|87123276|ref|ZP_01079127.1| hypothetical protein RS9917_05435 [Synechococcus sp. RS9917]
gi|86168996|gb|EAQ70252.1| hypothetical protein RS9917_05435 [Synechococcus sp. RS9917]
Length=143
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/124 (35%), Positives = 66/124 (54%), Gaps = 1/124 (0%)
Query 1 VTALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVST 60
+ ALLD+NV+IAL H H+ A +W + ++ GWA+ PI++ G +RI S S
Sbjct 1 MRALLDINVIIALLDGQHSLHSTASQWLSHHAAAGWASCPISQNGVIRIMSQPSYPNAQP 60
Query 61 TPAIAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRL 120
AIA ++LA H FW + L+ + R++TD +L+A+A G L
Sbjct 61 PAAIA-SRLAEACRHPSHQFWGGALSLLDPRHLKWHCLLGPRQITDAYLLAVAVANDGCL 119
Query 121 VTFD 124
V+FD
Sbjct 120 VSFD 123
>gi|324997204|ref|ZP_08118316.1| toxin [Pseudonocardia sp. P1]
Length=141
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/128 (37%), Positives = 60/128 (47%), Gaps = 11/128 (8%)
Query 2 TALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVSTT 61
T LLD NVLIAL H HH A W + +A P+ E VR +++ T
Sbjct 3 TYLLDANVLIALTVTEHEHHDRASAWGARIER--FALCPVVEGALVRF-----LVRAGET 55
Query 62 PAIAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIAL-AARYGGRL 120
P+ A L A+ +L G FWPD + G V HR+VTD +L +L AA G
Sbjct 56 PSTATGLLRAVHALPGCEFWPDSLSFADARLGH---VGGHRQVTDAYLTSLVAAVPGASP 112
Query 121 VTFDAALA 128
T D LA
Sbjct 113 ATLDEGLA 120
>gi|320109069|ref|YP_004184659.1| PIN domain-containing protein family protein [Terriglobus saanensis
SP1PR4]
gi|319927590|gb|ADV84665.1| PIN domain protein family protein [Terriglobus saanensis SP1PR4]
Length=147
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/124 (34%), Positives = 61/124 (50%), Gaps = 3/124 (2%)
Query 4 LLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVSTTPA 63
LLDVNV +AL +H HH WF S WA P TEAG++R ++ Q++ T A
Sbjct 9 LLDVNVFVALLSEDHTHHQLVTAWFNT-PSLLWAICPFTEAGFLRNATAPRPGQITMTEA 67
Query 64 IAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRLVTF 123
A+ LA M + G+ + P + + ++VTD +L+ LA R LVT
Sbjct 68 TAV--LARMAQVPGYHYLPITADWRSLCSPFSTRLYGTKQVTDAYLLGLAVREDLVLVTM 125
Query 124 DAAL 127
D +
Sbjct 126 DKGI 129
>gi|16264146|ref|NP_436938.1| hypothetical protein SM_b20412 [Sinorhizobium meliloti 1021]
gi|15140271|emb|CAC48798.1| CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti 1021]
Length=54
Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/52 (54%), Positives = 32/52 (62%), Gaps = 0/52 (0%)
Query 1 VTALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSN 52
+T LLDVNVLIAL P+H+ H A WF WAT PITE G +RI N
Sbjct 1 MTFLLDVNVLIALIDPSHIGHDDAHEWFASIGQTAWATCPITENGVIRIVGN 52
>gi|320108460|ref|YP_004184050.1| PIN domain-containing protein family protein [Terriglobus saanensis
SP1PR4]
gi|319926981|gb|ADV84056.1| PIN domain protein family protein [Terriglobus saanensis SP1PR4]
Length=142
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/134 (33%), Positives = 63/134 (48%), Gaps = 4/134 (2%)
Query 6 DVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQV---STTP 62
DVNV +AL H H AQ W+ S +T+ G++RI +N++ MQ +
Sbjct 8 DVNVWLALTGETHEHSRPAQIWYGTLISETLLFCRMTQLGFLRILTNKTAMQADVKTNLQ 67
Query 63 AIAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRLVT 122
A+ I Q T A + PD++ S A S+ + D +L A A G RLVT
Sbjct 68 ALRIYQQWIQTDGARYREEPDNMEAAFASIASTTA-SSPKLWNDAYLSAFAVTAGLRLVT 126
Query 123 FDAALADSASAGLV 136
FD ALA S ++
Sbjct 127 FDRALARRTSGSIL 140
>gi|218459869|ref|ZP_03499960.1| hypothetical protein RetlK5_10369 [Rhizobium etli Kim 5]
Length=100
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/73 (42%), Positives = 45/73 (62%), Gaps = 4/73 (5%)
Query 61 TPAIAIAQLAAMTSLAGHTFWPDDVPLIVGSAGD--RDAVSNHRRVTDCHLIALAARYGG 118
+PA+ + + + SL GH+FWPDDV L+ +GD + +VTD +L+ALA GG
Sbjct 14 SPALVMEIVRKLRSLPGHSFWPDDVSLV--GSGDIAPTKILTPGQVTDTYLLALAKARGG 71
Query 119 RLVTFDAALADSA 131
+L TFD L+ +A
Sbjct 72 QLATFDRKLSAAA 84
>gi|16264145|ref|NP_436937.1| hypothetical protein SM_b20411 [Sinorhizobium meliloti 1021]
gi|15140270|emb|CAC48797.1| CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti 1021]
Length=82
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/63 (45%), Positives = 38/63 (61%), Gaps = 0/63 (0%)
Query 69 LAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRLVTFDAALA 128
+A + SL GH FWPDDV L+ S + +VTD +L+ALA GG+L TFD L+
Sbjct 4 VAKLRSLPGHVFWPDDVSLVGSSDIIPSKILTSGQVTDTYLLALAKARGGKLATFDRKLS 63
Query 129 DSA 131
+A
Sbjct 64 AAA 66
>gi|124515583|gb|EAY57093.1| conserved hypothetical protein [Leptospirillum rubarum]
Length=193
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/114 (30%), Positives = 58/114 (51%), Gaps = 3/114 (2%)
Query 3 ALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVSTTP 62
+LLD+NVLI L +HV H+A++ + +++GW++ P+T+ G + I S T P
Sbjct 71 SLLDINVLIVLLDSDHVFHSASREGLSLHATDGWSSCPLTDNGCMCIMS--CPNDPDTIP 128
Query 63 AIAIA-QLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAAR 115
I +L+ S H FWP+DV + R++TD ++ + R
Sbjct 129 VSRIRDRLSEAASGPPHQFWPEDVHFLDAGVAVASRTHGPRQITDLSWLSPSGR 182
>gi|190895067|ref|YP_001985360.1| hypothetical protein RHECIAT_PC0000733 [Rhizobium etli CIAT 652]
gi|190700728|gb|ACE94810.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
Length=82
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/62 (46%), Positives = 40/62 (65%), Gaps = 4/62 (6%)
Query 72 MTSLAGHTFWPDDVPLIVGSAGD--RDAVSNHRRVTDCHLIALAARYGGRLVTFDAALAD 129
+ SL GH+FWPDDV L+ +GD + +VTD +L+ALA +GG+L TFD L+
Sbjct 7 LRSLPGHSFWPDDVSLV--GSGDIAPTKILTSGQVTDTYLLALAKAHGGQLATFDRKLSA 64
Query 130 SA 131
+A
Sbjct 65 AA 66
>gi|227876599|ref|ZP_03994709.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
gi|227842800|gb|EEJ52999.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
Length=130
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/125 (30%), Positives = 53/125 (43%), Gaps = 10/125 (8%)
Query 4 LLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVSTTPA 63
L+D N LIA H HH RWF Q ++ T PITE R +++ +
Sbjct 5 LIDANALIAFNISTHQHHDVVLRWFAQ--ADTVLTCPITEGALFRF-----IIRNHFDFS 57
Query 64 IAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRLVTF 123
+A L ++ PDD+ + V R+VTD +L LA + L TF
Sbjct 58 VACQLLTDFCAIPKVQRIPDDLHY---DDANWTGVRGFRQVTDVYLAELALHHDALLATF 114
Query 124 DAALA 128
D +A
Sbjct 115 DQGIA 119
>gi|33865109|ref|NP_896668.1| hypothetical protein SYNW0573 [Synechococcus sp. WH 8102]
gi|33638793|emb|CAE07088.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
Length=144
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/140 (32%), Positives = 61/140 (44%), Gaps = 2/140 (1%)
Query 1 VTALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVM-QVS 59
+ L D+NV +AL PNH HH++A +++ + +S T G VR+ VM +
Sbjct 4 IADLPDLNVWLALASPNHKHHSSAVQYWEKQASQQVLFCTTTALGLVRLVMQPKVMGGAA 63
Query 60 TTPAIAIAQLAAMTSLAGHTF-WPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGG 118
PA A A L G + P V R A R TD HL ALA
Sbjct 64 LMPADASALLETFLQQPGVSHAQPTSDGWDVFHLLMRQADLTPRLCTDAHLAALAITNQW 123
Query 119 RLVTFDAALADSASAGLVEV 138
RLV+FD + L+E+
Sbjct 124 RLVSFDQDFQLFSGLNLLEL 143
>gi|332797202|ref|YP_004458702.1| VapC-type toxin [Acidianus hospitalis W1]
gi|332694937|gb|AEE94404.1| VapC-type toxin [Acidianus hospitalis W1]
Length=122
Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/131 (23%), Positives = 57/131 (44%), Gaps = 17/131 (12%)
Query 1 VTALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSN---RSVMQ 57
+ A++D N +IA+ + +HV+H A + + + ITE Y I N + +
Sbjct 1 MEAVVDTNFIIAVMFKDHVNHDEAIKEWEKLDKVYLPLISITEIAYFLIKHNIDLNVLNE 60
Query 58 VSTTPAIAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYG 117
+ + P I I + + V I + G +D + ++ D ++++A R
Sbjct 61 ILSDPKIEIIE--------------NSVEDISYALGKKDEIKSYDDFNDFLILSVAIRQN 106
Query 118 GRLVTFDAALA 128
L+TFD L
Sbjct 107 LPLLTFDKKLK 117
>gi|254430307|ref|ZP_05044010.1| hypothetical protein CPCC7001_197 [Cyanobium sp. PCC 7001]
gi|197624760|gb|EDY37319.1| hypothetical protein CPCC7001_197 [Cyanobium sp. PCC 7001]
Length=144
Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/136 (30%), Positives = 56/136 (42%), Gaps = 28/136 (20%)
Query 4 LLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVM------- 56
L D+NV +AL H+HH A ++ Q ++ +T G VR+ S +M
Sbjct 7 LPDLNVWLALASSQHIHHRQALHYWEQLAAEQVLFCTVTALGLVRLVSQPRLMGDAVKNA 66
Query 57 --------QVSTTPAIAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCH 108
P +A+A A H W DV + G+ R TD H
Sbjct 67 AEASELLAAFCRQPGVALAP-------AEHDGW--DVFHRLMRKGELPP----RLCTDAH 113
Query 109 LIALAARYGGRLVTFD 124
L ALA +G RLV+FD
Sbjct 114 LAALAMTHGWRLVSFD 129
Lambda K H
0.321 0.130 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 131443546824
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40