BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2533c Length=156 Score E Sequences producing significant alignments: (Bits) Value gi|15609670|ref|NP_217049.1| transcription antitermination prote... 304 3e-81 gi|308371048|ref|ZP_07667079.1| putative transcription antitermi... 301 2e-80 gi|31793715|ref|NP_856208.1| transcription antitermination prote... 301 2e-80 gi|15842067|ref|NP_337104.1| transcription antitermination prote... 283 8e-75 gi|339295413|gb|AEJ47524.1| putative transcription antiterminati... 269 1e-70 gi|306807668|ref|ZP_07444336.1| putative transcription antitermi... 266 6e-70 gi|41407196|ref|NP_960032.1| transcription antitermination prote... 250 6e-65 gi|240170738|ref|ZP_04749397.1| transcription antitermination pr... 249 7e-65 gi|342858646|ref|ZP_08715301.1| transcription antitermination pr... 246 1e-63 gi|108799326|ref|YP_639523.1| transcription antitermination prot... 246 1e-63 gi|118470676|ref|YP_887353.1| transcription antitermination prot... 245 2e-63 gi|120403637|ref|YP_953466.1| transcription antitermination prot... 243 8e-63 gi|254821798|ref|ZP_05226799.1| transcription antitermination pr... 237 4e-61 gi|183982195|ref|YP_001850486.1| N utilization substance protein... 236 1e-60 gi|118617385|ref|YP_905717.1| transcription antitermination prot... 234 4e-60 gi|296170770|ref|ZP_06852342.1| N utilization substance protein ... 233 8e-60 gi|145224333|ref|YP_001135011.1| transcription antitermination p... 231 2e-59 gi|333990968|ref|YP_004523582.1| N utilization substance protein... 230 4e-59 gi|15827185|ref|NP_301448.1| transcription antitermination prote... 221 2e-56 gi|169629920|ref|YP_001703569.1| transcription antitermination p... 204 4e-51 gi|312139563|ref|YP_004006899.1| transcriptional antiterminator ... 175 2e-42 gi|111024096|ref|YP_707068.1| transcription antitermination prot... 171 4e-41 gi|226306485|ref|YP_002766445.1| transcription antitermination p... 166 8e-40 gi|54025601|ref|YP_119843.1| transcription antitermination prote... 166 9e-40 gi|229493670|ref|ZP_04387455.1| transcription antitermination fa... 166 1e-39 gi|226366336|ref|YP_002784119.1| transcription antitermination p... 166 1e-39 gi|333919520|ref|YP_004493101.1| N utilization substance protein... 165 2e-39 gi|343924546|ref|ZP_08764094.1| N utilization substance protein ... 157 4e-37 gi|326382154|ref|ZP_08203846.1| transcription antitermination pr... 157 5e-37 gi|296140288|ref|YP_003647531.1| NusB antitermination factor [Ts... 149 2e-34 gi|256379255|ref|YP_003102915.1| NusB antitermination factor [Ac... 147 6e-34 gi|317505974|ref|ZP_07963806.1| transcription antitermination fa... 141 3e-32 gi|296394716|ref|YP_003659600.1| NusB antitermination factor [Se... 139 1e-31 gi|262202262|ref|YP_003273470.1| transcription antitermination f... 139 2e-31 gi|258654403|ref|YP_003203559.1| NusB antitermination factor [Na... 136 9e-31 gi|256832560|ref|YP_003161287.1| NusB antitermination factor [Jo... 135 3e-30 gi|72161498|ref|YP_289155.1| transcription antitermination prote... 133 9e-30 gi|300784648|ref|YP_003764939.1| transcription antiterminator Nu... 133 9e-30 gi|324998653|ref|ZP_08119765.1| NusB antitermination factor [Pse... 132 1e-29 gi|296129685|ref|YP_003636935.1| NusB antitermination factor [Ce... 132 2e-29 gi|116670816|ref|YP_831749.1| NusB antitermination factor [Arthr... 131 3e-29 gi|119716645|ref|YP_923610.1| transcription antitermination fact... 131 4e-29 gi|296269370|ref|YP_003652002.1| NusB antitermination factor [Th... 130 5e-29 gi|256391589|ref|YP_003113153.1| NusB antitermination factor [Ca... 130 5e-29 gi|302525862|ref|ZP_07278204.1| transcription antitermination fa... 129 1e-28 gi|297155776|gb|ADI05488.1| transcription antitermination protei... 129 1e-28 gi|284991570|ref|YP_003410124.1| NusB antitermination factor [Ge... 129 1e-28 gi|239917765|ref|YP_002957323.1| transcription antitermination f... 129 2e-28 gi|257055582|ref|YP_003133414.1| transcription antitermination f... 128 3e-28 gi|134098647|ref|YP_001104308.1| NusB antitermination factor [Sa... 127 4e-28 >gi|15609670|ref|NP_217049.1| transcription antitermination protein NusB [Mycobacterium tuberculosis H37Rv] gi|148662371|ref|YP_001283894.1| transcription antitermination protein NusB [Mycobacterium tuberculosis H37Ra] gi|148823728|ref|YP_001288482.1| transcription antitermination protein NusB [Mycobacterium tuberculosis F11] 39 more sequence titles Length=156 Score = 304 bits (778), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 156/156 (100%), Positives = 156/156 (100%), Gaps = 0/156 (0%) Query 1 MSDRKPVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVAR 60 MSDRKPVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVAR Sbjct 1 MSDRKPVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVAR 60 Query 61 GVSEHAAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAK 120 GVSEHAAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAK Sbjct 61 GVSEHAAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAK 120 Query 121 ELSTDDSPGFVNGVLGQVMLVTPQLRAAAQAVRGGA 156 ELSTDDSPGFVNGVLGQVMLVTPQLRAAAQAVRGGA Sbjct 121 ELSTDDSPGFVNGVLGQVMLVTPQLRAAAQAVRGGA 156 >gi|308371048|ref|ZP_07667079.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu003] gi|308373441|ref|ZP_07667582.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu005] gi|308377044|ref|ZP_07668414.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu008] 7 more sequence titles Length=249 Score = 301 bits (772), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 155/155 (100%), Positives = 155/155 (100%), Gaps = 0/155 (0%) Query 1 MSDRKPVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVAR 60 MSDRKPVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVAR Sbjct 1 MSDRKPVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVAR 60 Query 61 GVSEHAAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAK 120 GVSEHAAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAK Sbjct 61 GVSEHAAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAK 120 Query 121 ELSTDDSPGFVNGVLGQVMLVTPQLRAAAQAVRGG 155 ELSTDDSPGFVNGVLGQVMLVTPQLRAAAQAVRGG Sbjct 121 ELSTDDSPGFVNGVLGQVMLVTPQLRAAAQAVRGG 155 >gi|31793715|ref|NP_856208.1| transcription antitermination protein NusB [Mycobacterium bovis AF2122/97] gi|121638417|ref|YP_978641.1| transcription antitermination protein NusB [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224990911|ref|YP_002645598.1| transcription antitermination protein [Mycobacterium bovis BCG str. Tokyo 172] 23 more sequence titles Length=156 Score = 301 bits (772), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 155/156 (99%), Positives = 155/156 (99%), Gaps = 0/156 (0%) Query 1 MSDRKPVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVAR 60 MSDRKPVRGRHQARKRAV LLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVAR Sbjct 1 MSDRKPVRGRHQARKRAVDLLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVAR 60 Query 61 GVSEHAAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAK 120 GVSEHAAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAK Sbjct 61 GVSEHAAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAK 120 Query 121 ELSTDDSPGFVNGVLGQVMLVTPQLRAAAQAVRGGA 156 ELSTDDSPGFVNGVLGQVMLVTPQLRAAAQAVRGGA Sbjct 121 ELSTDDSPGFVNGVLGQVMLVTPQLRAAAQAVRGGA 156 >gi|15842067|ref|NP_337104.1| transcription antitermination protein NusB [Mycobacterium tuberculosis CDC1551] gi|13882348|gb|AAK46918.1| N utilization substance protein B [Mycobacterium tuberculosis CDC1551] Length=290 Score = 283 bits (723), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 143/143 (100%), Positives = 143/143 (100%), Gaps = 0/143 (0%) Query 1 MSDRKPVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVAR 60 MSDRKPVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVAR Sbjct 1 MSDRKPVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVAR 60 Query 61 GVSEHAAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAK 120 GVSEHAAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAK Sbjct 61 GVSEHAAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAK 120 Query 121 ELSTDDSPGFVNGVLGQVMLVTP 143 ELSTDDSPGFVNGVLGQVMLVTP Sbjct 121 ELSTDDSPGFVNGVLGQVMLVTP 143 >gi|339295413|gb|AEJ47524.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis CCDC5079] gi|339299033|gb|AEJ51143.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis CCDC5180] Length=139 Score = 269 bits (687), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 138/139 (99%), Positives = 139/139 (100%), Gaps = 0/139 (0%) Query 18 VALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAHIDDLITAHL 77 +ALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAHIDDLITAHL Sbjct 1 MALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAHIDDLITAHL 60 Query 78 RGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSPGFVNGVLGQ 137 RGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSPGFVNGVLGQ Sbjct 61 RGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSPGFVNGVLGQ 120 Query 138 VMLVTPQLRAAAQAVRGGA 156 VMLVTPQLRAAAQAVRGGA Sbjct 121 VMLVTPQLRAAAQAVRGGA 139 >gi|306807668|ref|ZP_07444336.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu007] gi|308345910|gb|EFP34761.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu007] Length=232 Score = 266 bits (681), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 137/138 (99%), Positives = 138/138 (100%), Gaps = 0/138 (0%) Query 18 VALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAHIDDLITAHL 77 +ALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAHIDDLITAHL Sbjct 1 MALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAHIDDLITAHL 60 Query 78 RGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSPGFVNGVLGQ 137 RGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSPGFVNGVLGQ Sbjct 61 RGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSPGFVNGVLGQ 120 Query 138 VMLVTPQLRAAAQAVRGG 155 VMLVTPQLRAAAQAVRGG Sbjct 121 VMLVTPQLRAAAQAVRGG 138 >gi|41407196|ref|NP_960032.1| transcription antitermination protein NusB [Mycobacterium avium subsp. paratuberculosis K-10] gi|118463415|ref|YP_882592.1| transcription antitermination protein NusB [Mycobacterium avium 104] gi|254775857|ref|ZP_05217373.1| transcription antitermination protein NusB [Mycobacterium avium subsp. avium ATCC 25291] gi|81571413|sp|Q741J2.1|NUSB_MYCPA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215696|sp|A0QI54.1|NUSB_MYCA1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|41395547|gb|AAS03415.1| NusB [Mycobacterium avium subsp. paratuberculosis K-10] gi|118164702|gb|ABK65599.1| transcription antitermination factor NusB [Mycobacterium avium 104] gi|336461551|gb|EGO40418.1| transcription antitermination factor NusB [Mycobacterium avium subsp. paratuberculosis S397] Length=156 Score = 250 bits (638), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 124/150 (83%), Positives = 137/150 (92%), Gaps = 0/150 (0%) Query 5 KPVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSE 64 KP+RGRHQARKRAV LLFEAE RG+S AEVVD R LA+ P++A L PYTAAVARGV + Sbjct 3 KPLRGRHQARKRAVDLLFEAEARGLSPAEVVDVRTGLADTNPEVAPLQPYTAAVARGVGD 62 Query 65 HAAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELST 124 HAAHIDDLI++HL+GWTLDRLPAVDRAILRV+VWELL+A DVPEPV VDEAVQLAKELST Sbjct 63 HAAHIDDLISSHLQGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAVDEAVQLAKELST 122 Query 125 DDSPGFVNGVLGQVMLVTPQLRAAAQAVRG 154 DDSPGFVNGVLGQVMLVTPQ+RAAA+AVRG Sbjct 123 DDSPGFVNGVLGQVMLVTPQIRAAARAVRG 152 >gi|240170738|ref|ZP_04749397.1| transcription antitermination protein NusB [Mycobacterium kansasii ATCC 12478] Length=174 Score = 249 bits (637), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 126/149 (85%), Positives = 137/149 (92%), Gaps = 0/149 (0%) Query 5 KPVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSE 64 KPV+GRHQARKRAV +LFEAE RG+S EVV++R ALA AKP++A LHPYTAAVARGVSE Sbjct 8 KPVKGRHQARKRAVDVLFEAEARGMSPLEVVESRTALAAAKPEVAPLHPYTAAVARGVSE 67 Query 65 HAAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELST 124 AAHIDDLI AHL+GWTLDRLPAVDRAILRVSVWELLHA DVPEPV VDEAV+LAKELST Sbjct 68 DAAHIDDLIAAHLQGWTLDRLPAVDRAILRVSVWELLHADDVPEPVAVDEAVELAKELST 127 Query 125 DDSPGFVNGVLGQVMLVTPQLRAAAQAVR 153 D+SPGFVNGVLGQVMLVTPQ+RAAA AVR Sbjct 128 DESPGFVNGVLGQVMLVTPQIRAAAHAVR 156 >gi|342858646|ref|ZP_08715301.1| transcription antitermination protein NusB [Mycobacterium colombiense CECT 3035] gi|342134350|gb|EGT87530.1| transcription antitermination protein NusB [Mycobacterium colombiense CECT 3035] Length=163 Score = 246 bits (627), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 123/148 (84%), Positives = 133/148 (90%), Gaps = 0/148 (0%) Query 7 VRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHA 66 +RGRHQARKRAV LLFEAE RG+S AEVVD R LAE P++A L PYTAA ARGV EHA Sbjct 1 MRGRHQARKRAVDLLFEAEARGLSPAEVVDVRTGLAETNPEVAPLQPYTAAAARGVGEHA 60 Query 67 AHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDD 126 AHIDDLI++HL+GWTLDRLPAVDRAILRV+VWELL+A DVPEPV VDEAVQLAKELSTDD Sbjct 61 AHIDDLISSHLQGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAVDEAVQLAKELSTDD 120 Query 127 SPGFVNGVLGQVMLVTPQLRAAAQAVRG 154 SPGFVNGVLG VMLVTPQ+RAAAQAVRG Sbjct 121 SPGFVNGVLGHVMLVTPQIRAAAQAVRG 148 >gi|108799326|ref|YP_639523.1| transcription antitermination protein NusB [Mycobacterium sp. MCS] gi|119868442|ref|YP_938394.1| transcription antitermination protein NusB [Mycobacterium sp. KMS] gi|126434984|ref|YP_001070675.1| transcription antitermination protein NusB [Mycobacterium sp. JLS] 6 more sequence titles Length=162 Score = 246 bits (627), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 121/156 (78%), Positives = 137/156 (88%), Gaps = 0/156 (0%) Query 1 MSDRKPVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVAR 60 MSDR+P RGRHQARKRAV LLFEAE RG++AAEV +R LA +PD+ L+PYT VAR Sbjct 1 MSDRRPDRGRHQARKRAVDLLFEAEARGLTAAEVATSRNKLAGTQPDVTALNPYTVTVAR 60 Query 61 GVSEHAAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAK 120 GV++H HIDDLI+AHL+GWTLDRLPAVDRAILRV+VWELLHA DVPEPV VDEAV+LAK Sbjct 61 GVTDHRDHIDDLISAHLQGWTLDRLPAVDRAILRVAVWELLHAEDVPEPVAVDEAVELAK 120 Query 121 ELSTDDSPGFVNGVLGQVMLVTPQLRAAAQAVRGGA 156 +LSTDDSPGFVNGVLGQVMLVTPQ+RAA+QAVR A Sbjct 121 QLSTDDSPGFVNGVLGQVMLVTPQIRAASQAVRESA 156 >gi|118470676|ref|YP_887353.1| transcription antitermination protein NusB [Mycobacterium smegmatis str. MC2 155] gi|166215698|sp|A0QWR5.1|NUSB_MYCS2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|118171963|gb|ABK72859.1| transcription antitermination factor NusB [Mycobacterium smegmatis str. MC2 155] Length=160 Score = 245 bits (625), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 123/154 (80%), Positives = 139/154 (91%), Gaps = 0/154 (0%) Query 1 MSDRKPVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVAR 60 M DR+ RGRHQARKRAV LLFEAE RG++A V D+RAALAE + D+A L+PYT VAR Sbjct 1 MPDRRGDRGRHQARKRAVDLLFEAEARGLTAEAVADSRAALAEDQDDVAPLNPYTVLVAR 60 Query 61 GVSEHAAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAK 120 GV+EHAAHIDDLI+AHL+GWTL+RLPAVDRAILRV+VWELLHA DVPEPV VDEAV+LAK Sbjct 61 GVTEHAAHIDDLISAHLQGWTLERLPAVDRAILRVAVWELLHAEDVPEPVAVDEAVELAK 120 Query 121 ELSTDDSPGFVNGVLGQVMLVTPQLRAAAQAVRG 154 ELSTD+SPGFVNGVLGQVMLVTPQ+RAA+QAVRG Sbjct 121 ELSTDESPGFVNGVLGQVMLVTPQIRAASQAVRG 154 >gi|120403637|ref|YP_953466.1| transcription antitermination protein NusB [Mycobacterium vanbaalenii PYR-1] gi|166215702|sp|A1T8G0.1|NUSB_MYCVP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119956455|gb|ABM13460.1| NusB antitermination factor [Mycobacterium vanbaalenii PYR-1] Length=163 Score = 243 bits (620), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 124/156 (80%), Positives = 138/156 (89%), Gaps = 1/156 (0%) Query 1 MSDRKPVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPD-IARLHPYTAAVA 59 M DRK RGRHQARKRAV LLFEAE RGI+AAEV + R ALAE + D IA L+PYT VA Sbjct 1 MPDRKGDRGRHQARKRAVDLLFEAEARGITAAEVAEARNALAEKRTDDIATLNPYTVTVA 60 Query 60 RGVSEHAAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLA 119 +GV+ HAAHIDDLI+AHL+GWTLDRLPAVDRAILRV+VWELLHA DVPEPV VDEAV+LA Sbjct 61 QGVTAHAAHIDDLISAHLQGWTLDRLPAVDRAILRVAVWELLHAEDVPEPVAVDEAVELA 120 Query 120 KELSTDDSPGFVNGVLGQVMLVTPQLRAAAQAVRGG 155 K+LSTDDSPGFVNGVLGQVMLVTPQ+RAAA A++GG Sbjct 121 KQLSTDDSPGFVNGVLGQVMLVTPQIRAAAAAMQGG 156 >gi|254821798|ref|ZP_05226799.1| transcription antitermination protein NusB [Mycobacterium intracellulare ATCC 13950] Length=169 Score = 237 bits (605), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 117/141 (83%), Positives = 128/141 (91%), Gaps = 0/141 (0%) Query 5 KPVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSE 64 +PV+GRHQARKRAV LLFEAE RG+S AEVVD R LAEA P+IA L PYTAAVARGV E Sbjct 3 RPVKGRHQARKRAVDLLFEAEARGLSPAEVVDVRTGLAEANPEIAPLQPYTAAVARGVGE 62 Query 65 HAAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELST 124 HAAH+DDLI++HL+GWTLDRLPAVDRAILRV+VWELL+A DVPEPV VDEAVQLAKELST Sbjct 63 HAAHVDDLISSHLQGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAVDEAVQLAKELST 122 Query 125 DDSPGFVNGVLGQVMLVTPQL 145 DDSPGFVNGVLG VMLVTPQ+ Sbjct 123 DDSPGFVNGVLGHVMLVTPQI 143 >gi|183982195|ref|YP_001850486.1| N utilization substance protein NusB [Mycobacterium marinum M] gi|183175521|gb|ACC40631.1| N utilization substance protein NusB [Mycobacterium marinum M] Length=173 Score = 236 bits (601), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 113/141 (81%), Positives = 126/141 (90%), Gaps = 0/141 (0%) Query 5 KPVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSE 64 KPV+GRHQARKRAV L+FEAE RG+ E+ D R LAE KPD+A LHPYTAAVARG+ + Sbjct 8 KPVKGRHQARKRAVDLMFEAEARGLGPGEIADLRTELAETKPDVAPLHPYTAAVARGIDQ 67 Query 65 HAAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELST 124 HAAHIDDLIT+HL+GWTLDRLPAVDRAILRV+VWELL+A DVPEPV VDEAV+LAKELST Sbjct 68 HAAHIDDLITSHLQGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAVDEAVELAKELST 127 Query 125 DDSPGFVNGVLGQVMLVTPQL 145 DDSP FVNGVLGQVMLVTPQ+ Sbjct 128 DDSPSFVNGVLGQVMLVTPQI 148 >gi|118617385|ref|YP_905717.1| transcription antitermination protein NusB [Mycobacterium ulcerans Agy99] gi|118569495|gb|ABL04246.1| N utilization substance protein NusB [Mycobacterium ulcerans Agy99] Length=173 Score = 234 bits (596), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 113/141 (81%), Positives = 125/141 (89%), Gaps = 0/141 (0%) Query 5 KPVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSE 64 KPV+GRHQARKRAV L+FEAE RG+ E+ D R LAE KPD+A LHPYTAAVARG+ E Sbjct 8 KPVKGRHQARKRAVDLMFEAEARGLGPGEIADLRTELAETKPDVAPLHPYTAAVARGIGE 67 Query 65 HAAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELST 124 HAAHIDDLIT+HL+GWTLDRLPAVDRAILRV+VWELL+A DVPEPV VDEAV+LAKELST Sbjct 68 HAAHIDDLITSHLQGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAVDEAVELAKELST 127 Query 125 DDSPGFVNGVLGQVMLVTPQL 145 DDSP FVNGVLGQVMLV PQ+ Sbjct 128 DDSPSFVNGVLGQVMLVRPQI 148 >gi|296170770|ref|ZP_06852342.1| N utilization substance protein B [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894585|gb|EFG74322.1| N utilization substance protein B [Mycobacterium parascrofulaceum ATCC BAA-614] Length=168 Score = 233 bits (594), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 115/142 (81%), Positives = 126/142 (89%), Gaps = 0/142 (0%) Query 5 KPVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSE 64 +PV+GRHQARKRAV LLFEAE RG+ AEVVD RA LA A PD+A L PYT A ARGV E Sbjct 6 RPVKGRHQARKRAVDLLFEAEARGLGPAEVVDVRATLAAANPDVAPLQPYTVAAARGVGE 65 Query 65 HAAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELST 124 HAAHIDDLI++HL+GWTLDRLPAVDRAILRV+VWELL+A DVPEPV VDEAVQLAKELST Sbjct 66 HAAHIDDLISSHLQGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAVDEAVQLAKELST 125 Query 125 DDSPGFVNGVLGQVMLVTPQLR 146 D+SP FVNGVLGQVMLVTPQ+R Sbjct 126 DESPAFVNGVLGQVMLVTPQIR 147 >gi|145224333|ref|YP_001135011.1| transcription antitermination protein NusB [Mycobacterium gilvum PYR-GCK] gi|315444665|ref|YP_004077544.1| NusB antitermination factor [Mycobacterium sp. Spyr1] gi|189035893|sp|A4TBX3.1|NUSB_MYCGI RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|145216819|gb|ABP46223.1| NusB antitermination factor [Mycobacterium gilvum PYR-GCK] gi|315262968|gb|ADT99709.1| NusB antitermination factor [Mycobacterium sp. Spyr1] Length=164 Score = 231 bits (590), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 122/154 (80%), Positives = 136/154 (89%), Gaps = 1/154 (0%) Query 1 MSDRKPVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAE-AKPDIARLHPYTAAVA 59 M DRK RGRHQARKRAV LLFEAE RGI+AAEV + R ALA+ DIA L+PYT VA Sbjct 1 MPDRKGDRGRHQARKRAVDLLFEAEARGITAAEVAEARNALADNGADDIAPLNPYTVTVA 60 Query 60 RGVSEHAAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLA 119 RGV++HAAHIDDLI+AHL+GWTLDRLPAVDRA+LRV+VWELLHA DVPEPV VDEAV+LA Sbjct 61 RGVTDHAAHIDDLISAHLQGWTLDRLPAVDRAVLRVAVWELLHAVDVPEPVAVDEAVELA 120 Query 120 KELSTDDSPGFVNGVLGQVMLVTPQLRAAAQAVR 153 K+LSTDDSPGFVNGVLGQVMLVTPQ+RAAA AV+ Sbjct 121 KQLSTDDSPGFVNGVLGQVMLVTPQIRAAAAAVQ 154 >gi|333990968|ref|YP_004523582.1| N utilization substance protein NusB [Mycobacterium sp. JDM601] gi|333486936|gb|AEF36328.1| N utilization substance protein NusB [Mycobacterium sp. JDM601] Length=166 Score = 230 bits (587), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 112/147 (77%), Positives = 130/147 (89%), Gaps = 0/147 (0%) Query 7 VRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHA 66 ++GRHQARKRAV LLFE+E RG++ A+ + R ALA +PD+A LHPYT VA GV+ H+ Sbjct 1 MKGRHQARKRAVDLLFESEARGLTPAQGAELRTALAAEQPDVAPLHPYTVTVADGVTAHS 60 Query 67 AHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDD 126 AHIDDLIT+HL+GW L+RLPAVDRAILRV++WELLHA DVPEPV VDEAV+LAKELSTDD Sbjct 61 AHIDDLITSHLQGWKLERLPAVDRAILRVAIWELLHAEDVPEPVAVDEAVKLAKELSTDD 120 Query 127 SPGFVNGVLGQVMLVTPQLRAAAQAVR 153 SPGFVNGVLGQVMLVTPQLRAA+QAVR Sbjct 121 SPGFVNGVLGQVMLVTPQLRAASQAVR 147 >gi|15827185|ref|NP_301448.1| transcription antitermination protein NusB [Mycobacterium leprae TN] gi|221229663|ref|YP_002503079.1| transcription antitermination protein NusB [Mycobacterium leprae Br4923] gi|18202776|sp|Q9CCR9.1|NUSB_MYCLE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772649|sp|B8ZUK7.1|NUSB_MYCLB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|13092733|emb|CAC30031.1| putative transcription termination protein [Mycobacterium leprae] gi|219932770|emb|CAR70616.1| putative transcription termination protein [Mycobacterium leprae Br4923] Length=190 Score = 221 bits (564), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 106/142 (75%), Positives = 125/142 (89%), Gaps = 0/142 (0%) Query 5 KPVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSE 64 PV+GRHQARKRAV LLFEAE R +S E+++ R+ALA++K D+A LHPYT VA+GVSE Sbjct 3 NPVKGRHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSE 62 Query 65 HAAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELST 124 H A ID+LI +HL+GW LDRLPAVDRAILRVS+WELL+A DVPEPV VDEAV+LAKELST Sbjct 63 HTARIDELIISHLQGWKLDRLPAVDRAILRVSIWELLYADDVPEPVAVDEAVELAKELST 122 Query 125 DDSPGFVNGVLGQVMLVTPQLR 146 DDSPGFVNG+LG+VMLVTPQ+R Sbjct 123 DDSPGFVNGLLGKVMLVTPQIR 144 >gi|169629920|ref|YP_001703569.1| transcription antitermination protein NusB [Mycobacterium abscessus ATCC 19977] gi|169241887|emb|CAM62915.1| Probable transcription antitermination factor NusB [Mycobacterium abscessus] Length=173 Score = 204 bits (518), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 102/141 (73%), Positives = 121/141 (86%), Gaps = 0/141 (0%) Query 9 GRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAH 68 GR +ARKRAV LLFEAE R ++AA V D R ALA +KPDI L+PYT +VA GV+EHAAH Sbjct 27 GRRKARKRAVDLLFEAEAREMTAAGVADERRALAASKPDIDPLNPYTVSVAHGVTEHAAH 86 Query 69 IDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSP 128 ID+LI++HL+GWTL RLPAVDRAILRV+VWELLHA DVPE V VDEAV+LAK+LSTD+SP Sbjct 87 IDELISSHLQGWTLARLPAVDRAILRVAVWELLHAQDVPEVVAVDEAVELAKQLSTDESP 146 Query 129 GFVNGVLGQVMLVTPQLRAAA 149 FVNGVLGQ+MLVTP +R ++ Sbjct 147 AFVNGVLGQLMLVTPHIRGSS 167 >gi|312139563|ref|YP_004006899.1| transcriptional antiterminator factor nusb [Rhodococcus equi 103S] gi|325672553|ref|ZP_08152249.1| transcription antitermination protein NusB [Rhodococcus equi ATCC 33707] gi|311888902|emb|CBH48215.1| transcriptional antiterminator factor NusB [Rhodococcus equi 103S] gi|325556430|gb|EGD26096.1| transcription antitermination protein NusB [Rhodococcus equi ATCC 33707] Length=167 Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 87/142 (62%), Positives = 107/142 (76%), Gaps = 0/142 (0%) Query 5 KPVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSE 64 K + RH+ARKRAV LFEAE R + ++ D R+ LA +A + PYT V +GV+E Sbjct 6 KKLGARHKARKRAVDFLFEAEARDVDPVDLADERSDLAGRDDSVAPVAPYTVTVVQGVAE 65 Query 65 HAAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELST 124 + +D +I +HL+ WTLDRLPAVDRAILR++VWEL HA DVP V VDEAV+LAKELST Sbjct 66 NLDRLDQVIESHLQDWTLDRLPAVDRAILRIAVWELFHATDVPPVVAVDEAVELAKELST 125 Query 125 DDSPGFVNGVLGQVMLVTPQLR 146 DDSPGFVNGVLGQV+LV PQ+R Sbjct 126 DDSPGFVNGVLGQVVLVAPQVR 147 >gi|111024096|ref|YP_707068.1| transcription antitermination protein NusB [Rhodococcus jostii RHA1] gi|119390812|sp|Q0S0M6.1|NUSB_RHOSR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|110823626|gb|ABG98910.1| N utilization substance protein B [Rhodococcus jostii RHA1] Length=169 Score = 171 bits (432), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 85/148 (58%), Positives = 110/148 (75%), Gaps = 0/148 (0%) Query 5 KPVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSE 64 K + RH+ARKRAV LFEAE R + ++ RA L+ +A + PYT V GV+E Sbjct 6 KKLGARHKARKRAVDFLFEAEARDLDPVDLATERAELSGKDDSVAPVAPYTVTVVTGVAE 65 Query 65 HAAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELST 124 + +D++I +HL+ WTL+RLPAVDRAILR++VWEL HA DVP V VDEAV+LAK+LST Sbjct 66 NLDRLDEVIRSHLQDWTLERLPAVDRAILRIAVWELFHATDVPPVVAVDEAVELAKQLST 125 Query 125 DDSPGFVNGVLGQVMLVTPQLRAAAQAV 152 D+SPGFVNG+LGQV+LV PQ+R+AA A Sbjct 126 DESPGFVNGILGQVVLVAPQVRSAAAAT 153 >gi|226306485|ref|YP_002766445.1| transcription antitermination protein NusB [Rhodococcus erythropolis PR4] gi|259514883|sp|C0ZZC1.1|NUSB_RHOE4 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226185602|dbj|BAH33706.1| transcription antitermination protein NusB [Rhodococcus erythropolis PR4] Length=165 Score = 166 bits (421), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 84/147 (58%), Positives = 108/147 (74%), Gaps = 0/147 (0%) Query 5 KPVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSE 64 K + RH+ARKRAV LFEAE R + + R+ L+ +A + YT + GV+E Sbjct 6 KKLGARHKARKRAVDFLFEAEARDLDPVALASERSDLSVKDDAVAPVAAYTVTLVSGVAE 65 Query 65 HAAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELST 124 + ID +I++HL+ WTL+RLPAVDRAILR++VWEL HA DVP V VDEAV+LAK+LST Sbjct 66 NLDRIDQVISSHLQDWTLERLPAVDRAILRIAVWELFHATDVPPVVAVDEAVELAKQLST 125 Query 125 DDSPGFVNGVLGQVMLVTPQLRAAAQA 151 DDSPGFVNG+LGQV+LV PQ+R+AA A Sbjct 126 DDSPGFVNGILGQVVLVAPQVRSAAAA 152 >gi|54025601|ref|YP_119843.1| transcription antitermination protein NusB [Nocardia farcinica IFM 10152] gi|81602600|sp|Q5YTL2.1|NUSB_NOCFA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|54017109|dbj|BAD58479.1| putative transcription termination factor [Nocardia farcinica IFM 10152] Length=169 Score = 166 bits (420), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 86/144 (60%), Positives = 105/144 (73%), Gaps = 0/144 (0%) Query 2 SDRKPVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARG 61 S K + RH+AR+RAV LLFEAE R + AA+++ RA LA +A LH YT + G Sbjct 10 STFKKLGARHKARRRAVDLLFEAEARDVDAADLLTERADLATRDQSVAPLHAYTRTLVEG 69 Query 62 VSEHAAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKE 121 V++ +D I ++L+ WTL RLPAVDRAILRV+VWEL HA DVP V VDEAV+LAKE Sbjct 70 VADELERVDGTIESYLQDWTLSRLPAVDRAILRVAVWELFHATDVPPVVAVDEAVELAKE 129 Query 122 LSTDDSPGFVNGVLGQVMLVTPQL 145 LSTDDSP FVNGVLGQV+LV PQ+ Sbjct 130 LSTDDSPSFVNGVLGQVVLVAPQV 153 >gi|229493670|ref|ZP_04387455.1| transcription antitermination factor NusB [Rhodococcus erythropolis SK121] gi|229319631|gb|EEN85467.1| transcription antitermination factor NusB [Rhodococcus erythropolis SK121] Length=165 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 84/147 (58%), Positives = 108/147 (74%), Gaps = 0/147 (0%) Query 5 KPVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSE 64 K + RH+ARKRAV LFEAE R + + R+ L+ +A + YT + GV+E Sbjct 6 KKLGARHKARKRAVDFLFEAEARDLDPVALASERSDLSVKDDAVAPVAAYTVTLVSGVAE 65 Query 65 HAAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELST 124 + ID +I++HL+ WTL+RLPAVDRAILR++VWEL HA DVP V VDEAV+LAK+LST Sbjct 66 NLDRIDQVISSHLQDWTLERLPAVDRAILRIAVWELFHATDVPPVVAVDEAVELAKQLST 125 Query 125 DDSPGFVNGVLGQVMLVTPQLRAAAQA 151 DDSPGFVNG+LGQV+LV PQ+R+AA A Sbjct 126 DDSPGFVNGILGQVVLVAPQVRSAAAA 152 >gi|226366336|ref|YP_002784119.1| transcription antitermination protein NusB [Rhodococcus opacus B4] gi|254772652|sp|C1B4I5.1|NUSB_RHOOB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226244826|dbj|BAH55174.1| transcription antitermination protein NusB [Rhodococcus opacus B4] Length=169 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 81/141 (58%), Positives = 106/141 (76%), Gaps = 0/141 (0%) Query 5 KPVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSE 64 K + RH+ARKRAV LFEAE R + ++ RA L+ +A + PYT V GV+E Sbjct 6 KKLGARHKARKRAVDFLFEAEARDLDPVDLATERAELSGKDDSVAPVAPYTVTVVTGVAE 65 Query 65 HAAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELST 124 + +D++I++HL+ WTL+RLPAVDRAILR++VWEL HA DVP V VDEAV+LAK+LST Sbjct 66 NLDRLDEVISSHLQDWTLERLPAVDRAILRIAVWELFHATDVPPVVAVDEAVELAKQLST 125 Query 125 DDSPGFVNGVLGQVMLVTPQL 145 D+SPGFVNG+LGQV+LV PQ+ Sbjct 126 DESPGFVNGILGQVVLVAPQV 146 >gi|333919520|ref|YP_004493101.1| N utilization substance protein B [Amycolicicoccus subflavus DQS3-9A1] gi|333481741|gb|AEF40301.1| N utilization substance protein B [Amycolicicoccus subflavus DQS3-9A1] Length=200 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 83/142 (59%), Positives = 100/142 (71%), Gaps = 0/142 (0%) Query 5 KPVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSE 64 K RH+AR+R+V LFEAE R V R ALA + + YT V RGV + Sbjct 7 KKFGARHKARRRSVDFLFEAEARSCKPTAVASERVALAAENDQMPPVAEYTHTVVRGVEQ 66 Query 65 HAAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELST 124 + +DD+I+ HL WTL+RLPAVDRAILRV+ WELL+A DVP V VDEAV+LAKELST Sbjct 67 NKQRLDDVISTHLHEWTLERLPAVDRAILRVATWELLYATDVPSVVAVDEAVELAKELST 126 Query 125 DDSPGFVNGVLGQVMLVTPQLR 146 DDSPGF+NGVLGQ++LV PQLR Sbjct 127 DDSPGFINGVLGQLVLVAPQLR 148 >gi|343924546|ref|ZP_08764094.1| N utilization substance protein B homolog [Gordonia alkanivorans NBRC 16433] gi|343765481|dbj|GAA11020.1| N utilization substance protein B homolog [Gordonia alkanivorans NBRC 16433] Length=157 Score = 157 bits (398), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 78/142 (55%), Positives = 104/142 (74%), Gaps = 0/142 (0%) Query 10 RHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAHI 69 RH+AR+RAV LLFEAE + +S A++V R + + +H YTA V G+++ I Sbjct 7 RHKARRRAVDLLFEAEAKKVSPAQLVAERREYVRSDESVGSIHDYTATVINGLADDQDQI 66 Query 70 DDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSPG 129 D +I++HLR WTL+RLPAVDRAI+R++ WEL ++ DV VVVDEAV+LAKELSTDDSP Sbjct 67 DAVISSHLREWTLERLPAVDRAIMRLATWELFNSLDVDTIVVVDEAVELAKELSTDDSPA 126 Query 130 FVNGVLGQVMLVTPQLRAAAQA 151 FVNGVL ++ + PQ+RAAA A Sbjct 127 FVNGVLAKIAELAPQVRAAASA 148 >gi|326382154|ref|ZP_08203846.1| transcription antitermination protein NusB [Gordonia neofelifaecis NRRL B-59395] gi|326198884|gb|EGD56066.1| transcription antitermination protein NusB [Gordonia neofelifaecis NRRL B-59395] Length=149 Score = 157 bits (397), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 79/142 (56%), Positives = 103/142 (73%), Gaps = 0/142 (0%) Query 10 RHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAHI 69 RH+ARKRAV LLFEAE + + A +++ R + + + ++ YT V GV+ A+ + Sbjct 7 RHKARKRAVDLLFEAEAKNVKATQLIAERREIYPSDDSVGTMYDYTVRVVEGVTVDASQV 66 Query 70 DDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSPG 129 D +I +HL W L RLPAVDRAILR++VWELL+A DV VV+DEAV+LAKELSTDDSP Sbjct 67 DAVIESHLENWKLHRLPAVDRAILRLAVWELLYANDVDIDVVLDEAVELAKELSTDDSPS 126 Query 130 FVNGVLGQVMLVTPQLRAAAQA 151 FVNGVLG+V + PQ+RAAA A Sbjct 127 FVNGVLGKVAELAPQVRAAASA 148 >gi|296140288|ref|YP_003647531.1| NusB antitermination factor [Tsukamurella paurometabola DSM 20162] gi|296028422|gb|ADG79192.1| NusB antitermination factor [Tsukamurella paurometabola DSM 20162] Length=165 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 79/148 (54%), Positives = 105/148 (71%), Gaps = 3/148 (2%) Query 3 DRKPVRG--RHQARKRAVALLFEAEVRGISAAE-VVDTRAALAEAKPDIARLHPYTAAVA 59 +++P + RH+ARKRAV LLFE E RG++ + ++ R LA + + YTA + Sbjct 7 NKRPKKSGARHRARKRAVDLLFEVEARGVTDVDGLLAERRTLAADDASVPPVSEYTAQLV 66 Query 60 RGVSEHAAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLA 119 GV +D +IT+HL GWTL RLPAVDRAILRV+VWEL +A DVP VVVDEAV+LA Sbjct 67 TGVDVDREQLDSVITSHLTGWTLARLPAVDRAILRVAVWELFNAPDVPPAVVVDEAVELA 126 Query 120 KELSTDDSPGFVNGVLGQVMLVTPQLRA 147 KELSTD+SP ++NGVLG+V + PQ+R+ Sbjct 127 KELSTDESPSYLNGVLGKVATLAPQVRS 154 >gi|256379255|ref|YP_003102915.1| NusB antitermination factor [Actinosynnema mirum DSM 43827] gi|255923558|gb|ACU39069.1| NusB antitermination factor [Actinosynnema mirum DSM 43827] Length=139 Score = 147 bits (370), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 74/138 (54%), Positives = 100/138 (73%), Gaps = 4/138 (2%) Query 10 RHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAHI 69 R +ARKRAV +++EA+ RG+ A ++ R + P ++ YT ++ GV+ H A I Sbjct 4 RTKARKRAVDVIYEADQRGVDAVTLLSDRVGSTDVPP----INEYTVSLVEGVTAHRARI 59 Query 70 DDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSPG 129 DDLI+ H GWTL R+PAVDRA+LRV ++ELL AADVP+ V +DEAV+LAK LSTDDSP Sbjct 60 DDLISEHSEGWTLQRMPAVDRAVLRVGLYELLWAADVPDAVAIDEAVELAKGLSTDDSPR 119 Query 130 FVNGVLGQVMLVTPQLRA 147 FVNGVLG++ ++ QLRA Sbjct 120 FVNGVLGRIAVIADQLRA 137 >gi|317505974|ref|ZP_07963806.1| transcription antitermination factor NusB [Segniliparus rugosus ATCC BAA-974] gi|316255750|gb|EFV14988.1| transcription antitermination factor NusB [Segniliparus rugosus ATCC BAA-974] Length=166 Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 77/143 (54%), Positives = 100/143 (70%), Gaps = 1/143 (0%) Query 10 RHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAHI 69 R +AR RAV LLFEAE R + AE+ R+A +L PY V GV +H + Sbjct 16 RRKARLRAVELLFEAEARDLDPAELAAERSAELVKDLSAPQLTPYALVVLEGVRDHLEVV 75 Query 70 DDLITAHLRG-WTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSP 128 D I+ HLRG W+L+RLPAVDR+ILRV+VWELL A +VP V VDEA++LAK LSTD+SP Sbjct 76 DQTISDHLRGDWSLNRLPAVDRSILRVAVWELLFAPEVPTAVAVDEALELAKGLSTDESP 135 Query 129 GFVNGVLGQVMLVTPQLRAAAQA 151 GF+NGVLG+++ + Q+R AA+A Sbjct 136 GFINGVLGRLVELANQIRGAAEA 158 >gi|296394716|ref|YP_003659600.1| NusB antitermination factor [Segniliparus rotundus DSM 44985] gi|296181863|gb|ADG98769.1| NusB antitermination factor [Segniliparus rotundus DSM 44985] Length=157 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 74/143 (52%), Positives = 97/143 (68%), Gaps = 1/143 (0%) Query 9 GRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAH 68 R +AR+RAV LLFEAE R + AE+ R+A +L PY + GV ++ Sbjct 14 SRRKARRRAVELLFEAEARDLDPAELAAERSAELVKDLSAPQLTPYALLLLEGVRDNLDV 73 Query 69 IDDLITAHLRG-WTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDS 127 +D I HLRG WTL RLPAVDR+ILR++VWELL A +VP V VDEA++LAKELSTDDS Sbjct 74 VDQTIIDHLRGGWTLQRLPAVDRSILRIAVWELLFATEVPTAVAVDEALELAKELSTDDS 133 Query 128 PGFVNGVLGQVMLVTPQLRAAAQ 150 P F+NGVLGQ++ + Q R++ + Sbjct 134 PSFINGVLGQLVALADQARSSVE 156 >gi|262202262|ref|YP_003273470.1| transcription antitermination factor NusB [Gordonia bronchialis DSM 43247] gi|262085609|gb|ACY21577.1| transcription antitermination factor NusB [Gordonia bronchialis DSM 43247] Length=163 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 74/137 (55%), Positives = 100/137 (73%), Gaps = 0/137 (0%) Query 10 RHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAHI 69 RH+AR+RAV +LFEAE + +S A++V R L + + +H YTA V G+++ I Sbjct 7 RHKARRRAVDILFEAEAKQVSPAQLVAERRELVRSDESVGAIHDYTARVIEGLADDQEQI 66 Query 70 DDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSPG 129 D +I++HLR WTL RLPAVDRAILR++ WEL ++ DV V+VDEAV+LAKELSTDDSP Sbjct 67 DSVISSHLREWTLPRLPAVDRAILRLATWELFNSVDVDTVVIVDEAVELAKELSTDDSPA 126 Query 130 FVNGVLGQVMLVTPQLR 146 FVNGVL ++ + PQ+R Sbjct 127 FVNGVLAKIADLAPQVR 143 >gi|258654403|ref|YP_003203559.1| NusB antitermination factor [Nakamurella multipartita DSM 44233] gi|258557628|gb|ACV80570.1| NusB antitermination factor [Nakamurella multipartita DSM 44233] Length=144 Score = 136 bits (343), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 74/142 (53%), Positives = 94/142 (67%), Gaps = 4/142 (2%) Query 10 RHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHP---YTAAVARGVSEHA 66 R ++RKRA+ +LF AE RG+ V+ R PD P Y + RG EH Sbjct 4 RSKSRKRALDVLFAAEARGVDPLVVLSERME-EPTGPDRHSWTPIGDYAEGLVRGFVEHQ 62 Query 67 AHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDD 126 +D L+ H RGWT+DR+PAVDRAILR++V+ELL++ +VP VVV+EAV AK LSTDD Sbjct 63 DRVDTLLAEHSRGWTVDRMPAVDRAILRIAVYELLYSTEVPPAVVVNEAVDSAKILSTDD 122 Query 127 SPGFVNGVLGQVMLVTPQLRAA 148 SP FVNGVLGQ+ +TPQLR A Sbjct 123 SPRFVNGVLGQIAAITPQLRGA 144 >gi|256832560|ref|YP_003161287.1| NusB antitermination factor [Jonesia denitrificans DSM 20603] gi|256686091|gb|ACV08984.1| NusB antitermination factor [Jonesia denitrificans DSM 20603] Length=138 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 71/138 (52%), Positives = 94/138 (69%), Gaps = 5/138 (3%) Query 9 GRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHP-YTAAVARGVSEHAA 67 R +ARKRAV +L+EA+ R +SAA+V+D R A P + P Y + GV H Sbjct 3 ARSKARKRAVNILYEADQRNLSAAQVLDIRLA----DPGVPSALPQYAVDLVEGVILHRE 58 Query 68 HIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDS 127 ID+++ + RGW L R+PAVDRAILR+ WELL+ DVP+ V +DEAV LA+ELST+DS Sbjct 59 RIDEILETYSRGWPLRRMPAVDRAILRLGTWELLYNDDVPDIVAIDEAVDLARELSTEDS 118 Query 128 PGFVNGVLGQVMLVTPQL 145 P FVNG+LG+VM + P L Sbjct 119 PSFVNGLLGRVMDIKPAL 136 >gi|72161498|ref|YP_289155.1| transcription antitermination protein NusB [Thermobifida fusca YX] gi|119390842|sp|Q47QY5.1|NUSB_THEFY RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|71915230|gb|AAZ55132.1| NusB antitermination factor [Thermobifida fusca YX] Length=142 Score = 133 bits (335), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 69/137 (51%), Positives = 94/137 (69%), Gaps = 5/137 (3%) Query 9 GRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAH 68 RH+AR RAV +L+EAEVRG+ +EV++ R A E ++ +T +A V EH A Sbjct 9 SRHKARVRAVEILYEAEVRGVPVSEVIERRRAQTEPP-----INEFTEQLATRVDEHRAR 63 Query 69 IDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSP 128 ID+L+ + GWTLDR+P VDR ILR+ V+ELL A D+P+ V + EAV +AKELSTD+SP Sbjct 64 IDELLETYAIGWTLDRMPVVDRNILRIGVYELLWADDIPDGVAIAEAVAMAKELSTDESP 123 Query 129 GFVNGVLGQVMLVTPQL 145 FVNG+L ++M P L Sbjct 124 VFVNGLLSRLMEKKPSL 140 >gi|300784648|ref|YP_003764939.1| transcription antiterminator NusB [Amycolatopsis mediterranei U32] gi|299794162|gb|ADJ44537.1| transcription antiterminator NusB [Amycolatopsis mediterranei U32] gi|340526071|gb|AEK41276.1| transcription antiterminator NusB [Amycolatopsis mediterranei S699] Length=151 Score = 133 bits (334), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 73/146 (50%), Positives = 94/146 (65%), Gaps = 8/146 (5%) Query 6 PVRG----RHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARG 61 P RG R QAR+RAV +L+EA R A ++ R E P + YT + G Sbjct 8 PNRGGAISRRQARRRAVEMLYEAVQRDTDAVTLLADRVGATEVDP----IGDYTITLVEG 63 Query 62 VSEHAAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKE 121 V+ ID+L+ H +GWTL+R+P VD A+LRV V+ELL A DVP+PV +DEAV LAKE Sbjct 64 VTGRKTQIDELLAEHAQGWTLERMPKVDLAVLRVGVYELLWAEDVPDPVAIDEAVGLAKE 123 Query 122 LSTDDSPGFVNGVLGQVMLVTPQLRA 147 LSTDDSP FVNGVLG++ + +LRA Sbjct 124 LSTDDSPRFVNGVLGRIGTIADRLRA 149 >gi|324998653|ref|ZP_08119765.1| NusB antitermination factor [Pseudonocardia sp. P1] Length=139 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 70/141 (50%), Positives = 93/141 (66%), Gaps = 4/141 (2%) Query 7 VRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHA 66 +R R +ARKRA+ +LFEAE RG + EV+ R +A P + Y A + GV+ H Sbjct 1 MRARTKARKRALDILFEAEARGEAPLEVLTARRETDDAPP----VQEYAARLVEGVATHR 56 Query 67 AHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDD 126 ID L+ H GWT+DR+PAVDR +LR+ V+ELL DV +PV + EAV+LA+ LSTDD Sbjct 57 ERIDQLLAEHAEGWTVDRMPAVDRGLLRIGVYELLWVDDVDDPVAITEAVELARTLSTDD 116 Query 127 SPGFVNGVLGQVMLVTPQLRA 147 SP +VNGVLGQ+ + LRA Sbjct 117 SPRYVNGVLGQISDIAEHLRA 137 >gi|296129685|ref|YP_003636935.1| NusB antitermination factor [Cellulomonas flavigena DSM 20109] gi|296021500|gb|ADG74736.1| NusB antitermination factor [Cellulomonas flavigena DSM 20109] Length=138 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 71/139 (52%), Positives = 95/139 (69%), Gaps = 5/139 (3%) Query 10 RHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDI-ARLHPYTAAVARGVSEHAAH 68 R +ARKRA+ +LFEAE RG+ AE++ R +P A L Y + GV EHA Sbjct 4 RTKARKRALDVLFEAEQRGLDVAELLAKRVV----EPGTEASLPQYAVELVEGVLEHAER 59 Query 69 IDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSP 128 ID+L+ H GWT+ R+PAVDRA+LR+ WE+L DVP+ V VDEAV LA+ELSTD+SP Sbjct 60 IDELLATHSHGWTVARMPAVDRALLRLGAWEILWNDDVPDAVAVDEAVSLARELSTDESP 119 Query 129 GFVNGVLGQVMLVTPQLRA 147 FVNG+LG+++++ P L A Sbjct 120 AFVNGLLGRLVVLKPTLLA 138 >gi|116670816|ref|YP_831749.1| NusB antitermination factor [Arthrobacter sp. FB24] gi|166215661|sp|A0JX79.1|NUSB_ARTS2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|116610925|gb|ABK03649.1| NusB antitermination factor [Arthrobacter sp. FB24] Length=136 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 67/138 (49%), Positives = 93/138 (68%), Gaps = 5/138 (3%) Query 10 RHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAHI 69 R +AR RA+ +LFEAE R +SA +V+ +R E I ++PYT + GV H A I Sbjct 4 RGKARNRALDVLFEAEQRSLSAFDVLRSRR---EKTDQI--VNPYTLEIVEGVVSHQAAI 58 Query 70 DDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSPG 129 D+ + + +GWTL+R+P+VDR ILR+ WELL+ DVP+ V V EAV LAK LSTD+SP Sbjct 59 DEFLETYSQGWTLERMPSVDRIILRIGTWELLYNDDVPDGVAVSEAVALAKTLSTDESPS 118 Query 130 FVNGVLGQVMLVTPQLRA 147 F+NG+LG++ + P L A Sbjct 119 FINGLLGRLQQLKPSLLA 136 >gi|119716645|ref|YP_923610.1| transcription antitermination factor NusB [Nocardioides sp. JS614] gi|166215705|sp|A1SJD8.1|NUSB_NOCSJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119537306|gb|ABL81923.1| NusB antitermination factor [Nocardioides sp. JS614] Length=135 Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 68/136 (50%), Positives = 94/136 (70%), Gaps = 5/136 (3%) Query 10 RHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAHI 69 R +ARKRA+ +LF ++VRG A +D A+AE + + YTA + RGV EH A I Sbjct 4 RSKARKRALDVLFASDVRGEDAVAALDR--AIAEGE---GPTNDYTATLVRGVVEHQARI 58 Query 70 DDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSPG 129 D+L++++ GW LDR+PAVDR +LR+ VWELL+A DVP+ V V EA+ L +LSTD+SP Sbjct 59 DELLSSYSHGWALDRMPAVDRNVLRLGVWELLYADDVPDAVAVSEAMALVTDLSTDESPQ 118 Query 130 FVNGVLGQVMLVTPQL 145 FVNG+LG ++ P L Sbjct 119 FVNGILGSIVRNKPSL 134 >gi|296269370|ref|YP_003652002.1| NusB antitermination factor [Thermobispora bispora DSM 43833] gi|296092157|gb|ADG88109.1| NusB antitermination factor [Thermobispora bispora DSM 43833] Length=144 Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 69/136 (51%), Positives = 91/136 (67%), Gaps = 5/136 (3%) Query 10 RHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAHI 69 R QAR+RA+ +LFEAE R +S +V+D RA EA P + YT + GV H I Sbjct 12 RTQARQRALDILFEAEARAVSPLQVLDERAK--EADPPVLE---YTVTLVEGVVRHQDRI 66 Query 70 DDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSPG 129 D+LI+ + +GWTLDR+PAVDR ILR +E+L + DVPE VV+ E V+LA ELSTD+SP Sbjct 67 DELISTYAQGWTLDRMPAVDRNILRAGTYEMLWSTDVPENVVISEWVRLAAELSTDESPH 126 Query 130 FVNGVLGQVMLVTPQL 145 FVNG+L + + P L Sbjct 127 FVNGLLARFKELKPSL 142 >gi|256391589|ref|YP_003113153.1| NusB antitermination factor [Catenulispora acidiphila DSM 44928] gi|256357815|gb|ACU71312.1| NusB antitermination factor [Catenulispora acidiphila DSM 44928] Length=145 Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 67/140 (48%), Positives = 96/140 (69%), Gaps = 3/140 (2%) Query 10 RHQARKRAVALLFEAEVRGISAAEVV-DTRAALAEAKPD--IARLHPYTAAVARGVSEHA 66 R +AR+RA+ +LFEA++RG+ V+ DT+A + P+ I ++ PY A + GV EH Sbjct 5 RSKARQRALEILFEADLRGVDPRTVLADTQARIRAQGPEGTIPQVQPYAATLVEGVLEHV 64 Query 67 AHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDD 126 IDDL+ H GW LDR+P VDR +LR+ V+ELL +DVP+ VV+DEAV LA+ +STD+ Sbjct 65 DKIDDLLDEHSEGWALDRMPTVDRNVLRIGVYELLWQSDVPDAVVLDEAVSLARLMSTDE 124 Query 127 SPGFVNGVLGQVMLVTPQLR 146 SP FVNG+L ++ V L+ Sbjct 125 SPQFVNGLLARIAEVKDSLK 144 >gi|302525862|ref|ZP_07278204.1| transcription antitermination factor NusB [Streptomyces sp. AA4] gi|302434757|gb|EFL06573.1| transcription antitermination factor NusB [Streptomyces sp. AA4] Length=152 Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 72/146 (50%), Positives = 94/146 (65%), Gaps = 8/146 (5%) Query 6 PVRG----RHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARG 61 P RG R QAR+RAV +L+EA R ++ R E P + YT V G Sbjct 9 PNRGGAISRRQARRRAVEMLYEAAQRSADPVTLLADRVGAVEVDP----VADYTITVVEG 64 Query 62 VSEHAAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKE 121 V+ H ID+L+ H +GWTL+R+P VD A+LRV V+E+L +ADVP+ V +DEAV LAKE Sbjct 65 VTAHRERIDELLAEHSQGWTLERMPPVDLAVLRVGVYEMLWSADVPDAVAIDEAVGLAKE 124 Query 122 LSTDDSPGFVNGVLGQVMLVTPQLRA 147 LSTDDSP FVNGVLG++ + +LRA Sbjct 125 LSTDDSPRFVNGVLGRIGTIADRLRA 150 >gi|297155776|gb|ADI05488.1| transcription antitermination protein NusB [Streptomyces bingchenggensis BCW-1] Length=150 Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 66/141 (47%), Positives = 89/141 (64%), Gaps = 0/141 (0%) Query 10 RHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAHI 69 R++ARKRA +LFEA+ RG S V+ A + YT + G +++ A I Sbjct 4 RNKARKRAFQILFEADQRGTSVQTVLADWIRHARTDDRQPPVSEYTMQLVEGYAQYTARI 63 Query 70 DDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSPG 129 D+LI+ + GWTLDR+P VDR ILR+ +EL+ + P+ VV+DEAVQLAKE STDDSP Sbjct 64 DELISTYAVGWTLDRMPVVDRNILRLGAYELVWEDETPDAVVIDEAVQLAKEFSTDDSPA 123 Query 130 FVNGVLGQVMLVTPQLRAAAQ 150 FVNG+LG+ + P LR Q Sbjct 124 FVNGLLGRFKELKPSLRRGEQ 144 >gi|284991570|ref|YP_003410124.1| NusB antitermination factor [Geodermatophilus obscurus DSM 43160] gi|284064815|gb|ADB75753.1| NusB antitermination factor [Geodermatophilus obscurus DSM 43160] Length=135 Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 71/132 (54%), Positives = 94/132 (72%), Gaps = 7/132 (5%) Query 9 GRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAK-PDIARLHPYTAAVARGVSEHAA 67 R +ARKRAV +L+EA++RG E++ R ALA PD + + GV+EHAA Sbjct 3 ARSKARKRAVDVLYEADLRGSDPLELLRERVALASPPIPD------HAVRLVEGVAEHAA 56 Query 68 HIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDS 127 +D+LI H RGW++ RLP VDRAILR++V+ELL DVP+ VV+DEAV+LA+ LSTDDS Sbjct 57 RVDELIDRHARGWSIHRLPDVDRAILRMAVFELLWVDDVPDAVVIDEAVELARSLSTDDS 116 Query 128 PGFVNGVLGQVM 139 P +VNGVLG V+ Sbjct 117 PAYVNGVLGGVL 128 >gi|239917765|ref|YP_002957323.1| transcription antitermination factor NusB [Micrococcus luteus NCTC 2665] gi|239838972|gb|ACS30769.1| transcription antitermination factor NusB [Micrococcus luteus NCTC 2665] Length=150 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 67/144 (47%), Positives = 95/144 (66%), Gaps = 5/144 (3%) Query 4 RKPVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVS 63 ++ R ++R+RAV +LFEAE RG + +E + TR D+ +++ YT + GV Sbjct 12 KRGTTARSRSRQRAVEILFEAEQRGSTVSEGIRTR----RESTDL-QVNAYTQRLVEGVI 66 Query 64 EHAAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELS 123 +D+ ++++ RGW+LDR+PAVDRAILRV WELL DVP+ V + EAV LA +LS Sbjct 67 ADQERLDEALSSYSRGWSLDRMPAVDRAILRVGAWELLFQDDVPDAVAISEAVALAAQLS 126 Query 124 TDDSPGFVNGVLGQVMLVTPQLRA 147 TDDSP FVNG+LG++ V P L A Sbjct 127 TDDSPEFVNGLLGRLQQVKPTLLA 150 >gi|257055582|ref|YP_003133414.1| transcription antitermination factor NusB [Saccharomonospora viridis DSM 43017] gi|256585454|gb|ACU96587.1| transcription antitermination factor NusB [Saccharomonospora viridis DSM 43017] Length=153 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 66/143 (47%), Positives = 94/143 (66%), Gaps = 4/143 (2%) Query 4 RKPVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVS 63 R+ R +R+RAV LL+EA +R A ++ R PD+ + YT + GVS Sbjct 12 RRGTFSRRASRQRAVELLYEAALRKTDPATLMSERLG----SPDVDPISDYTITLVEGVS 67 Query 64 EHAAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELS 123 E+ ID+L+ + +GW+L+R+P VD A+LRV ++ELL DVP+PV +DEAV +AK+LS Sbjct 68 ENRERIDELLAEYAQGWSLERMPPVDLAVLRVGLYELLWLDDVPDPVAIDEAVGIAKQLS 127 Query 124 TDDSPGFVNGVLGQVMLVTPQLR 146 TDDSP FVNGVLG++ V +LR Sbjct 128 TDDSPRFVNGVLGRIGTVAERLR 150 >gi|134098647|ref|YP_001104308.1| NusB antitermination factor [Saccharopolyspora erythraea NRRL 2338] gi|291003667|ref|ZP_06561640.1| NusB antitermination factor [Saccharopolyspora erythraea NRRL 2338] gi|166918811|sp|A4FBF8.1|NUSB_SACEN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|133911270|emb|CAM01383.1| NusB antitermination factor [Saccharopolyspora erythraea NRRL 2338] Length=148 Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 68/148 (46%), Positives = 98/148 (67%), Gaps = 5/148 (3%) Query 10 RHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAHI 69 R++ARKRAV +L+EA++RG A ++ R PD+ ++ YT + GV+ + I Sbjct 4 RNKARKRAVDVLYEADLRGEDAVTLLSGRVG----SPDLPPVNEYTVTLVEGVTANRQRI 59 Query 70 DDLITAHLRGWTLDRLPAVDRAILRVSVWELL-HAADVPEPVVVDEAVQLAKELSTDDSP 128 D+L+ H GWTL R+PAVDRA+LR+ ++ELL + DVP V +DEAV+L K LSTDDSP Sbjct 60 DELLVEHAEGWTLARMPAVDRAVLRLGLYELLWRSDDVPPAVAIDEAVELVKALSTDDSP 119 Query 129 GFVNGVLGQVMLVTPQLRAAAQAVRGGA 156 FVNGVLG++ + +LR+ + GA Sbjct 120 RFVNGVLGRIAGIGDRLRSTLRGANPGA 147 Lambda K H 0.320 0.133 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 130065254832 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40