BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2536
Length=230
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609673|ref|NP_217052.1| transmembrane protein [Mycobacteriu... 458 3e-127
gi|15842070|ref|NP_337107.1| hypothetical protein MT2611 [Mycoba... 457 4e-127
gi|308372330|ref|ZP_07428260.2| conserved membrane protein [Myco... 448 3e-124
gi|183982192|ref|YP_001850483.1| transmembrane protein [Mycobact... 288 3e-76
gi|118617382|ref|YP_905714.1| transmembrane protein [Mycobacteri... 285 4e-75
gi|240170735|ref|ZP_04749394.1| transmembrane protein [Mycobacte... 279 2e-73
gi|342858642|ref|ZP_08715297.1| hypothetical protein MCOL_07191 ... 271 5e-71
gi|296170774|ref|ZP_06852346.1| conserved hypothetical protein [... 267 7e-70
gi|41407193|ref|NP_960029.1| hypothetical protein MAP1095c [Myco... 266 2e-69
gi|118465973|ref|YP_882595.1| hypothetical protein MAV_3414 [Myc... 257 1e-66
gi|254821802|ref|ZP_05226803.1| hypothetical protein MintA_17852... 247 1e-63
gi|15827182|ref|NP_301445.1| hypothetical protein ML0520 [Mycoba... 247 1e-63
gi|120403634|ref|YP_953463.1| hypothetical protein Mvan_2649 [My... 228 5e-58
gi|108799323|ref|YP_639520.1| hypothetical protein Mmcs_2356 [My... 207 9e-52
gi|126434981|ref|YP_001070672.1| hypothetical protein Mjls_2397 ... 206 2e-51
gi|333990971|ref|YP_004523585.1| transmembrane protein [Mycobact... 190 1e-46
gi|145224336|ref|YP_001135014.1| hypothetical protein Mflv_3754 ... 189 3e-46
gi|118471998|ref|YP_887350.1| hypothetical protein MSMEG_3032 [M... 188 7e-46
gi|169629923|ref|YP_001703572.1| hypothetical protein MAB_2839 [... 145 3e-33
gi|325672556|ref|ZP_08152252.1| hypothetical protein HMPREF0724_... 108 6e-22
gi|262202258|ref|YP_003273466.1| hypothetical protein Gbro_2328 ... 102 4e-20
gi|226306482|ref|YP_002766442.1| hypothetical protein RER_29950 ... 94.4 1e-17
gi|312139560|ref|YP_004006896.1| integral membrane protein [Rhod... 88.2 8e-16
gi|54025610|ref|YP_119852.1| hypothetical protein nfa36400 [Noca... 85.5 5e-15
gi|226366333|ref|YP_002784116.1| hypothetical protein ROP_69240 ... 82.0 6e-14
gi|343924543|ref|ZP_08764091.1| hypothetical protein GOALK_017_0... 81.6 9e-14
gi|326382151|ref|ZP_08203843.1| hypothetical protein SCNU_04366 ... 81.3 1e-13
gi|111024093|ref|YP_707065.1| hypothetical protein RHA1_ro07143 ... 80.5 2e-13
gi|229493664|ref|ZP_04387449.1| conserved hypothetical protein [... 80.5 2e-13
gi|333919517|ref|YP_004493098.1| hypothetical protein AS9A_1849 ... 72.0 7e-11
gi|296139945|ref|YP_003647188.1| hypothetical protein Tpau_2240 ... 60.1 2e-07
gi|225558971|gb|EEH07254.1| conserved hypothetical protein [Ajel... 41.2 0.11
gi|154275240|ref|XP_001538471.1| conserved hypothetical protein ... 39.3 0.41
gi|291234799|ref|XP_002737332.1| PREDICTED: hypothetical protein... 39.3 0.42
gi|325088027|gb|EGC41337.1| copper-transporting ATPase [Ajellomy... 38.9 0.58
gi|240281892|gb|EER45395.1| copper-transporting ATPase [Ajellomy... 38.9 0.60
gi|316939674|gb|ADU73708.1| cellulosome anchoring protein cohesi... 37.4 1.8
gi|125975557|ref|YP_001039467.1| cellulosome anchoring protein, ... 37.4 1.8
gi|296881|emb|CAA47841.1| S-layer protein [Clostridium thermocel... 37.4 1.9
gi|44891709|tpg|DAA02258.1| TPA: TPA_exp: S6 sporozoite-induced ... 37.4 1.9
gi|266620637|ref|ZP_06113572.1| putative von Willebrand factor t... 37.0 2.4
gi|26246823|ref|NP_752863.1| hypothetical protein c0933 [Escheri... 36.6 2.9
gi|147899185|ref|NP_001088272.1| major facilitator superfamily d... 36.6 3.2
gi|167590071|ref|ZP_02382459.1| multi-sensor hybrid histidine ki... 36.2 3.7
gi|326794039|ref|YP_004311859.1| polysaccharide biosynthesis pro... 35.4 6.7
gi|227432535|ref|ZP_03914519.1| branched chain amino acid ABC su... 35.4 7.3
>gi|15609673|ref|NP_217052.1| transmembrane protein [Mycobacterium tuberculosis H37Rv]
gi|31793718|ref|NP_856211.1| transmembrane protein [Mycobacterium bovis AF2122/97]
gi|121638420|ref|YP_978644.1| putative transmembrane protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
66 more sequence titles
Length=230
Score = 458 bits (1178), Expect = 3e-127, Method: Compositional matrix adjust.
Identities = 230/230 (100%), Positives = 230/230 (100%), Gaps = 0/230 (0%)
Query 1 MTNWMLRGLAFAAAMVVLRLFQGALINAWQMLSGLISLVLLLLFAIGGVVWGVMDGRADA 60
MTNWMLRGLAFAAAMVVLRLFQGALINAWQMLSGLISLVLLLLFAIGGVVWGVMDGRADA
Sbjct 1 MTNWMLRGLAFAAAMVVLRLFQGALINAWQMLSGLISLVLLLLFAIGGVVWGVMDGRADA 60
Query 61 KASPDPDRRQDLAMTWLLAGLVAGALSGAVAWLISLFYKAIYTGGPINELTTFAAFTALI 120
KASPDPDRRQDLAMTWLLAGLVAGALSGAVAWLISLFYKAIYTGGPINELTTFAAFTALI
Sbjct 61 KASPDPDRRQDLAMTWLLAGLVAGALSGAVAWLISLFYKAIYTGGPINELTTFAAFTALI 120
Query 121 VFLVGIVGVAVGRWLVDRQLAKAPVRHHGLAAEHERAADTDVFSAVRADDSPTGEMQVAQ 180
VFLVGIVGVAVGRWLVDRQLAKAPVRHHGLAAEHERAADTDVFSAVRADDSPTGEMQVAQ
Sbjct 121 VFLVGIVGVAVGRWLVDRQLAKAPVRHHGLAAEHERAADTDVFSAVRADDSPTGEMQVAQ 180
Query 181 PEAQTAAVATVEREAPTEVIRTTESDTPTEVIRTDTEADQTKPGDEPKKD 230
PEAQTAAVATVEREAPTEVIRTTESDTPTEVIRTDTEADQTKPGDEPKKD
Sbjct 181 PEAQTAAVATVEREAPTEVIRTTESDTPTEVIRTDTEADQTKPGDEPKKD 230
>gi|15842070|ref|NP_337107.1| hypothetical protein MT2611 [Mycobacterium tuberculosis CDC1551]
gi|253798384|ref|YP_003031385.1| hypothetical protein TBMG_01437 [Mycobacterium tuberculosis KZN
1435]
gi|254232658|ref|ZP_04925985.1| hypothetical protein TBCG_02477 [Mycobacterium tuberculosis C]
gi|298526010|ref|ZP_07013419.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
gi|13882351|gb|AAK46921.1| hypothetical protein MT2611 [Mycobacterium tuberculosis CDC1551]
gi|124601717|gb|EAY60727.1| hypothetical protein TBCG_02477 [Mycobacterium tuberculosis C]
gi|253319887|gb|ACT24490.1| conserved membrane protein [Mycobacterium tuberculosis KZN 1435]
gi|298495804|gb|EFI31098.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
Length=232
Score = 457 bits (1177), Expect = 4e-127, Method: Compositional matrix adjust.
Identities = 230/230 (100%), Positives = 230/230 (100%), Gaps = 0/230 (0%)
Query 1 MTNWMLRGLAFAAAMVVLRLFQGALINAWQMLSGLISLVLLLLFAIGGVVWGVMDGRADA 60
MTNWMLRGLAFAAAMVVLRLFQGALINAWQMLSGLISLVLLLLFAIGGVVWGVMDGRADA
Sbjct 3 MTNWMLRGLAFAAAMVVLRLFQGALINAWQMLSGLISLVLLLLFAIGGVVWGVMDGRADA 62
Query 61 KASPDPDRRQDLAMTWLLAGLVAGALSGAVAWLISLFYKAIYTGGPINELTTFAAFTALI 120
KASPDPDRRQDLAMTWLLAGLVAGALSGAVAWLISLFYKAIYTGGPINELTTFAAFTALI
Sbjct 63 KASPDPDRRQDLAMTWLLAGLVAGALSGAVAWLISLFYKAIYTGGPINELTTFAAFTALI 122
Query 121 VFLVGIVGVAVGRWLVDRQLAKAPVRHHGLAAEHERAADTDVFSAVRADDSPTGEMQVAQ 180
VFLVGIVGVAVGRWLVDRQLAKAPVRHHGLAAEHERAADTDVFSAVRADDSPTGEMQVAQ
Sbjct 123 VFLVGIVGVAVGRWLVDRQLAKAPVRHHGLAAEHERAADTDVFSAVRADDSPTGEMQVAQ 182
Query 181 PEAQTAAVATVEREAPTEVIRTTESDTPTEVIRTDTEADQTKPGDEPKKD 230
PEAQTAAVATVEREAPTEVIRTTESDTPTEVIRTDTEADQTKPGDEPKKD
Sbjct 183 PEAQTAAVATVEREAPTEVIRTTESDTPTEVIRTDTEADQTKPGDEPKKD 232
>gi|308372330|ref|ZP_07428260.2| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
gi|308379231|ref|ZP_07485584.2| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
gi|308333628|gb|EFP22479.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
gi|308357694|gb|EFP46545.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
gi|339295416|gb|AEJ47527.1| hypothetical protein CCDC5079_2337 [Mycobacterium tuberculosis
CCDC5079]
gi|339299036|gb|AEJ51146.1| hypothetical protein CCDC5180_2309 [Mycobacterium tuberculosis
CCDC5180]
Length=226
Score = 448 bits (1152), Expect = 3e-124, Method: Compositional matrix adjust.
Identities = 226/226 (100%), Positives = 226/226 (100%), Gaps = 0/226 (0%)
Query 5 MLRGLAFAAAMVVLRLFQGALINAWQMLSGLISLVLLLLFAIGGVVWGVMDGRADAKASP 64
MLRGLAFAAAMVVLRLFQGALINAWQMLSGLISLVLLLLFAIGGVVWGVMDGRADAKASP
Sbjct 1 MLRGLAFAAAMVVLRLFQGALINAWQMLSGLISLVLLLLFAIGGVVWGVMDGRADAKASP 60
Query 65 DPDRRQDLAMTWLLAGLVAGALSGAVAWLISLFYKAIYTGGPINELTTFAAFTALIVFLV 124
DPDRRQDLAMTWLLAGLVAGALSGAVAWLISLFYKAIYTGGPINELTTFAAFTALIVFLV
Sbjct 61 DPDRRQDLAMTWLLAGLVAGALSGAVAWLISLFYKAIYTGGPINELTTFAAFTALIVFLV 120
Query 125 GIVGVAVGRWLVDRQLAKAPVRHHGLAAEHERAADTDVFSAVRADDSPTGEMQVAQPEAQ 184
GIVGVAVGRWLVDRQLAKAPVRHHGLAAEHERAADTDVFSAVRADDSPTGEMQVAQPEAQ
Sbjct 121 GIVGVAVGRWLVDRQLAKAPVRHHGLAAEHERAADTDVFSAVRADDSPTGEMQVAQPEAQ 180
Query 185 TAAVATVEREAPTEVIRTTESDTPTEVIRTDTEADQTKPGDEPKKD 230
TAAVATVEREAPTEVIRTTESDTPTEVIRTDTEADQTKPGDEPKKD
Sbjct 181 TAAVATVEREAPTEVIRTTESDTPTEVIRTDTEADQTKPGDEPKKD 226
>gi|183982192|ref|YP_001850483.1| transmembrane protein [Mycobacterium marinum M]
gi|183175518|gb|ACC40628.1| conserved transmembrane protein [Mycobacterium marinum M]
Length=252
Score = 288 bits (738), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 163/217 (76%), Positives = 178/217 (83%), Gaps = 8/217 (3%)
Query 1 MTNWMLRGLAFAAAMVVLRLFQGALINAWQMLSGLISLVLLLLFAIGGVVWGVMDGRADA 60
MTNWMLRGLAFAAAMVVLRLFQGALINAWQ +GLISLVLLLL+ I +VWG +DGRADA
Sbjct 1 MTNWMLRGLAFAAAMVVLRLFQGALINAWQTQAGLISLVLLLLYVIAVIVWGTLDGRADA 60
Query 61 KASPDPDRRQDLAMTWLLAGLVAGALSGAVAWLISLFYKAIYTGGPINELTTFAAFTALI 120
KA+PDPDRR DLAMTWL+AGLVAG LSGAVAW+I+LFYK IY GG INE+TTFAAFTALI
Sbjct 61 KANPDPDRRADLAMTWLVAGLVAGILSGAVAWIIALFYKGIYVGGLINEVTTFAAFTALI 120
Query 121 VFLVGIVGVAVGRWLVDRQLAKAPVRHHGLAAEHERAADTDVFSAVRADDSPTGEMQVAQ 180
+FL GI GVAVGRW VDR AP H G ADTDVF+AVRADDSPTGEM VA
Sbjct 121 IFLPGISGVAVGRWRVDRNAPPAPT-HDGTGGR----ADTDVFAAVRADDSPTGEMPVAS 175
Query 181 PEAQT---AAVATVEREAPTEVIRTTESDTPTEVIRT 214
+AQ AVATVER+APTEVI TTE ++PTEVIRT
Sbjct 176 NQAQATAPTAVATVERDAPTEVIATTEQESPTEVIRT 212
>gi|118617382|ref|YP_905714.1| transmembrane protein [Mycobacterium ulcerans Agy99]
gi|118569492|gb|ABL04243.1| conserved transmembrane protein [Mycobacterium ulcerans Agy99]
Length=252
Score = 285 bits (728), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 161/217 (75%), Positives = 177/217 (82%), Gaps = 8/217 (3%)
Query 1 MTNWMLRGLAFAAAMVVLRLFQGALINAWQMLSGLISLVLLLLFAIGGVVWGVMDGRADA 60
MTNWMLRGLAFAAAMVVLRLFQGALINAWQ +GLISLVLLLL+ I +VWG +DGRADA
Sbjct 1 MTNWMLRGLAFAAAMVVLRLFQGALINAWQTQAGLISLVLLLLYVIAVIVWGTLDGRADA 60
Query 61 KASPDPDRRQDLAMTWLLAGLVAGALSGAVAWLISLFYKAIYTGGPINELTTFAAFTALI 120
KA+PDPDRR DLAMTWL+AGLVAG LSGAVAW+I+LFYK+IY GG INE+TTFAAFTALI
Sbjct 61 KANPDPDRRADLAMTWLVAGLVAGILSGAVAWIIALFYKSIYVGGLINEVTTFAAFTALI 120
Query 121 VFLVGIVGVAVGRWLVDRQLAKAPVRHHGLAAEHERAADTDVFSAVRADDSPTGEMQVAQ 180
+FL GI GVAVGRW VDR P H G ADTDVF+AVRADDSPTGEM VA
Sbjct 121 IFLPGISGVAVGRWRVDRNAPPVPT-HDGTGGR----ADTDVFAAVRADDSPTGEMPVAS 175
Query 181 PEAQT---AAVATVEREAPTEVIRTTESDTPTEVIRT 214
+AQ AVATVER+APTEVI TTE ++PTEVI T
Sbjct 176 NQAQATAPTAVATVERDAPTEVIATTEQESPTEVICT 212
>gi|240170735|ref|ZP_04749394.1| transmembrane protein [Mycobacterium kansasii ATCC 12478]
Length=246
Score = 279 bits (714), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 154/251 (62%), Positives = 177/251 (71%), Gaps = 30/251 (11%)
Query 5 MLRGLAFAAAMVVLRLFQGALINAWQMLSGLISLVLLLLFAIGGVVWGVMDGRADAKASP 64
MLRGL FAAAMVV+RLFQGALINAWQ +GLISL LL L+ I VVWG++DG ADAKA+P
Sbjct 1 MLRGLVFAAAMVVVRLFQGALINAWQTQAGLISLALLALYIIAVVVWGLIDGNADAKANP 60
Query 65 DPDRRQDLAMTWLLAGLVAGALSGAVAWLISLFYKAIYTGGPINELTTFAAFTALIVFLV 124
DPDRR+DLAMTWLLAGL AG LSGAV WLI++FY +Y GG I+ELTTFAAFTALIVFL
Sbjct 61 DPDRREDLAMTWLLAGLAAGVLSGAVTWLIAVFYNGVYAGGLISELTTFAAFTALIVFLF 120
Query 125 GIVGVAVGRWLVDRQLAKAPVRHHGLAAEHERAADTDVFSAVRADDSPTGEMQVAQPEAQ 184
I GVAV RW +DR A P H G DTDVFSAVRAD++PTGE+ + E+Q
Sbjct 121 AITGVAVARWRIDRN-APPPPTHDGSRGR----GDTDVFSAVRADETPTGEIHAPRSESQ 175
Query 185 T---AAVATVEREAPTEVIRTTESDTPTEVIRT-------------DTEA---------D 219
AVATVEREAPTE I T E ++PTEVIRT D+EA D
Sbjct 176 ATAPTAVATVEREAPTETIATAEQESPTEVIRTGESEAPTETIPTSDSEARTEAIRLDHD 235
Query 220 QTKPGDEPKKD 230
+TKP +PK+D
Sbjct 236 ETKPDHKPKQD 246
>gi|342858642|ref|ZP_08715297.1| hypothetical protein MCOL_07191 [Mycobacterium colombiense CECT
3035]
gi|342134346|gb|EGT87526.1| hypothetical protein MCOL_07191 [Mycobacterium colombiense CECT
3035]
Length=232
Score = 271 bits (693), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 154/239 (65%), Positives = 172/239 (72%), Gaps = 22/239 (9%)
Query 5 MLRGLAFAAAMVVLRLFQGALINAWQMLSGLISLVLLLLFAIGGVVWGVMDGRADAKASP 64
MLRGL +AAAMVV+RLFQGALINAWQ + L S+ LLLLF IG VWGV+DGR DA +P
Sbjct 1 MLRGLVYAAAMVVVRLFQGALINAWQTQATLFSVTLLLLFVIGVAVWGVLDGRRDAIDNP 60
Query 65 DPDRRQDLAMTWLLAGLVAGALSGAVAWLISLFYKAIYTGGPINELTTFAAFTALIVFLV 124
DPDRR DLAMTWLLAGLVAG LSGAV+WLI+L Y +YTGG +NE+TTFAAFTAL VFL
Sbjct 61 DPDRRGDLAMTWLLAGLVAGVLSGAVSWLIALVYNGLYTGGLLNEVTTFAAFTALCVFLP 120
Query 125 GIVGVAVGRWLVDRQLAKAPVRHHGLAAEHERAADTDVFSAVRADDSPTGEMQV----AQ 180
GI+GV +GRW VDR P R G E ADTDVFSAVRADD+PTGE+ AQ
Sbjct 121 GIIGVTIGRWRVDRN---PPPRRPG---TDEDRADTDVFSAVRADDAPTGEIPAQTSGAQ 174
Query 181 PEAQTAAVATVEREAPTEVIRTTES----------DTPTEVIRTDTEADQTKPGDEPKK 229
EA+TAAVAT EREAPT+ + TTES D TEVIRT E TKPG E K
Sbjct 175 AEARTAAVATAEREAPTDSVATTESPTETIAKPEDDPKTEVIRTGDE--HTKPGTEHDK 231
>gi|296170774|ref|ZP_06852346.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295894589|gb|EFG74326.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=235
Score = 267 bits (683), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 157/235 (67%), Positives = 177/235 (76%), Gaps = 12/235 (5%)
Query 1 MTNWMLRGLAFAAAMVVLRLFQGALINAWQMLSGLISLVLLLLFAIGGVVWGVMDGRADA 60
M +WMLRGL +AAAMVV+RLFQGALINAWQ +GL S+VLLLLF IG VWGV+DGRADA
Sbjct 1 MRSWMLRGLVYAAAMVVVRLFQGALINAWQTQAGLFSVVLLLLFIIGVAVWGVLDGRADA 60
Query 61 KASPDPDRRQDLAMTWLLAGLVAGALSGAVAWLISLFYKAIYTGGPINELTTFAAFTALI 120
A+PDPDRR+DLAMTWLLAGLVAG LSGAV+WLI+L YK +YTGG INELTTFAAFTAL
Sbjct 61 IANPDPDRRRDLAMTWLLAGLVAGVLSGAVSWLIALVYKGLYTGGLINELTTFAAFTALC 120
Query 121 VFLVGIVGVAVGRWLVDRQLAKAPVRHHGLAAEHERAADTDVFSAVRADDSPTGEMQV-- 178
VFL GI+GV VGRW VDR P R G E ADTDVFSAVR DD+PTGE+
Sbjct 121 VFLPGIIGVTVGRWRVDRN---PPPRRPGT---DEERADTDVFSAVRGDDAPTGEIPAAG 174
Query 179 AQPEAQTAAVATVEREAPTEVIRTTESDTPTEVI---RTDTEADQTKP-GDEPKK 229
AQ E +TAAVAT EREAPTE + T E + PTE I D + + +P GDE K
Sbjct 175 AQHEERTAAVATAEREAPTEAVGTAEQEAPTETIAKTEDDPKTEVIRPVGDEHTK 229
>gi|41407193|ref|NP_960029.1| hypothetical protein MAP1095c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|254775859|ref|ZP_05217375.1| hypothetical protein MaviaA2_14485 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|41395544|gb|AAS03412.1| hypothetical protein MAP_1095c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=223
Score = 266 bits (680), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 157/233 (68%), Positives = 174/233 (75%), Gaps = 15/233 (6%)
Query 1 MTNWMLRGLAFAAAMVVLRLFQGALINAWQMLSGLISLVLLLLFAIGGVVWGVMDGRADA 60
M+NWMLRGL +AAAMVV+RLFQGALINAWQ +GL S+VLLLLF I VWGV DGRADA
Sbjct 1 MSNWMLRGLVYAAAMVVVRLFQGALINAWQTQAGLFSVVLLLLFVIAVAVWGVFDGRADA 60
Query 61 KASPDPDRRQDLAMTWLLAGLVAGALSGAVAWLISLFYKAIYTGGPINELTTFAAFTALI 120
A+PDPDRR DLAMTWLLAGLVAG LSGAV+WLI+L YK +YTGG INE+TTFAAFTAL
Sbjct 61 IANPDPDRRGDLAMTWLLAGLVAGVLSGAVSWLIALVYKGLYTGGLINEVTTFAAFTALC 120
Query 121 VFLVGIVGVAVGRWLVDRQLAKAPVRHHGLAAEHERAADTDVFSAVRADDSPTGEMQV-- 178
VFL GI+GV +GRW VDR P R G + ADTDVFSAVR DD+PTGE+
Sbjct 121 VFLPGIIGVTIGRWRVDRN---PPPRRPG---HDDERADTDVFSAVRGDDAPTGEIPAAG 174
Query 179 AQPEAQTAAVATVEREA--PTEVIRTTESDTPTEVIRTDTEADQTKPGDEPKK 229
AQ EA TAAVAT EREA PTE I + D TEVIRT+ E PG EP K
Sbjct 175 AQTEAHTAAVATAEREAESPTETIPSAGDDPKTEVIRTEPE-----PGGEPGK 222
>gi|118465973|ref|YP_882595.1| hypothetical protein MAV_3414 [Mycobacterium avium 104]
gi|118167260|gb|ABK68157.1| conserved hypothetical protein [Mycobacterium avium 104]
gi|336461554|gb|EGO40421.1| hypothetical protein MAPs_29660 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=219
Score = 257 bits (656), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 154/229 (68%), Positives = 170/229 (75%), Gaps = 15/229 (6%)
Query 5 MLRGLAFAAAMVVLRLFQGALINAWQMLSGLISLVLLLLFAIGGVVWGVMDGRADAKASP 64
MLRGL +AAAMVV+RLFQGALINAWQ +GL S+VLLLLF I VWGV DGRADA A+P
Sbjct 1 MLRGLVYAAAMVVVRLFQGALINAWQTQAGLFSVVLLLLFVIAVAVWGVFDGRADAIANP 60
Query 65 DPDRRQDLAMTWLLAGLVAGALSGAVAWLISLFYKAIYTGGPINELTTFAAFTALIVFLV 124
DPDRR DLAMTWLLAGLVAG LSGAV+WLI+L YK +YTGG INE+TTFAAFTAL VFL
Sbjct 61 DPDRRGDLAMTWLLAGLVAGVLSGAVSWLIALVYKGLYTGGLINEVTTFAAFTALCVFLP 120
Query 125 GIVGVAVGRWLVDRQLAKAPVRHHGLAAEHERAADTDVFSAVRADDSPTGEMQV--AQPE 182
GI+GV +GRW VDR P R G + ADTDVFSAVR DD+PTGE+ AQ E
Sbjct 121 GIIGVTIGRWRVDRN---PPPRRPG---HDDERADTDVFSAVRGDDAPTGEIPAAGAQTE 174
Query 183 AQTAAVATVEREA--PTEVIRTTESDTPTEVIRTDTEADQTKPGDEPKK 229
A TAAVAT EREA PTE I + D TEVIRT+ E PG EP K
Sbjct 175 AHTAAVATAEREAESPTETIPSAGDDPKTEVIRTEPE-----PGGEPGK 218
>gi|254821802|ref|ZP_05226803.1| hypothetical protein MintA_17852 [Mycobacterium intracellulare
ATCC 13950]
Length=228
Score = 247 bits (630), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 154/234 (66%), Positives = 174/234 (75%), Gaps = 10/234 (4%)
Query 1 MTNWMLRGLAFAAAMVVLRLFQGALINAWQMLSGLISLVLLLLFAIGGVVWGVMDGRADA 60
M+NWMLRGL +AAAMVV+RLFQGALINAWQ +GL S+VLLLLF IG VWGV+DGRADA
Sbjct 1 MSNWMLRGLVYAAAMVVVRLFQGALINAWQTQAGLFSVVLLLLFVIGVAVWGVLDGRADA 60
Query 61 KASPDPDRRQDLAMTWLLAGLVAGALSGAVAWLISLFYKAIYTGGPINELTTFAAFTALI 120
A+PDPDRR DLAMTWLLAGLVAG LSGAV+WLI+L Y +YTGG INE+TTFAAFTAL
Sbjct 61 IANPDPDRRGDLAMTWLLAGLVAGLLSGAVSWLIALVYTGLYTGGLINEVTTFAAFTALC 120
Query 121 VFLVGIVGVAVGRWLVDRQLAKAPVRHHGLAAEHERAADTDVFSAVRADDSPTGEMQV-- 178
VFL GI+GV +GRW VDR P R G E ADTDVFSAVRADD+PTGE+
Sbjct 121 VFLPGIIGVTIGRWRVDRN---PPPRRPGT---DEERADTDVFSAVRADDAPTGEIPAAG 174
Query 179 AQPEAQTAAVATVEREAPTEVIRTTESDTPTEVIRTDTEADQTKPG--DEPKKD 230
AQ E +T+AVAT ERE PTE + T ES T T D + P +EPKKD
Sbjct 175 AQTEERTSAVATAEREGPTETMPTEESPTETIAKTEDDPKTEVIPSAREEPKKD 228
>gi|15827182|ref|NP_301445.1| hypothetical protein ML0520 [Mycobacterium leprae TN]
gi|221229660|ref|YP_002503076.1| hypothetical protein MLBr_00520 [Mycobacterium leprae Br4923]
gi|13092730|emb|CAC30028.1| putative membrane protein [Mycobacterium leprae]
gi|219932767|emb|CAR70613.1| putative membrane protein [Mycobacterium leprae Br4923]
Length=202
Score = 247 bits (630), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 127/201 (64%), Positives = 152/201 (76%), Gaps = 5/201 (2%)
Query 1 MTNWMLRGLAFAAAMVVLRLFQGALINAWQMLSGLISLVLLLLFAIGGVVWGVMDGRADA 60
M NWMLRGL FAA M+V+RL QG +IN WQ S LIS+VLL +F I VVW DGRADA
Sbjct 1 MNNWMLRGLVFAALMIVVRLMQGTMINVWQAQSVLISVVLLAVFIIAVVVWAARDGRADA 60
Query 61 KASPDPDRRQDLAMTWLLAGLVAGALSGAVAWLISLFYKAIYTGGPINELTTFAAFTALI 120
A+PDPDRR+DLAMTWLL G++ G LS AVAW+ISL Y IYTGG ++ELTTF+AFTALI
Sbjct 61 IANPDPDRRRDLAMTWLLTGILVGVLSDAVAWVISLLYNGIYTGGLVSELTTFSAFTALI 120
Query 121 VFLVGIVGVAVGRWLVDRQLAKAPVRHHGLAAEHERAADTDVFSAVRA-DDSPTGEMQVA 179
VFL GI+GVA GRW VDR+ PV H + ++ AD++VF+AV DD+PTGE+ A
Sbjct 121 VFLTGIIGVACGRWRVDRR--SPPVPEHSRSGQNR--ADSNVFAAVCTDDDTPTGELSAA 176
Query 180 QPEAQTAAVATVEREAPTEVI 200
Q + QTAAVAT E EAPTE+I
Sbjct 177 QTKEQTAAVATAESEAPTEII 197
>gi|120403634|ref|YP_953463.1| hypothetical protein Mvan_2649 [Mycobacterium vanbaalenii PYR-1]
gi|119956452|gb|ABM13457.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=202
Score = 228 bits (581), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 122/212 (58%), Positives = 154/212 (73%), Gaps = 15/212 (7%)
Query 1 MTNWMLRGLAFAAAMVVLRLFQGALINAWQMLSGLISLVLLLLFAIGGVVWGVMDGRADA 60
M+ W+LRGL FAA MV++RL QGALINAW+ +GLIS++L++ +AI +VWG +DGRADA
Sbjct 1 MSKWLLRGLVFAALMVIVRLLQGALINAWETKAGLISVILVVAYAIVALVWGYVDGRADA 60
Query 61 KASPDPDRRQDLAMTWLLAGLVAGALSGAVAWLISLFYKAIYTGGPINELTTFAAFTALI 120
+ +PDPDRRQDLAM WLLAGL AG +SGAVAW I +FYK +Y G INELTTFAAFTAL+
Sbjct 61 RDNPDPDRRQDLAMAWLLAGLFAGVVSGAVAWFIGIFYKNLYVEGLINELTTFAAFTALL 120
Query 121 VFLVGIVGVAVGRWLVDRQLAKAPVRHHGLAAEHERAADTDVFSAVRADDS-----PTGE 175
VF+ I+GVA+G WLVDR+ + P R G + ADTDVF+AVR DDS PTG
Sbjct 121 VFIAAIIGVALGHWLVDRKTPEQPRRREG----DDDRADTDVFAAVR-DDSGYETYPTG- 174
Query 176 MQVAQPEAQTAAVATVEREAPTEVIRTTESDT 207
A+PE QT+ VA E ++ T + +SD
Sbjct 175 ---AEPEQQTSPVALAEDDS-TRPVDKRDSDN 202
>gi|108799323|ref|YP_639520.1| hypothetical protein Mmcs_2356 [Mycobacterium sp. MCS]
gi|119868439|ref|YP_938391.1| hypothetical protein Mkms_2403 [Mycobacterium sp. KMS]
gi|108769742|gb|ABG08464.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|119694528|gb|ABL91601.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=185
Score = 207 bits (527), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 105/188 (56%), Positives = 133/188 (71%), Gaps = 12/188 (6%)
Query 1 MTNWMLRGLAFAAAMVVLRLFQGALINAWQMLSGLISLVLLLLFAIGGVVWGVMDGRADA 60
M+ W+LRGL FAA MV++RL QGA+IN W+ + IS+VL+ ++A+ WG +DGR DA
Sbjct 1 MSKWLLRGLVFAALMVIVRLLQGAMINTWETRAATISIVLVSVYALVAFAWGFVDGRRDA 60
Query 61 KASPDPDRRQDLAMTWLLAGLVAGALSGAVAWLISLFYKAIYTGGPINELTTFAAFTALI 120
+ +PDPDRR DLAMTWLL GL AG +SG VAWLI +FYK +Y +NELTTFAAFTAL+
Sbjct 61 RQNPDPDRRSDLAMTWLLTGLFAGIVSGFVAWLIGVFYKNLYVEALLNELTTFAAFTALL 120
Query 121 VFLVGIVGVAVGRWLVDRQLAKAPVRHHGLAAEHERAADTDVFSAVR---------ADDS 171
F++ I+GVA+GRWLVDR+ P + HG E + ADTDVF+AVR DDS
Sbjct 121 TFVLAIIGVALGRWLVDRKTPDEPRKRHG---EDDDRADTDVFAAVRPGGQDGRDGHDDS 177
Query 172 PTGEMQVA 179
PT E Q A
Sbjct 178 PTTEQQRA 185
>gi|126434981|ref|YP_001070672.1| hypothetical protein Mjls_2397 [Mycobacterium sp. JLS]
gi|126234781|gb|ABN98181.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=185
Score = 206 bits (524), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 104/188 (56%), Positives = 133/188 (71%), Gaps = 12/188 (6%)
Query 1 MTNWMLRGLAFAAAMVVLRLFQGALINAWQMLSGLISLVLLLLFAIGGVVWGVMDGRADA 60
M+ W+LRGL FAA MV++RL QGA+IN W+ + IS+VL+ ++A+ WG +DGR DA
Sbjct 1 MSKWLLRGLVFAALMVIVRLLQGAMINTWETRAATISIVLVSVYALVAFAWGFVDGRRDA 60
Query 61 KASPDPDRRQDLAMTWLLAGLVAGALSGAVAWLISLFYKAIYTGGPINELTTFAAFTALI 120
+ +PDPDRR DLAMTWLL GL AG +SG VAWLI +FYK +Y +NELTTFAAFTAL+
Sbjct 61 RQNPDPDRRSDLAMTWLLTGLFAGIVSGFVAWLIGVFYKNLYVEALLNELTTFAAFTALL 120
Query 121 VFLVGIVGVAVGRWLVDRQLAKAPVRHHGLAAEHERAADTDVFSAVR---------ADDS 171
F++ ++GVA+GRWLVDR+ P + HG E + ADTDVF+AVR DDS
Sbjct 121 TFVLALIGVALGRWLVDRKTPDEPRKRHG---EDDDRADTDVFAAVRPGGQDGRDGHDDS 177
Query 172 PTGEMQVA 179
PT E Q A
Sbjct 178 PTTEQQRA 185
>gi|333990971|ref|YP_004523585.1| transmembrane protein [Mycobacterium sp. JDM601]
gi|333486940|gb|AEF36332.1| transmembrane protein [Mycobacterium sp. JDM601]
Length=234
Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 103/178 (58%), Positives = 131/178 (74%), Gaps = 7/178 (3%)
Query 15 MVVLRLFQGALINAWQMLSGLISLVLLLLFAIGGVVWGVMDGRADAKASPDPDRRQDLAM 74
MVV+R+ QG LINA++ +GLISL+L++LFAI +VWG DGRADA+A+PDPDRR DLAM
Sbjct 1 MVVIRMIQGVLINAFEAQAGLISLILMILFAIAVMVWGYSDGRADARANPDPDRRDDLAM 60
Query 75 TWLLAGLVAGALSGAVAWLISLFYKAIYTGGPINELTTFAAFTALIVFLVGIVGVAVGRW 134
TWL AGLVAG +SG V+W+I L KA+Y NELT+FAAFTAL+VF+ + V +GR
Sbjct 61 TWLGAGLVAGLVSGLVSWIIGLVDKALYVSSLFNELTSFAAFTALLVFVTAVAAVTLGRR 120
Query 135 LVDRQLAKAPVRHHGLAAEHERAADTDVFS-----AVRADDSPTGEMQVAQPEAQTAA 187
VD++ KAP RHHGLAA+ E AA TDVF+ AV A+ + T + + A P A TAA
Sbjct 121 RVDKEYEKAPHRHHGLAAQGE-AAPTDVFATVGAPAVAAEQTDTIQTEAA-PHADTAA 176
>gi|145224336|ref|YP_001135014.1| hypothetical protein Mflv_3754 [Mycobacterium gilvum PYR-GCK]
gi|315444668|ref|YP_004077547.1| hypothetical protein Mspyr1_30950 [Mycobacterium sp. Spyr1]
gi|145216822|gb|ABP46226.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
gi|315262971|gb|ADT99712.1| hypothetical protein Mspyr1_30950 [Mycobacterium sp. Spyr1]
Length=205
Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 107/201 (54%), Positives = 140/201 (70%), Gaps = 12/201 (5%)
Query 1 MTNWMLRGLAFAAAMVVLRLFQGALINAWQMLSGLISLVLLLLFAIGGVVWGVMDGRADA 60
M+ W++RGL AA MV++RL QGA+INAW+ +GLIS VL+ +A+ ++WG DGR+DA
Sbjct 1 MSKWLVRGLVLAALMVIVRLLQGAMINAWETKAGLISAVLVAAYAVVALIWGYADGRSDA 60
Query 61 KASPDPDRRQDLAMTWLLAGLVAGALSGAVAWLISLFYKAIYTGGPINELTTFAAFTALI 120
+ +PDPDRR DLAM+WLLAGL AG +SGAVAW I LFYK +Y G INELTTFAAFTAL+
Sbjct 61 RRNPDPDRRDDLAMSWLLAGLFAGVVSGAVAWFIGLFYKNLYVEGLINELTTFAAFTALL 120
Query 121 VFLVGIVGVAVGRWLVDRQLAKAPVRHHGLAAEHERAADTDVFSAVRADDSPTGEMQV-- 178
VF+ I+GVA+G WLVDR KAP + E + ADTDVF+AVR S G +
Sbjct 121 VFISAIIGVALGHWLVDR---KAPAQER--RREDDDRADTDVFAAVRDTGSSEGNSEDYD 175
Query 179 -----AQPEAQTAAVATVERE 194
+ + Q+++VA + E
Sbjct 176 RYADGTESQQQSSSVAVADDE 196
>gi|118471998|ref|YP_887350.1| hypothetical protein MSMEG_3032 [Mycobacterium smegmatis str.
MC2 155]
gi|118173285|gb|ABK74181.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=191
Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 102/169 (61%), Positives = 128/169 (76%), Gaps = 1/169 (0%)
Query 1 MTNWMLRGLAFAAAMVVLRLFQGALINAWQMLSGLISLVLLLLFAIGGVVWGVMDGRADA 60
M+ W+LRG+ FA AMV++RL QGAL+NA + S LL+L+AIG VWGV+DGR DA
Sbjct 1 MSKWLLRGVVFATAMVIVRLLQGALVNASPGNAIWFSTGLLVLYAIGVAVWGVLDGRGDA 60
Query 61 KASPDPDRRQDLAMTWLLAGLVAGALSGAVAWLISLFYKAIYTGGPINELTTFAAFTALI 120
+++PDPDRR DLAMTWLLAGL AG LSGAV+W I LFYK+IYT +NE+TTFAAFTAL+
Sbjct 61 RSNPDPDRRADLAMTWLLAGLAAGILSGAVSWFIGLFYKSIYTESLLNEITTFAAFTALL 120
Query 121 VFLVGIVGVAVGRWLVDRQLAKAPVRHHGLAAEHERAADTDVFSAVRAD 169
FLV + GV +GRW +DR+ HGLAA+ + ADTDVF+AV A+
Sbjct 121 TFLVAVAGVTIGRWTIDRKAPPVTRTRHGLAADDD-RADTDVFAAVSAN 168
>gi|169629923|ref|YP_001703572.1| hypothetical protein MAB_2839 [Mycobacterium abscessus ATCC 19977]
gi|169241890|emb|CAM62918.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=185
Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 82/172 (48%), Positives = 106/172 (62%), Gaps = 9/172 (5%)
Query 2 TNWMLRGLAFAAAMVVLRLFQGALINAWQMLSGLISLVLLLLFAIGGVVWGVMDGRADAK 61
T W+ RG FA MV++R+ QG I+ W+ I++VL+L+F W V DGR DA+
Sbjct 22 TQWLTRGAVFAVLMVLVRVVQGLAISLWETHGTAINIVLVLVFLAAVTAWAVADGRGDAQ 81
Query 62 ASPDPDRRQDLAMTWLLAGLVAGALSGAVAWLISLFYKAIYTGGPINELTTFAAFTALIV 121
+PDPDRR+DLAM WLL G+ AG +SG V WLISLF IY + ELTT AAF AL+V
Sbjct 82 RNPDPDRREDLAMWWLLGGIFAGVVSGLVIWLISLFNDGIYAASILAELTTTAAFVALLV 141
Query 122 FLVGIVGVAVGRWLVDRQLAKAPVRHHGLAAEHERAADTDVFSAVRADDSPT 173
F+ + GV GR LVDR +H AA + +DTDVF AV+ + T
Sbjct 142 FVPAMAGVFAGRLLVDR-------KHKEHAALQQ--SDTDVFQAVQEEADAT 184
>gi|325672556|ref|ZP_08152252.1| hypothetical protein HMPREF0724_10033 [Rhodococcus equi ATCC
33707]
gi|325556433|gb|EGD26099.1| hypothetical protein HMPREF0724_10033 [Rhodococcus equi ATCC
33707]
Length=212
Score = 108 bits (270), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 69/207 (34%), Positives = 103/207 (50%), Gaps = 9/207 (4%)
Query 1 MTNWMLRGLAFAAAMVVLRLFQGALINAWQMLSGLISLVLLLLFAIGGVVWGVMDGRADA 60
M W++RGL A V+R F GA + W ++ L+L + +WG DG D
Sbjct 1 MNGWVVRGLGLALVHAVVRTFLGAAVTQWPQQGSILRWFSLILVILAAFLWGAFDGIRDR 60
Query 61 KASPDPDRRQDLAMTWLLAGLVAGALSGAVAWLISLFYK-AIYTGGPINELTTFAAFTAL 119
+A+PDPD DL M WL A VAG L+GAV+WL+ L + A+ G E+T+ AAFT L
Sbjct 61 RANPDPDDAADLTMMWLKAAFVAGILAGAVSWLVGLIFDIAVTNGSLFFEVTSGAAFTVL 120
Query 120 IVFLVGIVGVAVGRWLVDRQLAKAPVRHHGLAAEHERAADTDVFSAVRADDSPTGEMQVA 179
+VF+ V VA+GR+L R+ + +A EH+ + + +A DS + +
Sbjct 121 LVFVPASVAVALGRFLAGRE---SKSSDGAVAYEHDADLEVEENAAENYADS-----EWS 172
Query 180 QPEAQTAAVATVEREAPTEVIRTTESD 206
+ E+ TEV + D
Sbjct 173 YEHGNESGYNPAADESATEVFSPVDPD 199
>gi|262202258|ref|YP_003273466.1| hypothetical protein Gbro_2328 [Gordonia bronchialis DSM 43247]
gi|262085605|gb|ACY21573.1| hypothetical protein Gbro_2328 [Gordonia bronchialis DSM 43247]
Length=169
Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/169 (40%), Positives = 100/169 (60%), Gaps = 15/169 (8%)
Query 1 MTNWMLRGLAFAAAMVVLRLFQG-ALINA------WQMLSGLISLVLLLLFAIGGVVWGV 53
M++W+ RGL AA ++ R+ G A+++A W+ ++ + ++VL+ L +WG
Sbjct 1 MSSWLPRGLVMAAVHIIARILLGIAVVHAPLHSTTWKTIA-VAAVVLIAL------IWGG 53
Query 54 MDGRADAKASPDPDRRQDLAMTWLLAGLVAGALSGAVAWLI-SLFYKAIYTGGPINELTT 112
DG DA+A+PDPD +DL + WL AGLVAG +SG V WLI +L+ I G + EL
Sbjct 54 FDGIRDARANPDPDDYEDLTVRWLQAGLVAGVISGPVCWLIGTLWMAGIGQSGFLIELIA 113
Query 113 FAAFTALIVFLVGIVGVAVGRWLVDRQLAKAPVRHHGLAAEHERAADTD 161
+FTAL+VF+ VG AVGR+LV RQ ++ + +RA D D
Sbjct 114 GGSFTALLVFVPAFVGAAVGRFLVRRQNRRSNHDDDDWSVHPDRAEDAD 162
>gi|226306482|ref|YP_002766442.1| hypothetical protein RER_29950 [Rhodococcus erythropolis PR4]
gi|226185599|dbj|BAH33703.1| hypothetical membrane protein [Rhodococcus erythropolis PR4]
Length=202
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/203 (34%), Positives = 101/203 (50%), Gaps = 18/203 (8%)
Query 1 MTNWMLRGLAFAAAMVVLRLFQGALINAWQMLSGLISLVLLLLFAIGGVVWGVMDGRADA 60
M W++RGL A VV R GA I W + + + LL+ + +WG +DG D
Sbjct 1 MNAWLVRGLGMALIHVVFRALLGAAIAQWPLQGSTLRWLSLLIVIVFAAIWGGIDGIRDR 60
Query 61 KASPDPDRRQDLAMTWLLAGLVAGALSGAVAWLISLFYKAIYT-GGPINELTTFAAFTAL 119
+ P+P+ DL M WL A LV G ++GA +W +SL T G E+T+ AAFT L
Sbjct 61 RNFPEPEDGADLTMLWLKAALVGGFVAGAASWALSLVPSLELTQQGLFFEVTSGAAFTIL 120
Query 120 IVFLVGIVGVAVGRWLVDRQLAKAPVRHHGLAAE---HERAADTDVFSAVRADDSPTGE- 175
++F+ ++ + VGR+ V R+ R +G A + HER + S DSPT +
Sbjct 121 LIFVPAMIAITVGRFFVSRE-----QRKNGTAPQTPSHERHHEPVPVS--EGYDSPTEQH 173
Query 176 ------MQVAQPEAQTAAVATVE 192
M V + +A TA ++
Sbjct 174 AYSGAAMSVEESDADTAVFPAID 196
>gi|312139560|ref|YP_004006896.1| integral membrane protein [Rhodococcus equi 103S]
gi|311888899|emb|CBH48212.1| putative integral membrane protein [Rhodococcus equi 103S]
Length=187
Score = 88.2 bits (217), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 58/179 (33%), Positives = 88/179 (50%), Gaps = 9/179 (5%)
Query 29 WQMLSGLISLVLLLLFAIGGVVWGVMDGRADAKASPDPDRRQDLAMTWLLAGLVAGALSG 88
W ++ L+L + +WG DG D +A+PDPD DL M WL A VAG L+G
Sbjct 4 WPQQGSILRWFSLILVILAAFLWGAFDGIRDRRANPDPDDAADLTMMWLKAAFVAGILAG 63
Query 89 AVAWLISLFYK-AIYTGGPINELTTFAAFTALIVFLVGIVGVAVGRWLVDRQLAKAPVRH 147
AV+WL+ L + A+ G E+T+ AAFT L+VF+ V VA+GR+L R+ +
Sbjct 64 AVSWLVGLIFDIAVTNGSLFFEVTSGAAFTVLLVFVPASVAVALGRFLAGRE---SKSSD 120
Query 148 HGLAAEHERAADTDVFSAVRADDSPTGEMQVAQPEAQTAAVATVEREAPTEVIRTTESD 206
+A EH+ + + +A DS + + + E+ TEV + D
Sbjct 121 GAVAYEHDADLEVEENAAENYADS-----EWSYEHGNESGYNPAADESATEVFSPVDPD 174
>gi|54025610|ref|YP_119852.1| hypothetical protein nfa36400 [Nocardia farcinica IFM 10152]
gi|54017118|dbj|BAD58488.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=159
Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/155 (40%), Positives = 86/155 (56%), Gaps = 17/155 (10%)
Query 1 MTNWMLRGLAFAAAMVVLRLFQG-ALINA------WQMLSGLISLVLLLLFAIGGVVWGV 53
M W++RG+ A +V LR+ G A++NA W+ML LV+LL +G WGV
Sbjct 4 MNAWVVRGVLLGALVVALRVLLGIAMVNAPTQGVWWRMLC----LVVLLAAIVG---WGV 56
Query 54 MDGRADAKASPDPDRRQDLAMTWLLAGLVAGALSGAVAWLISLFYKAIYTG--GPINELT 111
+DGR D A PDP+R DL + WL A ++ G S WL+ F G G + ELT
Sbjct 57 LDGRRDRVAHPDPERGSDLTIRWLQAAVLGGLGSSLACWLLD-FLPGFDLGDNGLLFELT 115
Query 112 TFAAFTALIVFLVGIVGVAVGRWLVDRQLAKAPVR 146
+AF L++F+ + GVA+GR+L R+ KA R
Sbjct 116 ASSAFIVLLIFVPALAGVAIGRFLAGRKADKATAR 150
>gi|226366333|ref|YP_002784116.1| hypothetical protein ROP_69240 [Rhodococcus opacus B4]
gi|226244823|dbj|BAH55171.1| hypothetical membrane protein [Rhodococcus opacus B4]
Length=247
Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/143 (33%), Positives = 76/143 (54%), Gaps = 1/143 (0%)
Query 1 MTNWMLRGLAFAAAMVVLRLFQGALINAWQMLSGLISLVLLLLFAIGGVVWGVMDGRADA 60
M W++RGL A V +R+ G I W + + + LL+ ++W +DG D
Sbjct 1 MNAWVVRGLGMALIHVFVRVILGVSITQWPLQGSALRWLALLIVVFVALIWAGIDGIRDR 60
Query 61 KASPDPDRRQDLAMTWLLAGLVAGALSGAVAWLISLFYKAIYTGGP-INELTTFAAFTAL 119
+ +PDP+ DL M WL A L+ G ++G +WL +L T E+T+ AAFT L
Sbjct 61 RRNPDPEDGADLTMLWLKAALLGGVVAGVGSWLANLVPNLNVTQNSFFFEITSGAAFTVL 120
Query 120 IVFLVGIVGVAVGRWLVDRQLAK 142
++F+ ++ V +GR+ V R+ K
Sbjct 121 LIFVPAMLAVFLGRFFVGRESRK 143
>gi|343924543|ref|ZP_08764091.1| hypothetical protein GOALK_017_00010 [Gordonia alkanivorans NBRC
16433]
gi|343765478|dbj|GAA11017.1| hypothetical protein GOALK_017_00010 [Gordonia alkanivorans NBRC
16433]
Length=153
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/95 (45%), Positives = 61/95 (65%), Gaps = 1/95 (1%)
Query 49 VVWGVMDGRADAKASPDPDRRQDLAMTWLLAGLVAGALSGAVAWLI-SLFYKAIYTGGPI 107
+VWG DG DA+A+PDPD +DL + WL AG++AG ++G ++W++ + I G
Sbjct 39 LVWGGFDGIRDARANPDPDDYEDLTVRWLKAGVMAGVIAGLISWILGNTVLAGIGQAGLF 98
Query 108 NELTTFAAFTALIVFLVGIVGVAVGRWLVDRQLAK 142
EL A+FTAL+VF+ VG A+GRWL+ R K
Sbjct 99 VELIAGASFTALLVFVPAFVGAAIGRWLIRRDQNK 133
>gi|326382151|ref|ZP_08203843.1| hypothetical protein SCNU_04366 [Gordonia neofelifaecis NRRL
B-59395]
gi|326198881|gb|EGD56063.1| hypothetical protein SCNU_04366 [Gordonia neofelifaecis NRRL
B-59395]
Length=163
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/143 (35%), Positives = 77/143 (54%), Gaps = 1/143 (0%)
Query 1 MTNWMLRGLAFAAAMVVLRLFQGALINAWQMLSGLISLVLLLLFAIGGVVWGVMDGRADA 60
M++W+LRG + + R+ G ++ + S L + ++ + V+WG DG DA
Sbjct 1 MSSWLLRGAVMSIVHIAARIILGVVVITAPLSSPLGRWLAIIAVILVAVIWGGFDGIRDA 60
Query 61 KASPDPDRRQDLAMTWLLAGLVAGALSGAVAWLI-SLFYKAIYTGGPINELTTFAAFTAL 119
+A PDPD +DL M WL AGLVA +S V W++ +L+ I E+T +F L
Sbjct 61 RAHPDPDDYEDLTMRWLKAGLVAAVVSCLVCWILGTLWLNGIGQASFWIEMTAGVSFITL 120
Query 120 IVFLVGIVGVAVGRWLVDRQLAK 142
IV+L GV++GR+ V R K
Sbjct 121 IVYLPAFFGVSLGRFFVRRDQRK 143
>gi|111024093|ref|YP_707065.1| hypothetical protein RHA1_ro07143 [Rhodococcus jostii RHA1]
gi|110823623|gb|ABG98907.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=248
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/238 (30%), Positives = 106/238 (45%), Gaps = 14/238 (5%)
Query 1 MTNWMLRGLAFAAAMVVLRLFQGALINAWQMLSGLISLVLLLLFAIGGVVWGVMDGRADA 60
M W++RGL A V +R+ G I W + + + LL+ ++W +DG D
Sbjct 1 MNAWVVRGLGMALIHVFVRVILGVSITQWPLQGSALRWLALLVVVFVALIWAGIDGIRDR 60
Query 61 KASPDPDRRQDLAMTWLLAGLVAGALSGAVAWLISLFYKAIYTGGP-INELTTFAAFTAL 119
+ +P+P+ DL M WL A L+ G ++G +WL +L T E+T+ AAFT L
Sbjct 61 RRNPEPEDGADLTMLWLKAALLGGIVAGVGSWLANLIPSLNVTQNSFFFEITSGAAFTVL 120
Query 120 IVFLVGIVGVAVGRWLVDRQLAKAPV----RH--HGLAAEHERAADTDVFSAVRADDSPT 173
++F+ ++ +GR+ V R+ K RH A AA +A ADD
Sbjct 121 LIFVPAMLAAFLGRFFVSRESRKTEKDRSERHPAARGAGTAAGAAAGGTAAAAVADDEGY 180
Query 174 GEMQVAQPEAQTAAVATVEREAPTEVIRTTESDTPTEVIRTDT-EADQTKPGDEPKKD 230
G+ Q QTA +A T V P R DT + DQ + D +D
Sbjct 181 GQNYPGQAYEQTADTGYAGSDADTAVFE------PVHNYREDTSDLDQPQGADTAWQD 232
>gi|229493664|ref|ZP_04387449.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|229319625|gb|EEN85461.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=186
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/187 (32%), Positives = 92/187 (50%), Gaps = 18/187 (9%)
Query 17 VLRLFQGALINAWQMLSGLISLVLLLLFAIGGVVWGVMDGRADAKASPDPDRRQDLAMTW 76
+ R GA I W + + + LL+ + +WG +DG D + P+P+ DL M W
Sbjct 1 MFRALLGAAIAQWPLQGSTLRWLSLLIVIVFAAIWGGIDGIRDRRNFPEPEDGADLTMLW 60
Query 77 LLAGLVAGALSGAVAWLISLFYKAIYT-GGPINELTTFAAFTALIVFLVGIVGVAVGRWL 135
L A LV G ++GA +W +SL T G E+T+ AAFT L++F+ ++ + VGR+
Sbjct 61 LKAALVGGFVAGAASWALSLVPSLELTQQGLFFEVTSGAAFTILLIFVPAMIAITVGRFF 120
Query 136 VDRQLAKAPVRHHGLAAE---HERAADTDVFSAVRADDSPTGE-------MQVAQPEAQT 185
V R+ R +G A + HER + S DSPT + M V + +A T
Sbjct 121 VSRE-----QRKNGTAPQTPSHERHYEPVPVS--EGYDSPTEQHAYSGAAMSVEESDADT 173
Query 186 AAVATVE 192
A ++
Sbjct 174 AVFPAID 180
>gi|333919517|ref|YP_004493098.1| hypothetical protein AS9A_1849 [Amycolicicoccus subflavus DQS3-9A1]
gi|333481738|gb|AEF40298.1| Hypothetical membrane protein [Amycolicicoccus subflavus DQS3-9A1]
Length=217
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/153 (31%), Positives = 72/153 (48%), Gaps = 9/153 (5%)
Query 12 AAAMVVLRLFQGALINAWQMLSGLISLVLLLLFAIGGVVWGVMDGRADAKASPDPDRRQD 71
AA + +R G I W G+ + L++ + + W DGR DA+ + DP+ R D
Sbjct 12 AAVITFVRAVLGIGIYTWPESGGVQRTIALIVVLLAALAWPFFDGRRDAQENEDPEDRAD 71
Query 72 LAMTWLLAGLVAGALSGAVAWLISLFYKAIYTGGPINELTTFAAFTALIVFLVGIVGVAV 131
L + WL A LVA +SGA +WL+S I ELT F L++ + +G+
Sbjct 72 LTLFWLKAALVAALVSGAASWLLSFVIPGASVQSLIFELTIGTGFVTLLLSIPAQIGILT 131
Query 132 GRWLVDRQLAK-APV-------RHHGLAAEHER 156
GR + + AP RHH + A H++
Sbjct 132 GRAYGEYSRKRSAPAEEEDEFGRHH-IQAHHQK 163
>gi|296139945|ref|YP_003647188.1| hypothetical protein Tpau_2240 [Tsukamurella paurometabola DSM
20162]
gi|296028079|gb|ADG78849.1| conserved hypothetical protein [Tsukamurella paurometabola DSM
20162]
Length=145
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/144 (32%), Positives = 65/144 (46%), Gaps = 1/144 (0%)
Query 1 MTNWMLRGLAFAAAMVVLRLFQGALINAWQMLSGLISLVLLLLFAIGGVVWGVMDGRADA 60
M W+LRG+A A MV +R G I + + + + +V+G DG DA
Sbjct 1 MKPWLLRGIALAVLMVAVRCVLGWGITTFPTVGTPQRFAAVAVVIAVAMVFGGYDGLIDA 60
Query 61 KASPDPDRRQDLAMTWLLAGLVAGALSGAVAWLI-SLFYKAIYTGGPINELTTFAAFTAL 119
+ PD D+ DL W + L AG +SGAV W + + I G EL A FT L
Sbjct 61 RRYPDADKGVDLTSRWFKSALFAGVVSGAVCWAVGTWLLPGIGQGSLPFELVIGACFTTL 120
Query 120 IVFLVGIVGVAVGRWLVDRQLAKA 143
++ + +G GR L R A
Sbjct 121 LIVIPASIGTVTGRRLATRNAVPA 144
>gi|225558971|gb|EEH07254.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length=1217
Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 48/186 (26%), Positives = 85/186 (46%), Gaps = 30/186 (16%)
Query 26 INAWQMLSGLIS--LVLLLL-----FAIGGVVWGVMDGRADAKASPDPDRRQDLAMTWLL 78
I ++++ GL S ++ LLL F +G + + ++ SP D ++
Sbjct 420 IGNFELIPGLFSGEIICLLLTIPVQFGVGKRFY-IASFKSLKHGSPTMD-------VLVM 471
Query 79 AGLVAGALSGAVAWLISLFYKAIYTGGPINELTTFAAFTALIVFLVGIVGVAVGRWLVDR 138
G A +A L+S+F+K +T F T LI F +++GRWL +R
Sbjct 472 LGTSAAFFFSILAMLVSVFFKPHS-----RPMTVFETSTMLITF------ISLGRWLENR 520
Query 139 ---QLAKAPVRHHGLAAEHERAADTDVFSAVRADDSPTGEMQVAQPEAQTAAVATVEREA 195
Q ++A R LA D + + A++ + + A+ + TAAV+TV++
Sbjct 521 AKGQTSRALSRLMSLAPSMATIYDDPIAVEMLAENWGSVPLS-AEKDKATAAVSTVQKTI 579
Query 196 PTEVIR 201
PTE+I+
Sbjct 580 PTELIQ 585
>gi|154275240|ref|XP_001538471.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150414911|gb|EDN10273.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length=797
Score = 39.3 bits (90), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 47/186 (26%), Positives = 83/186 (45%), Gaps = 30/186 (16%)
Query 26 INAWQMLSGLIS--LVLLLL-----FAIGGVVWGVMDGRADAKASPDPDRRQDLAMTWLL 78
I ++++ GL S ++ LLL F +G + + ++ SP D ++
Sbjct 16 IGNFELIPGLFSGEIICLLLTIPVQFGVGKRFY-IASFKSLKHGSPTMD-------VLVM 67
Query 79 AGLVAGALSGAVAWLISLFYKAIYTGGPINELTTFAAFTALIVFLVGIVGVAVGRWLVDR 138
G A +A L+S+F+K +T F T LI F +++GRWL +R
Sbjct 68 LGTSAAFFFSILAMLVSIFFKPHS-----RPMTVFETSTMLITF------ISLGRWLENR 116
Query 139 ---QLAKAPVRHHGLAAEHERAADTDVFSAVRADDSPTGEMQVAQPEAQTAAVATVEREA 195
Q ++A R LA D + + A+ + + A+ + AAV+TV++
Sbjct 117 AKGQTSRALSRLMSLAPSMATIYDDPIAVEMLAESWGSVPLS-AEKDKTIAAVSTVQKTI 175
Query 196 PTEVIR 201
PTE+I+
Sbjct 176 PTELIQ 181
>gi|291234799|ref|XP_002737332.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
Length=848
Score = 39.3 bits (90), Expect = 0.42, Method: Composition-based stats.
Identities = 26/67 (39%), Positives = 31/67 (47%), Gaps = 9/67 (13%)
Query 172 PTGEMQ-VAQPEAQTAAVATVEREA-------PTEVIRTTESDTPTEVIRTDTEADQTKP 223
PT E + QP T A +VERE PTE + T S +P VI T EAD TK
Sbjct 30 PTTEDSGIGQPTPITPAEWSVEREGSTNSVARPTETVHTERSQSPVSVIETQLEAD-TKS 88
Query 224 GDEPKKD 230
P +
Sbjct 89 SPSPSNE 95
>gi|325088027|gb|EGC41337.1| copper-transporting ATPase [Ajellomyces capsulatus H88]
Length=1208
Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 48/186 (26%), Positives = 84/186 (46%), Gaps = 30/186 (16%)
Query 26 INAWQMLSGLIS--LVLLLL-----FAIGGVVWGVMDGRADAKASPDPDRRQDLAMTWLL 78
I ++++ GL S ++ LLL F +G + + ++ SP D ++
Sbjct 420 IGNFELIPGLFSGEIICLLLTIPVQFGVGKRFY-IASFKSLKHGSPTMD-------VLVM 471
Query 79 AGLVAGALSGAVAWLISLFYKAIYTGGPINELTTFAAFTALIVFLVGIVGVAVGRWLVDR 138
G A +A L+S+F+K +T F T LI F +++GRWL +R
Sbjct 472 LGTSAAFFFSILAMLVSVFFKPHS-----RPMTVFETSTMLITF------ISLGRWLENR 520
Query 139 ---QLAKAPVRHHGLAAEHERAADTDVFSAVRADDSPTGEMQVAQPEAQTAAVATVEREA 195
Q ++A R LA D V + A++ + + A+ + AAV+TV++
Sbjct 521 AKGQTSRALSRLMSLAPSMATIYDDPVAVEMLAENWGSVPLS-AEMDKAAAAVSTVQKTI 579
Query 196 PTEVIR 201
PTE+I+
Sbjct 580 PTELIQ 585
>gi|240281892|gb|EER45395.1| copper-transporting ATPase [Ajellomyces capsulatus H143]
Length=452
Score = 38.9 bits (89), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 48/186 (26%), Positives = 84/186 (46%), Gaps = 30/186 (16%)
Query 26 INAWQMLSGLIS--LVLLLL-----FAIGGVVWGVMDGRADAKASPDPDRRQDLAMTWLL 78
I ++++ GL S ++ LLL F +G + + ++ SP D ++
Sbjct 247 IGNFELIPGLFSGEIICLLLTIPVQFGVGKRFY-IASFKSLKHGSPTMD-------VLVM 298
Query 79 AGLVAGALSGAVAWLISLFYKAIYTGGPINELTTFAAFTALIVFLVGIVGVAVGRWLVDR 138
G A +A L+S+F+K +T F T LI F +++GRWL +R
Sbjct 299 LGTSAAFFFSILAMLVSVFFKPHS-----RPMTVFETSTMLITF------ISLGRWLENR 347
Query 139 ---QLAKAPVRHHGLAAEHERAADTDVFSAVRADDSPTGEMQVAQPEAQTAAVATVEREA 195
Q ++A R LA D V + A++ + + A+ + AAV+TV++
Sbjct 348 AKGQTSRALSRLMSLAPSMATIYDDPVAVEMLAENWGSVPLS-AEMDKAAAAVSTVQKTI 406
Query 196 PTEVIR 201
PTE+I+
Sbjct 407 PTELIQ 412
>gi|316939674|gb|ADU73708.1| cellulosome anchoring protein cohesin region [Clostridium thermocellum
DSM 1313]
Length=1615
Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 20/58 (35%), Positives = 27/58 (47%), Gaps = 0/58 (0%)
Query 170 DSPTGEMQVAQPEAQTAAVATVEREAPTEVIRTTESDTPTEVIRTDTEADQTKPGDEP 227
D PT + + T + + PT T S+TP E I TDT +D+ P DEP
Sbjct 821 DEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEP 878
Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 20/58 (35%), Positives = 27/58 (47%), Gaps = 0/58 (0%)
Query 170 DSPTGEMQVAQPEAQTAAVATVEREAPTEVIRTTESDTPTEVIRTDTEADQTKPGDEP 227
D PT + + T + + PT T S+TP E I TDT +D+ P DEP
Sbjct 962 DEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEP 1019
Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 20/58 (35%), Positives = 27/58 (47%), Gaps = 0/58 (0%)
Query 170 DSPTGEMQVAQPEAQTAAVATVEREAPTEVIRTTESDTPTEVIRTDTEADQTKPGDEP 227
D PT + + T + + PT T S+TP E I TDT +D+ P DEP
Sbjct 1060 DEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEP 1117
Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 20/58 (35%), Positives = 27/58 (47%), Gaps = 0/58 (0%)
Query 170 DSPTGEMQVAQPEAQTAAVATVEREAPTEVIRTTESDTPTEVIRTDTEADQTKPGDEP 227
D PT + + T + + PT T S+TP E I TDT +D+ P DEP
Sbjct 1183 DEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEP 1240
Score = 35.8 bits (81), Expect = 4.6, Method: Composition-based stats.
Identities = 21/59 (36%), Positives = 27/59 (46%), Gaps = 1/59 (1%)
Query 170 DSPTGEMQVAQPEAQTAAVAT-VEREAPTEVIRTTESDTPTEVIRTDTEADQTKPGDEP 227
D PT + E + T + PT T S+TP E I TDT +D+ P DEP
Sbjct 1127 DEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEP 1185
>gi|125975557|ref|YP_001039467.1| cellulosome anchoring protein, cohesin region [Clostridium thermocellum
ATCC 27405]
gi|145559529|sp|Q06852.2|SLAP1_CLOTH RecName: Full=Cell surface glycoprotein 1; AltName: Full=Outer
layer protein B; AltName: Full=S-layer protein 1; Flags: Precursor
gi|125715782|gb|ABN54274.1| cellulosome anchoring protein, cohesin region [Clostridium thermocellum
ATCC 27405]
Length=2313
Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 20/58 (35%), Positives = 27/58 (47%), Gaps = 0/58 (0%)
Query 170 DSPTGEMQVAQPEAQTAAVATVEREAPTEVIRTTESDTPTEVIRTDTEADQTKPGDEP 227
D PT + + T + + PT T S+TP E I TDT +D+ P DEP
Sbjct 1564 DEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEP 1621
Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 20/58 (35%), Positives = 27/58 (47%), Gaps = 0/58 (0%)
Query 170 DSPTGEMQVAQPEAQTAAVATVEREAPTEVIRTTESDTPTEVIRTDTEADQTKPGDEP 227
D PT + + T + + PT T S+TP E I TDT +D+ P DEP
Sbjct 1619 DEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEP 1676
Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 20/58 (35%), Positives = 27/58 (47%), Gaps = 0/58 (0%)
Query 170 DSPTGEMQVAQPEAQTAAVATVEREAPTEVIRTTESDTPTEVIRTDTEADQTKPGDEP 227
D PT + + T + + PT T S+TP E I TDT +D+ P DEP
Sbjct 1932 DEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEP 1989
>gi|296881|emb|CAA47841.1| S-layer protein [Clostridium thermocellum]
Length=1664
Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 20/58 (35%), Positives = 27/58 (47%), Gaps = 0/58 (0%)
Query 170 DSPTGEMQVAQPEAQTAAVATVEREAPTEVIRTTESDTPTEVIRTDTEADQTKPGDEP 227
D PT + + T + + PT T S+TP E I TDT +D+ P DEP
Sbjct 958 DEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEP 1015
Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 20/58 (35%), Positives = 27/58 (47%), Gaps = 0/58 (0%)
Query 170 DSPTGEMQVAQPEAQTAAVATVEREAPTEVIRTTESDTPTEVIRTDTEADQTKPGDEP 227
D PT + + T + + PT T S+TP E I TDT +D+ P DEP
Sbjct 1013 DEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEP 1070
Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 20/58 (35%), Positives = 27/58 (47%), Gaps = 0/58 (0%)
Query 170 DSPTGEMQVAQPEAQTAAVATVEREAPTEVIRTTESDTPTEVIRTDTEADQTKPGDEP 227
D PT + + T + + PT T S+TP E I TDT +D+ P DEP
Sbjct 1283 DEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEP 1340
>gi|44891709|tpg|DAA02258.1| TPA_exp: S6 sporozoite-induced protein [Plasmodium yoelii]
Length=2720
Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 21/73 (29%), Positives = 33/73 (46%), Gaps = 3/73 (4%)
Query 159 DTDVFSAVRADDSPTGEMQVAQPEAQTAAVATVEREAPTEVIRTTESDTP---TEVIRTD 215
D + + +D PT E + + + TVE + PT +T E D P ++VI D
Sbjct 1566 DKPAYESKIVEDMPTYETKTVEEDKPVHETKTVEEDIPTYETKTVEEDKPVYESKVIEED 1625
Query 216 TEADQTKPGDEPK 228
+TK +E K
Sbjct 1626 IPVHETKTVEEDK 1638
>gi|266620637|ref|ZP_06113572.1| putative von Willebrand factor type A domain protein [Clostridium
hathewayi DSM 13479]
gi|288867752|gb|EFD00051.1| putative von Willebrand factor type A domain protein [Clostridium
hathewayi DSM 13479]
Length=2963
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 26/92 (29%), Positives = 40/92 (44%), Gaps = 3/92 (3%)
Query 142 KAPVRHHGLAAEHERAADTDVFSAVRADDSPTGEMQVAQPEAQTAAVATV---EREAPTE 198
K V+ + AE E+ A + +A+ D + + PE + +V E EAPT+
Sbjct 157 KVTVKGNSSFAETEKPALDENGNALEGDKPAQNQEEATAPEEENGSVEETKEPETEAPTQ 216
Query 199 VIRTTESDTPTEVIRTDTEADQTKPGDEPKKD 230
V T ES E E + T P EP+ +
Sbjct 217 VPETEESIQEPETEAPVQEPETTAPAKEPETE 248
>gi|26246823|ref|NP_752863.1| hypothetical protein c0933 [Escherichia coli CFT073]
gi|26107223|gb|AAN79406.1|AE016758_10 Hypothetical protein c0933 [Escherichia coli CFT073]
Length=323
Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/64 (30%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query 72 LAMTWLLAGLVAGALSGAVAWLISLFYKAIYTGGPINELTTFAAFTALIVFLVGIVGVAV 131
LA TW +AG +AG LS + ISL++ + + F +F G++G+++
Sbjct 179 LAKTWAIAGAIAG-LSAVIFSFISLYF--------VTDFINAKGFELFYLFTRGLIGISI 229
Query 132 GRWL 135
WL
Sbjct 230 LSWL 233
>gi|147899185|ref|NP_001088272.1| major facilitator superfamily domain-containing protein 6-like
protein B [Xenopus laevis]
gi|82180381|sp|Q5XGZ9.1|MF6LB_XENLA RecName: Full=Major facilitator superfamily domain-containing
protein 6-like protein B
gi|54038672|gb|AAH84277.1| LOC495104 protein [Xenopus laevis]
Length=614
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 39/141 (28%), Positives = 61/141 (44%), Gaps = 26/141 (18%)
Query 2 TNWMLRGLAFAAAMV---VLRLFQGALINA----WQMLSGLISLVLLLLF---------- 44
+N + GL+ AA ++ L F+ L+ W ++ GL+SL + L+
Sbjct 423 SNELYMGLSIAAGLLSELALYFFRNKLLKTLTFKWMVVLGLLSLGIQFLYYSFLWTPWSV 482
Query 45 -AI-------GGVVWGVMDGRADAKASPDPDRRQDLAMTWLLAGLVAGALSGAVAWLISL 96
AI GV+W ++ + ASP +R L + WL G + A S A ++IS
Sbjct 483 VAIQILNAFSSGVIWWAINSQVVDVASPGTERSLQLTLRWLAYGCGSSAGSFASGFIISR 542
Query 97 FYKAI-YTGGPINELTTFAAF 116
F A+ Y I LT F
Sbjct 543 FSLAVLYQACCITLLTWIVIF 563
>gi|167590071|ref|ZP_02382459.1| multi-sensor hybrid histidine kinase [Burkholderia ubonensis
Bu]
Length=450
Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/93 (35%), Positives = 44/93 (48%), Gaps = 11/93 (11%)
Query 74 MTWLLAGLVAGALSGAVAWLISLFYKAIYTGGPINELTTFAAFTALIVFLVGIVGVAVGR 133
MT AGL+A A+S A+AW++ L A YTG L F LVG + A+
Sbjct 22 MTSFGAGLLATAISAALAWMLFLSDPAAYTGSLAERLVRLGTF-----MLVGALACAIAS 76
Query 134 WLVDRQLAKAPVRHHGLAAEHERAADTDVFSAV 166
L R++ A RH A ER D V +++
Sbjct 77 AL--RRMGDAQ-RHRESA---ERRHDETVLASL 103
>gi|326794039|ref|YP_004311859.1| polysaccharide biosynthesis protein [Marinomonas mediterranea
MMB-1]
gi|326544803|gb|ADZ90023.1| polysaccharide biosynthesis protein [Marinomonas mediterranea
MMB-1]
Length=493
Score = 35.4 bits (80), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/83 (33%), Positives = 44/83 (54%), Gaps = 11/83 (13%)
Query 57 RADAKASPDPDRRQDLAMTWLLAGLVAGALSGAVAWLISLFYKAIYTGGPINELTTFAA- 115
R KA+ D D+RQ ++A L+ AL A+ ++S+F T IN++TT +A
Sbjct 81 RQAGKATNDADKRQ------IVAQLIGTALCMAILIIVSVFLSFSMTLPLINQITTLSAT 134
Query 116 ---FTALIVFLVGIVGVAVGRWL 135
LI+ L G++G+ + WL
Sbjct 135 ELLLCTLIISLEGVLGLCLA-WL 156
>gi|227432535|ref|ZP_03914519.1| branched chain amino acid ABC superfamily ATP binding cassette
transporter, membrane protein [Leuconostoc mesenteroides subsp.
cremoris ATCC 19254]
gi|227351713|gb|EEJ41955.1| branched chain amino acid ABC superfamily ATP binding cassette
transporter, membrane protein [Leuconostoc mesenteroides subsp.
cremoris ATCC 19254]
Length=266
Score = 35.4 bits (80), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 38/122 (32%), Positives = 59/122 (49%), Gaps = 11/122 (9%)
Query 21 FQGALINAWQMLSGLISLVLLLLFAIGGVVWGVMDGRADAKASPDPDRRQ----DLAMTW 76
F G ++ Q++ + S+VL+LL +V GRA S DPD ++ T
Sbjct 106 FYGIQVSNIQLIIAVTSIVLMLLLTY--IVKNTKMGRAMRAVSADPDAASLMGININHTI 163
Query 77 LLAGLVAGALSGAVAWLISLFYKAIYTGGPINELT-TFAAFTALIVFLVGIV-GVAVGRW 134
+ AL+ A LI L+Y +I P+ +T AF A ++ +GI+ G AVG W
Sbjct 164 SFTFAIGSALAAAGGVLIGLYYNSI---DPLMGMTPGLKAFFAAVLGGIGIIPGAAVGGW 220
Query 135 LV 136
L+
Sbjct 221 LI 222
Lambda K H
0.320 0.134 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 300567788510
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40