BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2541

Length=135
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609678|ref|NP_217057.1|  hypothetical protein Rv2541 [Mycoba...   252    1e-65
gi|339632568|ref|YP_004724210.1|  alanine rich protein [Mycobacte...   252    1e-65
gi|15842075|ref|NP_337112.1|  hypothetical protein MT2615.1 [Myco...   246    7e-64
gi|289570709|ref|ZP_06450936.1|  predicted protein [Mycobacterium...   207    4e-52
gi|289758670|ref|ZP_06518048.1|  alanine rich protein [Mycobacter...   192    1e-47
gi|254232661|ref|ZP_04925988.1|  hypothetical alanine rich protei...   185    2e-45
gi|254551590|ref|ZP_05142037.1|  hypothetical protein Mtube_14217...   185    2e-45
gi|308232167|ref|ZP_07415152.2|  hypothetical alanine rich protei...   181    3e-44
gi|339295420|gb|AEJ47531.1|  hypothetical alanine rich protein [M...   181    5e-44
gi|289575246|ref|ZP_06455473.1|  conserved hypothetical protein [...   174    4e-42
gi|308374610|ref|ZP_07436722.2|  hypothetical alanine rich protei...   146    1e-33
gi|308375556|ref|ZP_07444330.2|  hypothetical alanine rich protei...   140    5e-32
gi|289746327|ref|ZP_06505705.1|  conserved hypothetical protein [...   139    2e-31
gi|340627557|ref|YP_004746009.1|  hypothetical protein MCAN_25821...   138    3e-31
gi|308369746|ref|ZP_07418917.2|  hypothetical alanine rich protei...   137    4e-31
gi|289746334|ref|ZP_06505712.1|  hypothetical alanine rich protei...   130    9e-29
gi|308378418|ref|ZP_07482523.2|  hypothetical alanine rich protei...   125    3e-27
gi|308379233|ref|ZP_07485589.2|  hypothetical alanine rich protei...   124    7e-27
gi|308372331|ref|ZP_07667356.1|  hypothetical protein TMDG_00254 ...   122    2e-26
gi|308373442|ref|ZP_07667583.1|  hypothetical protein TMEG_03216 ...   120    6e-26
gi|308371050|ref|ZP_07667080.1|  hypothetical alanine rich protei...   119    2e-25
gi|313659475|ref|ZP_07816355.1|  hypothetical protein MtubKV_1369...   113    8e-24
gi|167967000|ref|ZP_02549277.1|  hypothetical protein MtubH3_0265...  79.3    2e-13
gi|333989958|ref|YP_004522572.1|  hypothetical protein JDM601_131...  54.3    6e-06
gi|308377046|ref|ZP_07668415.1|  hypothetical alanine rich protei...  53.1    1e-05
gi|313659476|ref|ZP_07816356.1|  hypothetical protein MtubKV_1369...  52.8    2e-05
gi|183980512|ref|YP_001848803.1|  hypothetical protein MMAR_0483 ...  48.9    2e-04
gi|240171965|ref|ZP_04750624.1|  hypothetical protein MkanA1_2180...  48.1    4e-04
gi|296164509|ref|ZP_06847080.1|  conserved hypothetical protein [...  47.8    6e-04
gi|118616855|ref|YP_905187.1|  hypothetical protein MUL_1134 [Myc...  46.6    0.001
gi|183980509|ref|YP_001848800.1|  hypothetical protein MMAR_0480 ...  45.1    0.004
gi|118466147|ref|YP_882328.1|  hypothetical protein MAV_3144 [Myc...  44.7    0.005
gi|118464007|ref|YP_879780.1|  hypothetical protein MAV_0499 [Myc...  38.5    0.29 
gi|296170641|ref|ZP_06852216.1|  conserved hypothetical protein [...  36.6    1.2  
gi|206590627|emb|CAQ37589.1|  hemagglutinin-related protein [Rals...  34.7    5.3  


>gi|15609678|ref|NP_217057.1| hypothetical protein Rv2541 [Mycobacterium tuberculosis H37Rv]
 gi|31793723|ref|NP_856216.1| hypothetical protein Mb2570 [Mycobacterium bovis AF2122/97]
 gi|121638425|ref|YP_978649.1| hypothetical protein BCG_2563 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 27 more sequence titles
 
gi|148662379|ref|YP_001283902.1| hypothetical protein MRA_2569 [Mycobacterium tuberculosis H37Ra]
 gi|148823736|ref|YP_001288490.1| hypothetical protein TBFG_12561 [Mycobacterium tuberculosis F11]
 gi|224990919|ref|YP_002645606.1| hypothetical alanine rich protein [Mycobacterium bovis BCG str. 
Tokyo 172]
 gi|253798379|ref|YP_003031380.1| hypothetical protein TBMG_01432 [Mycobacterium tuberculosis KZN 
1435]
 gi|289444076|ref|ZP_06433820.1| hypothetical alanine rich protein [Mycobacterium tuberculosis 
T46]
 gi|289448189|ref|ZP_06437933.1| hypothetical alanine rich protein [Mycobacterium tuberculosis 
CPHL_A]
 gi|289553670|ref|ZP_06442880.1| hypothetical alanine rich protein [Mycobacterium tuberculosis 
KZN 605]
 gi|289751158|ref|ZP_06510536.1| hypothetical alanine rich protein [Mycobacterium tuberculosis 
T92]
 gi|289754655|ref|ZP_06514033.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289762709|ref|ZP_06522087.1| hypothetical alanine rich protein [Mycobacterium tuberculosis 
GM 1503]
 gi|1781061|emb|CAB06197.1| HYPOTHETICAL ALANINE RICH PROTEIN [Mycobacterium tuberculosis 
H37Rv]
 gi|31619317|emb|CAD94755.1| HYPOTHETICAL ALANINE RICH PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121494073|emb|CAL72551.1| Hypothetical alanine rich protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|148506531|gb|ABQ74340.1| hypothetical alanine rich protein [Mycobacterium tuberculosis 
H37Ra]
 gi|148722263|gb|ABR06888.1| hypothetical alanine rich protein [Mycobacterium tuberculosis 
F11]
 gi|224774032|dbj|BAH26838.1| hypothetical alanine rich protein [Mycobacterium bovis BCG str. 
Tokyo 172]
 gi|253319882|gb|ACT24485.1| hypothetical alanine rich protein [Mycobacterium tuberculosis 
KZN 1435]
 gi|289416995|gb|EFD14235.1| hypothetical alanine rich protein [Mycobacterium tuberculosis 
T46]
 gi|289421147|gb|EFD18348.1| hypothetical alanine rich protein [Mycobacterium tuberculosis 
CPHL_A]
 gi|289438302|gb|EFD20795.1| hypothetical alanine rich protein [Mycobacterium tuberculosis 
KZN 605]
 gi|289691745|gb|EFD59174.1| hypothetical alanine rich protein [Mycobacterium tuberculosis 
T92]
 gi|289695242|gb|EFD62671.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289710215|gb|EFD74231.1| hypothetical alanine rich protein [Mycobacterium tuberculosis 
GM 1503]
 gi|326904156|gb|EGE51089.1| hypothetical alanine rich protein [Mycobacterium tuberculosis 
W-148]
 gi|328458149|gb|AEB03572.1| hypothetical alanine rich protein [Mycobacterium tuberculosis 
KZN 4207]
 gi|341602463|emb|CCC65139.1| hypothetical alanine rich protein [Mycobacterium bovis BCG str. 
Moreau RDJ]
 gi|344220369|gb|AEN01000.1| hypothetical protein MTCTRI2_2590 [Mycobacterium tuberculosis 
CTRI-2]
Length=135

 Score =  252 bits (644),  Expect = 1e-65, Method: Compositional matrix adjust.
 Identities = 135/135 (100%), Positives = 135/135 (100%), Gaps = 0/135 (0%)

Query  1    MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLA  60
            MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLA
Sbjct  1    MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLA  60

Query  61   GELSAAVAPSGAVLSWQANAVAVNAAHARAGAAAAAVSARMRATAAALGQAARRYAGQDT  120
            GELSAAVAPSGAVLSWQANAVAVNAAHARAGAAAAAVSARMRATAAALGQAARRYAGQDT
Sbjct  61   GELSAAVAPSGAVLSWQANAVAVNAAHARAGAAAAAVSARMRATAAALGQAARRYAGQDT  120

Query  121  AAAAALGAVRPWGTH  135
            AAAAALGAVRPWGTH
Sbjct  121  AAAAALGAVRPWGTH  135


>gi|339632568|ref|YP_004724210.1| alanine rich protein [Mycobacterium africanum GM041182]
 gi|339331924|emb|CCC27627.1| putative alanine rich protein [Mycobacterium africanum GM041182]
Length=135

 Score =  252 bits (643),  Expect = 1e-65, Method: Compositional matrix adjust.
 Identities = 134/135 (99%), Positives = 135/135 (100%), Gaps = 0/135 (0%)

Query  1    MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLA  60
            MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVT+DGLQALAGRCATLA
Sbjct  1    MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTSDGLQALAGRCATLA  60

Query  61   GELSAAVAPSGAVLSWQANAVAVNAAHARAGAAAAAVSARMRATAAALGQAARRYAGQDT  120
            GELSAAVAPSGAVLSWQANAVAVNAAHARAGAAAAAVSARMRATAAALGQAARRYAGQDT
Sbjct  61   GELSAAVAPSGAVLSWQANAVAVNAAHARAGAAAAAVSARMRATAAALGQAARRYAGQDT  120

Query  121  AAAAALGAVRPWGTH  135
            AAAAALGAVRPWGTH
Sbjct  121  AAAAALGAVRPWGTH  135


>gi|15842075|ref|NP_337112.1| hypothetical protein MT2615.1 [Mycobacterium tuberculosis CDC1551]
 gi|13882356|gb|AAK46926.1| hypothetical protein MT2615.1 [Mycobacterium tuberculosis CDC1551]
Length=373

 Score =  246 bits (628),  Expect = 7e-64, Method: Compositional matrix adjust.
 Identities = 133/134 (99%), Positives = 133/134 (99%), Gaps = 0/134 (0%)

Query  1    MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLA  60
            MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLA
Sbjct  1    MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLA  60

Query  61   GELSAAVAPSGAVLSWQANAVAVNAAHARAGAAAAAVSARMRATAAALGQAARRYAGQDT  120
            GELSAAVAPSGAVLSWQANAVAVNAAHARAGAAAAAVSARMRATAAALGQAARRYAGQDT
Sbjct  61   GELSAAVAPSGAVLSWQANAVAVNAAHARAGAAAAAVSARMRATAAALGQAARRYAGQDT  120

Query  121  AAAAALGAVRPWGT  134
            AAAAALGAVRPWG 
Sbjct  121  AAAAALGAVRPWGN  134


>gi|289570709|ref|ZP_06450936.1| predicted protein [Mycobacterium tuberculosis T17]
 gi|289544463|gb|EFD48111.1| predicted protein [Mycobacterium tuberculosis T17]
Length=129

 Score =  207 bits (527),  Expect = 4e-52, Method: Compositional matrix adjust.
 Identities = 112/112 (100%), Positives = 112/112 (100%), Gaps = 0/112 (0%)

Query  1    MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLA  60
            MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLA
Sbjct  1    MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLA  60

Query  61   GELSAAVAPSGAVLSWQANAVAVNAAHARAGAAAAAVSARMRATAAALGQAA  112
            GELSAAVAPSGAVLSWQANAVAVNAAHARAGAAAAAVSARMRATAAALGQAA
Sbjct  61   GELSAAVAPSGAVLSWQANAVAVNAAHARAGAAAAAVSARMRATAAALGQAA  112


>gi|289758670|ref|ZP_06518048.1| alanine rich protein [Mycobacterium tuberculosis T85]
 gi|289714234|gb|EFD78246.1| alanine rich protein [Mycobacterium tuberculosis T85]
Length=101

 Score =  192 bits (488),  Expect = 1e-47, Method: Compositional matrix adjust.
 Identities = 101/101 (100%), Positives = 101/101 (100%), Gaps = 0/101 (0%)

Query  1    MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLA  60
            MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLA
Sbjct  1    MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLA  60

Query  61   GELSAAVAPSGAVLSWQANAVAVNAAHARAGAAAAAVSARM  101
            GELSAAVAPSGAVLSWQANAVAVNAAHARAGAAAAAVSARM
Sbjct  61   GELSAAVAPSGAVLSWQANAVAVNAAHARAGAAAAAVSARM  101


>gi|254232661|ref|ZP_04925988.1| hypothetical alanine rich protein [Mycobacterium tuberculosis 
C]
 gi|124601720|gb|EAY60730.1| hypothetical alanine rich protein [Mycobacterium tuberculosis 
C]
Length=135

 Score =  185 bits (469),  Expect = 2e-45, Method: Compositional matrix adjust.
 Identities = 127/135 (95%), Positives = 129/135 (96%), Gaps = 0/135 (0%)

Query  1    MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLA  60
            MRRR+PPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLA
Sbjct  1    MRRRQPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLA  60

Query  61   GELSAAVAPSGAVLSWQANAVAVNAAHARAGAAAAAVSARMRATAAALGQAARRYAGQDT  120
            GELSAAVAPSGAVLSWQANAVAVNAAHA AGAAA+AVSARMRATAAALGQAARRYAGQDT
Sbjct  61   GELSAAVAPSGAVLSWQANAVAVNAAHASAGAAASAVSARMRATAAALGQAARRYAGQDT  120

Query  121  AAAAALGAVRPWGTH  135
            A A AL  V PWGTH
Sbjct  121  ADADALRVVHPWGTH  135


>gi|254551590|ref|ZP_05142037.1| hypothetical protein Mtube_14217 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|294994350|ref|ZP_06800041.1| hypothetical protein Mtub2_07498 [Mycobacterium tuberculosis 
210]
 gi|297635151|ref|ZP_06952931.1| hypothetical protein MtubK4_13565 [Mycobacterium tuberculosis 
KZN 4207]
 gi|297732142|ref|ZP_06961260.1| hypothetical protein MtubKR_13685 [Mycobacterium tuberculosis 
KZN R506]
Length=104

 Score =  185 bits (469),  Expect = 2e-45, Method: Compositional matrix adjust.
 Identities = 103/104 (99%), Positives = 104/104 (100%), Gaps = 0/104 (0%)

Query  32   VEVAGGTRARLRVTADGLQALAGRCATLAGELSAAVAPSGAVLSWQANAVAVNAAHARAG  91
            +EVAGGTRARLRVTADGLQALAGRCATLAGELSAAVAPSGAVLSWQANAVAVNAAHARAG
Sbjct  1    MEVAGGTRARLRVTADGLQALAGRCATLAGELSAAVAPSGAVLSWQANAVAVNAAHARAG  60

Query  92   AAAAAVSARMRATAAALGQAARRYAGQDTAAAAALGAVRPWGTH  135
            AAAAAVSARMRATAAALGQAARRYAGQDTAAAAALGAVRPWGTH
Sbjct  61   AAAAAVSARMRATAAALGQAARRYAGQDTAAAAALGAVRPWGTH  104


>gi|308232167|ref|ZP_07415152.2| hypothetical alanine rich protein [Mycobacterium tuberculosis 
SUMu001]
 gi|308214822|gb|EFO74221.1| hypothetical alanine rich protein [Mycobacterium tuberculosis 
SUMu001]
Length=94

 Score =  181 bits (459),  Expect = 3e-44, Method: Compositional matrix adjust.
 Identities = 94/94 (100%), Positives = 94/94 (100%), Gaps = 0/94 (0%)

Query  1   MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLA  60
           MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLA
Sbjct  1   MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLA  60

Query  61  GELSAAVAPSGAVLSWQANAVAVNAAHARAGAAA  94
           GELSAAVAPSGAVLSWQANAVAVNAAHARAGAAA
Sbjct  61  GELSAAVAPSGAVLSWQANAVAVNAAHARAGAAA  94


>gi|339295420|gb|AEJ47531.1| hypothetical alanine rich protein [Mycobacterium tuberculosis 
CCDC5079]
Length=102

 Score =  181 bits (458),  Expect = 5e-44, Method: Compositional matrix adjust.
 Identities = 101/102 (99%), Positives = 102/102 (100%), Gaps = 0/102 (0%)

Query  34   VAGGTRARLRVTADGLQALAGRCATLAGELSAAVAPSGAVLSWQANAVAVNAAHARAGAA  93
            +AGGTRARLRVTADGLQALAGRCATLAGELSAAVAPSGAVLSWQANAVAVNAAHARAGAA
Sbjct  1    MAGGTRARLRVTADGLQALAGRCATLAGELSAAVAPSGAVLSWQANAVAVNAAHARAGAA  60

Query  94   AAAVSARMRATAAALGQAARRYAGQDTAAAAALGAVRPWGTH  135
            AAAVSARMRATAAALGQAARRYAGQDTAAAAALGAVRPWGTH
Sbjct  61   AAAVSARMRATAAALGQAARRYAGQDTAAAAALGAVRPWGTH  102


>gi|289575246|ref|ZP_06455473.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289539677|gb|EFD44255.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
Length=136

 Score =  174 bits (441),  Expect = 4e-42, Method: Compositional matrix adjust.
 Identities = 109/136 (81%), Positives = 113/136 (84%), Gaps = 1/136 (0%)

Query  1    MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLA  60
            MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLA
Sbjct  1    MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLA  60

Query  61   GELSAAVAPSGAVLS-WQANAVAVNAAHARAGAAAAAVSARMRATAAALGQAARRYAGQD  119
            GELSAAVAPSGAVL  W      + ++         A     +ATAAALGQAARRYAGQD
Sbjct  61   GELSAAVAPSGAVLPVWGEALDEICSSETLLIVPTPAGVLFTQATAAALGQAARRYAGQD  120

Query  120  TAAAAALGAVRPWGTH  135
            TAAAAALGAVRPWGTH
Sbjct  121  TAAAAALGAVRPWGTH  136


>gi|308374610|ref|ZP_07436722.2| hypothetical alanine rich protein [Mycobacterium tuberculosis 
SUMu006]
 gi|308341315|gb|EFP30166.1| hypothetical alanine rich protein [Mycobacterium tuberculosis 
SUMu006]
Length=74

 Score =  146 bits (368),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 74/74 (100%), Positives = 74/74 (100%), Gaps = 0/74 (0%)

Query  1   MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLA  60
           MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLA
Sbjct  1   MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLA  60

Query  61  GELSAAVAPSGAVL  74
           GELSAAVAPSGAVL
Sbjct  61  GELSAAVAPSGAVL  74


>gi|308375556|ref|ZP_07444330.2| hypothetical alanine rich protein [Mycobacterium tuberculosis 
SUMu007]
 gi|308345903|gb|EFP34754.1| hypothetical alanine rich protein [Mycobacterium tuberculosis 
SUMu007]
Length=77

 Score =  140 bits (354),  Expect = 5e-32, Method: Compositional matrix adjust.
 Identities = 71/71 (100%), Positives = 71/71 (100%), Gaps = 0/71 (0%)

Query  1   MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLA  60
           MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLA
Sbjct  1   MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLA  60

Query  61  GELSAAVAPSG  71
           GELSAAVAPSG
Sbjct  61  GELSAAVAPSG  71


>gi|289746327|ref|ZP_06505705.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289686855|gb|EFD54343.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
Length=98

 Score =  139 bits (349),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 72/88 (82%), Positives = 76/88 (87%), Gaps = 3/88 (3%)

Query  1   MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLA  60
           MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLA
Sbjct  1   MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLA  60

Query  61  GELSAAVAPS---GAVLSWQANAVAVNA  85
           GELSAAVAP      +L  + +   VN+
Sbjct  61  GELSAAVAPKLDISGILITRYDPRTVNS  88


>gi|340627557|ref|YP_004746009.1| hypothetical protein MCAN_25821 [Mycobacterium canettii CIPT 
140010059]
 gi|340005747|emb|CCC44913.1| hypothetical alanine rich protein [Mycobacterium canettii CIPT 
140010059]
Length=116

 Score =  138 bits (347),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 106/116 (92%), Positives = 109/116 (94%), Gaps = 0/116 (0%)

Query  20   VRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLAGELSAAVAPSGAVLSWQAN  79
            +R PGCP SIPGV+VA GT+ARLRVTADGLQALAGRCATLA ELSAAV PSGAVLSWQAN
Sbjct  1    MRLPGCPVSIPGVDVAEGTQARLRVTADGLQALAGRCATLADELSAAVEPSGAVLSWQAN  60

Query  80   AVAVNAAHARAGAAAAAVSARMRATAAALGQAARRYAGQDTAAAAALGAVRPWGTH  135
            AVAVNAAHARAGAAAAAVSARMRATA ALGQAARRYAGQDTAAAAALGAVRPWGT 
Sbjct  61   AVAVNAAHARAGAAAAAVSARMRATATALGQAARRYAGQDTAAAAALGAVRPWGTR  116


>gi|308369746|ref|ZP_07418917.2| hypothetical alanine rich protein [Mycobacterium tuberculosis 
SUMu002]
 gi|308326594|gb|EFP15445.1| hypothetical alanine rich protein [Mycobacterium tuberculosis 
SUMu002]
Length=69

 Score =  137 bits (346),  Expect = 4e-31, Method: Compositional matrix adjust.
 Identities = 69/69 (100%), Positives = 69/69 (100%), Gaps = 0/69 (0%)

Query  1   MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLA  60
           MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLA
Sbjct  1   MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLA  60

Query  61  GELSAAVAP  69
           GELSAAVAP
Sbjct  61  GELSAAVAP  69


>gi|289746334|ref|ZP_06505712.1| hypothetical alanine rich protein [Mycobacterium tuberculosis 
02_1987]
 gi|289686862|gb|EFD54350.1| hypothetical alanine rich protein [Mycobacterium tuberculosis 
02_1987]
Length=83

 Score =  130 bits (326),  Expect = 9e-29, Method: Compositional matrix adjust.
 Identities = 64/64 (100%), Positives = 64/64 (100%), Gaps = 0/64 (0%)

Query  1   MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLA  60
           MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLA
Sbjct  1   MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLA  60

Query  61  GELS  64
           GELS
Sbjct  61  GELS  64


>gi|308378418|ref|ZP_07482523.2| hypothetical alanine rich protein [Mycobacterium tuberculosis 
SUMu009]
 gi|308352593|gb|EFP41444.1| hypothetical alanine rich protein [Mycobacterium tuberculosis 
SUMu009]
Length=66

 Score =  125 bits (313),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 65/66 (99%), Positives = 66/66 (100%), Gaps = 0/66 (0%)

Query  20  VRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLAGELSAAVAPSGAVLSWQAN  79
           +RPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLAGELSAAVAPSGAVLSWQAN
Sbjct  1   MRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLAGELSAAVAPSGAVLSWQAN  60

Query  80  AVAVNA  85
           AVAVNA
Sbjct  61  AVAVNA  66


>gi|308379233|ref|ZP_07485589.2| hypothetical alanine rich protein [Mycobacterium tuberculosis 
SUMu010]
 gi|308357699|gb|EFP46550.1| hypothetical alanine rich protein [Mycobacterium tuberculosis 
SUMu010]
Length=65

 Score =  124 bits (310),  Expect = 7e-27, Method: Compositional matrix adjust.
 Identities = 64/65 (99%), Positives = 65/65 (100%), Gaps = 0/65 (0%)

Query  20  VRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLAGELSAAVAPSGAVLSWQAN  79
           +RPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLAGELSAAVAPSGAVLSWQAN
Sbjct  1   MRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLAGELSAAVAPSGAVLSWQAN  60

Query  80  AVAVN  84
           AVAVN
Sbjct  61  AVAVN  65


>gi|308372331|ref|ZP_07667356.1| hypothetical protein TMDG_00254 [Mycobacterium tuberculosis SUMu004]
 gi|308333633|gb|EFP22484.1| hypothetical protein TMDG_00254 [Mycobacterium tuberculosis SUMu004]
Length=60

 Score =  122 bits (305),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 60/60 (100%), Positives = 60/60 (100%), Gaps = 0/60 (0%)

Query  1   MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLA  60
           MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLA
Sbjct  1   MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLA  60


>gi|308373442|ref|ZP_07667583.1| hypothetical protein TMEG_03216 [Mycobacterium tuberculosis SUMu005]
 gi|308337659|gb|EFP26510.1| hypothetical protein TMEG_03216 [Mycobacterium tuberculosis SUMu005]
Length=59

 Score =  120 bits (302),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 59/59 (100%), Positives = 59/59 (100%), Gaps = 0/59 (0%)

Query  1   MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATL  59
           MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATL
Sbjct  1   MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATL  59


>gi|308371050|ref|ZP_07667080.1| hypothetical alanine rich protein [Mycobacterium tuberculosis 
SUMu003]
 gi|308330016|gb|EFP18867.1| hypothetical alanine rich protein [Mycobacterium tuberculosis 
SUMu003]
Length=58

 Score =  119 bits (297),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 58/58 (100%), Positives = 58/58 (100%), Gaps = 0/58 (0%)

Query  1   MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCAT  58
           MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCAT
Sbjct  1   MRRRRPPHVNAPTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCAT  58


>gi|313659475|ref|ZP_07816355.1| hypothetical protein MtubKV_13690 [Mycobacterium tuberculosis 
KZN V2475]
Length=63

 Score =  113 bits (283),  Expect = 8e-24, Method: Compositional matrix adjust.
 Identities = 62/63 (99%), Positives = 63/63 (100%), Gaps = 0/63 (0%)

Query  32  VEVAGGTRARLRVTADGLQALAGRCATLAGELSAAVAPSGAVLSWQANAVAVNAAHARAG  91
           +EVAGGTRARLRVTADGLQALAGRCATLAGELSAAVAPSGAVLSWQANAVAVNAAHARAG
Sbjct  1   MEVAGGTRARLRVTADGLQALAGRCATLAGELSAAVAPSGAVLSWQANAVAVNAAHARAG  60

Query  92  AAA  94
           AAA
Sbjct  61  AAA  63


>gi|167967000|ref|ZP_02549277.1| hypothetical protein MtubH3_02653 [Mycobacterium tuberculosis 
H37Ra]
Length=43

 Score = 79.3 bits (194),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 42/43 (98%), Positives = 43/43 (100%), Gaps = 0/43 (0%)

Query  32  VEVAGGTRARLRVTADGLQALAGRCATLAGELSAAVAPSGAVL  74
           +EVAGGTRARLRVTADGLQALAGRCATLAGELSAAVAPSGAVL
Sbjct  1   MEVAGGTRARLRVTADGLQALAGRCATLAGELSAAVAPSGAVL  43


>gi|333989958|ref|YP_004522572.1| hypothetical protein JDM601_1318 [Mycobacterium sp. JDM601]
 gi|333485926|gb|AEF35318.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=115

 Score = 54.3 bits (129),  Expect = 6e-06, Method: Compositional matrix adjust.
 Identities = 35/82 (43%), Positives = 46/82 (57%), Gaps = 1/82 (1%)

Query  38   TRARLRVTADGLQALAGRCATLAGELSAAVAPSGAVLSWQANAVAVNAAHARAGAAAAAV  97
            TR  LRV  DGL+ALA RC  LA E+ A   P+   LSWQ++  A  A  A  G     +
Sbjct  2    TRPGLRVVPDGLRALAQRCEELASEV-AVTLPTRTALSWQSSEAAATAVSAGTGRVGKIL  60

Query  98   SARMRATAAALGQAARRYAGQD  119
            ++RM+ATA+ L  AA  +   D
Sbjct  61   ASRMQATASKLTGAANDFEAMD  82


>gi|308377046|ref|ZP_07668415.1| hypothetical alanine rich protein [Mycobacterium tuberculosis 
SUMu008]
 gi|308349132|gb|EFP37983.1| hypothetical alanine rich protein [Mycobacterium tuberculosis 
SUMu008]
Length=58

 Score = 53.1 bits (126),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 24/26 (93%), Positives = 24/26 (93%), Gaps = 0/26 (0%)

Query  1   MRRRRPPHVNAPTPCDRGDVRPPGCP  26
           MRRRRPPHVNAPTPCDRGDVRPP  P
Sbjct  1   MRRRRPPHVNAPTPCDRGDVRPPDAP  26


>gi|313659476|ref|ZP_07816356.1| hypothetical protein MtubKV_13699 [Mycobacterium tuberculosis 
KZN V2475]
Length=30

 Score = 52.8 bits (125),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 30/30 (100%), Positives = 30/30 (100%), Gaps = 0/30 (0%)

Query  106  AALGQAARRYAGQDTAAAAALGAVRPWGTH  135
            AALGQAARRYAGQDTAAAAALGAVRPWGTH
Sbjct  1    AALGQAARRYAGQDTAAAAALGAVRPWGTH  30


>gi|183980512|ref|YP_001848803.1| hypothetical protein MMAR_0483 [Mycobacterium marinum M]
 gi|183173838|gb|ACC38948.1| conserved hypothetical alanine rich protein [Mycobacterium marinum 
M]
Length=108

 Score = 48.9 bits (115),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 38/103 (37%), Positives = 55/103 (54%), Gaps = 3/103 (2%)

Query  29   IPGVEVAGGTRARLRVTADGLQALAGRCATLAGELSAAVAPSGAVLSWQANAVAVNAAHA  88
            +P +   G +   LRV   G+QA+A R    AGEL++  AP+G  LS Q +A AV+AAH 
Sbjct  4    LPTLRFVGSS---LRVDTAGVQAMAWRWGIAAGELTSMDAPAGLGLSCQLSAAAVDAAHG  60

Query  89   RAGAAAAAVSARMRATAAALGQAARRYAGQDTAAAAALGAVRP  131
               A    ++ ++ A  A + QA   Y   + A+A  L AV P
Sbjct  61   EVAAFTTGLAIQVNARTAGVTQADSGYLANEAASADVLAAVAP  103


>gi|240171965|ref|ZP_04750624.1| hypothetical protein MkanA1_21805 [Mycobacterium kansasii ATCC 
12478]
Length=74

 Score = 48.1 bits (113),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 31/58 (54%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  42  LRVTADGLQALAGRCATLAGELSAAVAPSGAVLSWQANAVAVNAAHARAGAAAAAVSA  99
           LRV + GLQ +A R    AGEL+A  AP+G  LS QA+AVAV+ AHA   A +AA++A
Sbjct  5   LRVDSGGLQTMATRWGAAAGELNATAAPTGPGLSGQASAVAVDGAHADVTAFSAALAA  62


>gi|296164509|ref|ZP_06847080.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295900109|gb|EFG79544.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=99

 Score = 47.8 bits (112),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 40/91 (44%), Positives = 53/91 (59%), Gaps = 2/91 (2%)

Query  42   LRVTADGLQALAGRCATLAGELSAAVAPSGAV-LSWQANAVAVNAAHARAGAAAAAVSAR  100
            LRV +  LQA+A R     G+L  + APS A+ LS QA+A AV  AH    A  AA+SA+
Sbjct  5    LRVNSAALQAMATRWGAWVGDLHLS-APSAALGLSCQASAAAVLTAHIEVDAFMAALSAQ  63

Query  101  MRATAAALGQAARRYAGQDTAAAAALGAVRP  131
            +RA AA + +A  RY   + A+A    AV P
Sbjct  64   VRARAAHVTEADSRYNATEVASAQEEAAVVP  94


>gi|118616855|ref|YP_905187.1| hypothetical protein MUL_1134 [Mycobacterium ulcerans Agy99]
 gi|118568965|gb|ABL03716.1| conserved hypothetical alanine rich protein [Mycobacterium ulcerans 
Agy99]
Length=95

 Score = 46.6 bits (109),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 34/90 (38%), Positives = 49/90 (55%), Gaps = 0/90 (0%)

Query  42   LRVTADGLQALAGRCATLAGELSAAVAPSGAVLSWQANAVAVNAAHARAGAAAAAVSARM  101
            +RV   G+QA+A R    AGEL++  AP+G  LS Q +A AV+AAH    A    ++ ++
Sbjct  1    MRVDTAGVQAMAWRWGIAAGELTSMDAPAGLGLSCQLSAAAVDAAHGEVAAFTTGLAIQV  60

Query  102  RATAAALGQAARRYAGQDTAAAAALGAVRP  131
             A  A + QA   Y   +  +A  L AV P
Sbjct  61   NARTAGVTQADSGYLANEAVSADVLAAVAP  90


>gi|183980509|ref|YP_001848800.1| hypothetical protein MMAR_0480 [Mycobacterium marinum M]
 gi|183173835|gb|ACC38945.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=97

 Score = 45.1 bits (105),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 32/91 (36%), Positives = 48/91 (53%), Gaps = 1/91 (1%)

Query  41   RLRVTADGLQALAGRCATLAGELSAAVAPSGAVLSWQANAVAVNAAHARAGAAAAAVSAR  100
            +LRV    L+A AG  +  +  L+A   PS     +Q    AV++AH   G AAAA++  
Sbjct  5    QLRVEVPQLEATAGEWSQRSATLAALTPPSPG-QPFQPTTAAVSSAHTAVGLAAAALTTH  63

Query  101  MRATAAALGQAARRYAGQDTAAAAALGAVRP  131
             + T  A+   A RYA  +T + A + AV+P
Sbjct  64   TQETIVAVESGATRYATNETTSPAEMAAVQP  94


>gi|118466147|ref|YP_882328.1| hypothetical protein MAV_3144 [Mycobacterium avium 104]
 gi|118167434|gb|ABK68331.1| hypothetical alanine rich protein [Mycobacterium avium 104]
Length=89

 Score = 44.7 bits (104),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 29/68 (43%), Positives = 41/68 (61%), Gaps = 0/68 (0%)

Query  52   LAGRCATLAGELSAAVAPSGAVLSWQANAVAVNAAHARAGAAAAAVSARMRATAAALGQA  111
            +AGR AT AGEL    AP+ + L  QA+  AVNAAHA   A  A ++ R++  +  + +A
Sbjct  1    MAGRWATAAGELHVPAAPTASGLPSQASMAAVNAAHADVTAFTAGLATRVQTHSRRVAEA  60

Query  112  ARRYAGQD  119
             RRYA  +
Sbjct  61   GRRYASNE  68


>gi|118464007|ref|YP_879780.1| hypothetical protein MAV_0499 [Mycobacterium avium 104]
 gi|118165294|gb|ABK66191.1| hypothetical alanine rich protein [Mycobacterium avium 104]
Length=122

 Score = 38.5 bits (88),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 27/87 (32%), Positives = 45/87 (52%), Gaps = 4/87 (4%)

Query  49   LQALAGRCATLAGELSAAVAPSGAVLSWQANAVAVNAAHARAGAAAAAVSARMRATAAAL  108
            ++  A RC  L+G+++ A+ P+  + +WQ+   A +  +A       A  +RM A  + L
Sbjct  1    MREFAQRCEALSGQVAPAL-PAETISAWQSTGAAASTVNAGMRTVGTACKSRMTANGSKL  59

Query  109  GQAARRYAGQDTAAAAALGAVRPWGTH  135
             +AA  Y  QD  +A  L AV   G+H
Sbjct  60   IKAASAYQNQDDHSAQRLTAV---GSH  83


>gi|296170641|ref|ZP_06852216.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295894630|gb|EFG74364.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=96

 Score = 36.6 bits (83),  Expect = 1.2, Method: Compositional matrix adjust.
 Identities = 33/89 (38%), Positives = 48/89 (54%), Gaps = 1/89 (1%)

Query  41   RLRVTADGLQALAGRCATLAGELSAAVAPSGAVLSWQANAVAVNAAHARAGAAAAAVSAR  100
            +LRV    +Q ++ R      EL AAV P+   L+ Q ++ AV A HA  G AA ++  R
Sbjct  3    QLRVAVPAVQLMSVRWRAQVDELVAAVPPALG-LACQPSSGAVRAGHAAVGLAATSLMGR  61

Query  101  MRATAAALGQAARRYAGQDTAAAAALGAV  129
            MR +AA +  A   YA  +T +AA   A+
Sbjct  62   MRDSAAKVAAANSGYAANETNSAAEFVAI  90


>gi|206590627|emb|CAQ37589.1| hemagglutinin-related protein [Ralstonia solanacearum MolK2]
Length=3231

 Score = 34.7 bits (78),  Expect = 5.3, Method: Compositional matrix adjust.
 Identities = 30/76 (40%), Positives = 39/76 (52%), Gaps = 8/76 (10%)

Query  11   APTPCDRGDVRPPGCPASIPGVEVAGGTRARLRVTADGLQALAGRCATLAGELSAAVAPS  70
            AP   ++G +  PG       V +AGGT     V A G  A+AG   T AG + A V  +
Sbjct  293  APNVTNQGAISTPGN------VSIAGGTANTGSVVAGGNVAIAGAQITNAGTIGAGVDAN  346

Query  71   GAVLSWQANAVAVNAA  86
            G V   QA +VA+NAA
Sbjct  347  GGVT--QAGSVALNAA  360



Lambda     K      H
   0.318    0.127    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 129391415580


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40