BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2542

Length=403
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609679|ref|NP_217058.1|  hypothetical protein Rv2542 [Mycoba...   799    0.0   
gi|31793724|ref|NP_856217.1|  hypothetical protein Mb2571 [Mycoba...   798    0.0   
gi|254551592|ref|ZP_05142039.1|  hypothetical protein Mtube_14227...   795    0.0   
gi|254232663|ref|ZP_04925990.1|  conserved hypothetical protein [...   768    0.0   
gi|307085228|ref|ZP_07494341.1|  hypothetical protein TMLG_02269 ...   739    0.0   
gi|289754650|ref|ZP_06514028.1|  conserved hypothetical protein [...   729    0.0   
gi|308369747|ref|ZP_07418918.2|  hypothetical protein TMBG_01081 ...   700    0.0   
gi|340627558|ref|YP_004746010.1|  hypothetical protein MCAN_25831...   677    0.0   
gi|15842076|ref|NP_337113.1|  hypothetical protein MT2616 [Mycoba...   531    1e-148
gi|240171302|ref|ZP_04749961.1|  hypothetical protein MkanA1_1846...   169    6e-40 
gi|183981926|ref|YP_001850217.1|  hypothetical protein MMAR_1913 ...   162    1e-37 
gi|323718643|gb|EGB27807.1|  hypothetical protein TMMG_02803 [Myc...   160    3e-37 
gi|339295646|gb|AEJ47757.1|  hypothetical protein CCDC5079_2567 [...   160    3e-37 
gi|307085494|ref|ZP_07494607.1|  hypothetical protein TMLG_02511 ...   160    3e-37 
gi|289575495|ref|ZP_06455722.1|  conserved hypothetical protein [...   160    3e-37 
gi|306785609|ref|ZP_07423931.1|  hypothetical protein TMCG_02042 ...   160    3e-37 
gi|289758923|ref|ZP_06518301.1|  conserved hypothetical protein [...   160    3e-37 
gi|15842335|ref|NP_337372.1|  hypothetical protein MT2866 [Mycoba...   160    3e-37 
gi|15609934|ref|NP_217313.1|  hypothetical protein Rv2797c [Mycob...   160    3e-37 
gi|289444345|ref|ZP_06434089.1|  conserved hypothetical protein [...   144    2e-32 
gi|289448455|ref|ZP_06438199.1|  conserved hypothetical protein [...   138    2e-30 
gi|342858918|ref|ZP_08715572.1|  hypothetical protein MCOL_08578 ...   131    2e-28 
gi|254775904|ref|ZP_05217420.1|  hypothetical protein MaviaA2_147...   129    9e-28 
gi|229494524|ref|ZP_04388287.1|  conserved hypothetical protein [...   125    1e-26 
gi|333988787|ref|YP_004521401.1|  hypothetical protein JDM601_014...   125    1e-26 
gi|111019228|ref|YP_702200.1|  hypothetical protein RHA1_ro02235 ...   124    4e-26 
gi|296169825|ref|ZP_06851439.1|  conserved hypothetical protein [...   123    6e-26 
gi|296393635|ref|YP_003658519.1|  hypothetical protein Srot_1217 ...   121    2e-25 
gi|226361364|ref|YP_002779142.1|  hypothetical protein ROP_19500 ...   121    2e-25 
gi|226304390|ref|YP_002764348.1|  hypothetical protein RER_09010 ...   120    3e-25 
gi|296392595|ref|YP_003657479.1|  hypothetical protein Srot_0159 ...   120    4e-25 
gi|262202342|ref|YP_003273550.1|  hypothetical protein Gbro_2415 ...   117    3e-24 
gi|317507796|ref|ZP_07965498.1|  hypothetical protein HMPREF9336_...   117    4e-24 
gi|317509263|ref|ZP_07966884.1|  hypothetical protein HMPREF9336_...   117    4e-24 
gi|296392493|ref|YP_003657377.1|  hypothetical protein Srot_0053 ...   113    7e-23 
gi|118467794|ref|YP_890594.1|  hypothetical protein MSMEG_6381 [M...   107    3e-21 
gi|289751454|ref|ZP_06510832.1|  conserved hypothetical protein [...   107    5e-21 
gi|296395288|ref|YP_003660172.1|  hypothetical protein Srot_2912 ...   106    7e-21 
gi|262200424|ref|YP_003271632.1|  hypothetical protein Gbro_0405 ...   106    8e-21 
gi|134097612|ref|YP_001103273.1|  hypothetical protein SACE_1016 ...   103    4e-20 
gi|293190636|ref|ZP_06608927.1|  conserved hypothetical protein [...  97.1    5e-18 
gi|240169358|ref|ZP_04748017.1|  hypothetical protein MkanA1_0859...  94.4    3e-17 
gi|323720675|gb|EGB29753.1|  hypothetical protein TMMG_02955 [Myc...  94.4    3e-17 
gi|308374145|ref|ZP_07435048.2|  hypothetical protein TMFG_02779 ...  93.6    5e-17 
gi|148822172|ref|YP_001286926.1|  hypothetical protein TBFG_10981...  93.6    5e-17 
gi|15608103|ref|NP_215478.1|  hypothetical protein Rv0963c [Mycob...  93.2    6e-17 
gi|121636889|ref|YP_977112.1|  hypothetical protein BCG_1017c [My...  93.2    6e-17 
gi|315605643|ref|ZP_07880676.1|  conserved hypothetical protein [...  93.2    8e-17 
gi|229821763|ref|YP_002883289.1|  hypothetical protein Bcav_3284 ...  92.4    1e-16 
gi|289761098|ref|ZP_06520476.1|  conserved hypothetical protein [...  92.4    1e-16 


>gi|15609679|ref|NP_217058.1| hypothetical protein Rv2542 [Mycobacterium tuberculosis H37Rv]
 gi|148662380|ref|YP_001283903.1| hypothetical protein MRA_2570 [Mycobacterium tuberculosis H37Ra]
 gi|167968850|ref|ZP_02551127.1| hypothetical protein MtubH3_12785 [Mycobacterium tuberculosis 
H37Ra]
 gi|1781060|emb|CAB06196.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|148506532|gb|ABQ74341.1| hypothetical protein MRA_2570 [Mycobacterium tuberculosis H37Ra]
Length=403

 Score =  799 bits (2064),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 402/403 (99%), Positives = 403/403 (100%), Gaps = 0/403 (0%)

Query  1    VLDAVSDARRDGFAVGEDYTVTDRSTGGSRQQRAARLGQAQGHADFIRHRVGALLATDRD  60
            +LDAVSDARRDGFAVGEDYTVTDRSTGGSRQQRAARLGQAQGHADFIRHRVGALLATDRD
Sbjct  1    MLDAVSDARRDGFAVGEDYTVTDRSTGGSRQQRAARLGQAQGHADFIRHRVGALLATDRD  60

Query  61   IATRVSAATQGLDELAFEDVPGVDTPAEDGVQAVDFRQAPPPGAPGGMSSGDIDAIDAAN  120
            IATRVSAATQGLDELAFEDVPGVDTPAEDGVQAVDFRQAPPPGAPGGMSSGDIDAIDAAN
Sbjct  61   IATRVSAATQGLDELAFEDVPGVDTPAEDGVQAVDFRQAPPPGAPGGMSSGDIDAIDAAN  120

Query  121  RALLQDMLAEYSRLPDGQVKTDRLADIAAIQEALRVPDSHLIYVARPDDPADMIPAVTAV  180
            RALLQDMLAEYSRLPDGQVKTDRLADIAAIQEALRVPDSHLIYVARPDDPADMIPAVTAV
Sbjct  121  RALLQDMLAEYSRLPDGQVKTDRLADIAAIQEALRVPDSHLIYVARPDDPADMIPAVTAV  180

Query  181  GDPFTADHVSVTVPGVSGTTRQTIATMTQETRGLREEARVIAHSVGESENVATIAWVGYQ  240
            GDPFTADHVSVTVPGVSGTTRQTIATMTQETRGLREEARVIAHSVGESENVATIAWVGYQ
Sbjct  181  GDPFTADHVSVTVPGVSGTTRQTIATMTQETRGLREEARVIAHSVGESENVATIAWVGYQ  240

Query  241  PPPVLASWNTVDDDLAQAGAPKLEAFLRDLQAGSHNPGHTTALFGHSYGSLLSGIALKDG  300
            PPPVLASWNTVDDDLAQAGAPKLEAFLRDLQAGSHNPGHTTALFGHSYGSLLSGIALKDG
Sbjct  241  PPPVLASWNTVDDDLAQAGAPKLEAFLRDLQAGSHNPGHTTALFGHSYGSLLSGIALKDG  300

Query  301  ASSLVDNAVLYGSPGFDATSPAKLGMNDHNFFVMTTPDDPIRYPARLAPLHGWGSDGADT  360
            ASSLVDNAVLYGSPGFDATSPAKLGMNDHNFFVMTTPDDPIRYPARLAPLHGWGSDGADT
Sbjct  301  ASSLVDNAVLYGSPGFDATSPAKLGMNDHNFFVMTTPDDPIRYPARLAPLHGWGSDGADT  360

Query  361  IGTVGRQGTPARVGIRPQRDHRRIPGPLPLHPSADRRGIHSAG  403
            IGTVGRQGTPARVGIRPQRDHRRIPGPLPLHPSADRRGIHSAG
Sbjct  361  IGTVGRQGTPARVGIRPQRDHRRIPGPLPLHPSADRRGIHSAG  403


>gi|31793724|ref|NP_856217.1| hypothetical protein Mb2571 [Mycobacterium bovis AF2122/97]
 gi|121638426|ref|YP_978650.1| hypothetical protein BCG_2564 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|148823737|ref|YP_001288491.1| hypothetical protein TBFG_12562 [Mycobacterium tuberculosis F11]
 54 more sequence titles
 
gi|224990920|ref|YP_002645607.1| hypothetical protein JTY_2558 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253798378|ref|YP_003031379.1| hypothetical protein TBMG_01431 [Mycobacterium tuberculosis KZN 
1435]
 gi|254366746|ref|ZP_04982789.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|289444077|ref|ZP_06433821.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289448190|ref|ZP_06437934.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289553669|ref|ZP_06442879.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|289570706|ref|ZP_06450933.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289575247|ref|ZP_06455474.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289746335|ref|ZP_06505713.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289751160|ref|ZP_06510538.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289754657|ref|ZP_06514035.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289758671|ref|ZP_06518049.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289762710|ref|ZP_06522088.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|294994348|ref|ZP_06800039.1| hypothetical protein Mtub2_07488 [Mycobacterium tuberculosis 
210]
 gi|297635152|ref|ZP_06952932.1| hypothetical protein MtubK4_13570 [Mycobacterium tuberculosis 
KZN 4207]
 gi|297732144|ref|ZP_06961262.1| hypothetical protein MtubKR_13695 [Mycobacterium tuberculosis 
KZN R506]
 gi|298526015|ref|ZP_07013424.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|306776817|ref|ZP_07415154.1| hypothetical protein TMAG_02346 [Mycobacterium tuberculosis SUMu001]
 gi|306789943|ref|ZP_07428265.1| hypothetical protein TMDG_00255 [Mycobacterium tuberculosis SUMu004]
 gi|306794024|ref|ZP_07432326.1| hypothetical protein TMEG_03217 [Mycobacterium tuberculosis SUMu005]
 gi|306798422|ref|ZP_07436724.1| hypothetical protein TMFG_03769 [Mycobacterium tuberculosis SUMu006]
 gi|307080641|ref|ZP_07489811.1| hypothetical protein TMKG_02970 [Mycobacterium tuberculosis SUMu011]
 gi|313659478|ref|ZP_07816358.1| hypothetical protein MtubKV_13709 [Mycobacterium tuberculosis 
KZN V2475]
 gi|339632569|ref|YP_004724211.1| hypothetical protein MAF_25580 [Mycobacterium africanum GM041182]
 gi|31619318|emb|CAD94756.1| CONSERVED HYPOTHETICAL PROTEIN [SECOND PART] [Mycobacterium bovis 
AF2122/97]
 gi|121494074|emb|CAL72552.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|134152257|gb|EBA44302.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|148722264|gb|ABR06889.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|224774033|dbj|BAH26839.1| hypothetical protein JTY_2558 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253319881|gb|ACT24484.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
1435]
 gi|289416996|gb|EFD14236.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289421148|gb|EFD18349.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289438301|gb|EFD20794.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|289539678|gb|EFD44256.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289544460|gb|EFD48108.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289686863|gb|EFD54351.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289691747|gb|EFD59176.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289695244|gb|EFD62673.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289710216|gb|EFD74232.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|289714235|gb|EFD78247.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298495809|gb|EFI31103.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308214744|gb|EFO74143.1| hypothetical protein TMAG_02346 [Mycobacterium tuberculosis SUMu001]
 gi|308333553|gb|EFP22404.1| hypothetical protein TMDG_00255 [Mycobacterium tuberculosis SUMu004]
 gi|308337581|gb|EFP26432.1| hypothetical protein TMEG_03217 [Mycobacterium tuberculosis SUMu005]
 gi|308341245|gb|EFP30096.1| hypothetical protein TMFG_03769 [Mycobacterium tuberculosis SUMu006]
 gi|308361562|gb|EFP50413.1| hypothetical protein TMKG_02970 [Mycobacterium tuberculosis SUMu011]
 gi|323718813|gb|EGB27969.1| hypothetical protein TMMG_02551 [Mycobacterium tuberculosis CDC1551A]
 gi|326904157|gb|EGE51090.1| hypothetical protein TBPG_02050 [Mycobacterium tuberculosis W-148]
 gi|328458148|gb|AEB03571.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
4207]
 gi|339295421|gb|AEJ47532.1| hypothetical protein CCDC5079_2342 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339299041|gb|AEJ51151.1| hypothetical protein CCDC5180_2314 [Mycobacterium tuberculosis 
CCDC5180]
 gi|339331925|emb|CCC27628.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
 gi|341602464|emb|CCC65140.1| conserved hypothetical protein [Mycobacterium bovis BCG str. 
Moreau RDJ]
 gi|344220370|gb|AEN01001.1| hypothetical protein MTCTRI2_2591 [Mycobacterium tuberculosis 
CTRI-2]
Length=403

 Score =  798 bits (2061),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/403 (99%), Positives = 402/403 (99%), Gaps = 0/403 (0%)

Query  1    VLDAVSDARRDGFAVGEDYTVTDRSTGGSRQQRAARLGQAQGHADFIRHRVGALLATDRD  60
            +LDAVSDARRDGFAVGEDYTVTDRSTGGSRQQRAARLGQAQGHADFIRHRVGALLATDRD
Sbjct  1    MLDAVSDARRDGFAVGEDYTVTDRSTGGSRQQRAARLGQAQGHADFIRHRVGALLATDRD  60

Query  61   IATRVSAATQGLDELAFEDVPGVDTPAEDGVQAVDFRQAPPPGAPGGMSSGDIDAIDAAN  120
            IATRVSAATQGLDELAFEDVPGVDTPAEDGVQAVDFRQAPPPGAPGGMSSGDIDAIDAAN
Sbjct  61   IATRVSAATQGLDELAFEDVPGVDTPAEDGVQAVDFRQAPPPGAPGGMSSGDIDAIDAAN  120

Query  121  RALLQDMLAEYSRLPDGQVKTDRLADIAAIQEALRVPDSHLIYVARPDDPADMIPAVTAV  180
            RALLQDMLAEYSRLPDGQVKTDRLADIAAIQEALRVPDSHLIYVARPDDPADMIPAVTAV
Sbjct  121  RALLQDMLAEYSRLPDGQVKTDRLADIAAIQEALRVPDSHLIYVARPDDPADMIPAVTAV  180

Query  181  GDPFTADHVSVTVPGVSGTTRQTIATMTQETRGLREEARVIAHSVGESENVATIAWVGYQ  240
            GDPFTADHVSVTVPGVSGTTRQTIATMTQE RGLREEARVIAHSVGESENVATIAWVGYQ
Sbjct  181  GDPFTADHVSVTVPGVSGTTRQTIATMTQEARGLREEARVIAHSVGESENVATIAWVGYQ  240

Query  241  PPPVLASWNTVDDDLAQAGAPKLEAFLRDLQAGSHNPGHTTALFGHSYGSLLSGIALKDG  300
            PPPVLASWNTVDDDLAQAGAPKLEAFLRDLQAGSHNPGHTTALFGHSYGSLLSGIALKDG
Sbjct  241  PPPVLASWNTVDDDLAQAGAPKLEAFLRDLQAGSHNPGHTTALFGHSYGSLLSGIALKDG  300

Query  301  ASSLVDNAVLYGSPGFDATSPAKLGMNDHNFFVMTTPDDPIRYPARLAPLHGWGSDGADT  360
            ASSLVDNAVLYGSPGFDATSPAKLGMNDHNFFVMTTPDDPIRYPARLAPLHGWGSDGADT
Sbjct  301  ASSLVDNAVLYGSPGFDATSPAKLGMNDHNFFVMTTPDDPIRYPARLAPLHGWGSDGADT  360

Query  361  IGTVGRQGTPARVGIRPQRDHRRIPGPLPLHPSADRRGIHSAG  403
            IGTVGRQGTPARVGIRPQRDHRRIPGPLPLHPSADRRGIHSAG
Sbjct  361  IGTVGRQGTPARVGIRPQRDHRRIPGPLPLHPSADRRGIHSAG  403


>gi|254551592|ref|ZP_05142039.1| hypothetical protein Mtube_14227 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
Length=403

 Score =  795 bits (2054),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 400/403 (99%), Positives = 401/403 (99%), Gaps = 0/403 (0%)

Query  1    VLDAVSDARRDGFAVGEDYTVTDRSTGGSRQQRAARLGQAQGHADFIRHRVGALLATDRD  60
            +LDAVSDARRDGFAVGEDYTVTDRSTGGSRQQRAARLGQAQGHADFIRHRVGALLATDRD
Sbjct  1    MLDAVSDARRDGFAVGEDYTVTDRSTGGSRQQRAARLGQAQGHADFIRHRVGALLATDRD  60

Query  61   IATRVSAATQGLDELAFEDVPGVDTPAEDGVQAVDFRQAPPPGAPGGMSSGDIDAIDAAN  120
            IATRVSAATQGLDELAFEDVPGVDTPAEDGVQAVDFRQAPPPGAPGGMSSGDIDAIDAAN
Sbjct  61   IATRVSAATQGLDELAFEDVPGVDTPAEDGVQAVDFRQAPPPGAPGGMSSGDIDAIDAAN  120

Query  121  RALLQDMLAEYSRLPDGQVKTDRLADIAAIQEALRVPDSHLIYVARPDDPADMIPAVTAV  180
            RALLQDMLAEYSRLPDGQVKTDRLADIAAIQEALRVPDSHLIYVARPDDPADMIPAVTAV
Sbjct  121  RALLQDMLAEYSRLPDGQVKTDRLADIAAIQEALRVPDSHLIYVARPDDPADMIPAVTAV  180

Query  181  GDPFTADHVSVTVPGVSGTTRQTIATMTQETRGLREEARVIAHSVGESENVATIAWVGYQ  240
            GDPFTADHVSVTVPGVSGTTRQTIATMTQE RGLREEARVIAHSVGESENVATIAWVGYQ
Sbjct  181  GDPFTADHVSVTVPGVSGTTRQTIATMTQEARGLREEARVIAHSVGESENVATIAWVGYQ  240

Query  241  PPPVLASWNTVDDDLAQAGAPKLEAFLRDLQAGSHNPGHTTALFGHSYGSLLSGIALKDG  300
            PPPVLASWNTVDDDLAQAGAPKLEAFLRDLQAGSHNPGHTTALFGHSYGSLLSGIALKDG
Sbjct  241  PPPVLASWNTVDDDLAQAGAPKLEAFLRDLQAGSHNPGHTTALFGHSYGSLLSGIALKDG  300

Query  301  ASSLVDNAVLYGSPGFDATSPAKLGMNDHNFFVMTTPDDPIRYPARLAPLHGWGSDGADT  360
            ASSLVDNAVLYGSPGFDATSPAKLGMNDHNFFVMTTPDDPIRYPARLAPLHGWGSDGADT
Sbjct  301  ASSLVDNAVLYGSPGFDATSPAKLGMNDHNFFVMTTPDDPIRYPARLAPLHGWGSDGADT  360

Query  361  IGTVGRQGTPARVGIRPQRDHRRIPGPLPLHPSADRRGIHSAG  403
            IG VGRQGTPARVGIRPQRDHRRIPGPLPLHPSADRRGIHSAG
Sbjct  361  IGAVGRQGTPARVGIRPQRDHRRIPGPLPLHPSADRRGIHSAG  403


>gi|254232663|ref|ZP_04925990.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|124601722|gb|EAY60732.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
Length=398

 Score =  768 bits (1984),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 387/394 (99%), Positives = 390/394 (99%), Gaps = 0/394 (0%)

Query  10   RDGFAVGEDYTVTDRSTGGSRQQRAARLGQAQGHADFIRHRVGALLATDRDIATRVSAAT  69
            RD  +VGE+ TVTDRSTGGSRQQRAAR+GQAQGHADFIRHRVGALLATDRDIATRVSAAT
Sbjct  5    RDWVSVGEEDTVTDRSTGGSRQQRAARVGQAQGHADFIRHRVGALLATDRDIATRVSAAT  64

Query  70   QGLDELAFEDVPGVDTPAEDGVQAVDFRQAPPPGAPGGMSSGDIDAIDAANRALLQDMLA  129
            QGLDELAFEDVPGVDTPAEDGVQAVDFRQAPPPGAPGGMSSGDIDAIDAANRALLQDMLA
Sbjct  65   QGLDELAFEDVPGVDTPAEDGVQAVDFRQAPPPGAPGGMSSGDIDAIDAANRALLQDMLA  124

Query  130  EYSRLPDGQVKTDRLADIAAIQEALRVPDSHLIYVARPDDPADMIPAVTAVGDPFTADHV  189
            EYSRLPDGQVKTDRLADIAAIQEALRVPDSHLIYVARPDDPADMIPAVTAVGDPFTADHV
Sbjct  125  EYSRLPDGQVKTDRLADIAAIQEALRVPDSHLIYVARPDDPADMIPAVTAVGDPFTADHV  184

Query  190  SVTVPGVSGTTRQTIATMTQETRGLREEARVIAHSVGESENVATIAWVGYQPPPVLASWN  249
            SVTVPGVSGTTRQTIATMTQE RGLREEARVIAHSVGESENVATIAWVGYQPPPVLASWN
Sbjct  185  SVTVPGVSGTTRQTIATMTQEARGLREEARVIAHSVGESENVATIAWVGYQPPPVLASWN  244

Query  250  TVDDDLAQAGAPKLEAFLRDLQAGSHNPGHTTALFGHSYGSLLSGIALKDGASSLVDNAV  309
            TVDDDLAQAGAPKLEAFLRDLQAGSHNPGHTTALFGHSYGSLLSGIALKDGASSLVDNAV
Sbjct  245  TVDDDLAQAGAPKLEAFLRDLQAGSHNPGHTTALFGHSYGSLLSGIALKDGASSLVDNAV  304

Query  310  LYGSPGFDATSPAKLGMNDHNFFVMTTPDDPIRYPARLAPLHGWGSDGADTIGTVGRQGT  369
            LYGSPGFDATSPAKLGMNDHNFFVMTTPDDPIRYPARLAPLHGWGSDGADTIGTVGRQGT
Sbjct  305  LYGSPGFDATSPAKLGMNDHNFFVMTTPDDPIRYPARLAPLHGWGSDGADTIGTVGRQGT  364

Query  370  PARVGIRPQRDHRRIPGPLPLHPSADRRGIHSAG  403
            PARVGIRPQRDHRRIPGPLPLHPSADRRGIHSAG
Sbjct  365  PARVGIRPQRDHRRIPGPLPLHPSADRRGIHSAG  398


>gi|307085228|ref|ZP_07494341.1| hypothetical protein TMLG_02269 [Mycobacterium tuberculosis SUMu012]
 gi|308365183|gb|EFP54034.1| hypothetical protein TMLG_02269 [Mycobacterium tuberculosis SUMu012]
Length=446

 Score =  739 bits (1909),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 373/379 (99%), Positives = 374/379 (99%), Gaps = 0/379 (0%)

Query  1    VLDAVSDARRDGFAVGEDYTVTDRSTGGSRQQRAARLGQAQGHADFIRHRVGALLATDRD  60
            +LDAVSDARRDGFAVGEDYTVTDRSTGGSRQQRAARLGQAQGHADFIRHRVGALLATDRD
Sbjct  1    MLDAVSDARRDGFAVGEDYTVTDRSTGGSRQQRAARLGQAQGHADFIRHRVGALLATDRD  60

Query  61   IATRVSAATQGLDELAFEDVPGVDTPAEDGVQAVDFRQAPPPGAPGGMSSGDIDAIDAAN  120
            IATRVSAATQGLDELAFEDVPGVDTPAEDGVQAVDFRQAPPPGAPGGMSSGDIDAIDAAN
Sbjct  61   IATRVSAATQGLDELAFEDVPGVDTPAEDGVQAVDFRQAPPPGAPGGMSSGDIDAIDAAN  120

Query  121  RALLQDMLAEYSRLPDGQVKTDRLADIAAIQEALRVPDSHLIYVARPDDPADMIPAVTAV  180
            RALLQDMLAEYSRLPDGQVKTDRLADIAAIQEALRVPDSHLIYVARPDDPADMIPAVTAV
Sbjct  121  RALLQDMLAEYSRLPDGQVKTDRLADIAAIQEALRVPDSHLIYVARPDDPADMIPAVTAV  180

Query  181  GDPFTADHVSVTVPGVSGTTRQTIATMTQETRGLREEARVIAHSVGESENVATIAWVGYQ  240
            GDPFTADHVSVTVPGVSGTTRQTIATMTQETRGLREEARVIAHSVGESENVATIAWVGYQ
Sbjct  181  GDPFTADHVSVTVPGVSGTTRQTIATMTQETRGLREEARVIAHSVGESENVATIAWVGYQ  240

Query  241  PPPVLASWNTVDDDLAQAGAPKLEAFLRDLQAGSHNPGHTTALFGHSYGSLLSGIALKDG  300
            PPPVLASWNTVDDDLAQAGAPKLEAFLRDLQAGSHNPGHTTALFGHSYGSLLSGIALKDG
Sbjct  241  PPPVLASWNTVDDDLAQAGAPKLEAFLRDLQAGSHNPGHTTALFGHSYGSLLSGIALKDG  300

Query  301  ASSLVDNAVLYGSPGFDATSPAKLGMNDHNFFVMTTPDDPIRYPARLAPLHGWGSDGADT  360
            ASSLVDNAVLYGSPGFDATSPAKLGMNDHNFFVMTTPDDPIRYPARLAPLHGWGSDGADT
Sbjct  301  ASSLVDNAVLYGSPGFDATSPAKLGMNDHNFFVMTTPDDPIRYPARLAPLHGWGSDGADT  360

Query  361  IGTVGRQGTPARVGIRPQR  379
            IGTVGRQGTPAR G  P  
Sbjct  361  IGTVGRQGTPARWGSDPNE  379


>gi|289754650|ref|ZP_06514028.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289695237|gb|EFD62666.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
Length=367

 Score =  729 bits (1883),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 365/367 (99%), Positives = 366/367 (99%), Gaps = 0/367 (0%)

Query  37   LGQAQGHADFIRHRVGALLATDRDIATRVSAATQGLDELAFEDVPGVDTPAEDGVQAVDF  96
            +GQAQGHADFIRHRVGALLATDRDIATRVSAATQGLDELAFEDVPGVDTPAEDGVQAVDF
Sbjct  1    MGQAQGHADFIRHRVGALLATDRDIATRVSAATQGLDELAFEDVPGVDTPAEDGVQAVDF  60

Query  97   RQAPPPGAPGGMSSGDIDAIDAANRALLQDMLAEYSRLPDGQVKTDRLADIAAIQEALRV  156
            RQAPPPGAPGGMSSGDIDAIDAANRALLQDMLAEYSRLPDGQVKTDRLADIAAIQEALRV
Sbjct  61   RQAPPPGAPGGMSSGDIDAIDAANRALLQDMLAEYSRLPDGQVKTDRLADIAAIQEALRV  120

Query  157  PDSHLIYVARPDDPADMIPAVTAVGDPFTADHVSVTVPGVSGTTRQTIATMTQETRGLRE  216
            PDSHLIYVARPDDPADMIPAVTAVGDPFTADHVSVTVPGVSGTTRQTIATMTQE RGLRE
Sbjct  121  PDSHLIYVARPDDPADMIPAVTAVGDPFTADHVSVTVPGVSGTTRQTIATMTQEARGLRE  180

Query  217  EARVIAHSVGESENVATIAWVGYQPPPVLASWNTVDDDLAQAGAPKLEAFLRDLQAGSHN  276
            EARVIAHSVGESENVATIAWVGYQPPPVLASWNTVDDDLAQAGAPKLEAFLRDLQAGSHN
Sbjct  181  EARVIAHSVGESENVATIAWVGYQPPPVLASWNTVDDDLAQAGAPKLEAFLRDLQAGSHN  240

Query  277  PGHTTALFGHSYGSLLSGIALKDGASSLVDNAVLYGSPGFDATSPAKLGMNDHNFFVMTT  336
            PGHTTALFGHSYGSLLSGIALKDGASSLVDNAVLYGSPGFDATSPAKLGMNDHNFFVMTT
Sbjct  241  PGHTTALFGHSYGSLLSGIALKDGASSLVDNAVLYGSPGFDATSPAKLGMNDHNFFVMTT  300

Query  337  PDDPIRYPARLAPLHGWGSDGADTIGTVGRQGTPARVGIRPQRDHRRIPGPLPLHPSADR  396
            PDDPIRYPARLAPLHGWGSDGADTIGTVGRQGTPARVGIRPQRDHRRIPGPLPLHPSADR
Sbjct  301  PDDPIRYPARLAPLHGWGSDGADTIGTVGRQGTPARVGIRPQRDHRRIPGPLPLHPSADR  360

Query  397  RGIHSAG  403
            RGIHSAG
Sbjct  361  RGIHSAG  367


>gi|308369747|ref|ZP_07418918.2| hypothetical protein TMBG_01081 [Mycobacterium tuberculosis SUMu002]
 gi|308371051|ref|ZP_07423666.2| hypothetical protein TMCG_01786 [Mycobacterium tuberculosis SUMu003]
 gi|308375555|ref|ZP_07444328.2| hypothetical protein TMGG_02332 [Mycobacterium tuberculosis SUMu007]
 9 more sequence titles
 
gi|308377047|ref|ZP_07440969.2| hypothetical protein TMHG_01735 [Mycobacterium tuberculosis SUMu008]
 gi|308378417|ref|ZP_07482521.2| hypothetical protein TMIG_03356 [Mycobacterium tuberculosis SUMu009]
 gi|308379234|ref|ZP_07485591.2| hypothetical protein TMJG_01521 [Mycobacterium tuberculosis SUMu010]
 gi|308326564|gb|EFP15415.1| hypothetical protein TMBG_01081 [Mycobacterium tuberculosis SUMu002]
 gi|308329937|gb|EFP18788.1| hypothetical protein TMCG_01786 [Mycobacterium tuberculosis SUMu003]
 gi|308345980|gb|EFP34831.1| hypothetical protein TMGG_02332 [Mycobacterium tuberculosis SUMu007]
 gi|308349053|gb|EFP37904.1| hypothetical protein TMHG_01735 [Mycobacterium tuberculosis SUMu008]
 gi|308352668|gb|EFP41519.1| hypothetical protein TMIG_03356 [Mycobacterium tuberculosis SUMu009]
 gi|308357621|gb|EFP46472.1| hypothetical protein TMJG_01521 [Mycobacterium tuberculosis SUMu010]
Length=353

 Score =  700 bits (1806),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 351/353 (99%), Positives = 352/353 (99%), Gaps = 0/353 (0%)

Query  51   VGALLATDRDIATRVSAATQGLDELAFEDVPGVDTPAEDGVQAVDFRQAPPPGAPGGMSS  110
            +GALLATDRDIATRVSAATQGLDELAFEDVPGVDTPAEDGVQAVDFRQAPPPGAPGGMSS
Sbjct  1    MGALLATDRDIATRVSAATQGLDELAFEDVPGVDTPAEDGVQAVDFRQAPPPGAPGGMSS  60

Query  111  GDIDAIDAANRALLQDMLAEYSRLPDGQVKTDRLADIAAIQEALRVPDSHLIYVARPDDP  170
            GDIDAIDAANRALLQDMLAEYSRLPDGQVKTDRLADIAAIQEALRVPDSHLIYVARPDDP
Sbjct  61   GDIDAIDAANRALLQDMLAEYSRLPDGQVKTDRLADIAAIQEALRVPDSHLIYVARPDDP  120

Query  171  ADMIPAVTAVGDPFTADHVSVTVPGVSGTTRQTIATMTQETRGLREEARVIAHSVGESEN  230
            ADMIPAVTAVGDPFTADHVSVTVPGVSGTTRQTIATMTQE RGLREEARVIAHSVGESEN
Sbjct  121  ADMIPAVTAVGDPFTADHVSVTVPGVSGTTRQTIATMTQEARGLREEARVIAHSVGESEN  180

Query  231  VATIAWVGYQPPPVLASWNTVDDDLAQAGAPKLEAFLRDLQAGSHNPGHTTALFGHSYGS  290
            VATIAWVGYQPPPVLASWNTVDDDLAQAGAPKLEAFLRDLQAGSHNPGHTTALFGHSYGS
Sbjct  181  VATIAWVGYQPPPVLASWNTVDDDLAQAGAPKLEAFLRDLQAGSHNPGHTTALFGHSYGS  240

Query  291  LLSGIALKDGASSLVDNAVLYGSPGFDATSPAKLGMNDHNFFVMTTPDDPIRYPARLAPL  350
            LLSGIALKDGASSLVDNAVLYGSPGFDATSPAKLGMNDHNFFVMTTPDDPIRYPARLAPL
Sbjct  241  LLSGIALKDGASSLVDNAVLYGSPGFDATSPAKLGMNDHNFFVMTTPDDPIRYPARLAPL  300

Query  351  HGWGSDGADTIGTVGRQGTPARVGIRPQRDHRRIPGPLPLHPSADRRGIHSAG  403
            HGWGSDGADTIGTVGRQGTPARVGIRPQRDHRRIPGPLPLHPSADRRGIHSAG
Sbjct  301  HGWGSDGADTIGTVGRQGTPARVGIRPQRDHRRIPGPLPLHPSADRRGIHSAG  353


>gi|340627558|ref|YP_004746010.1| hypothetical protein MCAN_25831 [Mycobacterium canettii CIPT 
140010059]
 gi|340005748|emb|CCC44914.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=361

 Score =  677 bits (1747),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 340/361 (95%), Positives = 348/361 (97%), Gaps = 0/361 (0%)

Query  1    VLDAVSDARRDGFAVGEDYTVTDRSTGGSRQQRAARLGQAQGHADFIRHRVGALLATDRD  60
            +LDAVSDARRDGFAVGEDYTVTDRSTGGSRQQRAARLGQAQGHADFIRHRVGALLATDR+
Sbjct  1    MLDAVSDARRDGFAVGEDYTVTDRSTGGSRQQRAARLGQAQGHADFIRHRVGALLATDRE  60

Query  61   IATRVSAATQGLDELAFEDVPGVDTPAEDGVQAVDFRQAPPPGAPGGMSSGDIDAIDAAN  120
            IATRVSAATQGLDELAFE+VPGVDTPAEDGVQAVDFRQAPPP APGGMSSGDIDAIDAAN
Sbjct  61   IATRVSAATQGLDELAFEEVPGVDTPAEDGVQAVDFRQAPPPAAPGGMSSGDIDAIDAAN  120

Query  121  RALLQDMLAEYSRLPDGQVKTDRLADIAAIQEALRVPDSHLIYVARPDDPADMIPAVTAV  180
            RALLQDMLAEYSRLPDGQVKTDRLADIA IQEALRVPDSHLIYVA+PDDPADMIPAVTAV
Sbjct  121  RALLQDMLAEYSRLPDGQVKTDRLADIAGIQEALRVPDSHLIYVAKPDDPADMIPAVTAV  180

Query  181  GDPFTADHVSVTVPGVSGTTRQTIATMTQETRGLREEARVIAHSVGESENVATIAWVGYQ  240
            GDPFTADHVSVTVPGVSGTTRQTIATMTQE   LR EA+ +A  VGES NVATIAWVGYQ
Sbjct  181  GDPFTADHVSVTVPGVSGTTRQTIATMTQEAGDLRREAQYVARKVGESTNVATIAWVGYQ  240

Query  241  PPPVLASWNTVDDDLAQAGAPKLEAFLRDLQAGSHNPGHTTALFGHSYGSLLSGIALKDG  300
            PPPVLASW+TVDDDLAQAGAPKLEAFLRDLQAGSHNPGHTTALFGHSYGSLLSGIALKDG
Sbjct  241  PPPVLASWDTVDDDLAQAGAPKLEAFLRDLQAGSHNPGHTTALFGHSYGSLLSGIALKDG  300

Query  301  ASSLVDNAVLYGSPGFDATSPAKLGMNDHNFFVMTTPDDPIRYPARLAPLHGWGSDGADT  360
            ASSLVDNAVLYGSPGFDATSPAKLGMNDHNFFVMTTPDDPIRYPARLAPLHGWGSD  + 
Sbjct  301  ASSLVDNAVLYGSPGFDATSPAKLGMNDHNFFVMTTPDDPIRYPARLAPLHGWGSDPNEI  360

Query  361  I  361
            I
Sbjct  361  I  361


>gi|15842076|ref|NP_337113.1| hypothetical protein MT2616 [Mycobacterium tuberculosis CDC1551]
 gi|13882357|gb|AAK46927.1| hypothetical protein MT2616 [Mycobacterium tuberculosis CDC1551]
Length=265

 Score =  531 bits (1367),  Expect = 1e-148, Method: Compositional matrix adjust.
 Identities = 263/265 (99%), Positives = 264/265 (99%), Gaps = 0/265 (0%)

Query  139  VKTDRLADIAAIQEALRVPDSHLIYVARPDDPADMIPAVTAVGDPFTADHVSVTVPGVSG  198
            +KTDRLADIAAIQEALRVPDSHLIYVARPDDPADMIPAVTAVGDPFTADHVSVTVPGVSG
Sbjct  1    MKTDRLADIAAIQEALRVPDSHLIYVARPDDPADMIPAVTAVGDPFTADHVSVTVPGVSG  60

Query  199  TTRQTIATMTQETRGLREEARVIAHSVGESENVATIAWVGYQPPPVLASWNTVDDDLAQA  258
            TTRQTIATMTQE RGLREEARVIAHSVGESENVATIAWVGYQPPPVLASWNTVDDDLAQA
Sbjct  61   TTRQTIATMTQEARGLREEARVIAHSVGESENVATIAWVGYQPPPVLASWNTVDDDLAQA  120

Query  259  GAPKLEAFLRDLQAGSHNPGHTTALFGHSYGSLLSGIALKDGASSLVDNAVLYGSPGFDA  318
            GAPKLEAFLRDLQAGSHNPGHTTALFGHSYGSLLSGIALKDGASSLVDNAVLYGSPGFDA
Sbjct  121  GAPKLEAFLRDLQAGSHNPGHTTALFGHSYGSLLSGIALKDGASSLVDNAVLYGSPGFDA  180

Query  319  TSPAKLGMNDHNFFVMTTPDDPIRYPARLAPLHGWGSDGADTIGTVGRQGTPARVGIRPQ  378
            TSPAKLGMNDHNFFVMTTPDDPIRYPARLAPLHGWGSDGADTIGTVGRQGTPARVGIRPQ
Sbjct  181  TSPAKLGMNDHNFFVMTTPDDPIRYPARLAPLHGWGSDGADTIGTVGRQGTPARVGIRPQ  240

Query  379  RDHRRIPGPLPLHPSADRRGIHSAG  403
            RDHRRIPGPLPLHPSADRRGIHSAG
Sbjct  241  RDHRRIPGPLPLHPSADRRGIHSAG  265


>gi|240171302|ref|ZP_04749961.1| hypothetical protein MkanA1_18466 [Mycobacterium kansasii ATCC 
12478]
Length=562

 Score =  169 bits (429),  Expect = 6e-40, Method: Compositional matrix adjust.
 Identities = 115/257 (45%), Positives = 154/257 (60%), Gaps = 19/257 (7%)

Query  115  AIDAANRALLQDMLAEYSRLPDGQVK--TDRLADIAAIQEALR-VPDSHLIYVARPDDPA  171
            A D  N  L  D L + + L DGQ+     RLAD+ A+ +ALR  P+++L  +  PDDP 
Sbjct  221  ARDYNNGILNSDALGQLAAL-DGQLSAAKGRLADLDAVDQALRNAPETYLAQLRIPDDPH  279

Query  172  DMIPAVTAVGDPFTADHVSVTVPGVSGTTRQTIATMTQETRGL-REEARVIAHSVGESEN  230
              + A  AVG+P TA +VSVTVPGV  TTR T+  M  E R L REE R + ++ G+  +
Sbjct  280  QQVLAAVAVGNPDTAANVSVTVPGVGSTTRGTLPGMVTEARNLQREEIRQL-NAAGKPAS  338

Query  231  VATIAWVGYQPPPVLAS-------WNTVDDDLAQAGAPKLEAFLRDLQAGSHNPGHTTAL  283
            VATIAW+GY PPP           W T+ D+ A+AGA  L  +L+ ++A + N GH T L
Sbjct  339  VATIAWMGYTPPPNPLDTGSAGDLWQTMTDEQARAGAADLSKYLQQVRANNPN-GHLTVL  397

Query  284  FGHSYGSLLSGIALKD---GASSLVDNAVLYGSPGFDATSPAKLGMNDHNFFVMTTPDDP  340
             GHSYGSL + +AL+D     S  V++ V YGSPG +  SPA+LG++    +VM  P D 
Sbjct  398  -GHSYGSLTASLALQDLNAHGSHPVNDVVFYGSPGLELYSPAQLGLDHGQAYVMQAPHDL  456

Query  341  IR-YPARLAPLHGWGSD  356
            I    A +APLHGWG D
Sbjct  457  ITDLVAPVAPLHGWGPD  473


>gi|183981926|ref|YP_001850217.1| hypothetical protein MMAR_1913 [Mycobacterium marinum M]
 gi|183175252|gb|ACC40362.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=562

 Score =  162 bits (410),  Expect = 1e-37, Method: Compositional matrix adjust.
 Identities = 110/257 (43%), Positives = 147/257 (58%), Gaps = 19/257 (7%)

Query  115  AIDAANRALLQDMLAEYSRLPDGQVKTD-RLADIAAIQEALR-VPDSHLIYVARPDDPAD  172
            A D  N  L  D + + + L D       RL D+ A+ +ALR  P+++L  +  PDDP  
Sbjct  221  ACDYNNGILDSDAMGQLAALGDQLTAAKGRLGDLDAVDQALRNAPETYLAQLRVPDDPHQ  280

Query  173  MIPAVTAVGDPFTADHVSVTVPGVSGTTRQTIATMTQETRGLREEARVIAHSVGESENVA  232
             + A  AVG+P TA +VSVTVPGV  TTR T+  M  E R L+ E      + G+  +VA
Sbjct  281  QVLAAVAVGNPDTAANVSVTVPGVGSTTRGTLPGMVTEARNLQSEEMRQLKNAGKPTSVA  340

Query  233  TIAWVGYQPPPVLAS-------WNTVDDDLAQAGAPKLEAFLRDLQAGSHNP-GHTTALF  284
             IAW+GY+PPP           W T+ D  A+AGA  L  +L+ ++A  +NP GH T L 
Sbjct  341  AIAWMGYEPPPNPLDTATAGDLWQTMTDGQARAGAGDLSRYLQQVRA--NNPSGHLTVL-  397

Query  285  GHSYGSLLSGIALKD----GASSLVDNAVLYGSPGFDATSPAKLGMNDHNFFVMTTPDDP  340
            GHSYGSL + +AL+D    GA   V++ V YGSPG +  SPA+LG+   + +VM  P D 
Sbjct  398  GHSYGSLTASLALQDLNAHGAHP-VNDVVFYGSPGLELYSPAQLGLEHGHAYVMQAPHDL  456

Query  341  IR-YPARLAPLHGWGSD  356
            I    A LAPLHGWG D
Sbjct  457  ITGVVAPLAPLHGWGPD  473


>gi|323718643|gb|EGB27807.1| hypothetical protein TMMG_02803 [Mycobacterium tuberculosis CDC1551A]
Length=558

 Score =  160 bits (406),  Expect = 3e-37, Method: Compositional matrix adjust.
 Identities = 101/227 (45%), Positives = 137/227 (61%), Gaps = 16/227 (7%)

Query  143  RLADIAAIQEAL-RVPDSHLIYVARPDDPADMIPAVTAVGDPFTADHVSVTVPGVSGTTR  201
            RL ++ A+ EAL R P+++L  +  P+DP   + A  AVG+P TA +VSVTVPGV  TTR
Sbjct  246  RLGELDAVDEALSRAPETYLTQLQIPEDPNQQVLAAVAVGNPDTAANVSVTVPGVGSTTR  305

Query  202  QTIATMTQETRGLREEARVIAHSVGESENVATIAWVGYQPPPVLAS-------WNTVDDD  254
              +  M  E R LR E     ++ G+  +VATIAW+GY PPP           W T+ D 
Sbjct  306  GALPGMVTEARDLRSEVIRQLNAAGKPASVATIAWMGYHPPPNPLDTGSAGDLWQTMTDG  365

Query  255  LAQAGAPKLEAFLRDLQAGSHNP-GHTTALFGHSYGSLLSGIALKD---GASSLVDNAVL  310
             A AGA  L  +L+ ++A  +NP GH T L GHSYGSL + +AL+D    ++  V++ V 
Sbjct  366  QAHAGAADLSRYLQQVRA--NNPSGHLTVL-GHSYGSLTASLALQDLDAQSAHPVNDVVF  422

Query  311  YGSPGFDATSPAKLGMNDHNFFVMTTPDDPI-RYPARLAPLHGWGSD  356
            YGSPG +  SPA+LG++  + +VM  P D I    A LAPLHGWG D
Sbjct  423  YGSPGLELYSPAQLGLDHGHAYVMQAPHDLITNLVAPLAPLHGWGLD  469


>gi|339295646|gb|AEJ47757.1| hypothetical protein CCDC5079_2567 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339299263|gb|AEJ51373.1| hypothetical protein CCDC5180_2536 [Mycobacterium tuberculosis 
CCDC5180]
Length=558

 Score =  160 bits (406),  Expect = 3e-37, Method: Compositional matrix adjust.
 Identities = 101/227 (45%), Positives = 137/227 (61%), Gaps = 16/227 (7%)

Query  143  RLADIAAIQEAL-RVPDSHLIYVARPDDPADMIPAVTAVGDPFTADHVSVTVPGVSGTTR  201
            RL ++ A+ EAL R P+++L  +  P+DP   + A  AVG+P TA +VSVTVPGV  TTR
Sbjct  246  RLGELDAVDEALSRAPETYLTQLQIPEDPNQQVLAAVAVGNPDTAANVSVTVPGVGSTTR  305

Query  202  QTIATMTQETRGLREEARVIAHSVGESENVATIAWVGYQPPPVLAS-------WNTVDDD  254
              +  M  E R LR E     ++ G+  +VATIAW+GY PPP           W T+ D 
Sbjct  306  GALPGMVTEARDLRSEVIRQLNAAGKPASVATIAWMGYHPPPNPLDTGSAGDLWQTMTDG  365

Query  255  LAQAGAPKLEAFLRDLQAGSHNP-GHTTALFGHSYGSLLSGIALKD---GASSLVDNAVL  310
             A AGA  L  +L+ ++A  +NP GH T L GHSYGSL + +AL+D    ++  V++ V 
Sbjct  366  QAHAGAADLSRYLQQVRA--NNPSGHLTVL-GHSYGSLTASLALQDLDAQSAHPVNDVVF  422

Query  311  YGSPGFDATSPAKLGMNDHNFFVMTTPDDPI-RYPARLAPLHGWGSD  356
            YGSPG +  SPA+LG++  + +VM  P D I    A LAPLHGWG D
Sbjct  423  YGSPGLELYSPAQLGLDHGHAYVMQAPHDLITNLVAPLAPLHGWGLD  469


>gi|307085494|ref|ZP_07494607.1| hypothetical protein TMLG_02511 [Mycobacterium tuberculosis SUMu012]
 gi|308365018|gb|EFP53869.1| hypothetical protein TMLG_02511 [Mycobacterium tuberculosis SUMu012]
Length=523

 Score =  160 bits (406),  Expect = 3e-37, Method: Compositional matrix adjust.
 Identities = 101/227 (45%), Positives = 137/227 (61%), Gaps = 16/227 (7%)

Query  143  RLADIAAIQEAL-RVPDSHLIYVARPDDPADMIPAVTAVGDPFTADHVSVTVPGVSGTTR  201
            RL ++ A+ EAL R P+++L  +  P+DP   + A  AVG+P TA +VSVTVPGV  TTR
Sbjct  250  RLGELDAVDEALSRAPETYLTQLQIPEDPNQQVLAAVAVGNPDTAANVSVTVPGVGSTTR  309

Query  202  QTIATMTQETRGLREEARVIAHSVGESENVATIAWVGYQPPPVLAS-------WNTVDDD  254
              +  M  E R LR E     ++ G+  +VATIAW+GY PPP           W T+ D 
Sbjct  310  GALPGMVTEARDLRSEVIRQLNAAGKPASVATIAWMGYHPPPNPLDTGSAGDLWQTMTDG  369

Query  255  LAQAGAPKLEAFLRDLQAGSHNP-GHTTALFGHSYGSLLSGIALKD---GASSLVDNAVL  310
             A AGA  L  +L+ ++A  +NP GH T L GHSYGSL + +AL+D    ++  V++ V 
Sbjct  370  QAHAGAADLSRYLQQVRA--NNPSGHLTVL-GHSYGSLTASLALQDLDAQSAHPVNDVVF  426

Query  311  YGSPGFDATSPAKLGMNDHNFFVMTTPDDPI-RYPARLAPLHGWGSD  356
            YGSPG +  SPA+LG++  + +VM  P D I    A LAPLHGWG D
Sbjct  427  YGSPGLELYSPAQLGLDHGHAYVMQAPHDLITNLVAPLAPLHGWGLD  473


>gi|289575495|ref|ZP_06455722.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289539926|gb|EFD44504.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
Length=562

 Score =  160 bits (406),  Expect = 3e-37, Method: Compositional matrix adjust.
 Identities = 101/227 (45%), Positives = 137/227 (61%), Gaps = 16/227 (7%)

Query  143  RLADIAAIQEAL-RVPDSHLIYVARPDDPADMIPAVTAVGDPFTADHVSVTVPGVSGTTR  201
            RL ++ A+ EAL R P+++L  +  P+DP   + A  AVG+P TA +VSVTVPGV  TTR
Sbjct  250  RLGELDAVDEALSRAPETYLTQLQIPEDPNQQVLAAVAVGNPDTAANVSVTVPGVGSTTR  309

Query  202  QTIATMTQETRGLREEARVIAHSVGESENVATIAWVGYQPPPVLAS-------WNTVDDD  254
              +  M  E R LR E     ++ G+  +VATIAW+GY PPP           W T+ D 
Sbjct  310  GALPGMVTEARDLRSEVIRQLNAAGKPASVATIAWMGYHPPPNPLDTGSAGDLWQTMTDG  369

Query  255  LAQAGAPKLEAFLRDLQAGSHNP-GHTTALFGHSYGSLLSGIALKD---GASSLVDNAVL  310
             A AGA  L  +L+ ++A  +NP GH T L GHSYGSL + +AL+D    ++  V++ V 
Sbjct  370  QAHAGAADLSRYLQQVRA--NNPSGHLTVL-GHSYGSLTASLALQDLDAQSAHPVNDVVF  426

Query  311  YGSPGFDATSPAKLGMNDHNFFVMTTPDDPI-RYPARLAPLHGWGSD  356
            YGSPG +  SPA+LG++  + +VM  P D I    A LAPLHGWG D
Sbjct  427  YGSPGLELYSPAQLGLDHGHAYVMQAPHDLITNLVAPLAPLHGWGLD  473


>gi|306785609|ref|ZP_07423931.1| hypothetical protein TMCG_02042 [Mycobacterium tuberculosis SUMu003]
 gi|308329719|gb|EFP18570.1| hypothetical protein TMCG_02042 [Mycobacterium tuberculosis SUMu003]
Length=508

 Score =  160 bits (405),  Expect = 3e-37, Method: Compositional matrix adjust.
 Identities = 101/227 (45%), Positives = 137/227 (61%), Gaps = 16/227 (7%)

Query  143  RLADIAAIQEAL-RVPDSHLIYVARPDDPADMIPAVTAVGDPFTADHVSVTVPGVSGTTR  201
            RL ++ A+ EAL R P+++L  +  P+DP   + A  AVG+P TA +VSVTVPGV  TTR
Sbjct  250  RLGELDAVDEALSRAPETYLTQLQIPEDPNQQVLAAVAVGNPDTAANVSVTVPGVGSTTR  309

Query  202  QTIATMTQETRGLREEARVIAHSVGESENVATIAWVGYQPPPVLAS-------WNTVDDD  254
              +  M  E R LR E     ++ G+  +VATIAW+GY PPP           W T+ D 
Sbjct  310  GALPGMVTEARDLRSEVIRQLNAAGKPASVATIAWMGYHPPPNPLDTGSAGDLWQTMTDG  369

Query  255  LAQAGAPKLEAFLRDLQAGSHNP-GHTTALFGHSYGSLLSGIALKD---GASSLVDNAVL  310
             A AGA  L  +L+ ++A  +NP GH T L GHSYGSL + +AL+D    ++  V++ V 
Sbjct  370  QAHAGAADLSRYLQQVRA--NNPSGHLTVL-GHSYGSLTASLALQDLDAQSAHPVNDVVF  426

Query  311  YGSPGFDATSPAKLGMNDHNFFVMTTPDDPI-RYPARLAPLHGWGSD  356
            YGSPG +  SPA+LG++  + +VM  P D I    A LAPLHGWG D
Sbjct  427  YGSPGLELYSPAQLGLDHGHAYVMQAPHDLITNLVAPLAPLHGWGLD  473


>gi|289758923|ref|ZP_06518301.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289714487|gb|EFD78499.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
Length=526

 Score =  160 bits (405),  Expect = 3e-37, Method: Compositional matrix adjust.
 Identities = 101/227 (45%), Positives = 137/227 (61%), Gaps = 16/227 (7%)

Query  143  RLADIAAIQEAL-RVPDSHLIYVARPDDPADMIPAVTAVGDPFTADHVSVTVPGVSGTTR  201
            RL ++ A+ EAL R P+++L  +  P+DP   + A  AVG+P TA +VSVTVPGV  TTR
Sbjct  214  RLGELDAVDEALSRAPETYLTQLQIPEDPNQQVLAAVAVGNPDTAANVSVTVPGVGSTTR  273

Query  202  QTIATMTQETRGLREEARVIAHSVGESENVATIAWVGYQPPPVLAS-------WNTVDDD  254
              +  M  E R LR E     ++ G+  +VATIAW+GY PPP           W T+ D 
Sbjct  274  GALPGMVTEARDLRSEVIRQLNAAGKPASVATIAWMGYHPPPNPLDTGSAGDLWQTMTDG  333

Query  255  LAQAGAPKLEAFLRDLQAGSHNP-GHTTALFGHSYGSLLSGIALKD---GASSLVDNAVL  310
             A AGA  L  +L+ ++A  +NP GH T L GHSYGSL + +AL+D    ++  V++ V 
Sbjct  334  QAHAGAADLSRYLQQVRA--NNPSGHLTVL-GHSYGSLTASLALQDLDAQSAHPVNDVVF  390

Query  311  YGSPGFDATSPAKLGMNDHNFFVMTTPDDPI-RYPARLAPLHGWGSD  356
            YGSPG +  SPA+LG++  + +VM  P D I    A LAPLHGWG D
Sbjct  391  YGSPGLELYSPAQLGLDHGHAYVMQAPHDLITNLVAPLAPLHGWGLD  437


>gi|15842335|ref|NP_337372.1| hypothetical protein MT2866 [Mycobacterium tuberculosis CDC1551]
 gi|13882631|gb|AAK47186.1| hypothetical protein MT2866 [Mycobacterium tuberculosis CDC1551]
Length=562

 Score =  160 bits (405),  Expect = 3e-37, Method: Compositional matrix adjust.
 Identities = 101/227 (45%), Positives = 137/227 (61%), Gaps = 16/227 (7%)

Query  143  RLADIAAIQEAL-RVPDSHLIYVARPDDPADMIPAVTAVGDPFTADHVSVTVPGVSGTTR  201
            RL ++ A+ EAL R P+++L  +  P+DP   + A  AVG+P TA +VSVTVPGV  TTR
Sbjct  250  RLGELDAVDEALSRAPETYLTQLQIPEDPNQQVLAAVAVGNPDTAANVSVTVPGVGSTTR  309

Query  202  QTIATMTQETRGLREEARVIAHSVGESENVATIAWVGYQPPPVLAS-------WNTVDDD  254
              +  M  E R LR E     ++ G+  +VATIAW+GY PPP           W T+ D 
Sbjct  310  GALPGMVTEARDLRSEVIRQLNAAGKPASVATIAWMGYHPPPNPLDTGSAGDLWQTMTDG  369

Query  255  LAQAGAPKLEAFLRDLQAGSHNP-GHTTALFGHSYGSLLSGIALKD---GASSLVDNAVL  310
             A AGA  L  +L+ ++A  +NP GH T L GHSYGSL + +AL+D    ++  V++ V 
Sbjct  370  QAHAGAADLSRYLQQVRA--NNPSGHLTVL-GHSYGSLTASLALQDLDAQSAHPVNDVVF  426

Query  311  YGSPGFDATSPAKLGMNDHNFFVMTTPDDPI-RYPARLAPLHGWGSD  356
            YGSPG +  SPA+LG++  + +VM  P D I    A LAPLHGWG D
Sbjct  427  YGSPGLELYSPAQLGLDHGHAYVMQAPHDLITNLVAPLAPLHGWGLD  473


>gi|15609934|ref|NP_217313.1| hypothetical protein Rv2797c [Mycobacterium tuberculosis H37Rv]
 gi|31793973|ref|NP_856466.1| hypothetical protein Mb2820c [Mycobacterium bovis AF2122/97]
 gi|121638677|ref|YP_978901.1| hypothetical protein BCG_2815c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 56 more sequence titles
 
gi|148662639|ref|YP_001284162.1| hypothetical protein MRA_2821 [Mycobacterium tuberculosis H37Ra]
 gi|148823985|ref|YP_001288739.1| hypothetical protein TBFG_12810 [Mycobacterium tuberculosis F11]
 gi|167967633|ref|ZP_02549910.1| hypothetical protein MtubH3_06191 [Mycobacterium tuberculosis 
H37Ra]
 gi|224991169|ref|YP_002645858.1| hypothetical protein JTY_2809 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253798119|ref|YP_003031120.1| hypothetical protein TBMG_01177 [Mycobacterium tuberculosis KZN 
1435]
 gi|254365448|ref|ZP_04981493.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|289553416|ref|ZP_06442626.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|289570976|ref|ZP_06451203.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289746600|ref|ZP_06505978.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289754903|ref|ZP_06514281.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289762971|ref|ZP_06522349.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|294994109|ref|ZP_06799800.1| hypothetical protein Mtub2_06243 [Mycobacterium tuberculosis 
210]
 gi|297635408|ref|ZP_06953188.1| hypothetical protein MtubK4_14862 [Mycobacterium tuberculosis 
KZN 4207]
 gi|297732406|ref|ZP_06961524.1| hypothetical protein MtubKR_15017 [Mycobacterium tuberculosis 
KZN R506]
 gi|298526263|ref|ZP_07013672.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|306777078|ref|ZP_07415415.1| hypothetical protein TMAG_03179 [Mycobacterium tuberculosis SUMu001]
 gi|306780980|ref|ZP_07419317.1| hypothetical protein TMBG_02931 [Mycobacterium tuberculosis SUMu002]
 gi|306790203|ref|ZP_07428525.1| hypothetical protein TMDG_00507 [Mycobacterium tuberculosis SUMu004]
 gi|306794287|ref|ZP_07432589.1| hypothetical protein TMEG_03471 [Mycobacterium tuberculosis SUMu005]
 gi|306798705|ref|ZP_07437007.1| hypothetical protein TMFG_03692 [Mycobacterium tuberculosis SUMu006]
 gi|306804560|ref|ZP_07441228.1| hypothetical protein TMHG_01995 [Mycobacterium tuberculosis SUMu008]
 gi|306807400|ref|ZP_07444068.1| hypothetical protein TMGG_02074 [Mycobacterium tuberculosis SUMu007]
 gi|306968859|ref|ZP_07481520.1| hypothetical protein TMIG_02295 [Mycobacterium tuberculosis SUMu009]
 gi|306973193|ref|ZP_07485854.1| hypothetical protein TMJG_01781 [Mycobacterium tuberculosis SUMu010]
 gi|307080902|ref|ZP_07490072.1| hypothetical protein TMKG_03225 [Mycobacterium tuberculosis SUMu011]
 gi|313659738|ref|ZP_07816618.1| hypothetical protein MtubKV_15017 [Mycobacterium tuberculosis 
KZN V2475]
 gi|339632808|ref|YP_004724450.1| hypothetical protein MAF_28020 [Mycobacterium africanum GM041182]
 gi|1648924|emb|CAB03649.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|31619567|emb|CAD95005.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121494325|emb|CAL72803.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|134150961|gb|EBA43006.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|148506791|gb|ABQ74600.1| hypothetical protein MRA_2821 [Mycobacterium tuberculosis H37Ra]
 gi|148722512|gb|ABR07137.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|224774284|dbj|BAH27090.1| hypothetical protein JTY_2809 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253319622|gb|ACT24225.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
1435]
 gi|289438048|gb|EFD20541.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|289544730|gb|EFD48378.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289687128|gb|EFD54616.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289695490|gb|EFD62919.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289710477|gb|EFD74493.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|298496057|gb|EFI31351.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308214587|gb|EFO73986.1| hypothetical protein TMAG_03179 [Mycobacterium tuberculosis SUMu001]
 gi|308326233|gb|EFP15084.1| hypothetical protein TMBG_02931 [Mycobacterium tuberculosis SUMu002]
 gi|308333396|gb|EFP22247.1| hypothetical protein TMDG_00507 [Mycobacterium tuberculosis SUMu004]
 gi|308337420|gb|EFP26271.1| hypothetical protein TMEG_03471 [Mycobacterium tuberculosis SUMu005]
 gi|308341085|gb|EFP29936.1| hypothetical protein TMFG_03692 [Mycobacterium tuberculosis SUMu006]
 gi|308346131|gb|EFP34982.1| hypothetical protein TMGG_02074 [Mycobacterium tuberculosis SUMu007]
 gi|308348890|gb|EFP37741.1| hypothetical protein TMHG_01995 [Mycobacterium tuberculosis SUMu008]
 gi|308353610|gb|EFP42461.1| hypothetical protein TMIG_02295 [Mycobacterium tuberculosis SUMu009]
 gi|308357456|gb|EFP46307.1| hypothetical protein TMJG_01781 [Mycobacterium tuberculosis SUMu010]
 gi|308361405|gb|EFP50256.1| hypothetical protein TMKG_03225 [Mycobacterium tuberculosis SUMu011]
 gi|326904412|gb|EGE51345.1| hypothetical protein TBPG_02313 [Mycobacterium tuberculosis W-148]
 gi|328457892|gb|AEB03315.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
4207]
 gi|339332164|emb|CCC27872.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
 gi|341602715|emb|CCC65391.1| conserved hypothetical protein [Mycobacterium bovis BCG str. 
Moreau RDJ]
 gi|344220625|gb|AEN01256.1| hypothetical protein MTCTRI2_2850 [Mycobacterium tuberculosis 
CTRI-2]
Length=562

 Score =  160 bits (405),  Expect = 3e-37, Method: Compositional matrix adjust.
 Identities = 101/227 (45%), Positives = 137/227 (61%), Gaps = 16/227 (7%)

Query  143  RLADIAAIQEAL-RVPDSHLIYVARPDDPADMIPAVTAVGDPFTADHVSVTVPGVSGTTR  201
            RL ++ A+ EAL R P+++L  +  P+DP   + A  AVG+P TA +VSVTVPGV  TTR
Sbjct  250  RLGELDAVDEALSRAPETYLTQLQIPEDPNQQVLAAVAVGNPDTAANVSVTVPGVGSTTR  309

Query  202  QTIATMTQETRGLREEARVIAHSVGESENVATIAWVGYQPPPVLAS-------WNTVDDD  254
              +  M  E R LR E     ++ G+  +VATIAW+GY PPP           W T+ D 
Sbjct  310  GALPGMVTEARDLRSEVIRQLNAAGKPASVATIAWMGYHPPPNPLDTGSAGDLWQTMTDG  369

Query  255  LAQAGAPKLEAFLRDLQAGSHNP-GHTTALFGHSYGSLLSGIALKD---GASSLVDNAVL  310
             A AGA  L  +L+ ++A  +NP GH T L GHSYGSL + +AL+D    ++  V++ V 
Sbjct  370  QAHAGAADLSRYLQQVRA--NNPSGHLTVL-GHSYGSLTASLALQDLDAQSAHPVNDVVF  426

Query  311  YGSPGFDATSPAKLGMNDHNFFVMTTPDDPI-RYPARLAPLHGWGSD  356
            YGSPG +  SPA+LG++  + +VM  P D I    A LAPLHGWG D
Sbjct  427  YGSPGLELYSPAQLGLDHGHAYVMQAPHDLITNLVAPLAPLHGWGLD  473


>gi|289444345|ref|ZP_06434089.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289417264|gb|EFD14504.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
Length=476

 Score =  144 bits (364),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 90/210 (43%), Positives = 126/210 (60%), Gaps = 15/210 (7%)

Query  143  RLADIAAIQEAL-RVPDSHLIYVARPDDPADMIPAVTAVGDPFTADHVSVTVPGVSGTTR  201
            RL ++ A+ EAL R P+++L  +  P+DP   + A  AVG+P TA +VSVTVPGV  TTR
Sbjct  250  RLGELDAVDEALSRAPETYLTQLQIPEDPNQQVLAAVAVGNPDTAANVSVTVPGVGSTTR  309

Query  202  QTIATMTQETRGLREEARVIAHSVGESENVATIAWVGYQPPPVLAS-------WNTVDDD  254
              +  M  E R LR E     ++ G+  +VATIAW+GY PPP           W T+ D 
Sbjct  310  GALPGMVTEARDLRSEVIRQLNAAGKPASVATIAWMGYHPPPNPLDTGSAGDLWQTMTDG  369

Query  255  LAQAGAPKLEAFLRDLQAGSHNP-GHTTALFGHSYGSLLSGIALKD---GASSLVDNAVL  310
             A AGA  L  +L+ ++A  +NP GH T L GHSYGSL + +AL+D    ++  V++ V 
Sbjct  370  QAHAGAADLSRYLQQVRA--NNPSGHLTVL-GHSYGSLTASLALQDLDAQSAHPVNDVVF  426

Query  311  YGSPGFDATSPAKLGMNDHNFFVMTTPDDP  340
            YGSPG +  SPA+LG++  + +VM  P  P
Sbjct  427  YGSPGLELYSPAQLGLDHGHAYVMQAPPRP  456


>gi|289448455|ref|ZP_06438199.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289421413|gb|EFD18614.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length=281

 Score =  138 bits (347),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 89/193 (47%), Positives = 116/193 (61%), Gaps = 15/193 (7%)

Query  176  AVTAVGDPFTADHVSVTVPGVSGTTRQTIATMTQETRGLREEARVIAHSVGESENVATIA  235
            A  AVG+P TA +VSVTVPGV  TTR  +  M  E R LR E     ++ G+  +VATIA
Sbjct  3    AAVAVGNPDTAANVSVTVPGVGSTTRGALPGMVTEARDLRSEVIRQLNAAGKPASVATIA  62

Query  236  WVGYQPPPVLAS-------WNTVDDDLAQAGAPKLEAFLRDLQAGSHNP-GHTTALFGHS  287
            W+GY PPP           W T+ D  A AGA  L  +L+ ++A  +NP GH T L GHS
Sbjct  63   WMGYHPPPNPLDTGSAGDLWQTMTDGQAHAGAADLSRYLQQVRA--NNPSGHLTVL-GHS  119

Query  288  YGSLLSGIALKD---GASSLVDNAVLYGSPGFDATSPAKLGMNDHNFFVMTTPDDPI-RY  343
            YGSL + +AL+D    ++  V++ V YGSPG +  SPA+LG++  + +VM  P D I   
Sbjct  120  YGSLTASLALQDLDAQSAHPVNDVVFYGSPGLELYSPAQLGLDHGHAYVMQAPHDLITNL  179

Query  344  PARLAPLHGWGSD  356
             A LAPLHGWG D
Sbjct  180  VAPLAPLHGWGLD  192


>gi|342858918|ref|ZP_08715572.1| hypothetical protein MCOL_08578 [Mycobacterium colombiense CECT 
3035]
 gi|342133159|gb|EGT86362.1| hypothetical protein MCOL_08578 [Mycobacterium colombiense CECT 
3035]
Length=646

 Score =  131 bits (329),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 95/261 (37%), Positives = 136/261 (53%), Gaps = 29/261 (11%)

Query  97   RQAPPPGAPGGMSSGDIDAIDAANRALLQDMLAEYSRLPDGQVKTDRLADIAAIQEALRV  156
            +  PPP  PG +   D  A +A  R        +Y    +G      L D+ A+ +A+R+
Sbjct  293  KNIPPPNEPGAIFD-DRLAYEAWQR--------QYDAARNG---AKYLPDLQAVDKAVRM  340

Query  157  -PDSHLIYVARPDDPADMIPAVTAVGDPFTADHVSVTVPGVSGTTRQTIATMTQETRGLR  215
             PD  L+ +           A  AVGDP  + HVSVTVPG++ T    I +M+ E   LR
Sbjct  341  SPDRKLMLLDT--KTGRQARAAIAVGDPDASTHVSVTVPGLNTTVHGAIGSMSDEATRLR  398

Query  216  EEA-RVIAHSVG-ESENVATIAWVGYQPPPV----------LASWNTVDDDLAQAGAPKL  263
             EA R ++ + G E + V+ IAW+GY PP V             W    DD+A+AGA  L
Sbjct  399  SEALRQLSLAPGHEHDTVSAIAWIGYDPPQVPGFDDLGKSLAGGWGVSHDDIARAGAHDL  458

Query  264  EAFLRDLQAGSHN-PGHTTALFGHSYGSLLSGIALKDGASSLVDNAVLYGSPGFDATSPA  322
              F   +QA  H  P   TA+ GHSYGSL +G+AL++     +  A+ YGSPG +A++P 
Sbjct  459  AGFYDGIQAAHHGGPADLTAI-GHSYGSLTTGLALQEPGDHGISRALFYGSPGIEASTPQ  517

Query  323  KLGMNDHNFFVMTTPDDPIRY  343
            +L +   + F M TPDDPI++
Sbjct  518  QLHLQPGHVFTMETPDDPIQW  538


>gi|254775904|ref|ZP_05217420.1| hypothetical protein MaviaA2_14710 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=633

 Score =  129 bits (324),  Expect = 9e-28, Method: Compositional matrix adjust.
 Identities = 91/262 (35%), Positives = 135/262 (52%), Gaps = 29/262 (11%)

Query  95   DFRQAPPPGAPGGMSSGDIDAIDAANRALLQDMLAEYSRLPDGQVKTDRLADIAAIQEAL  154
            D +  PPP  PG +          A+R   +   ++Y    DG   +  L D+ A+ +A+
Sbjct  291  DGKNIPPPNEPGAI---------FADRQAYESWKSQYDAARDG---SKYLPDLQAVDKAV  338

Query  155  RV-PDSHLIYVARPDDPADMIPAVTAVGDPFTADHVSVTVPGVSGTTRQTIATMTQETRG  213
            ++ PD  L+ +           A  AVGDP T+ HVSVT PG++ T    I +M  E   
Sbjct  339  KMSPDRKLMLLDT--KTGKQARAAIAVGDPDTSTHVSVTAPGLNTTVHGAIGSMADEATR  396

Query  214  LREEA-RVIAHSVGESENVAT-IAWVGYQPPPV----------LASWNTVDDDLAQAGAP  261
            +R EA R ++ + G   + A+ IAW+GY PP V             W+   D +A+AGA 
Sbjct  397  VRSEALRQLSLTPGHEHDTASAIAWIGYDPPQVPGFDDIGKSLTGGWDVTHDAVARAGAH  456

Query  262  KLEAFLRDLQAGSHN-PGHTTALFGHSYGSLLSGIALKDGASSLVDNAVLYGSPGFDATS  320
             L  F   +QA  H  P   TA+ GHSYGSL +G+AL++     V  A+ YGSPG +A++
Sbjct  457  DLARFYDGIQAAHHGGPADLTAI-GHSYGSLTTGLALQEPGDHGVSRALFYGSPGIEAST  515

Query  321  PAKLGMNDHNFFVMTTPDDPIR  342
            P +L +   + + M TPDDPI+
Sbjct  516  PQQLHLQPGHVYAMETPDDPIQ  537


>gi|229494524|ref|ZP_04388287.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
 gi|229318886|gb|EEN84744.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=473

 Score =  125 bits (315),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 86/217 (40%), Positives = 114/217 (53%), Gaps = 15/217 (6%)

Query  137  GQVKTDR-LADIAAIQEALRV-PDSHLIYVARPDDPADMIPAVTAVGDPFTADHVSVTVP  194
            GQ   +R L D+ A+ E  R  PD  L+ +           A  AVGDP TADH+SVT+P
Sbjct  190  GQWYAERKLEDLDALDELFRAEPDRRLLLMDMRSGERGF--AAIAVGDPDTADHISVTIP  247

Query  195  GVSGTTRQTIATMTQETRGLREEARVIAHSVGESENVATIAWVGYQPPPVL---------  245
            G++     ++  M  E   LR EA       G  E+VATIAW+GY  P V+         
Sbjct  248  GLNTNVEDSMRGMVGEATRLRAEAMRQLELAGRKESVATIAWIGYDAPQVIGPGKFDIGR  307

Query  246  ASWNTVDDDLAQAGAPKLEAFLRDLQAGSHNPG-HTTALFGHSYGSLLSGIALKDGASSL  304
            AS++      A   A  L +F   L++ S N G H TAL GHSYGSL + +AL+ GAS+ 
Sbjct  308  ASFDVSRSSKAGIAADALGSFFHGLRSASVNDGVHITAL-GHSYGSLATSLALQRGASAA  366

Query  305  VDNAVLYGSPGFDATSPAKLGMNDHNFFVMTTPDDPI  341
            VD+ V YGSPG  A   + LG+ D + +VM    D I
Sbjct  367  VDDVVFYGSPGVRAKVESDLGIADRHVYVMKAEGDSI  403


>gi|333988787|ref|YP_004521401.1| hypothetical protein JDM601_0147 [Mycobacterium sp. JDM601]
 gi|333484755|gb|AEF34147.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=635

 Score =  125 bits (314),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 99/259 (39%), Positives = 131/259 (51%), Gaps = 31/259 (11%)

Query  100  PPPGAPGGMSSGDIDAIDAANRALLQDMLAEYSRLPDGQVKTDRLADIAAIQEALRV-PD  158
            P P  PG +          A+R   ++    Y    DG      L D+ A+  AL+V PD
Sbjct  300  PRPNEPGAIF---------ADRVAYENWQRRYDAARDG---AKYLPDLQAVDAALQVSPD  347

Query  159  SHLIYVARPDDPADMIPAVTAVGDPFTADHVSVTVPGVSGTTRQTIATMTQETRGLREEA  218
              L+ +    +      A  AVGDP  A HVSVT PG++ T    I  MT E   +R EA
Sbjct  348  RKLMLLDT--ESGTQARAAIAVGDPDKATHVSVTAPGLNTTVHGAIGGMTDEATHVRGEA  405

Query  219  -RVIAHSVG-ESENVATIAWVGYQPPPV---------LAS-WNTVDDDLAQAGAPKLEAF  266
             R +  S G E ++V+ IAW+GY PP V         LA  W    DDLA+AGA  L  F
Sbjct  406  LRQLGLSPGHEHDSVSAIAWIGYDPPQVPGFDDRGASLAGIWGVTHDDLARAGAHDLARF  465

Query  267  LRDLQAGSH--NPGHTTALFGHSYGSLLSGIALKDGASSLVDNAVLYGSPGFDATSPAKL  324
               +QA SH   P   TA+ GHSYGSL +G+AL++     V  A+ YGSPG +A +P +L
Sbjct  466  YDGIQA-SHLGGPADLTAI-GHSYGSLTTGLALQEPGDHGVSRALFYGSPGIEAATPEQL  523

Query  325  GMNDHNFFVMTTPDDPIRY  343
             +     F M  PDDPI++
Sbjct  524  HLQPGQVFAMEAPDDPIQW  542


>gi|111019228|ref|YP_702200.1| hypothetical protein RHA1_ro02235 [Rhodococcus jostii RHA1]
 gi|110818758|gb|ABG94042.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=555

 Score =  124 bits (310),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 90/223 (41%), Positives = 117/223 (53%), Gaps = 31/223 (13%)

Query  143  RLADIAAIQEALR-VPDSHLIYVARPDDPADMIPAVTAVGDPFTADHVSVTVPGVSGTTR  201
            +L D+  +++ +R  PD  L+ +       D   A  A+GDP TADH++VT PG+  TT 
Sbjct  268  KLRDLDDLEKLVRDHPDGRLMLLDL--QSGDRTMAAFALGDPDTADHIAVTTPGID-TTA  324

Query  202  QTIATMTQETRGLREEARVIAHSVGE-SENVATIAWVGYQPPP-----------------  243
             ++  MT+E   LR E        G  S+ V+TIAW+GYQPP                  
Sbjct  325  ASLRGMTEEAAALRAETERQLDLAGRTSDTVSTIAWLGYQPPTTTGPGNYDVPFIDQNLG  384

Query  244  ---VLASWNTVDDDLAQAGAPKLEAFLRDLQAGSHNPG-HTTALFGHSYGSLLSGIALKD  299
               +L SW +   D A AGAPKL +F   L   S  P  H TAL GHSYGS   G+AL+ 
Sbjct  385  RGWLLDSWQS---DRATAGAPKLASFYEGLDVASQTPDPHITAL-GHSYGSYTQGLALQH  440

Query  300  -GASSLVDNAVLYGSPGFDATSPAKLGMNDHNFFVMTTPDDPI  341
             G    VD+AV YGSPGFDA   + LG+   + FVM   DDPI
Sbjct  441  AGPRQPVDDAVFYGSPGFDANDESDLGLAPRHGFVMRAHDDPI  483


>gi|296169825|ref|ZP_06851439.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295895502|gb|EFG75202.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=646

 Score =  123 bits (308),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 82/214 (39%), Positives = 114/214 (54%), Gaps = 17/214 (7%)

Query  144  LADIAAIQEALRV-PDSHLIYVARPDDPADMIPAVTAVGDPFTADHVSVTVPGVSGTTRQ  202
            L D+ A+ + ++  PD  L+ +           A  AVGDP TA HVSVT PG++ T   
Sbjct  328  LPDLQAVDKTVKASPDRKLMLLDT--KTGKQARAAIAVGDPDTATHVSVTTPGLNTTVHG  385

Query  203  TIATMTQETRGLREEA-RVIAHSVG-ESENVATIAWVGYQPPPV----------LASWNT  250
             I  M  E    R EA R +  + G E + V+ IAW+GY PP V             W+ 
Sbjct  386  AIGGMVSEATNARTEALRQLGLTPGHEHDTVSAIAWIGYDPPQVPGFDDIGKSLTGGWDV  445

Query  251  VDDDLAQAGAPKLEAFLRDLQAGSHN-PGHTTALFGHSYGSLLSGIALKDGASSLVDNAV  309
              D +A+AGA  L  F   +QA  H  P   TA+ GHSYGSL +G+AL++     V  A+
Sbjct  446  SHDAVARAGAHDLAGFYDGIQAAHHGGPADLTAI-GHSYGSLTTGLALQEPGDHGVSRAL  504

Query  310  LYGSPGFDATSPAKLGMNDHNFFVMTTPDDPIRY  343
             YGSPG +A++P +L +   + F M TPDDPI++
Sbjct  505  FYGSPGIEASTPQQLHLQPGHVFTMETPDDPIQW  538


>gi|296393635|ref|YP_003658519.1| hypothetical protein Srot_1217 [Segniliparus rotundus DSM 44985]
 gi|296180782|gb|ADG97688.1| protein of unknown function DUF1023 [Segniliparus rotundus DSM 
44985]
Length=532

 Score =  121 bits (304),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 88/250 (36%), Positives = 121/250 (49%), Gaps = 32/250 (12%)

Query  143  RLADIAAIQEALRVPDSHLIYVARPDDPADMIPAVTAVGDPFTADHVSVTVPGVSGTTRQ  202
            RL    A++ ALR      + V  PD   +   A  A G+P TADH+SVT PGV+ +  Q
Sbjct  216  RLEGAKAVERALRDNKGTKLMVFDPD-YGERGRAAIATGEPDTADHISVTTPGVNSSPGQ  274

Query  203  TIATMTQETRGLREEARVIAHSVGE-SENVATIAWVGYQPPPVLASWNTVD---------  252
            +I  MT+E   L+ E   + +S G  +E V+TIAW+GY+PP      + +D         
Sbjct  275  SIVDMTKEAEALKRETETVLNSNGHGNETVSTIAWIGYEPPQAQLDPHHLDKTGDVGPGG  334

Query  253  -------------DDLAQAGAPKLEAFLRDLQAGSHNPG-------HTTALFGHSYGSLL  292
                         D  A+AGA  L +F   L A  H          H TAL GHSYGSL 
Sbjct  335  LGDEPGGLSDVSSDAKAKAGASSLSSFYEGLNAAWHPESGDAQTSPHITAL-GHSYGSLT  393

Query  293  SGIALKDGASSLVDNAVLYGSPGFDATSPAKLGMNDHNFFVMTTPDDPIRYPARLAPLHG  352
            + +AL+     +VDNAV YGSPG +  S  +L +   + F M   +DPI Y   +     
Sbjct  394  TSLALQQTMPGVVDNAVFYGSPGLELPSVDRLPVAAGHAFAMQADNDPIHYVPDVFKYGA  453

Query  353  WGSDGADTIG  362
            +G +  DT G
Sbjct  454  YGPNPTDTPG  463


>gi|226361364|ref|YP_002779142.1| hypothetical protein ROP_19500 [Rhodococcus opacus B4]
 gi|226239849|dbj|BAH50197.1| hypothetical protein [Rhodococcus opacus B4]
Length=549

 Score =  121 bits (303),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 90/223 (41%), Positives = 117/223 (53%), Gaps = 31/223 (13%)

Query  143  RLADIAAIQEALRV-PDSHLIYVARPDDPADMIPAVTAVGDPFTADHVSVTVPGVSGTTR  201
            +L D+  ++E +R  PD  L+ +        M  A  A+G+P TADH+SVT PG+  TT 
Sbjct  262  KLRDLDNLEELVRAHPDGRLMLLDLQSGERTM--AAFALGNPDTADHISVTTPGID-TTV  318

Query  202  QTIATMTQETRGLREE-ARVIAHSVGESENVATIAWVGYQPPP-----------------  243
             ++A M  E   L+ E  R +  S    + V+TIAW+GYQPP                  
Sbjct  319  GSLAGMADEATALKAEIERQLDLSGRTDDTVSTIAWLGYQPPTTTGPGNFDVPFIDQNLG  378

Query  244  ---VLASWNTVDDDLAQAGAPKLEAFLRDLQAGSHNPG-HTTALFGHSYGSLLSGIALKD  299
               ++ SW +   D A AGAPKL AF   L   S  P  H TAL GHSYGS   G+AL+D
Sbjct  379  RGWLVDSWQS---DRATAGAPKLAAFYEGLDVASQTPDPHITAL-GHSYGSCTQGLALQD  434

Query  300  -GASSLVDNAVLYGSPGFDATSPAKLGMNDHNFFVMTTPDDPI  341
             G    VD+AV YGSPGF A   + LG+   + FVM   DDPI
Sbjct  435  AGPRQPVDDAVFYGSPGFHANDESDLGLARGHGFVMRAHDDPI  477


>gi|226304390|ref|YP_002764348.1| hypothetical protein RER_09010 [Rhodococcus erythropolis PR4]
 gi|226183505|dbj|BAH31609.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length=473

 Score =  120 bits (302),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 74/176 (43%), Positives = 98/176 (56%), Gaps = 11/176 (6%)

Query  176  AVTAVGDPFTADHVSVTVPGVSGTTRQTIATMTQETRGLREEARVIAHSVGESENVATIA  235
            A  A+GDP TADH+SVT+PG++   + ++  M  E   LR EA       G  E+VATIA
Sbjct  229  AAIAIGDPDTADHISVTIPGLNTNVKDSMRGMVGEATRLRAEAMHQLELAGRKESVATIA  288

Query  236  WVGYQPPPVL---------ASWNTVDDDLAQAGAPKLEAFLRDLQAGSHNPG-HTTALFG  285
            W+GY  P V+         AS++      A   A  L +F   L+A S N   H TAL G
Sbjct  289  WIGYDAPQVIGPGKFDIGRASFDVSRSSKAGIAADALGSFFHGLRAASVNDRVHITAL-G  347

Query  286  HSYGSLLSGIALKDGASSLVDNAVLYGSPGFDATSPAKLGMNDHNFFVMTTPDDPI  341
            HSYGSL + +AL+ GAS+ VD+ V YGSPG  A   + LG+ D + +VM    D I
Sbjct  348  HSYGSLATSLALQRGASAAVDDVVFYGSPGVRAKVESDLGIADRHVYVMKAEGDSI  403


>gi|296392595|ref|YP_003657479.1| hypothetical protein Srot_0159 [Segniliparus rotundus DSM 44985]
 gi|296179742|gb|ADG96648.1| protein of unknown function DUF1023 [Segniliparus rotundus DSM 
44985]
Length=583

 Score =  120 bits (301),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 101/298 (34%), Positives = 131/298 (44%), Gaps = 49/298 (16%)

Query  102  PGAPGGMSSGDIDAIDAANRALLQDMLAEYSRLPDGQVKTDRLADIAAIQEALRVPDSHL  161
            P   GG       A DAANR L+    AE +RL   + +  R  D      A    D+ L
Sbjct  216  PDWIGGRDGVSASARDAANRTLIP---AERARLTAERDRLQRELDSNPFGGAFSDKDAQL  272

Query  162  IYVARPDDPADMI------------------------PAVTAVGDPFTADHVSVTVPGVS  197
             YV +  D  D I                         A  A+GDP TADH+SVT PG+ 
Sbjct  273  WYVKKKLDDLDAIDRSLNQYGKDAKLLVLDMRSGERGKAAIALGDPDTADHISVTTPGLD  332

Query  198  GTTRQTIATMTQETRGLREEARVIAHSVGE-SENVATIAWVGYQPP----PVLASW----  248
             +   ++  M  E   L+ E   I  + G+  E V+TIAW+GYQ P    P    W    
Sbjct  333  SSVGGSLNGMVGEASDLKSETERILRAQGKPGETVSTIAWIGYQCPHVDGPGWGDWARGG  392

Query  249  -NTVDDDLAQAGAPKLEAFLRDLQAGSH------NPGHTTALFGHSYGSLLSGIALKDGA  301
             +   D LA+AGA  L  F + L A  H      + G      GHSYGSL + +AL+   
Sbjct  393  ADVSQDTLAKAGAQDLSRFYQGLNAAWHPSDGRADTGPQITALGHSYGSLTTSLALQQTP  452

Query  302  SSLVDNAVLYGSPGFDATSPAKLGMNDHNFFVMTTPDDPIRYPARLAPLHGWGSDGAD  359
              +V NAVLYGSPG +A S  +L M   + F M    D I+  A      G G+ GAD
Sbjct  453  PGVVQNAVLYGSPGIEADSAQQLHMQAGHIFAMQGDGDTIKLAA------GTGNFGAD  504


>gi|262202342|ref|YP_003273550.1| hypothetical protein Gbro_2415 [Gordonia bronchialis DSM 43247]
 gi|262085689|gb|ACY21657.1| protein of unknown function DUF1023 [Gordonia bronchialis DSM 
43247]
Length=557

 Score =  117 bits (293),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 79/214 (37%), Positives = 114/214 (54%), Gaps = 16/214 (7%)

Query  143  RLADIAAIQEAL-------RVPDSHLIYVARPDDPADMIPAVTAVGDPFTADHVSVTVPG  195
            ++AD+  +QE +       + P+  ++ +   D   +   AV A+ +P  ADHVSVT PG
Sbjct  273  KIADVEKLQELIGENSWSPQNPEGRMLLLLDMDS-GEQGKAVVAIANPDDADHVSVTTPG  331

Query  196  VSGTTRQTIATMTQETRGLREEA-RVIAHSVGESENVATIAWVGYQPP----PVLASWNT  250
            +    R + A    ET  LR EA R +  +  + ++V+TI W+GY+PP      L  W+ 
Sbjct  332  MDTNIRNSFAGAIGETESLRHEAYRQLRLAGRDGQSVSTIMWLGYEPPDNRGSRLPGWSF  391

Query  251  VD---DDLAQAGAPKLEAFLRDLQAGSHNPGHTTALFGHSYGSLLSGIALKDGASSLVDN  307
            ++    D A  GAP L AF R L A S+        FGHSYGSL  GIAL+      VD+
Sbjct  392  LEVAQQDRATNGAPDLVAFYRGLDATSNKTDPHLVAFGHSYGSLTQGIALQQPGGHPVDD  451

Query  308  AVLYGSPGFDATSPAKLGMNDHNFFVMTTPDDPI  341
            A  YGSPGF+A + A+LG+   + +VM    D I
Sbjct  452  AAFYGSPGFEAGTEAELGLAPGHGYVMQGDRDWI  485


>gi|317507796|ref|ZP_07965498.1| hypothetical protein HMPREF9336_01870 [Segniliparus rugosus ATCC 
BAA-974]
 gi|316253915|gb|EFV13283.1| hypothetical protein HMPREF9336_01870 [Segniliparus rugosus ATCC 
BAA-974]
Length=586

 Score =  117 bits (293),  Expect = 4e-24, Method: Compositional matrix adjust.
 Identities = 85/228 (38%), Positives = 119/228 (53%), Gaps = 32/228 (14%)

Query  143  RLADIAAIQEAL-RVPDSHLIYVARPDDPADMIPAVTAVGDPFTADHVSVTVPGVSGTTR  201
            RL    A+Q++L +  D+  + V  PD       A+ A+GDP TADH+SVT PGV+ +  
Sbjct  274  RLEGAKAVQQSLDKYGDNAKLMVLDPDYGMRGRAAI-AMGDPDTADHISVTTPGVNSSPG  332

Query  202  QTIATMTQETRGLR-EEARVIAHSVGESENVATIAWVGYQPPPVLASWNTVD--------  252
            Q+IA MT E   L+ E  RV+  +   +E V+TIAW+GY+PP      N  D        
Sbjct  333  QSIAGMTDEAAALKGETERVLERNGRGNETVSTIAWIGYEPPQASLDGNNSDQIGPGGWR  392

Query  253  -----------DDLAQAGAPKLEAFLRDLQAGSH--------NPGHTTALFGHSYGSLLS  293
                       D  A+ GA  L +F   L A  H        NP H TA+ GHSYGSL +
Sbjct  393  DEPGGLADVSSDAKAKIGAASLSSFYEGLSAAWHPADGDSSTNP-HITAV-GHSYGSLTT  450

Query  294  GIALKDGASSLVDNAVLYGSPGFDATSPAKLGMNDHNFFVMTTPDDPI  341
             +AL+   + +VDNAV YGSPG + +SP +L +   + + M   +D I
Sbjct  451  SLALQQMQTGVVDNAVFYGSPGLELSSPDQLPVPAGHAYAMQADNDHI  498


>gi|317509263|ref|ZP_07966884.1| hypothetical protein HMPREF9336_03256 [Segniliparus rugosus ATCC 
BAA-974]
 gi|316252473|gb|EFV11922.1| hypothetical protein HMPREF9336_03256 [Segniliparus rugosus ATCC 
BAA-974]
Length=486

 Score =  117 bits (293),  Expect = 4e-24, Method: Compositional matrix adjust.
 Identities = 78/239 (33%), Positives = 117/239 (49%), Gaps = 31/239 (12%)

Query  143  RLADIAAIQEALRV-PDSHLIYVARPDDPADMIPAVTAVGDPFTADHVSVTVPGVSGTTR  201
            +L  +AA++ +L   P++ L+ +       +   A  A+GDP TADH+S+T PG++ +  
Sbjct  186  KLEGLAAVERSLAAHPEAKLLLLDMSS--GERGKAAIAIGDPDTADHISITTPGINSSPG  243

Query  202  QTIATMTQETRGLREEARVIAHSVGESENVATIAWVGYQPPPVLASWNTVD---------  252
            QT+  M  E   L+ E   I    G  E+VA+IAW+GY PP    +W   +         
Sbjct  244  QTLTGMVDEAAKLKSEGETILRKQGSDESVASIAWIGYDPPQF--NWEGTNPGPGWGDEL  301

Query  253  --------DDLAQAGAPKLEAFLRDLQAGSHNPGHTTA------LFGHSYGSLLSGIALK  298
                    D  A+AG+     F + L A       ++A      + GHSYGSL+  +AL+
Sbjct  302  KGVYELSQDSRARAGSESFARFCQGLAAVWRPAADSSAQRPDITVLGHSYGSLVVSLALQ  361

Query  299  DGASSLVDNAVLYGSPGFDATS---PAKLGMNDHNFFVMTTPDDPIRYPARLAPLHGWG  354
                  V NAV YGSPG D T    P +LG+  ++ FV+ + DDPIR      P   +G
Sbjct  362  QLPKGTVSNAVFYGSPGIDMTETADPDQLGLAPNHAFVLESDDDPIRRIPEWGPRIAYG  420


>gi|296392493|ref|YP_003657377.1| hypothetical protein Srot_0053 [Segniliparus rotundus DSM 44985]
 gi|296179640|gb|ADG96546.1| protein of unknown function DUF1023 [Segniliparus rotundus DSM 
44985]
Length=586

 Score =  113 bits (282),  Expect = 7e-23, Method: Compositional matrix adjust.
 Identities = 88/281 (32%), Positives = 129/281 (46%), Gaps = 38/281 (13%)

Query  108  MSSGDIDAIDAANRALLQDMLAEYSRLPDGQVKTD------RLADIAAIQEALRVPDSHL  161
            M  GDI  + A    L + + +E+         +D      RL  + A ++ALR      
Sbjct  231  MLPGDIARLQAEVDRLQKQLDSEFGHGAFSNTDSDLWYAQRRLEGLQATEKALRDNPGTK  290

Query  162  IYVARPDDPADMIPAVTAVGDPFTADHVSVTVPGVSGTTRQTIATMTQETRGLREEARVI  221
            + V  PD       A+   GDP TA+H+S++ PGV+ +  Q+I  MT+E   L+ E   +
Sbjct  291  LLVLDPDYGTRGRVAI-GTGDPDTANHISISTPGVNSSPGQSIGEMTKEAVALKTETENV  349

Query  222  AHSVGE-SENVATIAWVGYQPPPVLASWNTVD----------------------DDLAQA  258
              + G  +E V+TI+W+GY+PP        +D                      D  A+A
Sbjct  350  LKANGHGNETVSTISWIGYEPPQAQLDPQHLDKTGDVGPGGLRDEPGGLSDVASDAKAKA  409

Query  259  GAPKLEAFLRDLQAGSH-------NPGHTTALFGHSYGSLLSGIALKDGASSLVDNAVLY  311
            GA  L  F   + A  H          H TAL GHSYGSL + +AL+   + +VDNAV Y
Sbjct  410  GAASLSQFYEGISAAWHPADGDSATSPHITAL-GHSYGSLTTSLALQQTQTGVVDNAVFY  468

Query  312  GSPGFDATSPAKLGMNDHNFFVMTTPDDPIRYPARLAPLHG  352
            GSPG +  S  +L +   + + M  P DPI Y   L   +G
Sbjct  469  GSPGLELPSLDRLPVATGHAYSMQAPSDPINYVPNLTEHYG  509


>gi|118467794|ref|YP_890594.1| hypothetical protein MSMEG_6381 [Mycobacterium smegmatis str. 
MC2 155]
 gi|118169081|gb|ABK69977.1| conserved hypothetical protein [Mycobacterium smegmatis str. 
MC2 155]
Length=607

 Score =  107 bits (268),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 87/236 (37%), Positives = 118/236 (50%), Gaps = 47/236 (19%)

Query  143  RLADIAAIQEALRV-----PDSHLIYVARPDDPADMIPAVTAVGDPFTADHVSVTVPGVS  197
            RL D  A+++AL V     P+ +L+ +  P+D      A  AVG+P TA+HV+VT PGV 
Sbjct  287  RLDDAKAMKDALSVDGKYDPNKYLMLLEFPEDREPR--AAIAVGNPDTAEHVTVTTPGV-  343

Query  198  GTTRQTIATMTQETRGLREEARVIAHSVGES-ENVATIAWVGYQPPPVLASWNTVDDDLA  256
            GT  +++  M  E   LR+EA+      G S E VATIAW+GY+PP         D  +A
Sbjct  344  GTRPESLGGMVSEADALRQEAQTQLDRAGRSGEQVATIAWLGYEPP-------GTDISVA  396

Query  257  QAG--------APKLEAFLRDLQA-GSHNPGHTTALFGHSYGSLLSGIALKD-GASSLVD  306
            +AG        AP L  F R + A   H      + FGHSYGSL +  AL + G + +VD
Sbjct  397  EAGFERRANEAAPDLADFYRGINATNEHGSDVHLSAFGHSYGSLTTAQALYELGETGVVD  456

Query  307  NAVLYGSPGFDAT-------SP--------------AKLGMNDHNFFVMTTPDDPI  341
            +A  YGSPG   T       SP              + + + D   FVM+ P DPI
Sbjct  457  DAAFYGSPGLGHTDSTETYISPRGVPIEVMAPIRDESDMFLADGRAFVMSAPGDPI  512


>gi|289751454|ref|ZP_06510832.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289692041|gb|EFD59470.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=247

 Score =  107 bits (266),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 70/159 (45%), Positives = 94/159 (60%), Gaps = 15/159 (9%)

Query  210  ETRGLREEARVIAHSVGESENVATIAWVGYQPPPVLAS-------WNTVDDDLAQAGAPK  262
            E R LR E     ++ G+  +VATIAW+GY PPP           W T+ D  A AGA  
Sbjct  3    EARDLRSEVIRQLNAAGKPASVATIAWMGYHPPPNPLDTGSAGDLWQTMTDGQAHAGAAD  62

Query  263  LEAFLRDLQAGSHNP-GHTTALFGHSYGSLLSGIALKD---GASSLVDNAVLYGSPGFDA  318
            L  +L+ ++A  +NP GH T L GHSYGSL + +AL+D    ++  V++ V YGSPG + 
Sbjct  63   LSRYLQQVRA--NNPSGHLTVL-GHSYGSLTASLALQDLDAQSAHPVNDVVFYGSPGLEL  119

Query  319  TSPAKLGMNDHNFFVMTTPDDPI-RYPARLAPLHGWGSD  356
             SPA+LG++  + +VM  P D I    A LAPLHGWG D
Sbjct  120  YSPAQLGLDHGHAYVMQAPHDLITNLVAPLAPLHGWGLD  158


>gi|296395288|ref|YP_003660172.1| hypothetical protein Srot_2912 [Segniliparus rotundus DSM 44985]
 gi|296182435|gb|ADG99341.1| protein of unknown function DUF1023 [Segniliparus rotundus DSM 
44985]
Length=431

 Score =  106 bits (264),  Expect = 7e-21, Method: Compositional matrix adjust.
 Identities = 73/237 (31%), Positives = 115/237 (49%), Gaps = 27/237 (11%)

Query  143  RLADIAAIQEALRV-PDSHLIYVARPDDPADMIPAVTAVGDPFTADHVSVTVPGVSGTTR  201
            ++  + A+Q AL   PD+ L+ +       +   A  A+GDP TA+H+S+T PG++ +  
Sbjct  131  KIEGLEAVQRALAAHPDAKLLLLDM--GAGERGRAAIAIGDPDTAEHLSITTPGINSSPG  188

Query  202  QTIATMTQETRGLREEARVIAHSVGESENVATIAWVGYQPP---------------PVLA  246
            QT+  M  E   L+ E   I    G   +VA++AW+GY PP                +  
Sbjct  189  QTLTGMVDEAAKLKSEGEAILRKQGSPGSVASVAWIGYDPPQFKWEGSNPGPGWADELKG  248

Query  247  SWNTVDDDLAQAGAPKLEAFLRDLQAGSHNPGHTTAL------FGHSYGSLLSGIALKDG  300
             +    D  A+ G+     F + L A       ++A+       GHSYGSL+  +AL+  
Sbjct  249  LFELSQDTRARRGSESFARFCQGLAAVWRPAPDSSAMRPNITVLGHSYGSLVVSLALQQL  308

Query  301  ASSLVDNAVLYGSPGFDAT---SPAKLGMNDHNFFVMTTPDDPIRYPARLAPLHGWG  354
               +VDNAV YGSPG D T   +  +LG+   + FV+ + DDPI+      P+  +G
Sbjct  309  PKGVVDNAVFYGSPGIDMTETGNAGQLGLGPGHAFVLQSDDDPIQRIPGWGPMIAYG  365


>gi|262200424|ref|YP_003271632.1| hypothetical protein Gbro_0405 [Gordonia bronchialis DSM 43247]
 gi|262083771|gb|ACY19739.1| protein of unknown function DUF1023 [Gordonia bronchialis DSM 
43247]
Length=469

 Score =  106 bits (264),  Expect = 8e-21, Method: Compositional matrix adjust.
 Identities = 65/178 (37%), Positives = 91/178 (52%), Gaps = 10/178 (5%)

Query  176  AVTAVGDPFTADHVSVTVPGVSGTTRQTIATMTQETRGLREEARVIAHSVGE-SENVATI  234
            A  ++G+P  ADH++VT PG++   R ++  M  E+  LR E        G   + VATI
Sbjct  216  AAISIGNPDDADHIAVTTPGMNTNIRGSMTDMLSESNALRAETVSQLERAGAPGQKVATI  275

Query  235  AWVGYQPPPV--------LASW-NTVDDDLAQAGAPKLEAFLRDLQAGSHNPGHTTALFG  285
             W+ Y+PP            SW   +  D A  GA  L  F   L+A S          G
Sbjct  276  TWLDYEPPDKGNTRPFADQYSWAEAMQQDRAVVGARDLARFYNCLEATSTRDDPHIVALG  335

Query  286  HSYGSLLSGIALKDGASSLVDNAVLYGSPGFDATSPAKLGMNDHNFFVMTTPDDPIRY  343
            HSYGSL  G+AL++     VD+AV YGSPGF+A+   +LG+   + +VM   DD IR+
Sbjct  336  HSYGSLTQGLALQESGGHPVDDAVFYGSPGFEASDEPELGLRQGHGYVMQGDDDDIRH  393


>gi|134097612|ref|YP_001103273.1| hypothetical protein SACE_1016 [Saccharopolyspora erythraea NRRL 
2338]
 gi|291008469|ref|ZP_06566442.1| hypothetical protein SeryN2_28443 [Saccharopolyspora erythraea 
NRRL 2338]
 gi|133910235|emb|CAM00348.1| hypothetical protein SACE_1016 [Saccharopolyspora erythraea NRRL 
2338]
Length=566

 Score =  103 bits (258),  Expect = 4e-20, Method: Compositional matrix adjust.
 Identities = 86/271 (32%), Positives = 130/271 (48%), Gaps = 36/271 (13%)

Query  96   FRQAPPPGAPGGMSSGDIDAI-----DAANRALLQD----MLAEYSRLPDGQVKTD----  142
             R+APP         G+ D I     D ANR  + D    + AE + +  G V  D    
Sbjct  220  LRKAPPAWL------GNRDGIPAQVRDVANRNRIDDEREALNAEKAEIERGGVSDDERKR  273

Query  143  ------RLADIAAIQEAL-RVPDSHLIYVARPDDPADMIPAVTAVGDPFTADHVSVTVPG  195
                  ++  I A+++ L R P   L+ +   D   + + A  AVGD  TADHVSV  PG
Sbjct  274  LEEVTHKIESIGAVEKTLERQPSRQLLVL---DSSGERLKAAVAVGDVDTADHVSVFTPG  330

Query  196  VSGTTRQTIATMTQETRGLREEARVIAHSVGESENVATIAWVGYQPPP--VLASW--NTV  251
            ++ T   T+  +  +   LR +++  +   GE   VA I+W+GY+ P     A W  N+V
Sbjct  331  LNSTVNGTLEGLDHQMNQLRAQSQHESDRHGEGGQVAAISWIGYETPQDHEHAPWHENSV  390

Query  252  D-DDLAQAGAPKLEAFLRDLQAGSHNPGHTTALFGHSYGSLLSGIALKDGASSLVDNAVL  310
               D A+ G  KL  F + + A      H TAL GHSYGS  +G AL+ G    VD+A++
Sbjct  391  TRSDAAENGGAKLNEFFKGINASRDTDPHLTAL-GHSYGSTTTGYALQGGGHG-VDDAIV  448

Query  311  YGSPGFDATSPAKLGMNDHNFFVMTTPDDPI  341
            +GSPG        L + + + + +   +DP+
Sbjct  449  FGSPGVGTDDVEDLHVPEGHTYRIEARNDPV  479


>gi|293190636|ref|ZP_06608927.1| conserved hypothetical protein [Actinomyces odontolyticus F0309]
 gi|292820853|gb|EFF79811.1| conserved hypothetical protein [Actinomyces odontolyticus F0309]
Length=561

 Score = 97.1 bits (240),  Expect = 5e-18, Method: Compositional matrix adjust.
 Identities = 66/207 (32%), Positives = 106/207 (52%), Gaps = 8/207 (3%)

Query  142  DRLADIAAIQEALRVPDSHLIYVARPDDPADMIPAVTAVGDPFTADHVSVTVPGVSGTTR  201
            +RLAD+ A+++ +R      + V  P +  + + A  A+GD   A HV+  VPG+    R
Sbjct  283  NRLADLEAVRDQVRGNAGATLLVLEPGELGENVRAAIAIGDVDNAQHVATFVPGMGSNFR  342

Query  202  QTIATMTQETRGLREEARVIAHSVGESENVATIAWVGYQPPP-VLASWN--TVDDDLAQA  258
                   +  + L+  A         S  VATIAW+GY+ PP ++ +W+   +  D A+A
Sbjct  343  DNGRLNVEFAKNLKWAADTYGAPTDGS--VATIAWIGYEAPPDIVKTWDPSVMSIDKAEA  400

Query  259  GAPKLEAFLRDLQAGSHNPGHTT--ALFGHSYGSLLSGIALKDGASSLVDNAVLYGSPGF  316
            GA KL  F+  + +     G     ++  HSYGS  +G+A++D    +VD+ V  GSPG 
Sbjct  401  GAEKLNGFVTGIHSWRSERGLDVHQSIIPHSYGSTTAGVAMRDIGEGVVDDLVYTGSPGA  460

Query  317  DATSPAKLGMNDHNFFVMTTPD-DPIR  342
               S   LG++  + +V  TP  DP+R
Sbjct  461  GVHSVGTLGVDPEHTWVSATPHLDPVR  487


>gi|240169358|ref|ZP_04748017.1| hypothetical protein MkanA1_08596 [Mycobacterium kansasii ATCC 
12478]
Length=546

 Score = 94.4 bits (233),  Expect = 3e-17, Method: Compositional matrix adjust.
 Identities = 70/203 (35%), Positives = 109/203 (54%), Gaps = 9/203 (4%)

Query  141  TDRLADIAAIQEAL-RVPDSHLIYVARPDDPADMIPAVTAVGDPFTADHVSVTVPGVSGT  199
            T++LAD+ A+Q AL   P S LI +    +   ++ AV  VGD   A  V VTV G++  
Sbjct  242  TEKLADLQALQRALTNNPGSSLILLDTASNSRKVLAAV-GVGDVDNAQRVGVTVGGLNTR  300

Query  200  TRQTIATMTQETRGLREEARVIAHSVG--ESENVATIAWVGYQPPPVLASWNTVDDDLAQ  257
               ++  M +E +  + +A  +    G    + VA+IAW+GY  P  L   +   D  A+
Sbjct  301  VSSSVEAMLREAQVQQGKASDLRRLAGAPNYDAVASIAWLGYDAPDSLK--DVTHDWSAR  358

Query  258  AGAPKLEAFLRDLQAGSHNPGHTTALFGHSYGSLLSGIALKDGASSLVDNAVLYGSPGFD  317
              A  L  F + + AGS+        FGHSYGSL++ +AL+ GA   V + VLYGSPG +
Sbjct  359  DAAGPLNRFYKGIAAGSNVADQHITAFGHSYGSLVTSLALQQGAP--VSDVVLYGSPGTE  416

Query  318  ATSPAKLGMN-DHNFFVMTTPDD  339
             T+ ++LG+   H ++++   DD
Sbjct  417  LTNASQLGVQPGHAYYMIGVNDD  439


>gi|323720675|gb|EGB29753.1| hypothetical protein TMMG_02955 [Mycobacterium tuberculosis CDC1551A]
 gi|339293969|gb|AEJ46080.1| hypothetical protein CCDC5079_0890 [Mycobacterium tuberculosis 
CCDC5079]
Length=336

 Score = 94.4 bits (233),  Expect = 3e-17, Method: Compositional matrix adjust.
 Identities = 78/248 (32%), Positives = 123/248 (50%), Gaps = 16/248 (6%)

Query  105  PGGMSSGDIDAIDAANRALLQDMLAEYSRLPDGQVK--------TDRLADIAAIQEALRV  156
            P  + + D   I   N   L  +  E +RL +G +         TD+LAD+ A+++ L  
Sbjct  50   PNTLRNRDGIPIAVRNELNLSVLQRELTRLQNGWLSRDGVWHTDTDKLADLRALRDTLAA  109

Query  157  -PDSHLIYVARPDDPADMIPAVTAVGDPFTADHVSVTVPGVSGTTRQTIATMTQETRGLR  215
             P + LI +    DP  ++ AV  VGD   A+ V VT+ G++     ++  M +E    R
Sbjct  110  HPGTSLILLDTASDPRKVLAAV-GVGDVDNAERVGVTMGGLNTRVSSSVGDMVKEAGIQR  168

Query  216  EEARVIAHSVG--ESENVATIAWVGYQPPPVLASWNTVDDDLAQAGAPKLEAFLRDLQAG  273
             +A  +    G    + VA+IAW+GY  P  L   + + D  A+  A  L  F + L A 
Sbjct  169  AKAAELRERAGWPNYDAVASIAWLGYDAPDGLK--DVMHDWSARDAAGPLNRFDKGLAAT  226

Query  274  SHNPGHTTALFGHSYGSLLSGIALKDGASSLVDNAVLYGSPGFDATSPAKLGMNDHNFFV  333
            ++        FGHSYGSL++ +AL+ GA   V + VLYGSPG + T  ++LG+   + F 
Sbjct  227  TNVSDQHITAFGHSYGSLVTSLALQQGAP--VSDVVLYGSPGTELTHASQLGVEPGHAFY  284

Query  334  MTTPDDPI  341
            M   +D +
Sbjct  285  MIGVNDHV  292


>gi|308374145|ref|ZP_07435048.2| hypothetical protein TMFG_02779 [Mycobacterium tuberculosis SUMu006]
 gi|308342838|gb|EFP31689.1| hypothetical protein TMFG_02779 [Mycobacterium tuberculosis SUMu006]
Length=317

 Score = 93.6 bits (231),  Expect = 5e-17, Method: Compositional matrix adjust.
 Identities = 78/248 (32%), Positives = 123/248 (50%), Gaps = 16/248 (6%)

Query  105  PGGMSSGDIDAIDAANRALLQDMLAEYSRLPDGQVK--------TDRLADIAAIQEALRV  156
            P  + + D   I   N   L  +  E +RL +G +         TD+LAD+ A+++ L  
Sbjct  31   PNTLRNRDGIPIAVRNELNLSVLQRELTRLQNGWLSRDGVWHTDTDKLADLRALRDTLAA  90

Query  157  -PDSHLIYVARPDDPADMIPAVTAVGDPFTADHVSVTVPGVSGTTRQTIATMTQETRGLR  215
             P + LI +    DP  ++ AV  VGD   A+ V VT+ G++     ++  M +E    R
Sbjct  91   HPGTSLILLDTASDPRKVLAAV-GVGDVDNAERVGVTMGGLNTRVSSSVGDMVKEAGIQR  149

Query  216  EEARVIAHSVG--ESENVATIAWVGYQPPPVLASWNTVDDDLAQAGAPKLEAFLRDLQAG  273
             +A  +    G    + VA+IAW+GY  P  L   + + D  A+  A  L  F + L A 
Sbjct  150  AKAAELRERAGWPNYDAVASIAWLGYDAPDGLK--DVMHDWSARDAAGPLNRFDKGLAAT  207

Query  274  SHNPGHTTALFGHSYGSLLSGIALKDGASSLVDNAVLYGSPGFDATSPAKLGMNDHNFFV  333
            ++        FGHSYGSL++ +AL+ GA   V + VLYGSPG + T  ++LG+   + F 
Sbjct  208  TNVSDQHITAFGHSYGSLVTSLALQQGAP--VSDVVLYGSPGTELTHASQLGVEPGHAFY  265

Query  334  MTTPDDPI  341
            M   +D +
Sbjct  266  MIGVNDHV  273


>gi|148822172|ref|YP_001286926.1| hypothetical protein TBFG_10981 [Mycobacterium tuberculosis F11]
 gi|253800009|ref|YP_003033010.1| hypothetical protein TBMG_03025 [Mycobacterium tuberculosis KZN 
1435]
 gi|254231270|ref|ZP_04924597.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 18 more sequence titles
 
gi|254549945|ref|ZP_05140392.1| hypothetical protein Mtube_05698 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|308231680|ref|ZP_07413432.2| hypothetical protein TMAG_00899 [Mycobacterium tuberculosis SUMu001]
 gi|308370116|ref|ZP_07420327.2| hypothetical protein TMBG_01652 [Mycobacterium tuberculosis SUMu002]
 gi|308371810|ref|ZP_07426331.2| hypothetical protein TMDG_03567 [Mycobacterium tuberculosis SUMu004]
 gi|308377562|ref|ZP_07479671.2| hypothetical protein TMIG_03522 [Mycobacterium tuberculosis SUMu009]
 gi|308378773|ref|ZP_07483863.2| hypothetical protein TMJG_02630 [Mycobacterium tuberculosis SUMu010]
 gi|308379916|ref|ZP_07488099.2| hypothetical protein TMKG_03676 [Mycobacterium tuberculosis SUMu011]
 gi|308397517|ref|ZP_07492600.2| hypothetical protein TMLG_01664 [Mycobacterium tuberculosis SUMu012]
 gi|124600329|gb|EAY59339.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|148720699|gb|ABR05324.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|253321512|gb|ACT26115.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
1435]
 gi|308216441|gb|EFO75840.1| hypothetical protein TMAG_00899 [Mycobacterium tuberculosis SUMu001]
 gi|308325311|gb|EFP14162.1| hypothetical protein TMBG_01652 [Mycobacterium tuberculosis SUMu002]
 gi|308335354|gb|EFP24205.1| hypothetical protein TMDG_03567 [Mycobacterium tuberculosis SUMu004]
 gi|308355291|gb|EFP44142.1| hypothetical protein TMIG_03522 [Mycobacterium tuberculosis SUMu009]
 gi|308359337|gb|EFP48188.1| hypothetical protein TMJG_02630 [Mycobacterium tuberculosis SUMu010]
 gi|308363244|gb|EFP52095.1| hypothetical protein TMKG_03676 [Mycobacterium tuberculosis SUMu011]
 gi|308366901|gb|EFP55752.1| hypothetical protein TMLG_01664 [Mycobacterium tuberculosis SUMu012]
Length=320

 Score = 93.6 bits (231),  Expect = 5e-17, Method: Compositional matrix adjust.
 Identities = 78/248 (32%), Positives = 123/248 (50%), Gaps = 16/248 (6%)

Query  105  PGGMSSGDIDAIDAANRALLQDMLAEYSRLPDGQVK--------TDRLADIAAIQEALRV  156
            P  + + D   I   N   L  +  E +RL +G +         TD+LAD+ A+++ L  
Sbjct  34   PNTLRNRDGIPIAVRNELNLSVLQRELTRLQNGWLSRDGVWHTDTDKLADLRALRDTLAA  93

Query  157  -PDSHLIYVARPDDPADMIPAVTAVGDPFTADHVSVTVPGVSGTTRQTIATMTQETRGLR  215
             P + LI +    DP  ++ AV  VGD   A+ V VT+ G++     ++  M +E    R
Sbjct  94   HPGTSLILLDTASDPRKVLAAV-GVGDVDNAERVGVTMGGLNTRVSSSVGDMVKEAGIQR  152

Query  216  EEARVIAHSVG--ESENVATIAWVGYQPPPVLASWNTVDDDLAQAGAPKLEAFLRDLQAG  273
             +A  +    G    + VA+IAW+GY  P  L   + + D  A+  A  L  F + L A 
Sbjct  153  AKAAELRERAGWPNYDAVASIAWLGYDAPDGLK--DVMHDWSARDAAGPLNRFDKGLAAT  210

Query  274  SHNPGHTTALFGHSYGSLLSGIALKDGASSLVDNAVLYGSPGFDATSPAKLGMNDHNFFV  333
            ++        FGHSYGSL++ +AL+ GA   V + VLYGSPG + T  ++LG+   + F 
Sbjct  211  TNVSDQHITAFGHSYGSLVTSLALQQGAP--VSDVVLYGSPGTELTHASQLGVEPGHAFY  268

Query  334  MTTPDDPI  341
            M   +D +
Sbjct  269  MIGVNDHV  276


>gi|15608103|ref|NP_215478.1| hypothetical protein Rv0963c [Mycobacterium tuberculosis H37Rv]
 gi|15840389|ref|NP_335426.1| hypothetical protein MT0992 [Mycobacterium tuberculosis CDC1551]
 gi|31792152|ref|NP_854645.1| hypothetical protein Mb0988c [Mycobacterium bovis AF2122/97]
 36 more sequence titles
 
gi|148660743|ref|YP_001282266.1| hypothetical protein MRA_0971 [Mycobacterium tuberculosis H37Ra]
 gi|167967737|ref|ZP_02550014.1| hypothetical protein MtubH3_06753 [Mycobacterium tuberculosis 
H37Ra]
 gi|289442380|ref|ZP_06432124.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289555255|ref|ZP_06444465.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|289568937|ref|ZP_06449164.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289573594|ref|ZP_06453821.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289744694|ref|ZP_06504072.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289749491|ref|ZP_06508869.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289753019|ref|ZP_06512397.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289757048|ref|ZP_06516426.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|294996452|ref|ZP_06802143.1| hypothetical protein Mtub2_18594 [Mycobacterium tuberculosis 
210]
 gi|297633487|ref|ZP_06951267.1| hypothetical protein MtubK4_05161 [Mycobacterium tuberculosis 
KZN 4207]
 gi|297730472|ref|ZP_06959590.1| hypothetical protein MtubKR_05241 [Mycobacterium tuberculosis 
KZN R506]
 gi|306806812|ref|ZP_07443480.1| hypothetical protein TMGG_03033 [Mycobacterium tuberculosis SUMu007]
 gi|313657800|ref|ZP_07814680.1| hypothetical protein MtubKV_05236 [Mycobacterium tuberculosis 
KZN V2475]
 gi|339631025|ref|YP_004722667.1| hypothetical protein MAF_09720 [Mycobacterium africanum GM041182]
 gi|54040008|sp|P64778.1|Y988_MYCBO RecName: Full=Uncharacterized protein Mb0988c
 gi|54042496|sp|P64777.1|Y963_MYCTU RecName: Full=Uncharacterized protein Rv0963c/MT0992
 gi|3261629|emb|CAB02008.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|13880556|gb|AAK45240.1| hypothetical protein MT0992 [Mycobacterium tuberculosis CDC1551]
 gi|31617740|emb|CAD93849.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|148504895|gb|ABQ72704.1| hypothetical protein MRA_0971 [Mycobacterium tuberculosis H37Ra]
 gi|289415299|gb|EFD12539.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289439887|gb|EFD22380.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|289538025|gb|EFD42603.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289542691|gb|EFD46339.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289685222|gb|EFD52710.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289690078|gb|EFD57507.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289693606|gb|EFD61035.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289712612|gb|EFD76624.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|308346718|gb|EFP35569.1| hypothetical protein TMGG_03033 [Mycobacterium tuberculosis SUMu007]
 gi|326904811|gb|EGE51744.1| hypothetical protein TBPG_02730 [Mycobacterium tuberculosis W-148]
 gi|328459751|gb|AEB05174.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
4207]
 gi|339297607|gb|AEJ49717.1| hypothetical protein CCDC5180_0880 [Mycobacterium tuberculosis 
CCDC5180]
 gi|339330381|emb|CCC26044.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
 gi|344218789|gb|AEM99419.1| hypothetical protein MTCTRI2_0986 [Mycobacterium tuberculosis 
CTRI-2]
Length=266

 Score = 93.2 bits (230),  Expect = 6e-17, Method: Compositional matrix adjust.
 Identities = 73/223 (33%), Positives = 115/223 (52%), Gaps = 16/223 (7%)

Query  130  EYSRLPDGQVK--------TDRLADIAAIQEALRV-PDSHLIYVARPDDPADMIPAVTAV  180
            E +RL +G +         TD+LAD+ A+++ L   P + LI +    DP  ++ AV  V
Sbjct  5    ELTRLQNGWLSRDGVWHTDTDKLADLRALRDTLAAHPGTSLILLDTASDPRKVLAAV-GV  63

Query  181  GDPFTADHVSVTVPGVSGTTRQTIATMTQETRGLREEARVIAHSVG--ESENVATIAWVG  238
            GD   A+ V VT+ G++     ++  M +E    R +A  +    G    + VA+IAW+G
Sbjct  64   GDVDNAERVGVTMGGLNTRVSSSVGDMVKEAGIQRAKAAELRERAGWPNYDAVASIAWLG  123

Query  239  YQPPPVLASWNTVDDDLAQAGAPKLEAFLRDLQAGSHNPGHTTALFGHSYGSLLSGIALK  298
            Y  P  L   + + D  A+  A  L  F + L A ++        FGHSYGSL++ +AL+
Sbjct  124  YDAPDGLK--DVMHDWSARDAAGPLNRFDKGLAATTNVSDQHITAFGHSYGSLVTSLALQ  181

Query  299  DGASSLVDNAVLYGSPGFDATSPAKLGMNDHNFFVMTTPDDPI  341
             GA   V + VLYGSPG + T  ++LG+   + F M   +D +
Sbjct  182  QGAP--VSDVVLYGSPGTELTHASQLGVEPGHAFYMIGVNDHV  222


>gi|121636889|ref|YP_977112.1| hypothetical protein BCG_1017c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224989360|ref|YP_002644047.1| hypothetical protein JTY_0988 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|121492536|emb|CAL71004.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224772473|dbj|BAH25279.1| hypothetical protein JTY_0988 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|341600905|emb|CCC63576.1| conserved hypothetical protein [Mycobacterium bovis BCG str. 
Moreau RDJ]
Length=266

 Score = 93.2 bits (230),  Expect = 6e-17, Method: Compositional matrix adjust.
 Identities = 73/223 (33%), Positives = 115/223 (52%), Gaps = 16/223 (7%)

Query  130  EYSRLPDGQVK--------TDRLADIAAIQEALRV-PDSHLIYVARPDDPADMIPAVTAV  180
            E +RL +G +         TD+LAD+ A+++ L   P + LI +    DP  ++ AV  V
Sbjct  5    ELTRLQNGWLSRDGVWHTDTDKLADLRALRDTLAAHPGTSLILLDTASDPRKVLAAV-GV  63

Query  181  GDPFTADHVSVTVPGVSGTTRQTIATMTQETRGLREEARVIAHSVG--ESENVATIAWVG  238
            GD   A+ V VT+ G++     ++  M +E    R +A  +    G    + VA+IAW+G
Sbjct  64   GDVDNAERVGVTMGGLNTRVSSSVGDMVKEAGIQRAKAAELRERAGWPNYDAVASIAWLG  123

Query  239  YQPPPVLASWNTVDDDLAQAGAPKLEAFLRDLQAGSHNPGHTTALFGHSYGSLLSGIALK  298
            Y  P  L   + + D  A+  A  L  F + L A ++        FGHSYGSL++ +AL+
Sbjct  124  YDAPDGLK--DVMHDWSARDAAGPLNRFDKGLAATTNVSDQHITAFGHSYGSLVTSLALQ  181

Query  299  DGASSLVDNAVLYGSPGFDATSPAKLGMNDHNFFVMTTPDDPI  341
             GA   V + VLYGSPG + T  ++LG+   + F M   +D +
Sbjct  182  QGAP--VSDVVLYGSPGTELTHASQLGVEPGHAFYMIGVNDHV  222


>gi|315605643|ref|ZP_07880676.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 
str. F0310]
 gi|315312598|gb|EFU60682.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 
str. F0310]
Length=561

 Score = 93.2 bits (230),  Expect = 8e-17, Method: Compositional matrix adjust.
 Identities = 71/205 (35%), Positives = 104/205 (51%), Gaps = 15/205 (7%)

Query  142  DRLADIAAIQEALRVPDSHLIYVA-RPDDPADMIPAVTAVGDPFTADHVSVTVPGVSGTT  200
            +RLAD+ A++  L+  DS L  VA  P    + + A  A+GD   A HV+  VPG++ + 
Sbjct  284  NRLADLQALERNLQ-NDSELRLVALEPGKLGENVRAAIAIGDVDNAKHVTTFVPGMTTSC  342

Query  201  RQTIATMTQETRGLREEARVIAHSVGESENVATIAWVGYQPPPVLASWNTVDDDLA----  256
            R++     +  R L   A     +  E  +VA +AW+GY+ PP    W T D  +A    
Sbjct  343  RRSTDLNLRYARNLIHAAETAGGA--EEGSVAAVAWMGYEAPP--DPWETADPSVAFPGK  398

Query  257  -QAGAPKLEAFLRDLQAGSHNPG---HTTALFGHSYGSLLSGIALKDGASSLVDNAVLYG  312
             QAGA KL  FL  + +     G   H T +  HSYGSL  G A++D  + +VD+ V  G
Sbjct  399  AQAGAEKLNGFLTGIHSWRSERGMDVHQTPVT-HSYGSLTGGFAMRDIGADVVDDFVYTG  457

Query  313  SPGFDATSPAKLGMNDHNFFVMTTP  337
            SPG    S   LG++  + +V   P
Sbjct  458  SPGSAVQSVGTLGVDPEHTWVSAIP  482


>gi|229821763|ref|YP_002883289.1| hypothetical protein Bcav_3284 [Beutenbergia cavernae DSM 12333]
 gi|229567676|gb|ACQ81527.1| protein of unknown function DUF1023 [Beutenbergia cavernae DSM 
12333]
Length=569

 Score = 92.4 bits (228),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 86/268 (33%), Positives = 123/268 (46%), Gaps = 40/268 (14%)

Query  103  GAPGGMSSGDIDAIDAANRALLQD----MLAEYSRLPD-------GQVKTD---RLADIA  148
            G PGG+        D ANR+L+ D    + AE +RL +       G + TD   RLA++ 
Sbjct  227  GIPGGVR-------DEANRSLIDDYRAELEAEAARLREDLADNVFGSLFTDADDRLAEVE  279

Query  149  AIQEALRVPDSHL------IYVARPDDPADMIPAVTAVGDPFTADHVSVTVPGVSGTTRQ  202
                 L   ++ L      + V  P D  D + A  AVGD   ADHV+V  PG+  T   
Sbjct  280  GKLAGLDAVEATLARGGRQLLVLDPHD-GDQLLAAVAVGDVDAADHVAVFTPGLDTTVGA  338

Query  203  TIATMTQETRGLREEARVIAHSVGESENVATIAWVGYQPPPVLASWNTVDDD--------  254
            ++     +   L + A   A   G    VAT+AW+ Y+ P +  S   V  D        
Sbjct  339  SLRGYDADMAALAQRAADEAERYGTGGTVATVAWLAYRAPQLDGSVLDVLGDERTSVASA  398

Query  255  -LAQAGAPKLEAFLRDLQAGSHNPGHTTALFGHSYGSLLSGIALKDGASSLVDNAVLYGS  313
             LAQ G   L  FLR + A   +  H TAL GHSYGS  +G AL +   + VD+A ++GS
Sbjct  399  QLAQRGGADLAEFLRGINASREHDPHLTAL-GHSYGSTTTGYALAE--PTGVDDAAVFGS  455

Query  314  PGFDATSPAKLGMNDHNFFVMTTPDDPI  341
            PG   +    L + + N + +    DP+
Sbjct  456  PGLGTSDAGYLAVPEGNLYRVEAKGDPV  483


>gi|289761098|ref|ZP_06520476.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|289708604|gb|EFD72620.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
Length=266

 Score = 92.4 bits (228),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 73/223 (33%), Positives = 114/223 (52%), Gaps = 16/223 (7%)

Query  130  EYSRLPDGQVK--------TDRLADIAAIQEALRV-PDSHLIYVARPDDPADMIPAVTAV  180
            E +RL +G +         TD LAD+ A+++ L   P + LI +    DP  ++ AV  V
Sbjct  5    ELTRLQNGWLSRDGVWHTDTDNLADLRALRDTLAAHPGTSLILLDTASDPRKVLAAV-GV  63

Query  181  GDPFTADHVSVTVPGVSGTTRQTIATMTQETRGLREEARVIAHSVG--ESENVATIAWVG  238
            GD   A+ V VT+ G++     ++  M +E    R +A  +    G    + VA+IAW+G
Sbjct  64   GDVDNAERVGVTMGGLNTRVSSSVGDMVKEAGIQRAKAAELRERAGWPNYDAVASIAWLG  123

Query  239  YQPPPVLASWNTVDDDLAQAGAPKLEAFLRDLQAGSHNPGHTTALFGHSYGSLLSGIALK  298
            Y  P  L   + + D  A+  A  L  F + L A ++        FGHSYGSL++ +AL+
Sbjct  124  YDAPDGLK--DVMHDWSARDAAGPLNRFDKGLAATTNVSDQHITAFGHSYGSLVTSLALQ  181

Query  299  DGASSLVDNAVLYGSPGFDATSPAKLGMNDHNFFVMTTPDDPI  341
             GA   V + VLYGSPG + T  ++LG+   + F M   +D +
Sbjct  182  QGAP--VSDVVLYGSPGTELTHASQLGVEPGHAFYMIGVNDHV  222



Lambda     K      H
   0.316    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 797946486552


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40