BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2545
Length=92
Score E
Sequences producing significant alignments: (Bits) Value
gi|254232666|ref|ZP_04925993.1| conserved hypothetical protein [... 181 4e-44
gi|15609682|ref|NP_217061.1| hypothetical protein Rv2545 [Mycoba... 179 1e-43
gi|313659481|ref|ZP_07816361.1| antitoxin [Mycobacterium tubercu... 176 8e-43
gi|253798375|ref|YP_003031376.1| antitoxin [Mycobacterium tuberc... 176 1e-42
gi|294994345|ref|ZP_06800036.1| hypothetical protein Mtub2_07473... 73.9 8e-12
gi|289746337|ref|ZP_06505715.1| conserved hypothetical protein [... 71.2 4e-11
gi|90423934|ref|YP_532304.1| hypothetical protein RPC_2434 [Rhod... 38.5 0.29
gi|115524558|ref|YP_781469.1| hypothetical protein RPE_2551 [Rho... 37.0 0.94
gi|15609895|ref|NP_217274.1| hypothetical protein Rv2758c [Mycob... 37.0 0.95
gi|302544583|ref|ZP_07296925.1| hypothetical protein SSOG_05008 ... 35.0 3.2
gi|297199893|ref|ZP_06917290.1| conserved hypothetical protein [... 35.0 3.3
gi|217979807|ref|YP_002363954.1| hypothetical protein Msil_3709 ... 35.0 3.4
gi|167968585|ref|ZP_02550862.1| hypothetical protein MtubH3_1132... 35.0 3.5
>gi|254232666|ref|ZP_04925993.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|254366750|ref|ZP_04982793.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|254551595|ref|ZP_05142042.1| hypothetical protein Mtube_14242 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
9 more sequence titles
Length=101
Score = 181 bits (458), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 92/92 (100%), Positives = 92/92 (100%), Gaps = 0/92 (0%)
Query 1 VSTTIVAGVIQGHLPVILPTRRRARDLGHTTALFRAQTLQCIYLSIEYLYVCSMSRRTTI 60
VSTTIVAGVIQGHLPVILPTRRRARDLGHTTALFRAQTLQCIYLSIEYLYVCSMSRRTTI
Sbjct 10 VSTTIVAGVIQGHLPVILPTRRRARDLGHTTALFRAQTLQCIYLSIEYLYVCSMSRRTTI 69
Query 61 DIDDILLARAQAALGTTGLKDRVDAALRAAVR 92
DIDDILLARAQAALGTTGLKDRVDAALRAAVR
Sbjct 70 DIDDILLARAQAALGTTGLKDRVDAALRAAVR 101
>gi|15609682|ref|NP_217061.1| hypothetical protein Rv2545 [Mycobacterium tuberculosis H37Rv]
gi|15842081|ref|NP_337118.1| hypothetical protein MT2621 [Mycobacterium tuberculosis CDC1551]
gi|31793728|ref|NP_856221.1| hypothetical protein Mb2575 [Mycobacterium bovis AF2122/97]
42 more sequence titles
Length=92
Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 91/92 (99%), Positives = 92/92 (100%), Gaps = 0/92 (0%)
Query 1 VSTTIVAGVIQGHLPVILPTRRRARDLGHTTALFRAQTLQCIYLSIEYLYVCSMSRRTTI 60
+STTIVAGVIQGHLPVILPTRRRARDLGHTTALFRAQTLQCIYLSIEYLYVCSMSRRTTI
Sbjct 1 MSTTIVAGVIQGHLPVILPTRRRARDLGHTTALFRAQTLQCIYLSIEYLYVCSMSRRTTI 60
Query 61 DIDDILLARAQAALGTTGLKDRVDAALRAAVR 92
DIDDILLARAQAALGTTGLKDRVDAALRAAVR
Sbjct 61 DIDDILLARAQAALGTTGLKDRVDAALRAAVR 92
>gi|313659481|ref|ZP_07816361.1| antitoxin [Mycobacterium tuberculosis KZN V2475]
Length=101
Score = 176 bits (447), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 91/92 (99%), Positives = 91/92 (99%), Gaps = 0/92 (0%)
Query 1 VSTTIVAGVIQGHLPVILPTRRRARDLGHTTALFRAQTLQCIYLSIEYLYVCSMSRRTTI 60
VSTTIVAGVIQGHLPVIL TRRRARDLGHTTALFRAQTLQCIYLSIEYLYVCSMSRRTTI
Sbjct 10 VSTTIVAGVIQGHLPVILLTRRRARDLGHTTALFRAQTLQCIYLSIEYLYVCSMSRRTTI 69
Query 61 DIDDILLARAQAALGTTGLKDRVDAALRAAVR 92
DIDDILLARAQAALGTTGLKDRVDAALRAAVR
Sbjct 70 DIDDILLARAQAALGTTGLKDRVDAALRAAVR 101
>gi|253798375|ref|YP_003031376.1| antitoxin [Mycobacterium tuberculosis KZN 1435]
gi|253319878|gb|ACT24481.1| antitoxin [Mycobacterium tuberculosis KZN 1435]
Length=92
Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/92 (98%), Positives = 91/92 (99%), Gaps = 0/92 (0%)
Query 1 VSTTIVAGVIQGHLPVILPTRRRARDLGHTTALFRAQTLQCIYLSIEYLYVCSMSRRTTI 60
+STTIVAGVIQGHLPVIL TRRRARDLGHTTALFRAQTLQCIYLSIEYLYVCSMSRRTTI
Sbjct 1 MSTTIVAGVIQGHLPVILLTRRRARDLGHTTALFRAQTLQCIYLSIEYLYVCSMSRRTTI 60
Query 61 DIDDILLARAQAALGTTGLKDRVDAALRAAVR 92
DIDDILLARAQAALGTTGLKDRVDAALRAAVR
Sbjct 61 DIDDILLARAQAALGTTGLKDRVDAALRAAVR 92
>gi|294994345|ref|ZP_06800036.1| hypothetical protein Mtub2_07473 [Mycobacterium tuberculosis
210]
Length=39
Score = 73.9 bits (180), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/39 (100%), Positives = 39/39 (100%), Gaps = 0/39 (0%)
Query 54 MSRRTTIDIDDILLARAQAALGTTGLKDRVDAALRAAVR 92
MSRRTTIDIDDILLARAQAALGTTGLKDRVDAALRAAVR
Sbjct 1 MSRRTTIDIDDILLARAQAALGTTGLKDRVDAALRAAVR 39
>gi|289746337|ref|ZP_06505715.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289686865|gb|EFD54353.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
Length=78
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/51 (71%), Positives = 42/51 (83%), Gaps = 1/51 (1%)
Query 1 VSTTIVAGVIQGHLPVILPTRRRARDLGHTTALF-RAQTLQCIYLSIEYLY 50
+STTIVAGVIQGHLPVILPTRRRARDLGHTTA F R ++ I +S Y++
Sbjct 1 MSTTIVAGVIQGHLPVILPTRRRARDLGHTTAFFGRKRSNAYISVSNTYMF 51
>gi|90423934|ref|YP_532304.1| hypothetical protein RPC_2434 [Rhodopseudomonas palustris BisB18]
gi|90105948|gb|ABD87985.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
Length=67
Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/36 (56%), Positives = 23/36 (64%), Gaps = 0/36 (0%)
Query 57 RTTIDIDDILLARAQAALGTTGLKDRVDAALRAAVR 92
RT IDIDD L+A AQ A G KD V+ ALR +R
Sbjct 2 RTNIDIDDTLMAEAQEAAGKATKKDTVEQALRLMIR 37
>gi|115524558|ref|YP_781469.1| hypothetical protein RPE_2551 [Rhodopseudomonas palustris BisA53]
gi|115518505|gb|ABJ06489.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53]
Length=67
Score = 37.0 bits (84), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/36 (56%), Positives = 23/36 (64%), Gaps = 0/36 (0%)
Query 57 RTTIDIDDILLARAQAALGTTGLKDRVDAALRAAVR 92
RT I+IDD L+A AQ A G KD V+ ALR VR
Sbjct 2 RTNIEIDDTLMAEAQKAAGQATKKDTVEQALRLMVR 37
>gi|15609895|ref|NP_217274.1| hypothetical protein Rv2758c [Mycobacterium tuberculosis H37Rv]
gi|15842296|ref|NP_337333.1| hypothetical protein MT2828 [Mycobacterium tuberculosis CDC1551]
gi|31793932|ref|NP_856425.1| hypothetical protein Mb2779c [Mycobacterium bovis AF2122/97]
52 more sequence titles
Length=88
Score = 37.0 bits (84), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/36 (64%), Positives = 23/36 (64%), Gaps = 1/36 (2%)
Query 49 LYVCSMS-RRTTIDIDDILLARAQAALGTTGLKDRV 83
L VCS RT IDIDD LLARA LGTT KD V
Sbjct 7 LVVCSPGVTRTMIDIDDDLLARAAKELGTTTKKDTV 42
>gi|302544583|ref|ZP_07296925.1| hypothetical protein SSOG_05008 [Streptomyces hygroscopicus ATCC
53653]
gi|302462201|gb|EFL25294.1| hypothetical protein SSOG_05008 [Streptomyces himastatinicus
ATCC 53653]
Length=106
Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/36 (59%), Positives = 24/36 (67%), Gaps = 0/36 (0%)
Query 57 RTTIDIDDILLARAQAALGTTGLKDRVDAALRAAVR 92
RT ID+DD LLA AQ ALGTT V+AAL V+
Sbjct 35 RTVIDLDDDLLAEAQTALGTTTKVGTVNAALLEVVK 70
>gi|297199893|ref|ZP_06917290.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
gi|197710358|gb|EDY54392.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
Length=69
Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/36 (56%), Positives = 23/36 (64%), Gaps = 0/36 (0%)
Query 57 RTTIDIDDILLARAQAALGTTGLKDRVDAALRAAVR 92
+T IDID+ LLA A A GT KD V+AALR V
Sbjct 3 KTLIDIDEQLLAEAAIAFGTRTKKDTVNAALREGVE 38
>gi|217979807|ref|YP_002363954.1| hypothetical protein Msil_3709 [Methylocella silvestris BL2]
gi|217505183|gb|ACK52592.1| conserved hypothetical protein [Methylocella silvestris BL2]
Length=70
Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/36 (59%), Positives = 24/36 (67%), Gaps = 0/36 (0%)
Query 57 RTTIDIDDILLARAQAALGTTGLKDRVDAALRAAVR 92
RT I+IDD LLA A AA G + K V+ ALRA VR
Sbjct 2 RTNIEIDDELLAEAMAATGLSTKKATVEEALRALVR 37
>gi|167968585|ref|ZP_02550862.1| hypothetical protein MtubH3_11328 [Mycobacterium tuberculosis
H37Ra]
gi|254551817|ref|ZP_05142264.1| antitoxin [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
gi|294994148|ref|ZP_06799839.1| antitoxin [Mycobacterium tuberculosis 210]
20 more sequence titles
Length=75
Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/27 (71%), Positives = 19/27 (71%), Gaps = 0/27 (0%)
Query 57 RTTIDIDDILLARAQAALGTTGLKDRV 83
RT IDIDD LLARA LGTT KD V
Sbjct 3 RTMIDIDDDLLARAAKELGTTTKKDTV 29
Lambda K H
0.328 0.138 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128268350160
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40