BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2545

Length=92
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|254232666|ref|ZP_04925993.1|  conserved hypothetical protein [...   181    4e-44
gi|15609682|ref|NP_217061.1|  hypothetical protein Rv2545 [Mycoba...   179    1e-43
gi|313659481|ref|ZP_07816361.1|  antitoxin [Mycobacterium tubercu...   176    8e-43
gi|253798375|ref|YP_003031376.1|  antitoxin [Mycobacterium tuberc...   176    1e-42
gi|294994345|ref|ZP_06800036.1|  hypothetical protein Mtub2_07473...  73.9    8e-12
gi|289746337|ref|ZP_06505715.1|  conserved hypothetical protein [...  71.2    4e-11
gi|90423934|ref|YP_532304.1|  hypothetical protein RPC_2434 [Rhod...  38.5    0.29 
gi|115524558|ref|YP_781469.1|  hypothetical protein RPE_2551 [Rho...  37.0    0.94 
gi|15609895|ref|NP_217274.1|  hypothetical protein Rv2758c [Mycob...  37.0    0.95 
gi|302544583|ref|ZP_07296925.1|  hypothetical protein SSOG_05008 ...  35.0    3.2  
gi|297199893|ref|ZP_06917290.1|  conserved hypothetical protein [...  35.0    3.3  
gi|217979807|ref|YP_002363954.1|  hypothetical protein Msil_3709 ...  35.0    3.4  
gi|167968585|ref|ZP_02550862.1|  hypothetical protein MtubH3_1132...  35.0    3.5  


>gi|254232666|ref|ZP_04925993.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|254366750|ref|ZP_04982793.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|254551595|ref|ZP_05142042.1| hypothetical protein Mtube_14242 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 9 more sequence titles
 Length=101

 Score =  181 bits (458),  Expect = 4e-44, Method: Compositional matrix adjust.
 Identities = 92/92 (100%), Positives = 92/92 (100%), Gaps = 0/92 (0%)

Query  1    VSTTIVAGVIQGHLPVILPTRRRARDLGHTTALFRAQTLQCIYLSIEYLYVCSMSRRTTI  60
            VSTTIVAGVIQGHLPVILPTRRRARDLGHTTALFRAQTLQCIYLSIEYLYVCSMSRRTTI
Sbjct  10   VSTTIVAGVIQGHLPVILPTRRRARDLGHTTALFRAQTLQCIYLSIEYLYVCSMSRRTTI  69

Query  61   DIDDILLARAQAALGTTGLKDRVDAALRAAVR  92
            DIDDILLARAQAALGTTGLKDRVDAALRAAVR
Sbjct  70   DIDDILLARAQAALGTTGLKDRVDAALRAAVR  101


>gi|15609682|ref|NP_217061.1| hypothetical protein Rv2545 [Mycobacterium tuberculosis H37Rv]
 gi|15842081|ref|NP_337118.1| hypothetical protein MT2621 [Mycobacterium tuberculosis CDC1551]
 gi|31793728|ref|NP_856221.1| hypothetical protein Mb2575 [Mycobacterium bovis AF2122/97]
 42 more sequence titles
 Length=92

 Score =  179 bits (455),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 91/92 (99%), Positives = 92/92 (100%), Gaps = 0/92 (0%)

Query  1   VSTTIVAGVIQGHLPVILPTRRRARDLGHTTALFRAQTLQCIYLSIEYLYVCSMSRRTTI  60
           +STTIVAGVIQGHLPVILPTRRRARDLGHTTALFRAQTLQCIYLSIEYLYVCSMSRRTTI
Sbjct  1   MSTTIVAGVIQGHLPVILPTRRRARDLGHTTALFRAQTLQCIYLSIEYLYVCSMSRRTTI  60

Query  61  DIDDILLARAQAALGTTGLKDRVDAALRAAVR  92
           DIDDILLARAQAALGTTGLKDRVDAALRAAVR
Sbjct  61  DIDDILLARAQAALGTTGLKDRVDAALRAAVR  92


>gi|313659481|ref|ZP_07816361.1| antitoxin [Mycobacterium tuberculosis KZN V2475]
Length=101

 Score =  176 bits (447),  Expect = 8e-43, Method: Compositional matrix adjust.
 Identities = 91/92 (99%), Positives = 91/92 (99%), Gaps = 0/92 (0%)

Query  1    VSTTIVAGVIQGHLPVILPTRRRARDLGHTTALFRAQTLQCIYLSIEYLYVCSMSRRTTI  60
            VSTTIVAGVIQGHLPVIL TRRRARDLGHTTALFRAQTLQCIYLSIEYLYVCSMSRRTTI
Sbjct  10   VSTTIVAGVIQGHLPVILLTRRRARDLGHTTALFRAQTLQCIYLSIEYLYVCSMSRRTTI  69

Query  61   DIDDILLARAQAALGTTGLKDRVDAALRAAVR  92
            DIDDILLARAQAALGTTGLKDRVDAALRAAVR
Sbjct  70   DIDDILLARAQAALGTTGLKDRVDAALRAAVR  101


>gi|253798375|ref|YP_003031376.1| antitoxin [Mycobacterium tuberculosis KZN 1435]
 gi|253319878|gb|ACT24481.1| antitoxin [Mycobacterium tuberculosis KZN 1435]
Length=92

 Score =  176 bits (445),  Expect = 1e-42, Method: Compositional matrix adjust.
 Identities = 90/92 (98%), Positives = 91/92 (99%), Gaps = 0/92 (0%)

Query  1   VSTTIVAGVIQGHLPVILPTRRRARDLGHTTALFRAQTLQCIYLSIEYLYVCSMSRRTTI  60
           +STTIVAGVIQGHLPVIL TRRRARDLGHTTALFRAQTLQCIYLSIEYLYVCSMSRRTTI
Sbjct  1   MSTTIVAGVIQGHLPVILLTRRRARDLGHTTALFRAQTLQCIYLSIEYLYVCSMSRRTTI  60

Query  61  DIDDILLARAQAALGTTGLKDRVDAALRAAVR  92
           DIDDILLARAQAALGTTGLKDRVDAALRAAVR
Sbjct  61  DIDDILLARAQAALGTTGLKDRVDAALRAAVR  92


>gi|294994345|ref|ZP_06800036.1| hypothetical protein Mtub2_07473 [Mycobacterium tuberculosis 
210]
Length=39

 Score = 73.9 bits (180),  Expect = 8e-12, Method: Compositional matrix adjust.
 Identities = 39/39 (100%), Positives = 39/39 (100%), Gaps = 0/39 (0%)

Query  54  MSRRTTIDIDDILLARAQAALGTTGLKDRVDAALRAAVR  92
           MSRRTTIDIDDILLARAQAALGTTGLKDRVDAALRAAVR
Sbjct  1   MSRRTTIDIDDILLARAQAALGTTGLKDRVDAALRAAVR  39


>gi|289746337|ref|ZP_06505715.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289686865|gb|EFD54353.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
Length=78

 Score = 71.2 bits (173),  Expect = 4e-11, Method: Compositional matrix adjust.
 Identities = 36/51 (71%), Positives = 42/51 (83%), Gaps = 1/51 (1%)

Query  1   VSTTIVAGVIQGHLPVILPTRRRARDLGHTTALF-RAQTLQCIYLSIEYLY  50
           +STTIVAGVIQGHLPVILPTRRRARDLGHTTA F R ++   I +S  Y++
Sbjct  1   MSTTIVAGVIQGHLPVILPTRRRARDLGHTTAFFGRKRSNAYISVSNTYMF  51


>gi|90423934|ref|YP_532304.1| hypothetical protein RPC_2434 [Rhodopseudomonas palustris BisB18]
 gi|90105948|gb|ABD87985.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
Length=67

 Score = 38.5 bits (88),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 20/36 (56%), Positives = 23/36 (64%), Gaps = 0/36 (0%)

Query  57  RTTIDIDDILLARAQAALGTTGLKDRVDAALRAAVR  92
           RT IDIDD L+A AQ A G    KD V+ ALR  +R
Sbjct  2   RTNIDIDDTLMAEAQEAAGKATKKDTVEQALRLMIR  37


>gi|115524558|ref|YP_781469.1| hypothetical protein RPE_2551 [Rhodopseudomonas palustris BisA53]
 gi|115518505|gb|ABJ06489.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53]
Length=67

 Score = 37.0 bits (84),  Expect = 0.94, Method: Compositional matrix adjust.
 Identities = 20/36 (56%), Positives = 23/36 (64%), Gaps = 0/36 (0%)

Query  57  RTTIDIDDILLARAQAALGTTGLKDRVDAALRAAVR  92
           RT I+IDD L+A AQ A G    KD V+ ALR  VR
Sbjct  2   RTNIEIDDTLMAEAQKAAGQATKKDTVEQALRLMVR  37


>gi|15609895|ref|NP_217274.1| hypothetical protein Rv2758c [Mycobacterium tuberculosis H37Rv]
 gi|15842296|ref|NP_337333.1| hypothetical protein MT2828 [Mycobacterium tuberculosis CDC1551]
 gi|31793932|ref|NP_856425.1| hypothetical protein Mb2779c [Mycobacterium bovis AF2122/97]
 52 more sequence titles
 Length=88

 Score = 37.0 bits (84),  Expect = 0.95, Method: Compositional matrix adjust.
 Identities = 23/36 (64%), Positives = 23/36 (64%), Gaps = 1/36 (2%)

Query  49  LYVCSMS-RRTTIDIDDILLARAQAALGTTGLKDRV  83
           L VCS    RT IDIDD LLARA   LGTT  KD V
Sbjct  7   LVVCSPGVTRTMIDIDDDLLARAAKELGTTTKKDTV  42


>gi|302544583|ref|ZP_07296925.1| hypothetical protein SSOG_05008 [Streptomyces hygroscopicus ATCC 
53653]
 gi|302462201|gb|EFL25294.1| hypothetical protein SSOG_05008 [Streptomyces himastatinicus 
ATCC 53653]
Length=106

 Score = 35.0 bits (79),  Expect = 3.2, Method: Compositional matrix adjust.
 Identities = 21/36 (59%), Positives = 24/36 (67%), Gaps = 0/36 (0%)

Query  57  RTTIDIDDILLARAQAALGTTGLKDRVDAALRAAVR  92
           RT ID+DD LLA AQ ALGTT     V+AAL   V+
Sbjct  35  RTVIDLDDDLLAEAQTALGTTTKVGTVNAALLEVVK  70


>gi|297199893|ref|ZP_06917290.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
 gi|197710358|gb|EDY54392.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
Length=69

 Score = 35.0 bits (79),  Expect = 3.3, Method: Compositional matrix adjust.
 Identities = 20/36 (56%), Positives = 23/36 (64%), Gaps = 0/36 (0%)

Query  57  RTTIDIDDILLARAQAALGTTGLKDRVDAALRAAVR  92
           +T IDID+ LLA A  A GT   KD V+AALR  V 
Sbjct  3   KTLIDIDEQLLAEAAIAFGTRTKKDTVNAALREGVE  38


>gi|217979807|ref|YP_002363954.1| hypothetical protein Msil_3709 [Methylocella silvestris BL2]
 gi|217505183|gb|ACK52592.1| conserved hypothetical protein [Methylocella silvestris BL2]
Length=70

 Score = 35.0 bits (79),  Expect = 3.4, Method: Compositional matrix adjust.
 Identities = 21/36 (59%), Positives = 24/36 (67%), Gaps = 0/36 (0%)

Query  57  RTTIDIDDILLARAQAALGTTGLKDRVDAALRAAVR  92
           RT I+IDD LLA A AA G +  K  V+ ALRA VR
Sbjct  2   RTNIEIDDELLAEAMAATGLSTKKATVEEALRALVR  37


>gi|167968585|ref|ZP_02550862.1| hypothetical protein MtubH3_11328 [Mycobacterium tuberculosis 
H37Ra]
 gi|254551817|ref|ZP_05142264.1| antitoxin [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|294994148|ref|ZP_06799839.1| antitoxin [Mycobacterium tuberculosis 210]
 20 more sequence titles
 Length=75

 Score = 35.0 bits (79),  Expect = 3.5, Method: Compositional matrix adjust.
 Identities = 19/27 (71%), Positives = 19/27 (71%), Gaps = 0/27 (0%)

Query  57  RTTIDIDDILLARAQAALGTTGLKDRV  83
           RT IDIDD LLARA   LGTT  KD V
Sbjct  3   RTMIDIDDDLLARAAKELGTTTKKDTV  29



Lambda     K      H
   0.328    0.138    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128268350160


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40