BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2546
Length=137
Score E
Sequences producing significant alignments: (Bits) Value
gi|15842082|ref|NP_337119.1| hypothetical protein MT2622 [Mycoba... 278 2e-73
gi|15609683|ref|NP_217062.1| hypothetical protein Rv2546 [Mycoba... 278 2e-73
gi|306780585|ref|ZP_07418922.1| toxin [Mycobacterium tuberculosi... 277 5e-73
gi|167968845|ref|ZP_02551122.1| hypothetical protein MtubH3_1276... 274 3e-72
gi|339295424|gb|AEJ47535.1| hypothetical protein CCDC5079_2345 [... 226 7e-58
gi|302536099|ref|ZP_07288441.1| conserved hypothetical protein [... 93.6 8e-18
gi|297199892|ref|ZP_06917289.1| conserved hypothetical protein [... 93.2 1e-17
gi|297160784|gb|ADI10496.1| hypothetical protein SBI_07376 [Stre... 92.8 2e-17
gi|254388989|ref|ZP_05004220.1| conserved membrane protein [Stre... 92.0 2e-17
gi|297154824|gb|ADI04536.1| hypothetical protein SBI_01415 [Stre... 91.7 3e-17
gi|345013748|ref|YP_004816102.1| PilT protein domain-containing ... 90.5 8e-17
gi|284991226|ref|YP_003409780.1| PilT protein domain-containing ... 86.7 1e-15
gi|311897824|dbj|BAJ30232.1| hypothetical protein KSE_44490 [Kit... 86.3 2e-15
gi|254383838|ref|ZP_04999186.1| conserved hypothetical protein [... 85.9 2e-15
gi|302544584|ref|ZP_07296926.1| PIN family toxin-antitoxin syste... 85.1 3e-15
gi|290958509|ref|YP_003489691.1| hypothetical protein SCAB_40681... 84.0 6e-15
gi|167968774|ref|ZP_02551051.1| hypothetical protein MtubH3_1235... 83.2 1e-14
gi|291452355|ref|ZP_06591745.1| conserved hypothetical protein [... 82.8 1e-14
gi|289572808|ref|ZP_06453035.1| toxin [Mycobacterium tuberculosi... 82.4 2e-14
gi|15607370|ref|NP_214743.1| hypothetical protein Rv0229c [Mycob... 82.4 2e-14
gi|302534504|ref|ZP_07286846.1| predicted protein [Streptomyces ... 82.0 2e-14
gi|302557955|ref|ZP_07310297.1| PIN family toxin-antitoxin syste... 81.6 3e-14
gi|343479040|gb|AEM44209.1| hypothetical protein [uncultured bac... 81.6 4e-14
gi|289445761|ref|ZP_06435505.1| toxin [Mycobacterium tuberculosi... 80.9 6e-14
gi|297163315|gb|ADI13027.1| PilT protein domain protein [Strepto... 80.5 8e-14
gi|302546829|ref|ZP_07299171.1| PIN family toxin-antitoxin syste... 79.7 1e-13
gi|213649389|ref|ZP_03379442.1| hypothetical protein SentesTy_20... 78.6 3e-13
gi|302869194|ref|YP_003837831.1| PilT protein domain-containing ... 78.2 4e-13
gi|15609894|ref|NP_217273.1| hypothetical protein Rv2757c [Mycob... 77.8 5e-13
gi|315504329|ref|YP_004083216.1| pilt protein domain-containing ... 77.4 6e-13
gi|340627758|ref|YP_004746210.1| hypothetical protein MCAN_27841... 77.4 7e-13
gi|239988547|ref|ZP_04709211.1| hypothetical protein SrosN1_1465... 77.0 9e-13
gi|308378090|ref|ZP_07668665.1| putative type I restriction-modi... 75.9 2e-12
gi|289748705|ref|ZP_06508083.1| LOW QUALITY PROTEIN: conserved m... 75.9 2e-12
gi|284045212|ref|YP_003395552.1| PilT protein domain protein [Co... 75.1 3e-12
gi|302559325|ref|ZP_07311667.1| PIN family toxin-antitoxin syste... 74.3 5e-12
gi|269124363|ref|YP_003297733.1| PilT protein domain-containing ... 69.7 1e-10
gi|158318849|ref|YP_001511357.1| PilT domain-containing protein ... 68.9 2e-10
gi|254549168|ref|ZP_05139615.1| hypothetical protein Mtube_01671... 64.3 5e-09
gi|340627542|ref|YP_004745994.1| hypothetical protein MCAN_25671... 63.9 8e-09
gi|15609664|ref|NP_217043.1| hypothetical protein Rv2527 [Mycoba... 62.8 2e-08
gi|167967328|ref|ZP_02549605.1| hypothetical protein MtubH3_0454... 62.8 2e-08
gi|333992736|ref|YP_004525350.1| hypothetical protein JDM601_409... 60.1 1e-07
gi|240172880|ref|ZP_04751539.1| hypothetical protein MkanA1_2644... 59.7 1e-07
gi|328882585|emb|CCA55824.1| hypothetical protein SVEN_2538 [Str... 59.7 2e-07
gi|284044239|ref|YP_003394579.1| PilT protein domain protein [Co... 58.5 3e-07
gi|229598010|pdb|3H87|A Chain A, Rv0301 Rv0300 Toxin Antitoxin C... 57.8 5e-07
gi|289748072|ref|ZP_06507450.1| conserved hypothetical protein [... 57.8 6e-07
gi|15607442|ref|NP_214815.1| hypothetical protein Rv0301 [Mycoba... 57.8 6e-07
gi|29832237|ref|NP_826871.1| hypothetical protein SAV_5694 [Stre... 57.0 9e-07
>gi|15842082|ref|NP_337119.1| hypothetical protein MT2622 [Mycobacterium tuberculosis CDC1551]
gi|254551596|ref|ZP_05142043.1| hypothetical protein Mtube_14247 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|289746329|ref|ZP_06505707.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
7 more sequence titles
Length=138
Score = 278 bits (711), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 137/137 (100%), Positives = 137/137 (100%), Gaps = 0/137 (0%)
Query 1 MVFCVDTSAWHHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALADELDG 60
MVFCVDTSAWHHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALADELDG
Sbjct 2 MVFCVDTSAWHHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALADELDG 61
Query 61 LARIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRV 120
LARIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRV
Sbjct 62 LARIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRV 121
Query 121 AAITGQPTEWIVPRGTL 137
AAITGQPTEWIVPRGTL
Sbjct 122 AAITGQPTEWIVPRGTL 138
>gi|15609683|ref|NP_217062.1| hypothetical protein Rv2546 [Mycobacterium tuberculosis H37Rv]
gi|31793729|ref|NP_856222.1| hypothetical protein Mb2576 [Mycobacterium bovis AF2122/97]
gi|121638431|ref|YP_978655.1| hypothetical protein BCG_2569 [Mycobacterium bovis BCG str. Pasteur
1173P2]
55 more sequence titles
Length=137
Score = 278 bits (711), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 137/137 (100%), Positives = 137/137 (100%), Gaps = 0/137 (0%)
Query 1 MVFCVDTSAWHHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALADELDG 60
MVFCVDTSAWHHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALADELDG
Sbjct 1 MVFCVDTSAWHHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALADELDG 60
Query 61 LARIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRV 120
LARIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRV
Sbjct 61 LARIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRV 120
Query 121 AAITGQPTEWIVPRGTL 137
AAITGQPTEWIVPRGTL
Sbjct 121 AAITGQPTEWIVPRGTL 137
>gi|306780585|ref|ZP_07418922.1| toxin [Mycobacterium tuberculosis SUMu002]
gi|306785348|ref|ZP_07423670.1| toxin [Mycobacterium tuberculosis SUMu003]
gi|306789947|ref|ZP_07428269.1| toxin [Mycobacterium tuberculosis SUMu004]
13 more sequence titles
Length=137
Score = 277 bits (708), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 136/137 (99%), Positives = 137/137 (100%), Gaps = 0/137 (0%)
Query 1 MVFCVDTSAWHHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALADELDG 60
MVFCVDTSAWHHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALADELDG
Sbjct 1 MVFCVDTSAWHHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALADELDG 60
Query 61 LARIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRV 120
LARIPVGA+TFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRV
Sbjct 61 LARIPVGAKTFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRV 120
Query 121 AAITGQPTEWIVPRGTL 137
AAITGQPTEWIVPRGTL
Sbjct 121 AAITGQPTEWIVPRGTL 137
>gi|167968845|ref|ZP_02551122.1| hypothetical protein MtubH3_12760 [Mycobacterium tuberculosis
H37Ra]
Length=136
Score = 274 bits (701), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 135/136 (99%), Positives = 136/136 (100%), Gaps = 0/136 (0%)
Query 2 VFCVDTSAWHHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALADELDGL 61
+FCVDTSAWHHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALADELDGL
Sbjct 1 MFCVDTSAWHHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALADELDGL 60
Query 62 ARIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRVA 121
ARIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRVA
Sbjct 61 ARIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRVA 120
Query 122 AITGQPTEWIVPRGTL 137
AITGQPTEWIVPRGTL
Sbjct 121 AITGQPTEWIVPRGTL 136
>gi|339295424|gb|AEJ47535.1| hypothetical protein CCDC5079_2345 [Mycobacterium tuberculosis
CCDC5079]
Length=112
Score = 226 bits (577), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 111/112 (99%), Positives = 112/112 (100%), Gaps = 0/112 (0%)
Query 26 LSADQIGICDHVRLEILYSANSATDYDALADELDGLARIPVGAETFTRACQVQRELAHVA 85
+SADQIGICDHVRLEILYSANSATDYDALADELDGLARIPVGAETFTRACQVQRELAHVA
Sbjct 1 MSADQIGICDHVRLEILYSANSATDYDALADELDGLARIPVGAETFTRACQVQRELAHVA 60
Query 86 GLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRVAAITGQPTEWIVPRGTL 137
GLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRVAAITGQPTEWIVPRGTL
Sbjct 61 GLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRVAAITGQPTEWIVPRGTL 112
>gi|302536099|ref|ZP_07288441.1| conserved hypothetical protein [Streptomyces sp. C]
gi|302444994|gb|EFL16810.1| conserved hypothetical protein [Streptomyces sp. C]
Length=138
Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 57/134 (43%), Positives = 75/134 (56%), Gaps = 2/134 (1%)
Query 3 FCVDTSAWHHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALADELDGLA 62
F +D SA +P V A +G+C V LE+LYSA S D D + L A
Sbjct 5 FLIDKSALARYPKPAVRAVIDPLHVAGVLGVCGAVELEVLYSARSKGDADRVRAGLGAFA 64
Query 63 RIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRVAA 122
+ E + RA VQ++L VAG + ++V + DLVIAA AE G V HYD +YD +A
Sbjct 65 WLSTPDEVWDRALDVQKQLI-VAG-NWKAVSLPDLVIAATAERHGATVLHYDGDYDMIAE 122
Query 123 ITGQPTEWIVPRGT 136
+TGQP W+VPRGT
Sbjct 123 VTGQPMRWVVPRGT 136
>gi|297199892|ref|ZP_06917289.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
gi|197710357|gb|EDY54391.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
Length=139
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/140 (40%), Positives = 74/140 (53%), Gaps = 11/140 (7%)
Query 3 FCVDTSAW----HHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALADEL 58
+ +DTSA H ARP RW L I C +E LYSA +A D L +L
Sbjct 6 YLIDTSALVRILKHPARP----RWEKPLEEGLISRCPMTEVEFLYSARNAEDRSELVQDL 61
Query 59 DGL-ARIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENY 117
D L P+ +RA VQREL HRS DL++AA AEL G + HYD ++
Sbjct 62 DALFGWTPLDDRAVSRAWDVQRELTEKG--QHRSAGAVDLLVAATAELQGLTMLHYDNDF 119
Query 118 DRVAAITGQPTEWIVPRGTL 137
+ +A++TGQPT+W+ G+L
Sbjct 120 ETIASVTGQPTQWLAAPGSL 139
>gi|297160784|gb|ADI10496.1| hypothetical protein SBI_07376 [Streptomyces bingchenggensis
BCW-1]
Length=138
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 81/135 (60%), Gaps = 4/135 (2%)
Query 3 FCVDTSAWHHAARPEVARRWLAAL-SADQIGICDHVRLEILYSANSATDYDALADELDGL 61
+ +D SA +P AR + L +A + +C V LE+L+SA S D + + DE+ G
Sbjct 5 YLIDKSALARYPKP-AARAVIEPLHNAGLLAVCGAVELEVLHSARSKGDAERIRDEMRGF 63
Query 62 ARIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRVA 121
+P E + RA +VQ +L +A + +++ ++DLVIAA AE IV HYD +YD +A
Sbjct 64 DWLPTPDEAWDRALEVQTQL--IAAGNWKALSVSDLVIAATAERHSVIVLHYDGDYDMIA 121
Query 122 AITGQPTEWIVPRGT 136
A+TGQ T W+VP GT
Sbjct 122 AVTGQSTRWVVPSGT 136
>gi|254388989|ref|ZP_05004220.1| conserved membrane protein [Streptomyces clavuligerus ATCC 27064]
gi|294814925|ref|ZP_06773568.1| toxin [Streptomyces clavuligerus ATCC 27064]
gi|326443296|ref|ZP_08218030.1| PilT protein domain-containing protein [Streptomyces clavuligerus
ATCC 27064]
gi|197702707|gb|EDY48519.1| conserved membrane protein [Streptomyces clavuligerus ATCC 27064]
gi|294327524|gb|EFG09167.1| toxin [Streptomyces clavuligerus ATCC 27064]
Length=139
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/134 (39%), Positives = 71/134 (53%), Gaps = 2/134 (1%)
Query 3 FCVDTSAWHHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALADELDGLA 62
+ VD S W A +P V L +G + LE+L+SA +A DY+ +
Sbjct 6 YLVDMSVWARAGKPGVRAALEPKLLRGLVGTSGIIDLELLFSARNADDYERMLGRRQAFE 65
Query 63 RIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRVAA 122
P E RA +VQ A +HR++ I DL++AA AE G + HYD ++D +A
Sbjct 66 WFPTTDEIVARAIEVQGFCARKG--NHRALSIPDLLVAATAERHGLTLLHYDGDFDLIAE 123
Query 123 ITGQPTEWIVPRGT 136
+TGQ TEWIVPRGT
Sbjct 124 VTGQLTEWIVPRGT 137
>gi|297154824|gb|ADI04536.1| hypothetical protein SBI_01415 [Streptomyces bingchenggensis
BCW-1]
Length=139
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/135 (41%), Positives = 79/135 (59%), Gaps = 4/135 (2%)
Query 3 FCVDTSAWHHAARPEVARRWLAALSADQI-GICDHVRLEILYSANSATDYDALADELDGL 61
F +D SA +P+VA L L D + +C V +E++YSA + D L L G
Sbjct 5 FLIDNSALQRWRKPKVAEV-LDPLHEDGVLAVCGPVEIEVMYSARNENDAKRLHWFLAGF 63
Query 62 ARIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRVA 121
+P+ E + RA VQR+ +A +HR++ + DL+IAAAAE V HYD++YD +A
Sbjct 64 DYLPMTDEVWDRAKDVQRQA--IAKGNHRALSMPDLLIAAAAERHVVTVLHYDQDYDMIA 121
Query 122 AITGQPTEWIVPRGT 136
AITGQP +W+V GT
Sbjct 122 AITGQPMKWVVEAGT 136
>gi|345013748|ref|YP_004816102.1| PilT protein domain-containing protein [Streptomyces violaceusniger
Tu 4113]
gi|344040097|gb|AEM85822.1| PilT protein domain protein [Streptomyces violaceusniger Tu 4113]
Length=139
Score = 90.5 bits (223), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/135 (39%), Positives = 77/135 (58%), Gaps = 4/135 (2%)
Query 3 FCVDTSAWHHAARPEVARRWLAALSADQI-GICDHVRLEILYSANSATDYDALADELDGL 61
F +D SA +P+VA L L D + +C V +E++YSA + D L L G
Sbjct 5 FLIDNSALQRWRKPKVAEV-LDPLHEDGVLAVCGPVEMEVMYSARNDNDAKRLHWFLSGF 63
Query 62 ARIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRVA 121
+P+ E + RA +QR+ + +HR++ + DL+IAAAAE V HYD++YD +A
Sbjct 64 DYLPMPDEVWDRAKDIQRQA--ITKGNHRALSMPDLLIAAAAERHAVTVLHYDQDYDMIA 121
Query 122 AITGQPTEWIVPRGT 136
AITGQP +W+ GT
Sbjct 122 AITGQPMKWVTEAGT 136
>gi|284991226|ref|YP_003409780.1| PilT protein domain-containing protein [Geodermatophilus obscurus
DSM 43160]
gi|284064471|gb|ADB75409.1| PilT protein domain protein [Geodermatophilus obscurus DSM 43160]
Length=141
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/136 (42%), Positives = 75/136 (56%), Gaps = 3/136 (2%)
Query 3 FCVDTSAWHHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDY-DALADELDGL 61
+ +DTSA P+VA R + LSA + C + LE LYSA S +Y + AD
Sbjct 7 YLLDTSAAARVPAPQVADRVVPLLSAGLLATCAALDLEALYSARSPREYREVRADRRLAY 66
Query 62 ARIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRVA 121
+P + RA QVQ LA R V +ADLVI+A AE V HYD ++D VA
Sbjct 67 EYLPTEDGDWQRALQVQAALADAG--RWRGVGLADLVISAVAERHRVTVLHYDGDFDGVA 124
Query 122 AITGQPTEWIVPRGTL 137
A+TGQ TEW+VP G++
Sbjct 125 AVTGQRTEWVVPAGSV 140
>gi|311897824|dbj|BAJ30232.1| hypothetical protein KSE_44490 [Kitasatospora setae KM-6054]
Length=139
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/135 (43%), Positives = 77/135 (58%), Gaps = 4/135 (2%)
Query 3 FCVDTSAWHHAARPEVARRWLAALSADQI-GICDHVRLEILYSANSATDYDALADELDGL 61
F +D SA +P V R L LS + I V +E+LYSA + + + L L G
Sbjct 6 FLIDKSALARWGKPAV-RPVLDDLSQRALLAISPTVEMEVLYSARTLAEAERLRHLLRGF 64
Query 62 ARIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRVA 121
+ E + RA QVQ++ A G +HR++ +ADL+IAA AE G V HYD +YD +A
Sbjct 65 DYLSCPDEVWDRAKQVQQQ-ALFRG-NHRALSMADLLIAATAERHGVTVLHYDGDYDMIA 122
Query 122 AITGQPTEWIVPRGT 136
AITGQP W+VP GT
Sbjct 123 AITGQPARWVVPAGT 137
>gi|254383838|ref|ZP_04999186.1| conserved hypothetical protein [Streptomyces sp. Mg1]
gi|194342731|gb|EDX23697.1| conserved hypothetical protein [Streptomyces sp. Mg1]
Length=138
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/133 (37%), Positives = 72/133 (55%), Gaps = 2/133 (1%)
Query 3 FCVDTSAWHHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALADELDGLA 62
F +D SA +P V +A + +C V LE++YSA S D + + +
Sbjct 5 FLIDKSALARYPKPAVHAVIDPLHNAGLLAVCGAVELEVMYSARSKADARRVREGMAAFD 64
Query 63 RIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRVAA 122
+P E + RA +VQ L + + ++V + DL+IAA AE G V HYD +YD +AA
Sbjct 65 WLPTPDEAWDRALEVQDAL--IGEGNWKAVSLPDLIIAATAERHGATVLHYDGDYDMIAA 122
Query 123 ITGQPTEWIVPRG 135
+TGQP W+VPRG
Sbjct 123 VTGQPMRWVVPRG 135
>gi|302544584|ref|ZP_07296926.1| PIN family toxin-antitoxin system, toxin component [Streptomyces
hygroscopicus ATCC 53653]
gi|302462202|gb|EFL25295.1| PIN family toxin-antitoxin system, toxin component [Streptomyces
himastatinicus ATCC 53653]
Length=138
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/134 (38%), Positives = 73/134 (55%), Gaps = 2/134 (1%)
Query 3 FCVDTSAWHHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALADELDGLA 62
+ +D SA +ARP V + + V +EILYSA +A + D L L G
Sbjct 5 YLIDKSALARSARPAVRETLNPLHERGLLCVTGAVEVEILYSARNANEADRLGRWLTGFD 64
Query 63 RIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRVAA 122
+P E + A +QR+ +A +HR+ +ADL+IAA A+ G V HYD +YD++AA
Sbjct 65 YLPCPDEVWDAALDIQRQA--IAKGNHRAFSMADLLIAATAQRHGATVLHYDGDYDQIAA 122
Query 123 ITGQPTEWIVPRGT 136
ITG P+ W+ GT
Sbjct 123 ITGYPSRWVAEPGT 136
>gi|290958509|ref|YP_003489691.1| hypothetical protein SCAB_40681 [Streptomyces scabiei 87.22]
gi|260648035|emb|CBG71143.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length=139
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/134 (35%), Positives = 75/134 (56%), Gaps = 2/134 (1%)
Query 3 FCVDTSAWHHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALADELDGLA 62
+ +D SA +P V + +C E+++SA +++ ++ L
Sbjct 5 YLIDKSALARWTKPSVKEVLKPLHERYLLAVCQPTEFEMIHSARDSSEATRISTWLHAFD 64
Query 63 RIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRVAA 122
+ +TFTRA ++QR A AG H R++ + DL+IAA AEL+ V HYD ++D +A+
Sbjct 65 YLRTDDDTFTRALEIQRH-ALNAGFH-RALSLPDLLIAATAELNRRTVLHYDGDFDMIAS 122
Query 123 ITGQPTEWIVPRGT 136
+TGQPTEW+VP G+
Sbjct 123 LTGQPTEWVVPPGS 136
>gi|167968774|ref|ZP_02551051.1| hypothetical protein MtubH3_12355 [Mycobacterium tuberculosis
H37Ra]
gi|253797151|ref|YP_003030152.1| toxin [Mycobacterium tuberculosis KZN 1435]
gi|308231499|ref|ZP_07412656.2| toxin [Mycobacterium tuberculosis SUMu001]
27 more sequence titles
Length=137
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/137 (38%), Positives = 70/137 (52%), Gaps = 3/137 (2%)
Query 1 MVFCVDTSAWHHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALADELDG 60
+ + +DTS +RP V R A + LE+ YSA + T++ L L
Sbjct 3 LKYLLDTSVIKRLSRPAVRRAVEPLAEAGAVARTQITDLEVGYSARNETEWQRLMVALSA 62
Query 61 LARIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRV 120
I A RA +QR LA R KI DL+IAAA E G +V HYD ++D +
Sbjct 63 FDLIESTASHHRRALGIQRLLA---ARSQRGRKIPDLLIAAAGEEHGLVVLHYDADFDLI 119
Query 121 AAITGQPTEWIVPRGTL 137
AA+TGQP +WIVP GT+
Sbjct 120 AAVTGQPCQWIVPAGTI 136
>gi|291452355|ref|ZP_06591745.1| conserved hypothetical protein [Streptomyces albus J1074]
gi|291355304|gb|EFE82206.1| conserved hypothetical protein [Streptomyces albus J1074]
Length=135
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/129 (38%), Positives = 66/129 (52%), Gaps = 2/129 (1%)
Query 3 FCVDTSAWHHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALADELDGLA 62
+ +DTSA + V R W + A + +CD LE+LYSA S +D DA+ D L
Sbjct 6 YLIDTSALVRVLQRRVPREWEHRIGAGLVSLCDLTELELLYSARSTSDRDAIRDRLSLFT 65
Query 63 RIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRVAA 122
P+ F RA VQ L HRS DL++AA AE SG + H+D +++ VA
Sbjct 66 WCPMPDGVFRRARTVQALLTDKG--EHRSAGAVDLLLAATAEQSGLTLLHHDRDFETVAR 123
Query 123 ITGQPTEWI 131
TGQP I
Sbjct 124 ATGQPVRMI 132
>gi|289572808|ref|ZP_06453035.1| toxin [Mycobacterium tuberculosis K85]
gi|289537239|gb|EFD41817.1| toxin [Mycobacterium tuberculosis K85]
Length=547
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/137 (38%), Positives = 71/137 (52%), Gaps = 3/137 (2%)
Query 1 MVFCVDTSAWHHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALADELDG 60
+ + +DTS +RP V R A + LE+ YSA + T++ L L
Sbjct 413 LKYLLDTSVIKRLSRPAVRRAVEPLAEAGAVARTQITDLEVGYSARNETEWQRLMVALSA 472
Query 61 LARIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRV 120
I A RA +QR LA + R KI DL+IAAA E G +V HYD ++D +
Sbjct 473 FDLIESTASHHRRALGIQRLLAARS---QRGRKIPDLLIAAAGEEHGLVVLHYDADFDLI 529
Query 121 AAITGQPTEWIVPRGTL 137
AA+TGQP +WIVP GT+
Sbjct 530 AAVTGQPCQWIVPAGTI 546
>gi|15607370|ref|NP_214743.1| hypothetical protein Rv0229c [Mycobacterium tuberculosis H37Rv]
gi|15839609|ref|NP_334646.1| hypothetical protein MT0239 [Mycobacterium tuberculosis CDC1551]
gi|31791406|ref|NP_853899.1| hypothetical protein Mb0234c [Mycobacterium bovis AF2122/97]
42 more sequence titles
Length=226
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/137 (38%), Positives = 70/137 (52%), Gaps = 3/137 (2%)
Query 1 MVFCVDTSAWHHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALADELDG 60
+ + +DTS +RP V R A + LE+ YSA + T++ L L
Sbjct 92 LKYLLDTSVIKRLSRPAVRRAVEPLAEAGAVARTQITDLEVGYSARNETEWQRLMVALSA 151
Query 61 LARIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRV 120
I A RA +QR LA R KI DL+IAAA E G +V HYD ++D +
Sbjct 152 FDLIESTASHHRRALGIQRLLA---ARSQRGRKIPDLLIAAAGEEHGLVVLHYDADFDLI 208
Query 121 AAITGQPTEWIVPRGTL 137
AA+TGQP +WIVP GT+
Sbjct 209 AAVTGQPCQWIVPAGTI 225
>gi|302534504|ref|ZP_07286846.1| predicted protein [Streptomyces sp. C]
gi|302443399|gb|EFL15215.1| predicted protein [Streptomyces sp. C]
Length=140
Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/139 (40%), Positives = 73/139 (53%), Gaps = 8/139 (5%)
Query 1 MVFCVDTSAWHHAARPEVARR-WLAALSADQIGICDHVRLEILYSANSATD---YDALAD 56
+ + +DTSA E R+ W L+ IGIC+ LEIL+SA S D +AL
Sbjct 4 VTYLIDTSAVVRVLTNEDVRKAWRDHLAEGVIGICEVTELEILFSAKSLADRLEKEALLG 63
Query 57 ELDGLARIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDEN 116
EL PV + RA VQR L HRS DL++AA AEL+G + HYD++
Sbjct 64 EL--FNWTPVPESVYVRARAVQRLLTGRG--EHRSAGPVDLLVAATAELTGLTLLHYDKD 119
Query 117 YDRVAAITGQPTEWIVPRG 135
+D +A TGQPT W+ G
Sbjct 120 FDAIARATGQPTRWVARPG 138
>gi|302557955|ref|ZP_07310297.1| PIN family toxin-antitoxin system, toxin component [Streptomyces
griseoflavus Tu4000]
gi|302475573|gb|EFL38666.1| PIN family toxin-antitoxin system, toxin component [Streptomyces
griseoflavus Tu4000]
Length=136
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/136 (37%), Positives = 72/136 (53%), Gaps = 2/136 (1%)
Query 1 MVFCVDTSAWHHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALADELDG 60
M + +D SA A+P V + + + V +EILYSA + + L L G
Sbjct 1 MRYLIDKSALARRAKPAVRGVLDPLIQRGLLAVTGAVEMEILYSARNPAEAGKLRYWLAG 60
Query 61 LARIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRV 120
+P E + RA VQ + +HR++ +ADL+IAA AE G V HYDE+Y+++
Sbjct 61 FDYLPCPDECWDRAKDVQAQATRTG--NHRALSMADLLIAATAERHGVRVLHYDEDYEQI 118
Query 121 AAITGQPTEWIVPRGT 136
A +TGQ EW+ P GT
Sbjct 119 AELTGQAHEWVAPAGT 134
>gi|343479040|gb|AEM44209.1| hypothetical protein [uncultured bacterium]
Length=139
Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/134 (34%), Positives = 73/134 (55%), Gaps = 2/134 (1%)
Query 3 FCVDTSAWHHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALADELDGLA 62
+ +D SA +P V + +C E+++SA ++ ++ L
Sbjct 5 YLIDKSALARWTKPSVKEVLKPLHERYLLAVCQPTEFEMIHSARDGSEATRISTWLHAFD 64
Query 63 RIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRVAA 122
+ +TF RA ++QR A AG H R++ + DL+IAA AEL+ V HYD ++D +A+
Sbjct 65 YLRTDDDTFIRALEIQRH-ALNAGFH-RALSLPDLLIAATAELNRRTVLHYDGDFDMIAS 122
Query 123 ITGQPTEWIVPRGT 136
+TGQPTEW+VP G+
Sbjct 123 LTGQPTEWVVPPGS 136
>gi|289445761|ref|ZP_06435505.1| toxin [Mycobacterium tuberculosis CPHL_A]
gi|289418719|gb|EFD15920.1| toxin [Mycobacterium tuberculosis CPHL_A]
Length=226
Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/137 (38%), Positives = 69/137 (51%), Gaps = 3/137 (2%)
Query 1 MVFCVDTSAWHHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALADELDG 60
+ + +DTS +RP V R A + LE+ Y A + T++ L L
Sbjct 92 LKYLLDTSVIKRLSRPAVRRAVEPLAEAGAVARTQITDLEVGYPARNETEWQRLMVALSA 151
Query 61 LARIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRV 120
I A RA +QR LA R KI DL+IAAA E G +V HYD ++D +
Sbjct 152 FDLIESTASHHRRALGIQRLLA---ARSQRGRKIPDLLIAAAGEEHGLVVLHYDADFDLI 208
Query 121 AAITGQPTEWIVPRGTL 137
AA+TGQP +WIVP GT+
Sbjct 209 AAVTGQPCQWIVPAGTI 225
>gi|297163315|gb|ADI13027.1| PilT protein domain protein [Streptomyces bingchenggensis BCW-1]
Length=140
Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/137 (36%), Positives = 72/137 (53%), Gaps = 4/137 (2%)
Query 3 FCVDTSAWHHAAR-PEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALADEL-DG 60
F +DTSA + R P V R W L ++ +C+ LE++ + ++ L L D
Sbjct 5 FLIDTSACNRLFRTPAVERHWATVLDEGRVTVCEITELELVRATGGRGEWAVLERYLHDA 64
Query 61 LARIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRV 120
PV TRA VQ L VA H+ + DL+ AA AEL G + HYD +++ +
Sbjct 65 FGWPPVPDRALTRARHVQDLL--VATSWHQGPRAVDLMTAATAELCGLTLLHYDADFETI 122
Query 121 AAITGQPTEWIVPRGTL 137
A +TGQP +WI PRG++
Sbjct 123 AKVTGQPHQWIAPRGSV 139
>gi|302546829|ref|ZP_07299171.1| PIN family toxin-antitoxin system, toxin component [Streptomyces
hygroscopicus ATCC 53653]
gi|302464447|gb|EFL27540.1| PIN family toxin-antitoxin system, toxin component [Streptomyces
himastatinicus ATCC 53653]
Length=140
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/137 (36%), Positives = 71/137 (52%), Gaps = 4/137 (2%)
Query 3 FCVDTSAWHHAAR-PEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALADEL-DG 60
+ +DTSA + R P V R W L ++ +C+ LE++ + + L L D
Sbjct 5 YLIDTSACNRLFRSPAVERHWAGILDEGRVAVCEITELELVRATGGRDERAVLERYLHDA 64
Query 61 LARIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRV 120
PV TRA QVQ L VA H+ DL+ AA AEL G + HYD +++ +
Sbjct 65 FGWTPVPDRALTRARQVQDLL--VATSWHQGPGAVDLMTAATAELCGLTLLHYDADFETI 122
Query 121 AAITGQPTEWIVPRGTL 137
A +TGQP +WI PRG++
Sbjct 123 AKVTGQPHQWIAPRGSI 139
>gi|213649389|ref|ZP_03379442.1| hypothetical protein SentesTy_20112 [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
Length=36
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/36 (100%), Positives = 36/36 (100%), Gaps = 0/36 (0%)
Query 102 AAELSGTIVWHYDENYDRVAAITGQPTEWIVPRGTL 137
AAELSGTIVWHYDENYDRVAAITGQPTEWIVPRGTL
Sbjct 1 AAELSGTIVWHYDENYDRVAAITGQPTEWIVPRGTL 36
>gi|302869194|ref|YP_003837831.1| PilT protein domain-containing protein [Micromonospora aurantiaca
ATCC 27029]
gi|302572053|gb|ADL48255.1| PilT protein domain protein [Micromonospora aurantiaca ATCC 27029]
Length=139
Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/133 (35%), Positives = 71/133 (54%), Gaps = 2/133 (1%)
Query 3 FCVDTSAWHHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALADELDGLA 62
+ +D SA +P VA + +C + +E+++SA SA D L G
Sbjct 6 YLLDKSALARWPKPAVAPVLDELSDRGLLAVCGAIEIEVIHSARSAKDAKRARWLLRGFD 65
Query 63 RIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRVAA 122
+ + + + RA +Q + H +HR++ +ADL+IAA AE G V HYD ++D + A
Sbjct 66 WLAMPDDIWDRAIDIQVQTLHKG--NHRALSMADLLIAATAERHGVTVLHYDGDFDLITA 123
Query 123 ITGQPTEWIVPRG 135
ITGQPT W+VP G
Sbjct 124 ITGQPTTWVVPAG 136
>gi|15609894|ref|NP_217273.1| hypothetical protein Rv2757c [Mycobacterium tuberculosis H37Rv]
gi|15842295|ref|NP_337332.1| hypothetical protein MT2827 [Mycobacterium tuberculosis CDC1551]
gi|31793931|ref|NP_856424.1| hypothetical protein Mb2778c [Mycobacterium bovis AF2122/97]
77 more sequence titles
Length=138
Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/135 (38%), Positives = 68/135 (51%), Gaps = 3/135 (2%)
Query 3 FCVDTSAWHHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALAD-ELDGL 61
+ +D SA + A P V R + + C LE SA S D+ L D L
Sbjct 5 YLLDKSAAYRAHLPAVRHRLEPLMERGLLARCGITDLEFGVSARSREDHRTLGTYRRDAL 64
Query 62 ARIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRVA 121
+ + RA ++Q L HRSVKI DL+IAA AE G V HYD++++R+A
Sbjct 65 EYVNTPDTVWVRAWEIQEALTDKG--FHRSVKIPDLIIAAVAEHHGIPVMHYDQDFERIA 122
Query 122 AITGQPTEWIVPRGT 136
AIT QP EW+V GT
Sbjct 123 AITRQPVEWVVAPGT 137
>gi|315504329|ref|YP_004083216.1| pilt protein domain-containing protein [Micromonospora sp. L5]
gi|315410948|gb|ADU09065.1| PilT protein domain protein [Micromonospora sp. L5]
Length=139
Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/133 (35%), Positives = 71/133 (54%), Gaps = 2/133 (1%)
Query 3 FCVDTSAWHHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALADELDGLA 62
+ +D SA +P VA + +C + +E+++SA SA D L G
Sbjct 6 YLLDKSALARWPKPAVAPVLDELSDRGLLAVCGAIEIEVVHSARSAKDAKRARWLLRGFD 65
Query 63 RIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRVAA 122
+ + + + RA +Q + H +HR++ +ADL+IAA AE G V HYD ++D + A
Sbjct 66 WLAMPDDIWDRAIDIQVQALHKG--NHRALSMADLLIAATAERHGVTVLHYDGDFDLITA 123
Query 123 ITGQPTEWIVPRG 135
ITGQPT W+VP G
Sbjct 124 ITGQPTTWVVPAG 136
>gi|340627758|ref|YP_004746210.1| hypothetical protein MCAN_27841 [Mycobacterium canettii CIPT
140010059]
gi|340005948|emb|CCC45115.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=138
Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/135 (38%), Positives = 68/135 (51%), Gaps = 3/135 (2%)
Query 3 FCVDTSAWHHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALAD-ELDGL 61
+ +D SA + A P V R + + C LE SA S D+ L D L
Sbjct 5 YLLDKSAAYRAHLPAVRHRLEPLMERGLLARCGITDLEFGVSARSREDHRTLGTYRRDAL 64
Query 62 ARIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRVA 121
+ + RA ++Q L HRSVKI DL+IAA AE G V HYD++++R+A
Sbjct 65 EYVNTPDTVWDRAWEIQEALTDKG--FHRSVKIPDLIIAAVAEHHGIPVMHYDQDFERIA 122
Query 122 AITGQPTEWIVPRGT 136
AIT QP EW+V GT
Sbjct 123 AITRQPVEWVVAPGT 137
>gi|239988547|ref|ZP_04709211.1| hypothetical protein SrosN1_14659 [Streptomyces roseosporus NRRL
11379]
gi|291445528|ref|ZP_06584918.1| PilT protein domain-containing protein [Streptomyces roseosporus
NRRL 15998]
gi|291348475|gb|EFE75379.1| PilT protein domain-containing protein [Streptomyces roseosporus
NRRL 15998]
Length=135
Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/129 (35%), Positives = 66/129 (52%), Gaps = 2/129 (1%)
Query 3 FCVDTSAWHHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALADELDGLA 62
+ +DTSA + W +SA + +CD LE+LYSA S D + + + L
Sbjct 6 YLIDTSALARILLRQSTEDWTRRISAGLVALCDLTELELLYSARSTEDREKVRERLALYT 65
Query 63 RIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRVAA 122
P+ F RA VQ +L A HR+ DL++AA AE SG + HYD +++ +A
Sbjct 66 WCPMPDGVFRRARTVQDQL--TAKGEHRNAGPVDLLLAATAEQSGLTLLHYDRDFETIAR 123
Query 123 ITGQPTEWI 131
TGQPT +
Sbjct 124 TTGQPTRML 132
>gi|308378090|ref|ZP_07668665.1| putative type I restriction-modification system, M subunit [Mycobacterium
tuberculosis SUMu009]
gi|308353571|gb|EFP42422.1| putative type I restriction-modification system, M subunit [Mycobacterium
tuberculosis SUMu009]
Length=718
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/137 (38%), Positives = 70/137 (52%), Gaps = 4/137 (2%)
Query 3 FCVDTSAWHHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALAD-ELDGL 61
+ +D SA + A P V R + + C LE SA S D+ L D L
Sbjct 15 YLLDKSAAYRAHLPAVRHRLEPLMERGLLARCGITDLEFGVSARSREDHRTLGTYRRDAL 74
Query 62 ARIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRVA 121
+ + RA ++Q L HRSVKI DL+IAA AE G V HYD++++R+A
Sbjct 75 EYVNTPDTVWVRAWEIQEALTDKG--FHRSVKIPDLIIAAVAEHHGIPVMHYDQDFERIA 132
Query 122 AITGQPTEWIV-PRGTL 137
AIT QP EW+V PR ++
Sbjct 133 AITRQPVEWVVAPRDSV 149
>gi|289748705|ref|ZP_06508083.1| LOW QUALITY PROTEIN: conserved membrane protein [Mycobacterium
tuberculosis T92]
gi|289689292|gb|EFD56721.1| LOW QUALITY PROTEIN: conserved membrane protein [Mycobacterium
tuberculosis T92]
Length=126
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/99 (45%), Positives = 57/99 (58%), Gaps = 3/99 (3%)
Query 39 LEILYSANSATDYDALADELDGLARIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLV 98
LE+ YSA + T++ L L I A RA +QR LA R KI DL+
Sbjct 30 LEVGYSARNETEWQRLMVALSAFDLIESTASHHRRALGIQRLLA---ARSQRGRKIPDLL 86
Query 99 IAAAAELSGTIVWHYDENYDRVAAITGQPTEWIVPRGTL 137
IAAA E G +V HYD ++D +AA+TGQP +WIVP GT+
Sbjct 87 IAAAGEEHGLVVLHYDADFDLIAAVTGQPCQWIVPAGTI 125
>gi|284045212|ref|YP_003395552.1| PilT protein domain protein [Conexibacter woesei DSM 14684]
gi|283949433|gb|ADB52177.1| PilT protein domain protein [Conexibacter woesei DSM 14684]
Length=148
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/132 (38%), Positives = 70/132 (54%), Gaps = 1/132 (0%)
Query 6 DTSAWHHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALADELDGLARIP 65
DTSA A V +W A+SA QI C V+LE+ ++A A +A+ E IP
Sbjct 17 DTSARLRARSGIVVAQWQRAVSARQITTCPVVKLELFHTARDANAVEAIEVEERAFRSIP 76
Query 66 VGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRVAAITG 125
+ A RELA G +HR V + D++IAAAA+ G V HYD ++DR+A +
Sbjct 77 ITRSVQNAAIGAVRELARRGGGYHR-VSLPDVLIAAAAQDVGADVLHYDRHFDRLAEVLH 135
Query 126 QPTEWIVPRGTL 137
+ W+ P G+L
Sbjct 136 FRSIWLAPAGSL 147
>gi|302559325|ref|ZP_07311667.1| PIN family toxin-antitoxin system, toxin component [Streptomyces
griseoflavus Tu4000]
gi|302476943|gb|EFL40036.1| PIN family toxin-antitoxin system, toxin component [Streptomyces
griseoflavus Tu4000]
Length=139
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/134 (33%), Positives = 71/134 (53%), Gaps = 2/134 (1%)
Query 3 FCVDTSAWHHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALADELDGLA 62
+ +D SA +P V + +C E+++SA +++ ++ L
Sbjct 5 YLIDKSALARWTKPSVKEVLKPLHERYLLAVCQPTEYEMIHSARDSSEATRISTWLHAFD 64
Query 63 RIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRVAA 122
+ + FTRA ++QR A AG H R++ + DL+IAA AEL V HYD ++D +A+
Sbjct 65 YLRTDDDVFTRALEIQRH-ALNAGFH-RALSLPDLLIAATAELHRRTVLHYDGDFDMIAS 122
Query 123 ITGQPTEWIVPRGT 136
+TGQP EW+V G+
Sbjct 123 LTGQPAEWVVAPGS 136
>gi|269124363|ref|YP_003297733.1| PilT protein domain-containing protein [Thermomonospora curvata
DSM 43183]
gi|268309321|gb|ACY95695.1| PilT protein domain protein [Thermomonospora curvata DSM 43183]
Length=136
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/132 (39%), Positives = 74/132 (57%), Gaps = 4/132 (3%)
Query 3 FCVDTSAWHHA-ARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALADEL-DG 60
F DTSA+H P +AR W L A + +C +EI YSA S+ DY+ ++ L +
Sbjct 6 FLADTSAFHRLDGIPAIARNWEDQLRAGLVSVCPVTEIEIFYSARSSRDYERVSARLREV 65
Query 61 LARIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRV 120
+PV F RA +VQ A +A HRS +ADL++AA AE V H D+++D +
Sbjct 66 FGWVPVPERAFQRALEVQE--AMLAQGTHRSAGLADLLLAATAEEYRLTVLHDDKDFDCI 123
Query 121 AAITGQPTEWIV 132
AA+TGQP ++
Sbjct 124 AAVTGQPVRRVL 135
>gi|158318849|ref|YP_001511357.1| PilT domain-containing protein [Frankia sp. EAN1pec]
gi|158114254|gb|ABW16451.1| PilT protein domain protein [Frankia sp. EAN1pec]
Length=159
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/135 (38%), Positives = 72/135 (54%), Gaps = 14/135 (10%)
Query 7 TSAWHHAARPEVARR------WLAALSADQIGICDHVRLEILYSANSATDYDA-LADELD 59
T+ H RP A R WL+ + I I LE+ +SA SA D L L
Sbjct 26 TALAHRQVRPRPAERDPDADRWLSHIQHGLIRITTVTILEVGFSARSAQDLRVRLRRSL- 84
Query 60 GLARIPVGAETF---TRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDEN 116
++ +PV T RA ++Q LA HHR+ + DL+IAA AEL+G +V H D++
Sbjct 85 -VSAMPVENTTPRIEARAVEIQELLASTG--HHRAPSVPDLIIAATAELAGLVVLHVDKD 141
Query 117 YDRVAAITGQPTEWI 131
++ +AA+TGQPTE +
Sbjct 142 FELIAALTGQPTERL 156
>gi|254549168|ref|ZP_05139615.1| hypothetical protein Mtube_01671 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
Length=71
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/61 (53%), Positives = 42/61 (69%), Gaps = 3/61 (4%)
Query 77 VQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRVAAITGQPTEWIVPRGT 136
+QR LA + R KI DL+IAAA E G +V HYD ++D +AA+TGQP +WIVP GT
Sbjct 13 IQRLLAARS---QRGRKIPDLLIAAAGEEHGLVVLHYDADFDLIAAVTGQPCQWIVPAGT 69
Query 137 L 137
+
Sbjct 70 I 70
>gi|340627542|ref|YP_004745994.1| hypothetical protein MCAN_25671 [Mycobacterium canettii CIPT
140010059]
gi|340005732|emb|CCC44898.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=133
Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query 24 AALSADQIGICDHVRLEILYSANSATDYDALADELDGLARIPVGAETFTRACQVQRELAH 83
A + + ICD LE LYSA SATDYD+ L + ++ F R +QR+LAH
Sbjct 22 AGIDLTDLAICDIGELEWLYSARSATDYDSQQTSLRAYQILRAPSDIFDRVRHLQRDLAH 81
Query 84 VAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRVAAI 123
G+ HR+ + DL IA A V H+D +Y R+AA+
Sbjct 82 HRGMWHRT-PLPDLFIAETAIHHRAGVLHHDRDYKRIAAV 120
>gi|15609664|ref|NP_217043.1| hypothetical protein Rv2527 [Mycobacterium tuberculosis H37Rv]
gi|15842061|ref|NP_337098.1| hypothetical protein MT2602 [Mycobacterium tuberculosis CDC1551]
gi|31793708|ref|NP_856201.1| hypothetical protein Mb2556 [Mycobacterium bovis AF2122/97]
53 more sequence titles
Length=133
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query 24 AALSADQIGICDHVRLEILYSANSATDYDALADELDGLARIPVGAETFTRACQVQRELAH 83
A + + ICD LE LYSA SATDYD+ L + ++ F R +QR+LAH
Sbjct 22 AGIDLTDLAICDIGELEWLYSARSATDYDSQQTSLRAYQILRAPSDIFDRVRHLQRDLAH 81
Query 84 VAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRVAAI 123
G+ HR+ + DL IA A V H+D +Y R+A +
Sbjct 82 HRGMWHRT-PLPDLFIAETALHHRAGVLHHDRDYKRIAVV 120
>gi|167967328|ref|ZP_02549605.1| hypothetical protein MtubH3_04542 [Mycobacterium tuberculosis
H37Ra]
gi|254551575|ref|ZP_05142022.1| toxin [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
gi|308232164|ref|ZP_07415137.2| toxin [Mycobacterium tuberculosis SUMu001]
21 more sequence titles
Length=135
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query 24 AALSADQIGICDHVRLEILYSANSATDYDALADELDGLARIPVGAETFTRACQVQRELAH 83
A + + ICD LE LYSA SATDYD+ L + ++ F R +QR+LAH
Sbjct 24 AGIDLTDLAICDIGELEWLYSARSATDYDSQQTSLRAYQILRAPSDIFDRVRHLQRDLAH 83
Query 84 VAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRVAAI 123
G+ HR+ + DL IA A V H+D +Y R+A +
Sbjct 84 HRGMWHRT-PLPDLFIAETALHHRAGVLHHDRDYKRIAVV 122
>gi|333992736|ref|YP_004525350.1| hypothetical protein JDM601_4096 [Mycobacterium sp. JDM601]
gi|333488704|gb|AEF38096.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=131
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/94 (38%), Positives = 52/94 (56%), Gaps = 2/94 (2%)
Query 31 IGICDHVRLEILYSANSATDYDALADEL-DGLARIPVGAETFTRACQVQRELAHVAGLHH 89
+ +C+ LE LYSA S DYD+ + + D +P A+ F R ++QR+LAH G+ H
Sbjct 29 VALCEMSELEWLYSARSGADYDSQSAAVRDAYPVLPAPADIFDRVRRLQRDLAHHRGMWH 88
Query 90 RSVKIADLVIAAAAELSGTIVWHYDENYDRVAAI 123
R+ + DL IA A G V H D +Y R+ +
Sbjct 89 RT-PLPDLFIAETALHHGAGVLHRDRDYQRIRKV 121
>gi|240172880|ref|ZP_04751539.1| hypothetical protein MkanA1_26442 [Mycobacterium kansasii ATCC
12478]
Length=140
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/135 (32%), Positives = 64/135 (48%), Gaps = 3/135 (2%)
Query 4 CVDTSAWHHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDAL-ADELDGLA 62
+DTSA PEVA R + A + + E LYSA + DY+ L +D
Sbjct 8 LIDTSAAARMTHPEVAARLAPLIEAGLVATTAQLDAEALYSARNPADYEQLWSDRRAAYE 67
Query 63 RIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRVAA 122
+P E + A QR+LA HR+V +ADL+IA A + HYD +++ A
Sbjct 68 YLPTNDEHWQTALGAQRKLASTG--RHRAVGMADLLIATLAAAHDMTLIHYDADFEIAAE 125
Query 123 ITGQPTEWIVPRGTL 137
+ +W++ R T+
Sbjct 126 VLPFRHQWVLERDTI 140
>gi|328882585|emb|CCA55824.1| hypothetical protein SVEN_2538 [Streptomyces venezuelae ATCC
10712]
Length=138
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/127 (32%), Positives = 64/127 (51%), Gaps = 8/127 (6%)
Query 1 MVFCVDTSAW-HHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALADELD 59
+ + VDTSA+ H P RRW A + IG+C+ R E+L+SA +A D +A+ ++L
Sbjct 2 ITYLVDTSAYVHLGTDPAAQRRWDAEIETGAIGMCEATRTELLFSAVNADDREAIEEDLA 61
Query 60 GL---ARIPVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDEN 116
+ R+P A + + Q + HR+ + DL+I A A G V H D +
Sbjct 62 AMFAPVRVPKDAWRWVESAQYKL----TQKGQHRAAGVIDLLICATAVHHGLTVLHRDND 117
Query 117 YDRVAAI 123
+ VA +
Sbjct 118 FATVARV 124
>gi|284044239|ref|YP_003394579.1| PilT protein domain protein [Conexibacter woesei DSM 14684]
gi|283948460|gb|ADB51204.1| PilT protein domain protein [Conexibacter woesei DSM 14684]
Length=141
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/135 (33%), Positives = 62/135 (46%), Gaps = 12/135 (8%)
Query 3 FCVDTSAWHHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALADELDGLA 62
+ +D SA R + W + + I LE+ YSA A D A GL
Sbjct 10 WLIDKSALVRLGRSPDSELWAGRIERRLVRIATVTLLEVGYSARDAEDLRA------GLR 63
Query 63 RIPVGAETFTRACQVQRELA-HVAGL-----HHRSVKIADLVIAAAAELSGTIVWHYDEN 116
+ PV + + A V GL HHR+ + DL+IAA AE +G + H D+
Sbjct 64 QPPVASMPVEYMAPASEDRAVEVLGLLADRGHHRAPSVPDLLIAAIAERAGLALLHQDKA 123
Query 117 YDRVAAITGQPTEWI 131
+D +A ITGQPTE +
Sbjct 124 FDLIAEITGQPTERL 138
>gi|229598010|pdb|3H87|A Chain A, Rv0301 Rv0300 Toxin Antitoxin Complex From Mycobacterium
Tuberculosis
gi|229598011|pdb|3H87|B Chain B, Rv0301 Rv0300 Toxin Antitoxin Complex From Mycobacterium
Tuberculosis
Length=156
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/62 (52%), Positives = 40/62 (65%), Gaps = 2/62 (3%)
Query 73 RACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRVAAITGQPTEWIV 132
RA +VQ LA HHR I DL+IAA AELSG V H D+++D +AA+TGQ TE +
Sbjct 93 RALEVQTLLADRG--HHRGPSIPDLLIAATAELSGLTVLHVDKDFDAIAALTGQKTERLT 150
Query 133 PR 134
R
Sbjct 151 HR 152
>gi|289748072|ref|ZP_06507450.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|308369360|ref|ZP_07417480.2| toxin [Mycobacterium tuberculosis SUMu002]
gi|308372857|ref|ZP_07430154.2| toxin [Mycobacterium tuberculosis SUMu005]
11 more sequence titles
Length=143
Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/62 (52%), Positives = 40/62 (65%), Gaps = 2/62 (3%)
Query 73 RACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRVAAITGQPTEWIV 132
RA +VQ LA HHR I DL+IAA AELSG V H D+++D +AA+TGQ TE +
Sbjct 80 RALEVQTLLADRG--HHRGPSIPDLLIAATAELSGLTVLHVDKDFDAIAALTGQKTERLT 137
Query 133 PR 134
R
Sbjct 138 HR 139
>gi|15607442|ref|NP_214815.1| hypothetical protein Rv0301 [Mycobacterium tuberculosis H37Rv]
gi|15839686|ref|NP_334723.1| hypothetical protein MT0314 [Mycobacterium tuberculosis CDC1551]
gi|31791480|ref|NP_853973.1| hypothetical protein Mb0309 [Mycobacterium bovis AF2122/97]
65 more sequence titles
Length=141
Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/62 (52%), Positives = 40/62 (65%), Gaps = 2/62 (3%)
Query 73 RACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRVAAITGQPTEWIV 132
RA +VQ LA HHR I DL+IAA AELSG V H D+++D +AA+TGQ TE +
Sbjct 78 RALEVQTLLADRG--HHRGPSIPDLLIAATAELSGLTVLHVDKDFDAIAALTGQKTERLT 135
Query 133 PR 134
R
Sbjct 136 HR 137
>gi|29832237|ref|NP_826871.1| hypothetical protein SAV_5694 [Streptomyces avermitilis MA-4680]
gi|29609355|dbj|BAC73406.1| hypothetical protein [Streptomyces avermitilis MA-4680]
Length=135
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/125 (33%), Positives = 58/125 (47%), Gaps = 4/125 (3%)
Query 1 MVFCVDTSA-WHHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALADELD 59
+ + +DTSA WH P W ++A +C+ R E LYSA S T D LA+ELD
Sbjct 2 ITYLLDTSALWHLFRTPGALAPWEGHIAAGVFHLCEPTRAEFLYSATSPTHRDELAEELD 61
Query 60 GLARI-PVGAETFTRACQVQRELAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYD 118
L + PV + Q +L HR+ DL++ A A G V H D ++
Sbjct 62 ALCLLSPVPKNAWRWVDTAQYKLTQQG--QHRAAGAIDLLVCATAVHHGHTVLHVDNDFA 119
Query 119 RVAAI 123
VA +
Sbjct 120 TVAGV 124
Lambda K H
0.322 0.133 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128325363320
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40