BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2547
Length=85
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609684|ref|NP_217063.1| hypothetical protein Rv2547 [Mycoba... 166 8e-40
gi|15842083|ref|NP_337120.1| CopG family DNA-binding protein [My... 166 9e-40
gi|340627564|ref|YP_004746016.1| hypothetical protein MCAN_25891... 164 4e-39
gi|289448195|ref|ZP_06437939.1| antitoxin [Mycobacterium tubercu... 164 5e-39
gi|294994343|ref|ZP_06800034.1| CopG family DNA-binding protein ... 130 6e-29
gi|149200536|ref|ZP_01877547.1| transcriptional regulator, CopG ... 47.4 8e-04
gi|149200683|ref|ZP_01877676.1| transcriptional regulator, CopG ... 47.0 0.001
gi|284121613|ref|ZP_06386809.1| hypothetical protein POR_1413 [C... 40.4 0.079
gi|158522353|ref|YP_001530223.1| CopG/DNA-binding domain-contain... 40.0 0.10
gi|292490329|ref|YP_003525768.1| CopG domain protein DNA-binding... 39.7 0.16
gi|325295485|ref|YP_004281999.1| ribbon-helix-helix protein, Cop... 39.7 0.16
gi|336120130|ref|YP_004574908.1| hypothetical protein MLP_44910 ... 37.4 0.66
gi|301062246|ref|ZP_07202923.1| toxin-antitoxin system, antitoxi... 37.4 0.83
gi|94263729|ref|ZP_01287537.1| Helix-turn-helix protein, CopG [d... 37.0 0.92
gi|86361284|ref|YP_473171.1| hypothetical protein RHE_PF00556 [R... 35.4 3.2
gi|29654541|ref|NP_820233.1| CopG family transcriptional regulat... 35.0 3.5
gi|37523665|ref|NP_927042.1| hypothetical protein gsl4096 [Gloeo... 35.0 3.9
gi|220935249|ref|YP_002514148.1| CopG family transcriptional reg... 35.0 4.2
gi|291446799|ref|ZP_06586189.1| predicted protein [Streptomyces ... 34.7 5.0
gi|15608536|ref|NP_215914.1| hypothetical protein Rv1398c [Mycob... 34.3 6.4
gi|15840856|ref|NP_335893.1| CopG family transcriptional regulat... 34.3 6.7
gi|327539142|gb|EGF25772.1| ECF subfamily RNA polymerase sigma-7... 34.3 6.8
gi|32477676|ref|NP_870670.1| ECF subfamily RNA polymerase sigma-... 34.3 6.9
gi|222147862|ref|YP_002548819.1| hypothetical protein Avi_1141 [... 33.9 7.6
gi|300741224|ref|ZP_07071245.1| ribosomal large subunit pseudour... 33.5 9.8
>gi|15609684|ref|NP_217063.1| hypothetical protein Rv2547 [Mycobacterium tuberculosis H37Rv]
gi|31793730|ref|NP_856223.1| hypothetical protein Mb2577 [Mycobacterium bovis AF2122/97]
gi|121638432|ref|YP_978656.1| hypothetical protein BCG_2570 [Mycobacterium bovis BCG str. Pasteur
1173P2]
54 more sequence titles
Length=85
Score = 166 bits (421), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 85/85 (100%), Positives = 85/85 (100%), Gaps = 0/85 (0%)
Query 1 MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGR 60
MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGR
Sbjct 1 MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGR 60
Query 61 DFTGTEYVDAIRGDLNERLARLGLA 85
DFTGTEYVDAIRGDLNERLARLGLA
Sbjct 61 DFTGTEYVDAIRGDLNERLARLGLA 85
>gi|15842083|ref|NP_337120.1| CopG family DNA-binding protein [Mycobacterium tuberculosis CDC1551]
gi|167968844|ref|ZP_02551121.1| DNA-binding protein, CopG family [Mycobacterium tuberculosis
H37Ra]
gi|254232668|ref|ZP_04925995.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
19 more sequence titles
Length=90
Score = 166 bits (421), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 85/85 (100%), Positives = 85/85 (100%), Gaps = 0/85 (0%)
Query 1 MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGR 60
MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGR
Sbjct 6 MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGR 65
Query 61 DFTGTEYVDAIRGDLNERLARLGLA 85
DFTGTEYVDAIRGDLNERLARLGLA
Sbjct 66 DFTGTEYVDAIRGDLNERLARLGLA 90
>gi|340627564|ref|YP_004746016.1| hypothetical protein MCAN_25891 [Mycobacterium canettii CIPT
140010059]
gi|340005754|emb|CCC44920.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=85
Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 84/85 (99%), Positives = 84/85 (99%), Gaps = 0/85 (0%)
Query 1 MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGR 60
MRTQVTLG EELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGR
Sbjct 1 MRTQVTLGAEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGR 60
Query 61 DFTGTEYVDAIRGDLNERLARLGLA 85
DFTGTEYVDAIRGDLNERLARLGLA
Sbjct 61 DFTGTEYVDAIRGDLNERLARLGLA 85
>gi|289448195|ref|ZP_06437939.1| antitoxin [Mycobacterium tuberculosis CPHL_A]
gi|289421153|gb|EFD18354.1| antitoxin [Mycobacterium tuberculosis CPHL_A]
Length=85
Score = 164 bits (414), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 84/85 (99%), Positives = 84/85 (99%), Gaps = 0/85 (0%)
Query 1 MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGR 60
MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSR SWRGR
Sbjct 1 MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRDSWRGR 60
Query 61 DFTGTEYVDAIRGDLNERLARLGLA 85
DFTGTEYVDAIRGDLNERLARLGLA
Sbjct 61 DFTGTEYVDAIRGDLNERLARLGLA 85
>gi|294994343|ref|ZP_06800034.1| CopG family DNA-binding protein [Mycobacterium tuberculosis 210]
Length=86
Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 72/86 (84%), Positives = 73/86 (85%), Gaps = 1/86 (1%)
Query 1 MRTQVTLGKEELELLDRAAKASGASRSEL-IRRAIHRAYGTGSKQERLAALDHSRGSWRG 59
MRTQVTLGKEELELLDRAAKASGASR R G GSKQER+AALDHSRGSWRG
Sbjct 1 MRTQVTLGKEELELLDRAAKASGASRVRTHSTRNSPCLRGLGSKQERVAALDHSRGSWRG 60
Query 60 RDFTGTEYVDAIRGDLNERLARLGLA 85
RDFTGTEYVDAIRGDLNERLARLGLA
Sbjct 61 RDFTGTEYVDAIRGDLNERLARLGLA 86
>gi|149200536|ref|ZP_01877547.1| transcriptional regulator, CopG family protein [Lentisphaera
araneosa HTCC2155]
gi|149136385|gb|EDM24827.1| transcriptional regulator, CopG family protein [Lentisphaera
araneosa HTCC2155]
Length=74
Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/61 (40%), Positives = 39/61 (64%), Gaps = 0/61 (0%)
Query 1 MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGR 60
+RTQV + KEE E L+ A+++G S+SELIR AI + + + + A+L ++ G W+
Sbjct 2 IRTQVYITKEEKESLESLAQSTGKSQSELIRNAIDTFIESNNTKNKKASLLNAFGMWKTN 61
Query 61 D 61
D
Sbjct 62 D 62
>gi|149200683|ref|ZP_01877676.1| transcriptional regulator, CopG family protein [Lentisphaera
araneosa HTCC2155]
gi|149136227|gb|EDM24687.1| transcriptional regulator, CopG family protein [Lentisphaera
araneosa HTCC2155]
Length=74
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/61 (40%), Positives = 38/61 (63%), Gaps = 0/61 (0%)
Query 1 MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGR 60
+RTQV + KEE E L+ A+++G S+SELIR AI + + + A+L ++ G W+
Sbjct 2 IRTQVYITKEEKESLESLAQSTGKSQSELIRNAIDTFIENNNTKNKKASLLNAFGMWKTN 61
Query 61 D 61
D
Sbjct 62 D 62
>gi|284121613|ref|ZP_06386809.1| hypothetical protein POR_1413 [Candidatus Poribacteria sp. WGA-A3]
gi|283829394|gb|EFC33782.1| hypothetical protein POR_1413 [Candidatus Poribacteria sp. WGA-A3]
Length=81
Score = 40.4 bits (93), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 32/81 (40%), Positives = 42/81 (52%), Gaps = 5/81 (6%)
Query 2 RTQVTLGKEELELLDRAAKASGASRSELIRRAI--HRAYGTGSKQERLAA-LDHSRGSWR 58
RT V+L E+ L R A A SEL+RRA+ +R K ERL+ LD +RGSW+
Sbjct 3 RTIVSLPDEDKTWLARQASAQRVPMSELVRRAVREYRERHGNGKSERLSELLDSTRGSWK 62
Query 59 GRDFTGTEYVDAIRGDLNERL 79
D G Y R + +RL
Sbjct 63 HGD--GLRYQSNTRKEWEQRL 81
>gi|158522353|ref|YP_001530223.1| CopG/DNA-binding domain-containing protein [Desulfococcus oleovorans
Hxd3]
gi|158511179|gb|ABW68146.1| CopG domain protein DNA-binding domain protein [Desulfococcus
oleovorans Hxd3]
Length=77
Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/76 (35%), Positives = 40/76 (53%), Gaps = 2/76 (2%)
Query 1 MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGR 60
+RTQ+ L +++ L+ AK +G ++SELIR AI G R + L + G W+ R
Sbjct 2 IRTQIYLTEKQRNQLNAIAKVAGKNQSELIREAIDNLIGKTGGGHRASVLRQAAGIWKDR 61
Query 61 DFTGTEYVDAIRGDLN 76
T DA+R + N
Sbjct 62 --TDLPDFDALREEWN 75
>gi|292490329|ref|YP_003525768.1| CopG domain protein DNA-binding domain protein [Nitrosococcus
halophilus Nc4]
gi|291578924|gb|ADE13381.1| CopG domain protein DNA-binding domain protein [Nitrosococcus
halophilus Nc4]
Length=82
Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/60 (37%), Positives = 34/60 (57%), Gaps = 0/60 (0%)
Query 1 MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGR 60
+RTQ+ L + E + L A+ +G ++SELIR AI R + +R L +RG W+ R
Sbjct 2 VRTQIYLTEIEQQALRVLARRTGRTQSELIREAIDRFIAQAEQTDRRLLLQQARGLWQNR 61
>gi|325295485|ref|YP_004281999.1| ribbon-helix-helix protein, CopG family [Desulfurobacterium thermolithotrophum
DSM 11699]
gi|325065933|gb|ADY73940.1| ribbon-helix-helix protein, CopG family [Desulfurobacterium thermolithotrophum
DSM 11699]
Length=85
Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/73 (33%), Positives = 39/73 (54%), Gaps = 2/73 (2%)
Query 2 RTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGS--KQERLAALDHSRGSWRG 59
RTQ+ L ++ LL ++ SG + SE+IR + ++ S K+ L ALD + G+W
Sbjct 3 RTQIYLDEKLHYLLKEESRKSGKTISEIIRNRLWNSFKENSNRKEALLKALDKAFGAWEE 62
Query 60 RDFTGTEYVDAIR 72
RD +V +R
Sbjct 63 RDMDPESFVRELR 75
>gi|336120130|ref|YP_004574908.1| hypothetical protein MLP_44910 [Microlunatus phosphovorus NM-1]
gi|334687920|dbj|BAK37505.1| hypothetical protein MLP_44910 [Microlunatus phosphovorus NM-1]
Length=90
Score = 37.4 bits (85), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/56 (43%), Positives = 31/56 (56%), Gaps = 2/56 (3%)
Query 2 RTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQ--ERLAALDHSRG 55
RT + L + E LDR A G SR+E+IRR + RA + E LAA+D S G
Sbjct 3 RTNIYLEDRQTEALDRLAAGEGVSRAEVIRRLLDRALAGNDDRLAEDLAAIDCSFG 58
>gi|301062246|ref|ZP_07202923.1| toxin-antitoxin system, antitoxin component, ribbon-helix-helix
domain protein [delta proteobacterium NaphS2]
gi|300443678|gb|EFK07766.1| toxin-antitoxin system, antitoxin component, ribbon-helix-helix
domain protein [delta proteobacterium NaphS2]
Length=89
Score = 37.4 bits (85), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/76 (35%), Positives = 35/76 (47%), Gaps = 2/76 (2%)
Query 1 MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGR 60
+RTQ+ L + + L AK+ G +SELIR AI R K R L + G W R
Sbjct 13 IRTQIYLTEHQRNELAIMAKSLGKKQSELIREAIDRLIDQAGKTHRKQVLQKAAGIWSNR 72
Query 61 DFTGTEYVDAIRGDLN 76
T + IR + N
Sbjct 73 --TDLPDFETIRSEWN 86
>gi|94263729|ref|ZP_01287537.1| Helix-turn-helix protein, CopG [delta proteobacterium MLMS-1]
gi|94266198|ref|ZP_01289908.1| Helix-turn-helix protein, CopG [delta proteobacterium MLMS-1]
gi|93453246|gb|EAT03701.1| Helix-turn-helix protein, CopG [delta proteobacterium MLMS-1]
gi|93455928|gb|EAT06087.1| Helix-turn-helix protein, CopG [delta proteobacterium MLMS-1]
Length=103
Score = 37.0 bits (84), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 25/69 (37%), Positives = 37/69 (54%), Gaps = 4/69 (5%)
Query 1 MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGR 60
+RTQV L ++E + A+A+G ++ELIR A+ S + R LD + G WR R
Sbjct 28 IRTQVYLTEKERLAISSLAEATGKKQAELIREAVDIFIELRSGRHRDEILDQAAGMWRDR 87
Query 61 ----DFTGT 65
DFT +
Sbjct 88 NDLPDFTAS 96
>gi|86361284|ref|YP_473171.1| hypothetical protein RHE_PF00556 [Rhizobium etli CFN 42]
gi|86285386|gb|ABC94444.1| hypothetical conserved protein [Rhizobium etli CFN 42]
Length=71
Score = 35.4 bits (80), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/72 (34%), Positives = 34/72 (48%), Gaps = 4/72 (5%)
Query 1 MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGR 60
MRT V +G E++ LDR A+ SR+ LIR+AI+ + A G W R
Sbjct 1 MRTLVDIGDPEVKALDRLAQREKMSRAALIRKAINDFLARNNADIEAEAF----GLWGDR 56
Query 61 DFTGTEYVDAIR 72
G Y + +R
Sbjct 57 KIDGLAYQENMR 68
>gi|29654541|ref|NP_820233.1| CopG family transcriptional regulator [Coxiella burnetii RSA
493]
gi|153208842|ref|ZP_01947066.1| ribbon-helix-helix protein, copG family [Coxiella burnetii 'MSU
Goat Q177']
gi|154706209|ref|YP_001424675.1| transcriptional regulator, CopG family [Coxiella burnetii Dugway
5J108-111]
11 more sequence titles
gi|161831530|ref|YP_001597088.1| CopG family protein [Coxiella burnetii RSA 331]
gi|165921442|ref|ZP_02219630.1| ribbon-helix-helix protein, copG family [Coxiella burnetii RSA
334]
gi|212212377|ref|YP_002303313.1| transcriptional regulator, CopG family [Coxiella burnetii CbuG_Q212]
gi|212218654|ref|YP_002305441.1| transcriptional regulator, CopG family [Coxiella burnetii CbuK_Q154]
gi|29541808|gb|AAO90747.1| transcriptional regulator, CopG family [Coxiella burnetii RSA
493]
gi|120575693|gb|EAX32317.1| ribbon-helix-helix protein, copG family [Coxiella burnetii 'MSU
Goat Q177']
gi|154355495|gb|ABS76957.1| transcriptional regulator, CopG family [Coxiella burnetii Dugway
5J108-111]
gi|161763397|gb|ABX79039.1| ribbon-helix-helix protein, copG family [Coxiella burnetii RSA
331]
gi|165916757|gb|EDR35361.1| ribbon-helix-helix protein, copG family [Coxiella burnetii RSA
334]
gi|212010787|gb|ACJ18168.1| transcriptional regulator, CopG family [Coxiella burnetii CbuG_Q212]
gi|212012916|gb|ACJ20296.1| transcriptional regulator, CopG family [Coxiella burnetii CbuK_Q154]
Length=84
Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/82 (32%), Positives = 46/82 (57%), Gaps = 6/82 (7%)
Query 1 MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGT--GSKQERLAALDHSRGSWR 58
+RTQ+ L K+E + L+ ++ G S+S LIR AI + ++ + AA++ ++G W
Sbjct 2 IRTQIYLTKQERKYLNLLSQKIGKSQSALIREAIDQFIKAHLKARDDHQAAMEAAKGLWA 61
Query 59 GR-DFTGTEYVDAIRGDLNERL 79
R D + + IR +L+ RL
Sbjct 62 DRKDLSN---LTKIRKELDNRL 80
>gi|37523665|ref|NP_927042.1| hypothetical protein gsl4096 [Gloeobacter violaceus PCC 7421]
gi|35214670|dbj|BAC92037.1| gsl4096 [Gloeobacter violaceus PCC 7421]
Length=79
Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/57 (36%), Positives = 29/57 (51%), Gaps = 0/57 (0%)
Query 5 VTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGRD 61
V L EE E LDR A+ +G + +EL+ A+ S R L ++G W+ RD
Sbjct 6 VALTHEENEALDRIAQQTGKTSAELLHEALAEFIARFSAAHRRQLLQQAQGMWKDRD 62
>gi|220935249|ref|YP_002514148.1| CopG family transcriptional regulator [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|219996559|gb|ACL73161.1| putative transcriptional regulator, CopG family [Thioalkalivibrio
sulfidophilus HL-EbGr7]
Length=73
Score = 35.0 bits (79), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/76 (37%), Positives = 39/76 (52%), Gaps = 8/76 (10%)
Query 1 MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAY--GTGSKQERLAALDHSRGSWR 58
MRT V L EEL+ + AK S++E IRRA+ RAY + + A G W
Sbjct 1 MRTVVDLPDEELQAIKALAKREKISQAEAIRRAV-RAYLHARPAPDKESPAF----GLWE 55
Query 59 GRDFTGTEYVDAIRGD 74
GR+ G +Y D +R +
Sbjct 56 GRE-EGIQYQDTLRDE 70
>gi|291446799|ref|ZP_06586189.1| predicted protein [Streptomyces roseosporus NRRL 15998]
gi|291349746|gb|EFE76650.1| predicted protein [Streptomyces roseosporus NRRL 15998]
Length=107
Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 30/85 (36%), Positives = 43/85 (51%), Gaps = 11/85 (12%)
Query 1 MRTQVTLGKEELEL-LDRAAKASGASRSELIRRAIHRAYGTGSKQER---LAALDHSRGS 56
++T V L +ELE+ LD + A+G S++ELIRR I + + +R L D
Sbjct 29 IKTTVYL-PDELEVRLDAESSATGVSKAELIRRGIAMLLDSAERPKRSRELPVFDS---- 83
Query 57 WRGRDFTGTEYVDAIRGDLNERLAR 81
GR T E DA+ + ER AR
Sbjct 84 --GRSRTPDEMDDAVYEHIKERAAR 106
>gi|15608536|ref|NP_215914.1| hypothetical protein Rv1398c [Mycobacterium tuberculosis H37Rv]
gi|31792592|ref|NP_855085.1| hypothetical protein Mb1433c [Mycobacterium bovis AF2122/97]
gi|121637328|ref|YP_977551.1| hypothetical protein BCG_1459c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
73 more sequence titles
Length=85
Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/62 (38%), Positives = 33/62 (54%), Gaps = 2/62 (3%)
Query 2 RTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQ--ERLAALDHSRGSWRG 59
RT + L +E+ LD+ A G SR+ELIR ++RA T L A++ S G+ R
Sbjct 3 RTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAGDDLASDLQAINDSFGTLRH 62
Query 60 RD 61
D
Sbjct 63 LD 64
>gi|15840856|ref|NP_335893.1| CopG family transcriptional regulator [Mycobacterium tuberculosis
CDC1551]
gi|13881055|gb|AAK45707.1| transcriptional regulator, CopG family [Mycobacterium tuberculosis
CDC1551]
Length=89
Score = 34.3 bits (77), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/62 (38%), Positives = 33/62 (54%), Gaps = 2/62 (3%)
Query 2 RTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQ--ERLAALDHSRGSWRG 59
RT + L +E+ LD+ A G SR+ELIR ++RA T L A++ S G+ R
Sbjct 7 RTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAGDDLASDLQAINDSFGTLRH 66
Query 60 RD 61
D
Sbjct 67 LD 68
>gi|327539142|gb|EGF25772.1| ECF subfamily RNA polymerase sigma-70 factor [Rhodopirellula
baltica WH47]
Length=173
Score = 34.3 bits (77), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/64 (33%), Positives = 30/64 (47%), Gaps = 7/64 (10%)
Query 16 DRAAKASGASRSELIRR-------AIHRAYGTGSKQERLAALDHSRGSWRGRDFTGTEYV 68
D + S + SE +RR + HR +G + LD S W G+D TG E V
Sbjct 46 DNFVQHSDEATSEYLRRTAYNLLVSYHRKFGRIHLSDSPELLDESWQRWAGKDLTGNETV 105
Query 69 DAIR 72
+A+R
Sbjct 106 EALR 109
>gi|32477676|ref|NP_870670.1| ECF subfamily RNA polymerase sigma-70 factor [Rhodopirellula
baltica SH 1]
gi|32448230|emb|CAD77747.1| probable sigma-70 factor (ECF subfamily) [Rhodopirellula baltica
SH 1]
Length=193
Score = 34.3 bits (77), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/64 (33%), Positives = 30/64 (47%), Gaps = 7/64 (10%)
Query 16 DRAAKASGASRSELIRR-------AIHRAYGTGSKQERLAALDHSRGSWRGRDFTGTEYV 68
D + S + SE +RR + HR +G + LD S W G+D TG E V
Sbjct 66 DNFVQHSDEATSEYLRRTAYNLLVSYHRKFGRIHLSDSPELLDESWQRWAGKDLTGNETV 125
Query 69 DAIR 72
+A+R
Sbjct 126 EALR 129
>gi|222147862|ref|YP_002548819.1| hypothetical protein Avi_1141 [Agrobacterium vitis S4]
gi|221734850|gb|ACM35813.1| Conserved hypothetical protein [Agrobacterium vitis S4]
Length=70
Score = 33.9 bits (76), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/72 (34%), Positives = 35/72 (49%), Gaps = 5/72 (6%)
Query 1 MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGR 60
MRT + L + + LDR A+ SR+ LIR+A+ K + LDH G W+ +
Sbjct 1 MRTLIDLDDDAVVKLDRIARQEKISRAALIRQAVASLLEERQKPD----LDHGFGLWKNQ 56
Query 61 DFTGTEYVDAIR 72
G Y A+R
Sbjct 57 P-DGLAYQQALR 67
>gi|300741224|ref|ZP_07071245.1| ribosomal large subunit pseudouridine synthase B [Rothia dentocariosa
M567]
gi|300380409|gb|EFJ76971.1| ribosomal large subunit pseudouridine synthase B [Rothia dentocariosa
M567]
Length=357
Score = 33.5 bits (75), Expect = 9.8, Method: Composition-based stats.
Identities = 19/48 (40%), Positives = 27/48 (57%), Gaps = 6/48 (12%)
Query 17 RAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGRDFTG 64
RAA++ GA S+ RRA HR Y +G A H RG +R +++G
Sbjct 55 RAARSHGAGASKRDRRAPHRPYRSGE------AFPHERGEYRVNNYSG 96
Lambda K H
0.317 0.132 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 131466506940
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40