BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2547

Length=85
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609684|ref|NP_217063.1|  hypothetical protein Rv2547 [Mycoba...   166    8e-40
gi|15842083|ref|NP_337120.1|  CopG family DNA-binding protein [My...   166    9e-40
gi|340627564|ref|YP_004746016.1|  hypothetical protein MCAN_25891...   164    4e-39
gi|289448195|ref|ZP_06437939.1|  antitoxin [Mycobacterium tubercu...   164    5e-39
gi|294994343|ref|ZP_06800034.1|  CopG family DNA-binding protein ...   130    6e-29
gi|149200536|ref|ZP_01877547.1|  transcriptional regulator, CopG ...  47.4    8e-04
gi|149200683|ref|ZP_01877676.1|  transcriptional regulator, CopG ...  47.0    0.001
gi|284121613|ref|ZP_06386809.1|  hypothetical protein POR_1413 [C...  40.4    0.079
gi|158522353|ref|YP_001530223.1|  CopG/DNA-binding domain-contain...  40.0    0.10 
gi|292490329|ref|YP_003525768.1|  CopG domain protein DNA-binding...  39.7    0.16 
gi|325295485|ref|YP_004281999.1|  ribbon-helix-helix protein, Cop...  39.7    0.16 
gi|336120130|ref|YP_004574908.1|  hypothetical protein MLP_44910 ...  37.4    0.66 
gi|301062246|ref|ZP_07202923.1|  toxin-antitoxin system, antitoxi...  37.4    0.83 
gi|94263729|ref|ZP_01287537.1|  Helix-turn-helix protein, CopG [d...  37.0    0.92 
gi|86361284|ref|YP_473171.1|  hypothetical protein RHE_PF00556 [R...  35.4    3.2  
gi|29654541|ref|NP_820233.1|  CopG family transcriptional regulat...  35.0    3.5  
gi|37523665|ref|NP_927042.1|  hypothetical protein gsl4096 [Gloeo...  35.0    3.9  
gi|220935249|ref|YP_002514148.1|  CopG family transcriptional reg...  35.0    4.2  
gi|291446799|ref|ZP_06586189.1|  predicted protein [Streptomyces ...  34.7    5.0  
gi|15608536|ref|NP_215914.1|  hypothetical protein Rv1398c [Mycob...  34.3    6.4  
gi|15840856|ref|NP_335893.1|  CopG family transcriptional regulat...  34.3    6.7  
gi|327539142|gb|EGF25772.1|  ECF subfamily RNA polymerase sigma-7...  34.3    6.8  
gi|32477676|ref|NP_870670.1|  ECF subfamily RNA polymerase sigma-...  34.3    6.9  
gi|222147862|ref|YP_002548819.1|  hypothetical protein Avi_1141 [...  33.9    7.6  
gi|300741224|ref|ZP_07071245.1|  ribosomal large subunit pseudour...  33.5    9.8  


>gi|15609684|ref|NP_217063.1| hypothetical protein Rv2547 [Mycobacterium tuberculosis H37Rv]
 gi|31793730|ref|NP_856223.1| hypothetical protein Mb2577 [Mycobacterium bovis AF2122/97]
 gi|121638432|ref|YP_978656.1| hypothetical protein BCG_2570 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 54 more sequence titles
 Length=85

 Score =  166 bits (421),  Expect = 8e-40, Method: Compositional matrix adjust.
 Identities = 85/85 (100%), Positives = 85/85 (100%), Gaps = 0/85 (0%)

Query  1   MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGR  60
           MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGR
Sbjct  1   MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGR  60

Query  61  DFTGTEYVDAIRGDLNERLARLGLA  85
           DFTGTEYVDAIRGDLNERLARLGLA
Sbjct  61  DFTGTEYVDAIRGDLNERLARLGLA  85


>gi|15842083|ref|NP_337120.1| CopG family DNA-binding protein [Mycobacterium tuberculosis CDC1551]
 gi|167968844|ref|ZP_02551121.1| DNA-binding protein, CopG family [Mycobacterium tuberculosis 
H37Ra]
 gi|254232668|ref|ZP_04925995.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 19 more sequence titles
 Length=90

 Score =  166 bits (421),  Expect = 9e-40, Method: Compositional matrix adjust.
 Identities = 85/85 (100%), Positives = 85/85 (100%), Gaps = 0/85 (0%)

Query  1   MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGR  60
           MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGR
Sbjct  6   MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGR  65

Query  61  DFTGTEYVDAIRGDLNERLARLGLA  85
           DFTGTEYVDAIRGDLNERLARLGLA
Sbjct  66  DFTGTEYVDAIRGDLNERLARLGLA  90


>gi|340627564|ref|YP_004746016.1| hypothetical protein MCAN_25891 [Mycobacterium canettii CIPT 
140010059]
 gi|340005754|emb|CCC44920.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=85

 Score =  164 bits (415),  Expect = 4e-39, Method: Compositional matrix adjust.
 Identities = 84/85 (99%), Positives = 84/85 (99%), Gaps = 0/85 (0%)

Query  1   MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGR  60
           MRTQVTLG EELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGR
Sbjct  1   MRTQVTLGAEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGR  60

Query  61  DFTGTEYVDAIRGDLNERLARLGLA  85
           DFTGTEYVDAIRGDLNERLARLGLA
Sbjct  61  DFTGTEYVDAIRGDLNERLARLGLA  85


>gi|289448195|ref|ZP_06437939.1| antitoxin [Mycobacterium tuberculosis CPHL_A]
 gi|289421153|gb|EFD18354.1| antitoxin [Mycobacterium tuberculosis CPHL_A]
Length=85

 Score =  164 bits (414),  Expect = 5e-39, Method: Compositional matrix adjust.
 Identities = 84/85 (99%), Positives = 84/85 (99%), Gaps = 0/85 (0%)

Query  1   MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGR  60
           MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSR SWRGR
Sbjct  1   MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRDSWRGR  60

Query  61  DFTGTEYVDAIRGDLNERLARLGLA  85
           DFTGTEYVDAIRGDLNERLARLGLA
Sbjct  61  DFTGTEYVDAIRGDLNERLARLGLA  85


>gi|294994343|ref|ZP_06800034.1| CopG family DNA-binding protein [Mycobacterium tuberculosis 210]
Length=86

 Score =  130 bits (327),  Expect = 6e-29, Method: Compositional matrix adjust.
 Identities = 72/86 (84%), Positives = 73/86 (85%), Gaps = 1/86 (1%)

Query  1   MRTQVTLGKEELELLDRAAKASGASRSEL-IRRAIHRAYGTGSKQERLAALDHSRGSWRG  59
           MRTQVTLGKEELELLDRAAKASGASR      R      G GSKQER+AALDHSRGSWRG
Sbjct  1   MRTQVTLGKEELELLDRAAKASGASRVRTHSTRNSPCLRGLGSKQERVAALDHSRGSWRG  60

Query  60  RDFTGTEYVDAIRGDLNERLARLGLA  85
           RDFTGTEYVDAIRGDLNERLARLGLA
Sbjct  61  RDFTGTEYVDAIRGDLNERLARLGLA  86


>gi|149200536|ref|ZP_01877547.1| transcriptional regulator, CopG family protein [Lentisphaera 
araneosa HTCC2155]
 gi|149136385|gb|EDM24827.1| transcriptional regulator, CopG family protein [Lentisphaera 
araneosa HTCC2155]
Length=74

 Score = 47.4 bits (111),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 24/61 (40%), Positives = 39/61 (64%), Gaps = 0/61 (0%)

Query  1   MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGR  60
           +RTQV + KEE E L+  A+++G S+SELIR AI     + + + + A+L ++ G W+  
Sbjct  2   IRTQVYITKEEKESLESLAQSTGKSQSELIRNAIDTFIESNNTKNKKASLLNAFGMWKTN  61

Query  61  D  61
           D
Sbjct  62  D  62


>gi|149200683|ref|ZP_01877676.1| transcriptional regulator, CopG family protein [Lentisphaera 
araneosa HTCC2155]
 gi|149136227|gb|EDM24687.1| transcriptional regulator, CopG family protein [Lentisphaera 
araneosa HTCC2155]
Length=74

 Score = 47.0 bits (110),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 24/61 (40%), Positives = 38/61 (63%), Gaps = 0/61 (0%)

Query  1   MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGR  60
           +RTQV + KEE E L+  A+++G S+SELIR AI       + + + A+L ++ G W+  
Sbjct  2   IRTQVYITKEEKESLESLAQSTGKSQSELIRNAIDTFIENNNTKNKKASLLNAFGMWKTN  61

Query  61  D  61
           D
Sbjct  62  D  62


>gi|284121613|ref|ZP_06386809.1| hypothetical protein POR_1413 [Candidatus Poribacteria sp. WGA-A3]
 gi|283829394|gb|EFC33782.1| hypothetical protein POR_1413 [Candidatus Poribacteria sp. WGA-A3]
Length=81

 Score = 40.4 bits (93),  Expect = 0.079, Method: Compositional matrix adjust.
 Identities = 32/81 (40%), Positives = 42/81 (52%), Gaps = 5/81 (6%)

Query  2   RTQVTLGKEELELLDRAAKASGASRSELIRRAI--HRAYGTGSKQERLAA-LDHSRGSWR  58
           RT V+L  E+   L R A A     SEL+RRA+  +R      K ERL+  LD +RGSW+
Sbjct  3   RTIVSLPDEDKTWLARQASAQRVPMSELVRRAVREYRERHGNGKSERLSELLDSTRGSWK  62

Query  59  GRDFTGTEYVDAIRGDLNERL  79
             D  G  Y    R +  +RL
Sbjct  63  HGD--GLRYQSNTRKEWEQRL  81


>gi|158522353|ref|YP_001530223.1| CopG/DNA-binding domain-containing protein [Desulfococcus oleovorans 
Hxd3]
 gi|158511179|gb|ABW68146.1| CopG domain protein DNA-binding domain protein [Desulfococcus 
oleovorans Hxd3]
Length=77

 Score = 40.0 bits (92),  Expect = 0.10, Method: Compositional matrix adjust.
 Identities = 26/76 (35%), Positives = 40/76 (53%), Gaps = 2/76 (2%)

Query  1   MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGR  60
           +RTQ+ L +++   L+  AK +G ++SELIR AI    G      R + L  + G W+ R
Sbjct  2   IRTQIYLTEKQRNQLNAIAKVAGKNQSELIREAIDNLIGKTGGGHRASVLRQAAGIWKDR  61

Query  61  DFTGTEYVDAIRGDLN  76
             T     DA+R + N
Sbjct  62  --TDLPDFDALREEWN  75


>gi|292490329|ref|YP_003525768.1| CopG domain protein DNA-binding domain protein [Nitrosococcus 
halophilus Nc4]
 gi|291578924|gb|ADE13381.1| CopG domain protein DNA-binding domain protein [Nitrosococcus 
halophilus Nc4]
Length=82

 Score = 39.7 bits (91),  Expect = 0.16, Method: Compositional matrix adjust.
 Identities = 22/60 (37%), Positives = 34/60 (57%), Gaps = 0/60 (0%)

Query  1   MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGR  60
           +RTQ+ L + E + L   A+ +G ++SELIR AI R      + +R   L  +RG W+ R
Sbjct  2   VRTQIYLTEIEQQALRVLARRTGRTQSELIREAIDRFIAQAEQTDRRLLLQQARGLWQNR  61


>gi|325295485|ref|YP_004281999.1| ribbon-helix-helix protein, CopG family [Desulfurobacterium thermolithotrophum 
DSM 11699]
 gi|325065933|gb|ADY73940.1| ribbon-helix-helix protein, CopG family [Desulfurobacterium thermolithotrophum 
DSM 11699]
Length=85

 Score = 39.7 bits (91),  Expect = 0.16, Method: Compositional matrix adjust.
 Identities = 24/73 (33%), Positives = 39/73 (54%), Gaps = 2/73 (2%)

Query  2   RTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGS--KQERLAALDHSRGSWRG  59
           RTQ+ L ++   LL   ++ SG + SE+IR  +  ++   S  K+  L ALD + G+W  
Sbjct  3   RTQIYLDEKLHYLLKEESRKSGKTISEIIRNRLWNSFKENSNRKEALLKALDKAFGAWEE  62

Query  60  RDFTGTEYVDAIR  72
           RD     +V  +R
Sbjct  63  RDMDPESFVRELR  75


>gi|336120130|ref|YP_004574908.1| hypothetical protein MLP_44910 [Microlunatus phosphovorus NM-1]
 gi|334687920|dbj|BAK37505.1| hypothetical protein MLP_44910 [Microlunatus phosphovorus NM-1]
Length=90

 Score = 37.4 bits (85),  Expect = 0.66, Method: Compositional matrix adjust.
 Identities = 24/56 (43%), Positives = 31/56 (56%), Gaps = 2/56 (3%)

Query  2   RTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQ--ERLAALDHSRG  55
           RT + L   + E LDR A   G SR+E+IRR + RA      +  E LAA+D S G
Sbjct  3   RTNIYLEDRQTEALDRLAAGEGVSRAEVIRRLLDRALAGNDDRLAEDLAAIDCSFG  58


>gi|301062246|ref|ZP_07202923.1| toxin-antitoxin system, antitoxin component, ribbon-helix-helix 
domain protein [delta proteobacterium NaphS2]
 gi|300443678|gb|EFK07766.1| toxin-antitoxin system, antitoxin component, ribbon-helix-helix 
domain protein [delta proteobacterium NaphS2]
Length=89

 Score = 37.4 bits (85),  Expect = 0.83, Method: Compositional matrix adjust.
 Identities = 26/76 (35%), Positives = 35/76 (47%), Gaps = 2/76 (2%)

Query  1   MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGR  60
           +RTQ+ L + +   L   AK+ G  +SELIR AI R      K  R   L  + G W  R
Sbjct  13  IRTQIYLTEHQRNELAIMAKSLGKKQSELIREAIDRLIDQAGKTHRKQVLQKAAGIWSNR  72

Query  61  DFTGTEYVDAIRGDLN  76
             T     + IR + N
Sbjct  73  --TDLPDFETIRSEWN  86


>gi|94263729|ref|ZP_01287537.1| Helix-turn-helix protein, CopG [delta proteobacterium MLMS-1]
 gi|94266198|ref|ZP_01289908.1| Helix-turn-helix protein, CopG [delta proteobacterium MLMS-1]
 gi|93453246|gb|EAT03701.1| Helix-turn-helix protein, CopG [delta proteobacterium MLMS-1]
 gi|93455928|gb|EAT06087.1| Helix-turn-helix protein, CopG [delta proteobacterium MLMS-1]
Length=103

 Score = 37.0 bits (84),  Expect = 0.92, Method: Compositional matrix adjust.
 Identities = 25/69 (37%), Positives = 37/69 (54%), Gaps = 4/69 (5%)

Query  1   MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGR  60
           +RTQV L ++E   +   A+A+G  ++ELIR A+       S + R   LD + G WR R
Sbjct  28  IRTQVYLTEKERLAISSLAEATGKKQAELIREAVDIFIELRSGRHRDEILDQAAGMWRDR  87

Query  61  ----DFTGT  65
               DFT +
Sbjct  88  NDLPDFTAS  96


>gi|86361284|ref|YP_473171.1| hypothetical protein RHE_PF00556 [Rhizobium etli CFN 42]
 gi|86285386|gb|ABC94444.1| hypothetical conserved protein [Rhizobium etli CFN 42]
Length=71

 Score = 35.4 bits (80),  Expect = 3.2, Method: Compositional matrix adjust.
 Identities = 24/72 (34%), Positives = 34/72 (48%), Gaps = 4/72 (5%)

Query  1   MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGR  60
           MRT V +G  E++ LDR A+    SR+ LIR+AI+      +      A     G W  R
Sbjct  1   MRTLVDIGDPEVKALDRLAQREKMSRAALIRKAINDFLARNNADIEAEAF----GLWGDR  56

Query  61  DFTGTEYVDAIR  72
              G  Y + +R
Sbjct  57  KIDGLAYQENMR  68


>gi|29654541|ref|NP_820233.1| CopG family transcriptional regulator [Coxiella burnetii RSA 
493]
 gi|153208842|ref|ZP_01947066.1| ribbon-helix-helix protein, copG family [Coxiella burnetii 'MSU 
Goat Q177']
 gi|154706209|ref|YP_001424675.1| transcriptional regulator, CopG family [Coxiella burnetii Dugway 
5J108-111]
 11 more sequence titles
 Length=84

 Score = 35.0 bits (79),  Expect = 3.5, Method: Compositional matrix adjust.
 Identities = 26/82 (32%), Positives = 46/82 (57%), Gaps = 6/82 (7%)

Query  1   MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGT--GSKQERLAALDHSRGSWR  58
           +RTQ+ L K+E + L+  ++  G S+S LIR AI +       ++ +  AA++ ++G W 
Sbjct  2   IRTQIYLTKQERKYLNLLSQKIGKSQSALIREAIDQFIKAHLKARDDHQAAMEAAKGLWA  61

Query  59  GR-DFTGTEYVDAIRGDLNERL  79
            R D +    +  IR +L+ RL
Sbjct  62  DRKDLSN---LTKIRKELDNRL  80


>gi|37523665|ref|NP_927042.1| hypothetical protein gsl4096 [Gloeobacter violaceus PCC 7421]
 gi|35214670|dbj|BAC92037.1| gsl4096 [Gloeobacter violaceus PCC 7421]
Length=79

 Score = 35.0 bits (79),  Expect = 3.9, Method: Compositional matrix adjust.
 Identities = 20/57 (36%), Positives = 29/57 (51%), Gaps = 0/57 (0%)

Query  5   VTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGRD  61
           V L  EE E LDR A+ +G + +EL+  A+       S   R   L  ++G W+ RD
Sbjct  6   VALTHEENEALDRIAQQTGKTSAELLHEALAEFIARFSAAHRRQLLQQAQGMWKDRD  62


>gi|220935249|ref|YP_002514148.1| CopG family transcriptional regulator [Thioalkalivibrio sulfidophilus 
HL-EbGr7]
 gi|219996559|gb|ACL73161.1| putative transcriptional regulator, CopG family [Thioalkalivibrio 
sulfidophilus HL-EbGr7]
Length=73

 Score = 35.0 bits (79),  Expect = 4.2, Method: Compositional matrix adjust.
 Identities = 28/76 (37%), Positives = 39/76 (52%), Gaps = 8/76 (10%)

Query  1   MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAY--GTGSKQERLAALDHSRGSWR  58
           MRT V L  EEL+ +   AK    S++E IRRA+ RAY     +  +   A     G W 
Sbjct  1   MRTVVDLPDEELQAIKALAKREKISQAEAIRRAV-RAYLHARPAPDKESPAF----GLWE  55

Query  59  GRDFTGTEYVDAIRGD  74
           GR+  G +Y D +R +
Sbjct  56  GRE-EGIQYQDTLRDE  70


>gi|291446799|ref|ZP_06586189.1| predicted protein [Streptomyces roseosporus NRRL 15998]
 gi|291349746|gb|EFE76650.1| predicted protein [Streptomyces roseosporus NRRL 15998]
Length=107

 Score = 34.7 bits (78),  Expect = 5.0, Method: Compositional matrix adjust.
 Identities = 30/85 (36%), Positives = 43/85 (51%), Gaps = 11/85 (12%)

Query  1    MRTQVTLGKEELEL-LDRAAKASGASRSELIRRAIHRAYGTGSKQER---LAALDHSRGS  56
            ++T V L  +ELE+ LD  + A+G S++ELIRR I     +  + +R   L   D     
Sbjct  29   IKTTVYL-PDELEVRLDAESSATGVSKAELIRRGIAMLLDSAERPKRSRELPVFDS----  83

Query  57   WRGRDFTGTEYVDAIRGDLNERLAR  81
              GR  T  E  DA+   + ER AR
Sbjct  84   --GRSRTPDEMDDAVYEHIKERAAR  106


>gi|15608536|ref|NP_215914.1| hypothetical protein Rv1398c [Mycobacterium tuberculosis H37Rv]
 gi|31792592|ref|NP_855085.1| hypothetical protein Mb1433c [Mycobacterium bovis AF2122/97]
 gi|121637328|ref|YP_977551.1| hypothetical protein BCG_1459c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 73 more sequence titles
 Length=85

 Score = 34.3 bits (77),  Expect = 6.4, Method: Compositional matrix adjust.
 Identities = 23/62 (38%), Positives = 33/62 (54%), Gaps = 2/62 (3%)

Query  2   RTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQ--ERLAALDHSRGSWRG  59
           RT + L +E+   LD+ A   G SR+ELIR  ++RA  T        L A++ S G+ R 
Sbjct  3   RTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAGDDLASDLQAINDSFGTLRH  62

Query  60  RD  61
            D
Sbjct  63  LD  64


>gi|15840856|ref|NP_335893.1| CopG family transcriptional regulator [Mycobacterium tuberculosis 
CDC1551]
 gi|13881055|gb|AAK45707.1| transcriptional regulator, CopG family [Mycobacterium tuberculosis 
CDC1551]
Length=89

 Score = 34.3 bits (77),  Expect = 6.7, Method: Compositional matrix adjust.
 Identities = 23/62 (38%), Positives = 33/62 (54%), Gaps = 2/62 (3%)

Query  2   RTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQ--ERLAALDHSRGSWRG  59
           RT + L +E+   LD+ A   G SR+ELIR  ++RA  T        L A++ S G+ R 
Sbjct  7   RTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAGDDLASDLQAINDSFGTLRH  66

Query  60  RD  61
            D
Sbjct  67  LD  68


>gi|327539142|gb|EGF25772.1| ECF subfamily RNA polymerase sigma-70 factor [Rhodopirellula 
baltica WH47]
Length=173

 Score = 34.3 bits (77),  Expect = 6.8, Method: Compositional matrix adjust.
 Identities = 21/64 (33%), Positives = 30/64 (47%), Gaps = 7/64 (10%)

Query  16   DRAAKASGASRSELIRR-------AIHRAYGTGSKQERLAALDHSRGSWRGRDFTGTEYV  68
            D   + S  + SE +RR       + HR +G     +    LD S   W G+D TG E V
Sbjct  46   DNFVQHSDEATSEYLRRTAYNLLVSYHRKFGRIHLSDSPELLDESWQRWAGKDLTGNETV  105

Query  69   DAIR  72
            +A+R
Sbjct  106  EALR  109


>gi|32477676|ref|NP_870670.1| ECF subfamily RNA polymerase sigma-70 factor [Rhodopirellula 
baltica SH 1]
 gi|32448230|emb|CAD77747.1| probable sigma-70 factor (ECF subfamily) [Rhodopirellula baltica 
SH 1]
Length=193

 Score = 34.3 bits (77),  Expect = 6.9, Method: Compositional matrix adjust.
 Identities = 21/64 (33%), Positives = 30/64 (47%), Gaps = 7/64 (10%)

Query  16   DRAAKASGASRSELIRR-------AIHRAYGTGSKQERLAALDHSRGSWRGRDFTGTEYV  68
            D   + S  + SE +RR       + HR +G     +    LD S   W G+D TG E V
Sbjct  66   DNFVQHSDEATSEYLRRTAYNLLVSYHRKFGRIHLSDSPELLDESWQRWAGKDLTGNETV  125

Query  69   DAIR  72
            +A+R
Sbjct  126  EALR  129


>gi|222147862|ref|YP_002548819.1| hypothetical protein Avi_1141 [Agrobacterium vitis S4]
 gi|221734850|gb|ACM35813.1| Conserved hypothetical protein [Agrobacterium vitis S4]
Length=70

 Score = 33.9 bits (76),  Expect = 7.6, Method: Compositional matrix adjust.
 Identities = 24/72 (34%), Positives = 35/72 (49%), Gaps = 5/72 (6%)

Query  1   MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGR  60
           MRT + L  + +  LDR A+    SR+ LIR+A+        K +    LDH  G W+ +
Sbjct  1   MRTLIDLDDDAVVKLDRIARQEKISRAALIRQAVASLLEERQKPD----LDHGFGLWKNQ  56

Query  61  DFTGTEYVDAIR  72
              G  Y  A+R
Sbjct  57  P-DGLAYQQALR  67


>gi|300741224|ref|ZP_07071245.1| ribosomal large subunit pseudouridine synthase B [Rothia dentocariosa 
M567]
 gi|300380409|gb|EFJ76971.1| ribosomal large subunit pseudouridine synthase B [Rothia dentocariosa 
M567]
Length=357

 Score = 33.5 bits (75),  Expect = 9.8, Method: Composition-based stats.
 Identities = 19/48 (40%), Positives = 27/48 (57%), Gaps = 6/48 (12%)

Query  17  RAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGRDFTG  64
           RAA++ GA  S+  RRA HR Y +G       A  H RG +R  +++G
Sbjct  55  RAARSHGAGASKRDRRAPHRPYRSGE------AFPHERGEYRVNNYSG  96



Lambda     K      H
   0.317    0.132    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 131466506940


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40