BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2548
Length=125
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609685|ref|NP_217064.1| hypothetical protein Rv2548 [Mycoba... 246 6e-64
gi|289746331|ref|ZP_06505709.1| conserved hypothetical protein [... 125 2e-27
gi|289762717|ref|ZP_06522095.1| LOW QUALITY PROTEIN: conserved h... 111 3e-23
gi|94263719|ref|ZP_01287527.1| PilT protein-like [delta proteoba... 85.5 2e-15
gi|336120129|ref|YP_004574907.1| hypothetical protein MLP_44900 ... 84.3 6e-15
gi|340626411|ref|YP_004744863.1| hypothetical protein MCAN_14131... 82.4 2e-14
gi|167968437|ref|ZP_02550714.1| hypothetical protein MtubH3_1053... 82.0 3e-14
gi|15608535|ref|NP_215913.1| hypothetical protein Rv1397c [Mycob... 82.0 3e-14
gi|296165043|ref|ZP_06847598.1| PIN family toxin-antitoxin syste... 79.7 1e-13
gi|31792591|ref|NP_855084.1| hypothetical protein Mb1432c [Mycob... 79.3 2e-13
gi|158522354|ref|YP_001530224.1| PilT domain-containing protein ... 78.2 4e-13
gi|254550411|ref|ZP_05140858.1| toxin [Mycobacterium tuberculosi... 76.6 1e-12
gi|147676746|ref|YP_001210961.1| nucleic acid-binding protein [P... 73.6 9e-12
gi|301062220|ref|ZP_07202897.1| toxin-antitoxin system, toxin co... 73.6 1e-11
gi|87123524|ref|ZP_01079375.1| PIN domain protein [Synechococcus... 72.0 2e-11
gi|258515705|ref|YP_003191927.1| PilT protein domain-containing ... 71.2 5e-11
gi|149200535|ref|ZP_01877546.1| PIN domain protein [Lentisphaera... 70.1 1e-10
gi|333977596|ref|YP_004515541.1| PilT protein domain-containing ... 69.7 1e-10
gi|149200682|ref|ZP_01877675.1| PIN domain protein [Lentisphaera... 68.6 3e-10
gi|94263869|ref|ZP_01287674.1| PilT protein-like [delta proteoba... 67.8 5e-10
gi|165921452|ref|ZP_02219640.1| PIN domain protein [Coxiella bur... 67.8 5e-10
gi|292490330|ref|YP_003525769.1| PilT protein domain protein [Ni... 67.8 5e-10
gi|209364044|ref|YP_001424674.2| PIN domain protein [Coxiella bu... 67.0 1e-09
gi|161831233|ref|YP_001597087.1| PilT domain-containing protein ... 67.0 1e-09
gi|239905095|ref|YP_002951834.1| hypothetical protein DMR_04570 ... 65.5 2e-09
gi|297618119|ref|YP_003703278.1| PilT protein domain-containing ... 63.9 7e-09
gi|163785735|ref|ZP_02180247.1| PIN domain protein [Hydrogenivir... 62.4 2e-08
gi|225851391|ref|YP_002731625.1| PIN domain protein [Persephonel... 60.8 7e-08
gi|308274945|emb|CBX31544.1| hypothetical protein N47_E50560 [un... 58.9 2e-07
gi|333980746|ref|YP_004518691.1| PilT protein domain-containing ... 58.9 2e-07
gi|255039498|ref|YP_003090119.1| PilT protein domain-containing ... 57.8 5e-07
gi|333924148|ref|YP_004497728.1| PilT protein domain-containing ... 57.8 6e-07
gi|323703714|ref|ZP_08115354.1| PilT protein domain protein [Des... 56.6 1e-06
gi|300088644|ref|YP_003759166.1| PilT protein domain-containing ... 56.6 1e-06
gi|333977519|ref|YP_004515464.1| PilT protein domain-containing ... 55.8 2e-06
gi|158523145|ref|YP_001531015.1| PilT domain-containing protein ... 54.3 6e-06
gi|334342289|ref|YP_004547269.1| PilT protein domain-containing ... 53.5 1e-05
gi|172035499|ref|YP_001802000.1| hypothetical protein cce_0583 [... 52.4 2e-05
gi|345303231|ref|YP_004825133.1| PilT protein domain-containing ... 52.4 2e-05
gi|332662727|ref|YP_004445515.1| PilT protein domain-containing ... 52.0 3e-05
gi|229578488|ref|YP_002836886.1| PilT protein domain protein [Su... 51.6 3e-05
gi|153872477|ref|ZP_02001357.1| PIN domain protein [Beggiatoa sp... 51.6 4e-05
gi|91204386|emb|CAJ70886.1| conserved hypothetical protein [Cand... 51.2 5e-05
gi|323474280|gb|ADX84886.1| VapC-type toxin [Sulfolobus islandic... 51.2 5e-05
gi|333980719|ref|YP_004518664.1| PilT protein domain-containing ... 50.8 6e-05
gi|284997172|ref|YP_003418939.1| twitching mobility protein PilT... 50.8 6e-05
gi|225873269|ref|YP_002754728.1| PIN domain protein [Acidobacter... 50.8 7e-05
gi|227829525|ref|YP_002831304.1| twitching mobility protein PilT... 50.4 8e-05
gi|312889611|ref|ZP_07749161.1| PilT protein domain protein [Muc... 50.4 9e-05
gi|153873976|ref|ZP_02002370.1| PIN domain protein [Beggiatoa sp... 49.7 1e-04
>gi|15609685|ref|NP_217064.1| hypothetical protein Rv2548 [Mycobacterium tuberculosis H37Rv]
gi|15842084|ref|NP_337121.1| hypothetical protein MT2624 [Mycobacterium tuberculosis CDC1551]
gi|31793731|ref|NP_856224.1| hypothetical protein Mb2578 [Mycobacterium bovis AF2122/97]
79 more sequence titles
Length=125
Score = 246 bits (629), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 124/125 (99%), Positives = 125/125 (100%), Gaps = 0/125 (0%)
Query 1 VKLIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAGVRESELAALEAFFS 60
+KLIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAGVRESELAALEAFFS
Sbjct 1 MKLIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAGVRESELAALEAFFS 60
Query 61 AVVWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPMFPD 120
AVVWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPMFPD
Sbjct 61 AVVWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPMFPD 120
Query 121 LQPPY 125
LQPPY
Sbjct 121 LQPPY 125
>gi|289746331|ref|ZP_06505709.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289686859|gb|EFD54347.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
Length=66
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/66 (99%), Positives = 66/66 (100%), Gaps = 0/66 (0%)
Query 1 VKLIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAGVRESELAALEAFFS 60
+KLIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAGVRESELAALEAFFS
Sbjct 1 MKLIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAGVRESELAALEAFFS 60
Query 61 AVVWTL 66
AVVWTL
Sbjct 61 AVVWTL 66
>gi|289762717|ref|ZP_06522095.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium
tuberculosis GM 1503]
gi|289710223|gb|EFD74239.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium
tuberculosis GM 1503]
Length=128
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/98 (68%), Positives = 69/98 (71%), Gaps = 7/98 (7%)
Query 1 VKLIDTTIAVDHLRGEPAAAVLLAELINNG-EEIAASELVRFELLAGVRESELAALEAFF 59
+KLIDTTIAVDHLRGEPAAAVLL +ELVRFELLAGVR ALEAF
Sbjct 1 MKLIDTTIAVDHLRGEPAAAVLLRRTDKTTVRRSRPAELVRFELLAGVRGKRTRALEAFL 60
Query 60 S-AVVWTLVTEDIARIGGRLARRYRSSH-----RGIDD 91
S WTLVTEDIARIGGRLARRYRSSH RG+ D
Sbjct 61 SRQWWWTLVTEDIARIGGRLARRYRSSHPRYRRRGLPD 98
>gi|94263719|ref|ZP_01287527.1| PilT protein-like [delta proteobacterium MLMS-1]
gi|93455918|gb|EAT06077.1| PilT protein-like [delta proteobacterium MLMS-1]
Length=128
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/124 (44%), Positives = 72/124 (59%), Gaps = 5/124 (4%)
Query 3 LIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAGVRES-ELAALEAFFSA 61
L+DT + VD LRG+ AA L+ + + I S +V EL AGVR + ELA L+ +
Sbjct 6 LLDTDVMVDFLRGQSAAVSLVK---THADRIILSSIVIAELYAGVRSADELATLDRLVAL 62
Query 62 VVWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPMFPDL 121
VT + AR G +RY SH G+ D +IAATA ADLLT N++H+PMF L
Sbjct 63 FRNVPVTAENARTAGLYKKRYTKSH-GVGLADCIIAATAENEQADLLTLNIKHYPMFKGL 121
Query 122 QPPY 125
+PPY
Sbjct 122 KPPY 125
>gi|336120129|ref|YP_004574907.1| hypothetical protein MLP_44900 [Microlunatus phosphovorus NM-1]
gi|334687919|dbj|BAK37504.1| hypothetical protein MLP_44900 [Microlunatus phosphovorus NM-1]
Length=126
Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/123 (44%), Positives = 67/123 (55%), Gaps = 1/123 (0%)
Query 3 LIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAGVRESELAALEAFFSAV 62
L+DT + + HL G AA L + + S + EL+ G+R SE + +++
Sbjct 3 LVDTDVLIAHLGGVEAARRWLRS-ARDLAPLHVSVVTIAELIGGMRSSERREVWTLLASL 61
Query 63 VWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPMFPDLQ 122
VTE IAR G R Y H GI DYLIAATA ADL T NVRHFPMFPDL+
Sbjct 62 HAEPVTEVIARRAGEFRRNYARGHSGIGIADYLIAATADYHGADLQTLNVRHFPMFPDLE 121
Query 123 PPY 125
PP+
Sbjct 122 PPF 124
>gi|340626411|ref|YP_004744863.1| hypothetical protein MCAN_14131 [Mycobacterium canettii CIPT
140010059]
gi|340004601|emb|CCC43745.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=133
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/123 (43%), Positives = 68/123 (56%), Gaps = 1/123 (0%)
Query 3 LIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAGVRESELAALEAFFSAV 62
L+D+ + + HLRG AA L +G +A S + EL+ G+R +E + ++
Sbjct 3 LVDSDVLIAHLRGVVAARDWLVSARKDGP-LAISVVSTAELIGGMRTAERREVWRLLASF 61
Query 63 VWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPMFPDLQ 122
TE IAR G + RRYR SH I DYLIAATA V L T NVRHFPMF L+
Sbjct 62 RVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQGLQLATLNVRHFPMFEQLK 121
Query 123 PPY 125
PP+
Sbjct 122 PPF 124
>gi|167968437|ref|ZP_02550714.1| hypothetical protein MtubH3_10531 [Mycobacterium tuberculosis
H37Ra]
Length=138
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/123 (43%), Positives = 68/123 (56%), Gaps = 1/123 (0%)
Query 3 LIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAGVRESELAALEAFFSAV 62
L+D+ + + HLRG AA L +G +A S + EL+ G+R +E + ++
Sbjct 8 LVDSDVLIAHLRGVVAARDWLVSARKDGP-LAISVVSTAELIGGMRTAERREVWRLLASF 66
Query 63 VWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPMFPDLQ 122
TE IAR G + RRYR SH I DYLIAATA V D L T NV HFPMF L+
Sbjct 67 RVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQLK 126
Query 123 PPY 125
PP+
Sbjct 127 PPF 129
>gi|15608535|ref|NP_215913.1| hypothetical protein Rv1397c [Mycobacterium tuberculosis H37Rv]
gi|15840855|ref|NP_335892.1| hypothetical protein MT1441 [Mycobacterium tuberculosis CDC1551]
gi|148661188|ref|YP_001282711.1| hypothetical protein MRA_1406 [Mycobacterium tuberculosis H37Ra]
56 more sequence titles
Length=133
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/123 (43%), Positives = 68/123 (56%), Gaps = 1/123 (0%)
Query 3 LIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAGVRESELAALEAFFSAV 62
L+D+ + + HLRG AA L +G +A S + EL+ G+R +E + ++
Sbjct 3 LVDSDVLIAHLRGVVAARDWLVSARKDGP-LAISVVSTAELIGGMRTAERREVWRLLASF 61
Query 63 VWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPMFPDLQ 122
TE IAR G + RRYR SH I DYLIAATA V D L T NV HFPMF L+
Sbjct 62 RVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQLK 121
Query 123 PPY 125
PP+
Sbjct 122 PPF 124
>gi|296165043|ref|ZP_06847598.1| PIN family toxin-antitoxin system [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295899691|gb|EFG79142.1| PIN family toxin-antitoxin system [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=131
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/125 (41%), Positives = 69/125 (56%), Gaps = 1/125 (0%)
Query 1 VKLIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAGVRESELAALEAFFS 60
V L+D+ I + HLRG AA L + G +A S + EL+ G+R +E + +
Sbjct 6 VILVDSDILIAHLRGLDAARHWLVQARQEGP-LAISVVSIAELVGGMRSAERREVWRLLA 64
Query 61 AVVWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPMFPD 120
+ TE IAR G RRYR+SH I DYL+AATA V T NV+HFPMF +
Sbjct 65 SFRTEPATEIIARRAGDFRRRYRASHSSIGLGDYLLAATADVKGYQAATLNVKHFPMFKN 124
Query 121 LQPPY 125
L+PP+
Sbjct 125 LRPPF 129
>gi|31792591|ref|NP_855084.1| hypothetical protein Mb1432c [Mycobacterium bovis AF2122/97]
gi|121637327|ref|YP_977550.1| hypothetical protein BCG_1458c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224989802|ref|YP_002644489.1| hypothetical protein JTY_1433 [Mycobacterium bovis BCG str. Tokyo
172]
18 more sequence titles
Length=133
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/123 (42%), Positives = 67/123 (55%), Gaps = 1/123 (0%)
Query 3 LIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAGVRESELAALEAFFSAV 62
L+D+ + + HLRG AA L +G +A S + EL+ G+R +E + ++
Sbjct 3 LVDSDVLIAHLRGVVAARDWLVSARKDGP-LAISVVSTAELIGGMRTAERREVWRLLASF 61
Query 63 VWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPMFPDLQ 122
TE IAR G + RRYR SH I DYLIAATA V L T NV HFPMF L+
Sbjct 62 RVQPATEVIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQGLQLATLNVWHFPMFEQLK 121
Query 123 PPY 125
PP+
Sbjct 122 PPF 124
>gi|158522354|ref|YP_001530224.1| PilT domain-containing protein [Desulfococcus oleovorans Hxd3]
gi|158511180|gb|ABW68147.1| PilT protein domain protein [Desulfococcus oleovorans Hxd3]
Length=133
Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/124 (40%), Positives = 69/124 (56%), Gaps = 5/124 (4%)
Query 3 LIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAGVR-ESELAALEAFFSA 61
L+DT + VD RG A + + I S +V EL AGV+ E+E AAL+ FFS
Sbjct 12 LVDTDVLVDFFRGHEKAGAFVN---THHARIILSPIVIAELYAGVKGEAEQAALKDFFSL 68
Query 62 VVWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPMFPDL 121
++ +I + GG R Y SH G+ D ++AATA + +A+L T N RH+PMF L
Sbjct 69 FPVVPISAEIGKAGGLYRRDYGKSH-GVGLADAILAATAKIENAELKTLNTRHYPMFKGL 127
Query 122 QPPY 125
+P Y
Sbjct 128 KPAY 131
>gi|254550411|ref|ZP_05140858.1| toxin [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
Length=126
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/116 (44%), Positives = 63/116 (55%), Gaps = 1/116 (0%)
Query 10 VDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAGVRESELAALEAFFSAVVWTLVTE 69
+ HLRG AA L +G +A S + EL+ G+R +E + ++ TE
Sbjct 3 IAHLRGVVAARDWLVSARKDGP-LAISVVSTAELIGGMRTAERREVWRLLASFRVQPATE 61
Query 70 DIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPMFPDLQPPY 125
IAR G + RRYR SH I DYLIAATA V D L T NV HFPMF L+PP+
Sbjct 62 VIARRAGDMMRRYRRSHNRIGLGDYLIAATADVQDLQLATLNVWHFPMFEQLKPPF 117
>gi|147676746|ref|YP_001210961.1| nucleic acid-binding protein [Pelotomaculum thermopropionicum
SI]
gi|146272843|dbj|BAF58592.1| predicted nucleic acid-binding protein [Pelotomaculum thermopropionicum
SI]
Length=145
Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/119 (39%), Positives = 67/119 (57%), Gaps = 7/119 (5%)
Query 3 LIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAGVRESELAALE----AF 58
L+DT++ VDHLR A L N+G +A S + EL AG + E A+E F
Sbjct 5 LLDTSVLVDHLREYKPATEFLETAFNSGAVVAISAVTEMELYAG-KSMENPAIEEDVLKF 63
Query 59 FSAVVWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPM 117
VT +IAR G + RRYR H+G+ +D +IA+TA+ +A+L+T N++HF M
Sbjct 64 LKLFKTLPVTSNIARQAGLMLRRYR--HQGLTPIDAIIASTAMEHNANLITRNIKHFRM 120
>gi|301062220|ref|ZP_07202897.1| toxin-antitoxin system, toxin component, PIN family [delta proteobacterium
NaphS2]
gi|300443652|gb|EFK07740.1| toxin-antitoxin system, toxin component, PIN family [delta proteobacterium
NaphS2]
Length=127
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/124 (41%), Positives = 67/124 (55%), Gaps = 5/124 (4%)
Query 3 LIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAGVR-ESELAALEAFFSA 61
L DT + VD RG P A + E + I S +V EL AGV+ E+E AL+ F S
Sbjct 6 LPDTDVLVDFFRGFPRAVDFVNEY---NDRIILSSIVVAELYAGVKGEAEQIALQRFISL 62
Query 62 VVWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPMFPDL 121
+ I + GG R Y SH G+ D ++AATA V +A+L T N RH+PMF +L
Sbjct 63 FRVVPIDATIGKAGGLYRRDYGKSH-GVGLADAILAATAEVENAELRTLNTRHYPMFENL 121
Query 122 QPPY 125
+P Y
Sbjct 122 KPAY 125
>gi|87123524|ref|ZP_01079375.1| PIN domain protein [Synechococcus sp. RS9917]
gi|86169244|gb|EAQ70500.1| PIN domain protein [Synechococcus sp. RS9917]
Length=130
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/124 (41%), Positives = 67/124 (55%), Gaps = 5/124 (4%)
Query 3 LIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAGVRESE-LAALEAFFSA 61
++DT + +D+LR +P A L + + +AAS + EL AGVR+ E L+AF A
Sbjct 6 VVDTDVLIDYLRDQPQAVAFLE---GSDQVLAASVITVAELYAGVRDGEERKRLDAFVEA 62
Query 62 VVWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPMFPDL 121
+ + A + G R+Y SH G D LIAATA V L+T N RHFPM PDL
Sbjct 63 FDVIPLNDKAAVVAGLWRRQYGRSH-GTGLADALIAATADGVGGTLVTLNQRHFPMLPDL 121
Query 122 QPPY 125
PY
Sbjct 122 LIPY 125
>gi|258515705|ref|YP_003191927.1| PilT protein domain-containing protein [Desulfotomaculum acetoxidans
DSM 771]
gi|257779410|gb|ACV63304.1| PilT protein domain protein [Desulfotomaculum acetoxidans DSM
771]
Length=136
Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/123 (39%), Positives = 63/123 (52%), Gaps = 5/123 (4%)
Query 3 LIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAG----VRESELAALEAF 58
++DT I +DHLRG P A L E+ N E S +V ELLA + E L A+
Sbjct 4 VVDTNIIIDHLRGIPQATKQLQEIENGNFEGLISTVVIMELLAAPKPKISEKRLVAINNL 63
Query 59 FSAVVWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPMF 118
V IA + G L +YR+SH G++ +D LI ATA+V DA L T + +HF
Sbjct 64 LQIFEHLPVDGQIATVAGNLLSQYRASH-GLEPMDALIGATALVNDAVLFTLSKKHFKFI 122
Query 119 PDL 121
L
Sbjct 123 KGL 125
>gi|149200535|ref|ZP_01877546.1| PIN domain protein [Lentisphaera araneosa HTCC2155]
gi|149136384|gb|EDM24826.1| PIN domain protein [Lentisphaera araneosa HTCC2155]
Length=126
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/120 (38%), Positives = 64/120 (54%), Gaps = 7/120 (5%)
Query 3 LIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAGVR-ESELAALEAFFSA 61
L+DT I +D LRG+ A ++ N E I S + EL AGV+ +SE L +F
Sbjct 7 LVDTCIIIDFLRGKEGAKEFIS---NELENICISVVTVAELYAGVKGKSEETQLGSFLGL 63
Query 62 VVWTLVTEDIARIGGRLARRYRSSHR-GIDDVDYLIAATAIVVDADLLTTNVRHFPMFPD 120
+ +DI+ G L +Y SH G+ D +IAATA+ D +L+T N +HFPM D
Sbjct 64 FSMIELNKDISISSGYLKNKYYKSHNAGLADC--MIAATALEYDFNLVTNNFKHFPMVED 121
>gi|333977596|ref|YP_004515541.1| PilT protein domain-containing protein [Desulfotomaculum kuznetsovii
DSM 6115]
gi|333821077|gb|AEG13740.1| PilT protein domain protein [Desulfotomaculum kuznetsovii DSM
6115]
Length=129
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/119 (38%), Positives = 62/119 (53%), Gaps = 2/119 (1%)
Query 3 LIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAGVRESELAALEAFFSAV 62
L+DTTI +D LRG A +L L+ G +A + E+ +G R EL +E FF A+
Sbjct 7 LLDTTILIDFLRGRKEAIDMLNRLVEAGP-LACCPVTVAEVFSGARPEELPKIEEFFEAL 65
Query 63 VWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPMFPDL 121
++ V AR G R Y + D +IAA A+ L+T NVRHFPM P+L
Sbjct 66 LFYPVGYKTARRAGLYRREYGKKGITLSISDTIIAAVAVENSLTLVTKNVRHFPM-PEL 123
>gi|149200682|ref|ZP_01877675.1| PIN domain protein [Lentisphaera araneosa HTCC2155]
gi|149136226|gb|EDM24686.1| PIN domain protein [Lentisphaera araneosa HTCC2155]
Length=127
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/123 (37%), Positives = 67/123 (55%), Gaps = 13/123 (10%)
Query 3 LIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAGVR----ESELAALEAF 58
L+DT I +D LRG+ ++ N E I+ S + EL AGV+ E++LA+
Sbjct 7 LVDTCIIIDFLRGKEGGKEFIS---NELENISISVVTVAELYAGVKGKNEETQLASFLGL 63
Query 59 FSAVVWTLVTEDIARIGGRLARRYRSSHR-GIDDVDYLIAATAIVVDADLLTTNVRHFPM 117
FS + + +DI+ G L +Y SH G+ D +IAATA+ D +L+T N +HFPM
Sbjct 64 FSIIE---LNKDISISSGYLKNKYYKSHNAGLADC--MIAATALEYDFNLVTNNFKHFPM 118
Query 118 FPD 120
D
Sbjct 119 VED 121
>gi|94263869|ref|ZP_01287674.1| PilT protein-like [delta proteobacterium MLMS-1]
gi|94265358|ref|ZP_01289113.1| PilT protein-like [delta proteobacterium MLMS-1]
gi|93454168|gb|EAT04495.1| PilT protein-like [delta proteobacterium MLMS-1]
gi|93455790|gb|EAT05961.1| PilT protein-like [delta proteobacterium MLMS-1]
Length=128
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/124 (38%), Positives = 62/124 (50%), Gaps = 5/124 (4%)
Query 3 LIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAGVRES-ELAALEAFFSA 61
L+DT I +D+LR P A L +++ S L EL AG R E L F +A
Sbjct 5 LLDTNILIDYLRDHPQAVKYLE---TGSGDMSISALTVAELHAGARNDLEKQKLREFTTA 61
Query 62 VVWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPMFPDL 121
I +GG +Y SH GID +D LIAAT++V L+T N +HFPM ++
Sbjct 62 FEVIPADSAICEMGGGFRAKYAPSH-GIDLIDGLIAATSVVCKVPLVTLNKKHFPMLGNV 120
Query 122 QPPY 125
PY
Sbjct 121 VIPY 124
>gi|165921452|ref|ZP_02219640.1| PIN domain protein [Coxiella burnetii RSA 334]
gi|165916767|gb|EDR35371.1| PIN domain protein [Coxiella burnetii RSA 334]
Length=128
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/130 (37%), Positives = 63/130 (49%), Gaps = 15/130 (11%)
Query 3 LIDTTIAVDHLRGEPAAAVLLAELINNGEEIAA------SELVRFELLAGVRESE-LAAL 55
L+DT I +D LRGE +A + E+ AA S L EL G R+ E L
Sbjct 4 LLDTDIIIDFLRGEESAVKFI-------EKTAAKVVCHISTLTIAELYVGARDGEEYGVL 56
Query 56 EAFFSAVVWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHF 115
E F V+ IA++GG R Y SH G D +IAAT + A L+T N +H+
Sbjct 57 ERFLQIFTAIEVSPQIAQLGGLFRRDYGKSH-GTGLADAIIAATTQCISAKLVTLNKKHY 115
Query 116 PMFPDLQPPY 125
PM ++ PY
Sbjct 116 PMLKNIHVPY 125
>gi|292490330|ref|YP_003525769.1| PilT protein domain protein [Nitrosococcus halophilus Nc4]
gi|291578925|gb|ADE13382.1| PilT protein domain protein [Nitrosococcus halophilus Nc4]
Length=129
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/124 (39%), Positives = 63/124 (51%), Gaps = 5/124 (4%)
Query 3 LIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAGVRES-ELAALEAFFSA 61
L+DT + +D+LRG P A ++ L E + S + EL AGVRE E L AF A
Sbjct 6 LLDTDVLIDYLRGVPVA---VSYLEGCAEVLLISVITVTELFAGVREGRERTTLSAFLGA 62
Query 62 VVWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPMFPDL 121
+ IA GG R Y SH G D IAATA + A ++T N +HFPM ++
Sbjct 63 FEVVPLDRPIAEKGGLYRRDYGKSH-GTGLADAFIAATAELCQAKVVTLNRKHFPMLKEV 121
Query 122 QPPY 125
PY
Sbjct 122 LVPY 125
>gi|209364044|ref|YP_001424674.2| PIN domain protein [Coxiella burnetii Dugway 5J108-111]
gi|212212378|ref|YP_002303314.1| PIN domain protein [Coxiella burnetii CbuG_Q212]
gi|215919145|ref|NP_820232.2| twitching motility protein PilT [Coxiella burnetii RSA 493]
gi|206584029|gb|AAO90746.2| PIN domain protein [Coxiella burnetii RSA 493]
gi|207081977|gb|ABS77259.2| PIN domain protein [Coxiella burnetii Dugway 5J108-111]
gi|212010788|gb|ACJ18169.1| PIN domain protein [Coxiella burnetii CbuG_Q212]
Length=130
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/130 (36%), Positives = 63/130 (49%), Gaps = 15/130 (11%)
Query 3 LIDTTIAVDHLRGEPAAAVLLAELINNGEEIAA------SELVRFELLAGVRESE-LAAL 55
L+DT I +D LRG+ +A + E+ AA S L EL G R+ E L
Sbjct 6 LLDTDIIIDFLRGQESAVKFI-------EKTAAKVVCHISTLTIAELYVGARDGEEYGVL 58
Query 56 EAFFSAVVWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHF 115
E F V+ IA++GG R Y SH G D +IAAT + A L+T N +H+
Sbjct 59 ERFLQIFTAIEVSPQIAQLGGLFRRDYGKSH-GTGLADAIIAATTQCISAKLVTLNKKHY 117
Query 116 PMFPDLQPPY 125
PM ++ PY
Sbjct 118 PMLKNIHVPY 127
>gi|161831233|ref|YP_001597087.1| PilT domain-containing protein [Coxiella burnetii RSA 331]
gi|161763100|gb|ABX78742.1| PIN domain protein [Coxiella burnetii RSA 331]
Length=128
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/130 (36%), Positives = 63/130 (49%), Gaps = 15/130 (11%)
Query 3 LIDTTIAVDHLRGEPAAAVLLAELINNGEEIAA------SELVRFELLAGVRESE-LAAL 55
L+DT I +D LRG+ +A + E+ AA S L EL G R+ E L
Sbjct 4 LLDTDIIIDFLRGQESAVKFI-------EKTAAKVVCHISTLTIAELYVGARDGEEYGVL 56
Query 56 EAFFSAVVWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHF 115
E F V+ IA++GG R Y SH G D +IAAT + A L+T N +H+
Sbjct 57 ERFLQIFTAIEVSPQIAQLGGLFRRDYGKSH-GTGLADAIIAATTQCISAKLVTLNKKHY 115
Query 116 PMFPDLQPPY 125
PM ++ PY
Sbjct 116 PMLKNIHVPY 125
>gi|239905095|ref|YP_002951834.1| hypothetical protein DMR_04570 [Desulfovibrio magneticus RS-1]
gi|239794959|dbj|BAH73948.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length=133
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/127 (40%), Positives = 68/127 (54%), Gaps = 4/127 (3%)
Query 1 VKLIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAGVRES-ELAALEAFF 59
V L DT + +D+ RG+P AA +L +G A S +V ELLAG R+ E L+AF
Sbjct 9 VVLFDTDVLIDYGRGDPHAAAVLDAAHQDGIS-AVSVIVHCELLAGCRDKREQGILDAFM 67
Query 60 SAVVWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPMFP 119
+ + +I+ L RRYR SH G+ D LIAATA+ D L+T N + +
Sbjct 68 AGFRCVHIDANISGGALGLLRRYRLSH-GLRLPDALIAATALAHDWPLVTKNQKDYRFIE 126
Query 120 DLQ-PPY 125
LQ PPY
Sbjct 127 GLQLPPY 133
>gi|297618119|ref|YP_003703278.1| PilT protein domain-containing protein [Syntrophothermus lipocalidus
DSM 12680]
gi|297145956|gb|ADI02713.1| PilT protein domain protein [Syntrophothermus lipocalidus DSM
12680]
Length=132
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/115 (34%), Positives = 64/115 (56%), Gaps = 1/115 (0%)
Query 3 LIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAGVRESELAALEAFFSAV 62
L+DTT +D LRG+ LL ++++ +AA + E+ AG +E EL +E F S++
Sbjct 11 LLDTTALIDFLRGDRQTHALL-QVLSEKAHLAACPITVAEVFAGAKEKELPGVERFLSSL 69
Query 63 VWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPM 117
+ + + +R+ GR Y + + D LIAA A++ + L+T N RH+PM
Sbjct 70 KFYSIDYEASRLAGRWRYTYARAGVTLSLPDTLIAAVAVLNNLALVTANRRHYPM 124
>gi|163785735|ref|ZP_02180247.1| PIN domain protein [Hydrogenivirga sp. 128-5-R1-1]
gi|159878996|gb|EDP72988.1| PIN domain protein [Hydrogenivirga sp. 128-5-R1-1]
Length=122
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/121 (34%), Positives = 62/121 (52%), Gaps = 4/121 (3%)
Query 3 LIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAG-VRESELAALEAFFSA 61
++DT I ++ L+G LL + N E A S + EL G + + EL ++ F +
Sbjct 3 ILDTNIIIELLKGNTETKELLKNI--NEENFAISIITSMELYYGAINKRELNKIKKFLKS 60
Query 62 VVWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPMFPDL 121
++ E+I++I L +Y SH G++ D LIAAT+I D LLT N + F L
Sbjct 61 FNLLVINEEISKIALDLIEKYSKSH-GLEIPDALIAATSIYYDVPLLTYNKKDFKYIETL 119
Query 122 Q 122
Q
Sbjct 120 Q 120
>gi|225851391|ref|YP_002731625.1| PIN domain protein [Persephonella marina EX-H1]
gi|225644974|gb|ACO03160.1| PIN domain protein [Persephonella marina EX-H1]
Length=122
Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/121 (34%), Positives = 61/121 (51%), Gaps = 4/121 (3%)
Query 3 LIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAG-VRESELAALEAFFSA 61
++DT I ++ +G LL N E + S + EL G + + EL ++ F +
Sbjct 3 ILDTNIIIELFKGNTETRELLES--RNEENFSISIITGMELYYGAINKRELNKIKKFLKS 60
Query 62 VVWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPMFPDL 121
+ E+I+RI L +Y SH G++ D LIAAT+I DA LLT N + F DL
Sbjct 61 FNLLAINEEISRISLELIEKYSKSH-GLEIPDALIAATSIYYDAPLLTYNKKDFKYIKDL 119
Query 122 Q 122
+
Sbjct 120 K 120
>gi|308274945|emb|CBX31544.1| hypothetical protein N47_E50560 [uncultured Desulfobacterium
sp.]
Length=127
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/115 (32%), Positives = 58/115 (51%), Gaps = 3/115 (2%)
Query 3 LIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAGVRESELAALEAFFSAV 62
+IDT + + HLRG +L E + + S + E+ AG+++ E E ++
Sbjct 5 VIDTDVLILHLRGNKQIKEMLKE-VAQSSLLCCSAITIGEIYAGMKDEEREKTELLLDSL 63
Query 63 VWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPM 117
V IA + G R +S H +DD LIAAT ++ A L+T N++H+PM
Sbjct 64 PVFEVDRKIAELAGFYKRSIKSHHLELDDC--LIAATCVLKKAVLITGNIKHYPM 116
>gi|333980746|ref|YP_004518691.1| PilT protein domain-containing protein [Desulfotomaculum kuznetsovii
DSM 6115]
gi|333824227|gb|AEG16890.1| PilT protein domain protein [Desulfotomaculum kuznetsovii DSM
6115]
Length=133
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/123 (35%), Positives = 62/123 (51%), Gaps = 7/123 (5%)
Query 3 LIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAGV----RESELAALEAF 58
++DT++ +DHLR A L + +G S + EL AG R +E A++
Sbjct 5 MLDTSVLIDHLRNYKPATEFLETVFGSGIPAIISAVTEMELYAGKSLQNRTAE-DAVQKL 63
Query 59 FSAVVWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPMF 118
+ VT IAR G L R+YR +G+ VD +IA+TA+ A L+T N RHF M
Sbjct 64 LELLDAVPVTSGIARQAGILLRQYRP--KGLTPVDAIIASTAMEQKATLITRNTRHFRMI 121
Query 119 PDL 121
L
Sbjct 122 DGL 124
>gi|255039498|ref|YP_003090119.1| PilT protein domain-containing protein [Dyadobacter fermentans
DSM 18053]
gi|254952254|gb|ACT96954.1| PilT protein domain protein [Dyadobacter fermentans DSM 18053]
Length=126
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/123 (35%), Positives = 64/123 (53%), Gaps = 8/123 (6%)
Query 3 LIDTTIAVDHLRGEPAAAVLLAELIN--NGEEIAASELVRFELLAG-VRESELAALEAFF 59
L+DT I +D+LRG+ AA E I+ N A + +V EL G + +EL +
Sbjct 3 LLDTNILIDYLRGKQAAI----EFIDSANKRRFAVNTVVVLELYNGCLNRAELTKIRRLL 58
Query 60 SAVVWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPMFP 119
+ + + E IA+ R+ Y SH + D LIAATA+V + +L T N++ F M P
Sbjct 59 NGFMHFELNEAIAQAATRIGHSYALSH-SVSAPDALIAATALVYNLELRTANLKDFRMIP 117
Query 120 DLQ 122
L+
Sbjct 118 GLK 120
>gi|333924148|ref|YP_004497728.1| PilT protein domain-containing protein [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|333749709|gb|AEF94816.1| PilT protein domain protein [Desulfotomaculum carboxydivorans
CO-1-SRB]
Length=132
Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/121 (35%), Positives = 57/121 (48%), Gaps = 3/121 (2%)
Query 3 LIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAG--VRESELAALEAFFS 60
+ DT I +DHL+G A L + E S + ELL+ + E A+ +
Sbjct 4 VFDTNIIIDHLKGSAQAREQLKNIEGGVFEGYISTVTIMELLSAPKISEQRYQAIRSLLE 63
Query 61 AVVWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPMFPD 120
V IA GRL +Y SSH G++ +D LI ATAIV +A L T N +HF
Sbjct 64 IFEHIDVDRKIAATAGRLLSKYHSSH-GLEPMDALIGATAIVNEAVLFTLNKKHFRFIEG 122
Query 121 L 121
L
Sbjct 123 L 123
>gi|323703714|ref|ZP_08115354.1| PilT protein domain protein [Desulfotomaculum nigrificans DSM
574]
gi|323531302|gb|EGB21201.1| PilT protein domain protein [Desulfotomaculum nigrificans DSM
574]
Length=132
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/121 (34%), Positives = 57/121 (48%), Gaps = 3/121 (2%)
Query 3 LIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAG--VRESELAALEAFFS 60
+ DT I +DHL+G A L + E S + ELL+ + E A+ +
Sbjct 4 VFDTNIIIDHLKGSAQAREQLKNIEGGVFEGYISTVTIMELLSAPKISEQRYQAIRSLLE 63
Query 61 AVVWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPMFPD 120
V IA GRL +Y SSH G++ +D LI ATA+V +A L T N +HF
Sbjct 64 IFEHIDVDRKIAATAGRLLSKYHSSH-GLEPMDALIGATALVNEAVLFTLNKKHFRFIEG 122
Query 121 L 121
L
Sbjct 123 L 123
>gi|300088644|ref|YP_003759166.1| PilT protein domain-containing protein [Dehalogenimonas lykanthroporepellens
BL-DC-9]
gi|299528377|gb|ADJ26845.1| PilT protein domain protein [Dehalogenimonas lykanthroporepellens
BL-DC-9]
Length=136
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/114 (35%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Query 3 LIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAGVRESELAALEAFFSAV 62
++DT IA+D LR A LL + G +A S L E+ G++ E +AF +
Sbjct 12 IVDTDIAIDFLRKRQYARQLLNRWADEGL-LAVSALTHLEIYQGMKPGEEVNTDAFLDGL 70
Query 63 VWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFP 116
+ V +AR G + RS I D +IAATA+++ LLT NV H+P
Sbjct 71 ISLPVDIPVARQAGAMLGVLRSKGITIGMADAIIAATALLLGVPLLTNNVDHYP 124
>gi|333977519|ref|YP_004515464.1| PilT protein domain-containing protein [Desulfotomaculum kuznetsovii
DSM 6115]
gi|333821000|gb|AEG13663.1| PilT protein domain protein [Desulfotomaculum kuznetsovii DSM
6115]
Length=134
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/127 (37%), Positives = 66/127 (52%), Gaps = 10/127 (7%)
Query 3 LIDTTIAVDHLRG--EPAAAVLLAELINNGEEIAASELVRFELLAGVR-ESELAALEAFF 59
LIDT + +DHL G P A L +++ +G A S +V ELL G R E AA+E
Sbjct 4 LIDTCVLIDHLTGRLSPDAGAWLEQVVASGSA-ATSVIVYHELLYGARTEKARAAVEKLL 62
Query 60 SAVVWTLVTEDIARIGGRLA---RRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFP 116
A W ++ D R+ GR A R + R + D LIAATA + + ++T+NV+ FP
Sbjct 63 EA--WEILPVD-RRVAGRAAEIRRDQAAKGRTLGMADCLIAATAELRNLKVVTSNVKDFP 119
Query 117 MFPDLQP 123
+ P
Sbjct 120 TVETVLP 126
>gi|158523145|ref|YP_001531015.1| PilT domain-containing protein [Desulfococcus oleovorans Hxd3]
gi|158511971|gb|ABW68938.1| PilT protein domain protein [Desulfococcus oleovorans Hxd3]
Length=129
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/120 (31%), Positives = 62/120 (52%), Gaps = 3/120 (2%)
Query 3 LIDTTIAVDHLRGEPAAAVLLAELINNGE-EIAASELVRFELLAGVRESELAALEAFFSA 61
ID+ + + HLRGE A L+ +L + + ++ + R E++ +R +E F S
Sbjct 4 FIDSDVLIWHLRGERKALNLIRKLRDKEQLDLWTGVMQRAEVIFFMRPNEEEDTLLFLSQ 63
Query 62 VVWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPMFPDL 121
V + I G L R++ H GID D ++AAT + + + T NV+H+PM PD+
Sbjct 64 FQTAPVDQKIIDKAGELYRKWNPRH-GIDINDAILAATTMQTNGRIYTLNVKHYPM-PDV 121
>gi|334342289|ref|YP_004547269.1| PilT protein domain-containing protein [Desulfotomaculum ruminis
DSM 2154]
gi|334093643|gb|AEG61983.1| PilT protein domain protein [Desulfotomaculum ruminis DSM 2154]
Length=135
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/115 (35%), Positives = 57/115 (50%), Gaps = 3/115 (2%)
Query 3 LIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAGVRESE--LAALEAFFS 60
+ DT I +DHL+ P A L + N E S + ELL+ R SE + +
Sbjct 4 IFDTNIIIDHLKRLPQAQEQLRHVENGVYEGYVSTITIMELLSAPRISEERHEKIRSLLE 63
Query 61 AVVWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHF 115
V IA G+L Y +SH G++ +D LIAATA+V ++ L T N +HF
Sbjct 64 IFEHIPVDRKIAAAAGKLLSTYHASH-GLNAMDALIAATALVHESVLFTLNKKHF 117
>gi|172035499|ref|YP_001802000.1| hypothetical protein cce_0583 [Cyanothece sp. ATCC 51142]
gi|57864837|gb|AAW57012.1| PIN-domain protein [Cyanothece sp. ATCC 51142]
gi|171696953|gb|ACB49934.1| hypothetical protein cce_0583 [Cyanothece sp. ATCC 51142]
Length=128
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/123 (34%), Positives = 65/123 (53%), Gaps = 7/123 (5%)
Query 3 LIDTTIAVDHLRGEPAAAVLLAELINNGEE--IAASELVRFELLAGVR-ESELAALEAFF 59
LIDT I +D + E A+ L++ ++ ++ S + EL+ G R +SEL L F
Sbjct 5 LIDTNILID-VANEDLTAI--TRLVDEAKKAVLSVSIITVVELIVGCRNKSELQKLNHFL 61
Query 60 SAVVWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPMFP 119
S + + ++I+ +G +L + Y SH G+ D LIAATAI + LL+ N R + P
Sbjct 62 SQFHYLTLNQEISDLGIQLMQEYYLSH-GLMIPDSLIAATAIDYNIALLSKNQRDYCFIP 120
Query 120 DLQ 122
L
Sbjct 121 SLN 123
>gi|345303231|ref|YP_004825133.1| PilT protein domain-containing protein [Rhodothermus marinus
SG0.5JP17-172]
gi|345112464|gb|AEN73296.1| PilT protein domain protein [Rhodothermus marinus SG0.5JP17-172]
Length=129
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/123 (36%), Positives = 61/123 (50%), Gaps = 7/123 (5%)
Query 3 LIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAGVR-ESELAALEAFF-- 59
L+D+ + +D LRG P A V E ++ EEIA V EL+ G R + E L+
Sbjct 3 LLDSDVMIDLLRGYPPA-VSWFETLDEEEEIALPGFVAMELIQGCRSKKEQRQLQRSLIP 61
Query 60 SAVVWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPMFP 119
VVW L ED R L +Y SH G+ +D LIA TA+ ++ L T +H+
Sbjct 62 FGVVWPL-PEDCDR-ALELFMQYHLSH-GVGMLDVLIAQTALALEVPLYTFKQKHYQFLS 118
Query 120 DLQ 122
LQ
Sbjct 119 ALQ 121
>gi|332662727|ref|YP_004445515.1| PilT protein domain-containing protein [Haliscomenobacter hydrossis
DSM 1100]
gi|332331541|gb|AEE48642.1| PilT protein domain protein [Haliscomenobacter hydrossis DSM
1100]
Length=126
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/112 (28%), Positives = 54/112 (49%), Gaps = 0/112 (0%)
Query 4 IDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAGVRESELAALEAFFSAVV 63
+DT+I +D R E L L S + +E+ G + + E FFS +V
Sbjct 4 LDTSILIDFFRKEKKENSLFFRLTQQYRIFTVSVITEYEIFVGSNQEQQEFWENFFSRIV 63
Query 64 WTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHF 115
+++ ++ + ++ ++ I+ D LIAATAI + L TTN++HF
Sbjct 64 VLPFDSASSQVAVQIFKDLKAKNKLIEIPDILIAATAINNNLPLATTNLKHF 115
>gi|229578488|ref|YP_002836886.1| PilT protein domain protein [Sulfolobus islandicus Y.G.57.14]
gi|229582947|ref|YP_002841346.1| PilT protein domain protein [Sulfolobus islandicus Y.N.15.51]
gi|228009202|gb|ACP44964.1| PilT protein domain protein [Sulfolobus islandicus Y.G.57.14]
gi|228013663|gb|ACP49424.1| PilT protein domain protein [Sulfolobus islandicus Y.N.15.51]
Length=130
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/123 (26%), Positives = 63/123 (52%), Gaps = 4/123 (3%)
Query 1 VKLIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFEL-LAGVRESELAALEAFF 59
++ +D+ I +D L+G A + + + EE+A + + FE+ G + + LE FF
Sbjct 1 MECLDSDIIIDFLKGRDEAVNYIKK---SKEELATTSINVFEVYFGGYKIGKTKCLEDFF 57
Query 60 SAVVWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPMFP 119
S++ + + ++ + + + R I+ D LIA+ IV L+T+N++HF
Sbjct 58 SSLKILTLDYNASKKAAEIGTKLSNEGRQIEVKDLLIASICIVNGCTLVTSNIKHFSRIN 117
Query 120 DLQ 122
+L+
Sbjct 118 ELK 120
>gi|153872477|ref|ZP_02001357.1| PIN domain protein [Beggiatoa sp. PS]
gi|152071058|gb|EDN68644.1| PIN domain protein [Beggiatoa sp. PS]
Length=125
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/123 (33%), Positives = 58/123 (48%), Gaps = 8/123 (6%)
Query 3 LIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAGVRES-ELAALEAFFSA 61
L+DT + + LRG A L EL +I S + EL+ G+R EL AL
Sbjct 2 LVDTDVLIWFLRGNQKAVTRLNEL----PKINISAITYMELVQGMRNKRELQALHQTIKM 57
Query 62 VVWTLVTED--IARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPMFP 119
W ++ D I++ + SH + D LIAATA+ D LLT N +H+ M
Sbjct 58 FQWEVILLDNTISQYAMNYVETFYHSH-ALRLADALIAATAVHHDLTLLTANNKHYQMLK 116
Query 120 DLQ 122
+L+
Sbjct 117 ELE 119
>gi|91204386|emb|CAJ70886.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis]
Length=137
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/125 (32%), Positives = 58/125 (47%), Gaps = 7/125 (5%)
Query 3 LIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAGVRES-----ELAALEA 57
LIDT + +L G+ L L G I+ L EL GV S + AL+
Sbjct 6 LIDTDWIIHYLNGQEEIVKRLVALRKEGLAISVISLA--ELYEGVYYSTNPKGDKKALDD 63
Query 58 FFSAVVWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPM 117
F + V+ + ++I +I G+ + R I D D LIAAT + + LLT N++HF +
Sbjct 64 FLTGVLILGLEDEICKIFGKERGKLRKLKIVIGDFDLLIAATCLCYNLTLLTNNIKHFKI 123
Query 118 FPDLQ 122
L
Sbjct 124 VEKLN 128
>gi|323474280|gb|ADX84886.1| VapC-type toxin [Sulfolobus islandicus REY15A]
Length=130
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/123 (26%), Positives = 63/123 (52%), Gaps = 4/123 (3%)
Query 1 VKLIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFEL-LAGVRESELAALEAFF 59
++ +D+ I +D L+G A + + + EE+A + + FE+ G + + LE FF
Sbjct 1 MECLDSDIIIDFLKGRDEAVNYIKK---SKEELAITSINVFEVYFGGYKIGKTKCLEDFF 57
Query 60 SAVVWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPMFP 119
S++ + + ++ + + + R I+ D LIA+ IV L+T+N++HF
Sbjct 58 SSLKILTLDYNASKKAAEIGTKLSNEGRQIEVKDLLIASICIVNGCTLVTSNIKHFSRIN 117
Query 120 DLQ 122
+L+
Sbjct 118 ELK 120
>gi|333980719|ref|YP_004518664.1| PilT protein domain-containing protein [Desulfotomaculum kuznetsovii
DSM 6115]
gi|333824200|gb|AEG16863.1| PilT protein domain protein [Desulfotomaculum kuznetsovii DSM
6115]
Length=140
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/120 (34%), Positives = 58/120 (49%), Gaps = 0/120 (0%)
Query 3 LIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAGVRESELAALEAFFSAV 62
L+DT+ + HLR P LL EL++ ++A S + E+ GV+ E FF V
Sbjct 10 LLDTSAVILHLRNFPGMKELLLELLDARGQLAVSTVTLVEVWQGVKAGEEGKTRRFFEGV 69
Query 63 VWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPMFPDLQ 122
+ ++A G LAR R I+ D +IAA A+ +LTTN RHF L+
Sbjct 70 SVIPLDAELAEKAGELARSLREKGFTIELADIIIAAAALAAKVPVLTTNRRHFSFVDGLE 129
>gi|284997172|ref|YP_003418939.1| twitching mobility protein PilT [Sulfolobus islandicus L.D.8.5]
gi|284445067|gb|ADB86569.1| PilT protein domain protein [Sulfolobus islandicus L.D.8.5]
Length=130
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/122 (26%), Positives = 62/122 (51%), Gaps = 4/122 (3%)
Query 1 VKLIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFEL-LAGVRESELAALEAFF 59
++ +D+ I +D L+G A + + + EE+A + + FE+ G + + LE FF
Sbjct 1 MECLDSDIIIDFLKGRDEAVNYIKK---SKEELATTSINVFEVYFGGYKIGKTKCLEDFF 57
Query 60 SAVVWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPMFP 119
S++ + + ++ + + + R I+ D LIA+ IV L+T+N++HF
Sbjct 58 SSLKILTLDYNASKKAAEIGTKLSNEGRQIEVKDLLIASICIVNGCTLVTSNIKHFSRIN 117
Query 120 DL 121
+L
Sbjct 118 EL 119
>gi|225873269|ref|YP_002754728.1| PIN domain protein [Acidobacterium capsulatum ATCC 51196]
gi|225792522|gb|ACO32612.1| PIN domain protein [Acidobacterium capsulatum ATCC 51196]
Length=124
Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/116 (32%), Positives = 57/116 (50%), Gaps = 2/116 (1%)
Query 3 LIDTTIAVDHLRGEPAAAV-LLAELINNGEEIAASELVRFELLAGVRESELAALEAFFSA 61
L+D+ I ++ RG A V L + E + + + EL AG R E L F A
Sbjct 4 LVDSDILIEVSRGRDTAIVERWMALSRSVEAVLYTPVTAAELWAGARPGEQELLTRLFQA 63
Query 62 VVWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPM 117
+ + E+ R+ G R++ SH ++ D LIAA A+ +A L T N +H+PM
Sbjct 64 IDCAPLDEETGRMAGAFLRQFHKSH-SVELGDALIAAAAVQQEAMLWTRNRKHYPM 118
>gi|227829525|ref|YP_002831304.1| twitching mobility protein PilT [Sulfolobus islandicus L.S.2.15]
gi|227455972|gb|ACP34659.1| PilT protein domain protein [Sulfolobus islandicus L.S.2.15]
Length=130
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/123 (26%), Positives = 63/123 (52%), Gaps = 4/123 (3%)
Query 1 VKLIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFEL-LAGVRESELAALEAFF 59
++ +D+ I +D L+G A + + + EE+A + + FE+ G + + LE FF
Sbjct 1 MECLDSDIIIDFLKGRDEAVNYIKK---SKEELATTSINVFEVYFGGYKIGKTKCLEDFF 57
Query 60 SAVVWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPMFP 119
S++ + + ++ + + + R I+ D LIA+ IV L+T+N++HF
Sbjct 58 SSLKILTLDYNASKKAAEIGTKLSNEGRQIEVKDLLIASICIVNGYTLVTSNIKHFSRIN 117
Query 120 DLQ 122
+L+
Sbjct 118 ELK 120
>gi|312889611|ref|ZP_07749161.1| PilT protein domain protein [Mucilaginibacter paludis DSM 18603]
gi|311297959|gb|EFQ75078.1| PilT protein domain protein [Mucilaginibacter paludis DSM 18603]
Length=124
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/129 (32%), Positives = 57/129 (45%), Gaps = 18/129 (13%)
Query 3 LIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAGVRESELAALEAFFSAV 62
+IDT I +DHLR + LA+L + E S + FEL G E +
Sbjct 2 VIDTCIFIDHLRSKDRTNTTLAKLPTD-EPAYVSVVTLFELYCGANTPE--------KKL 52
Query 63 VWTLVTED---------IARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVR 113
VTED +A G + R + ++GI D +IAAT +V D +LT N
Sbjct 53 DIAAVTEDLNILPFDATVAEKAGDIFRALKRQNKGIGPQDTMIAATCLVFDQPILTRNKD 112
Query 114 HFPMFPDLQ 122
HF +L+
Sbjct 113 HFKRVDNLK 121
>gi|153873976|ref|ZP_02002370.1| PIN domain protein [Beggiatoa sp. PS]
gi|152069563|gb|EDN67633.1| PIN domain protein [Beggiatoa sp. PS]
Length=130
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/127 (33%), Positives = 59/127 (47%), Gaps = 4/127 (3%)
Query 2 KLIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAGVRES-ELAALEAFFS 60
KL+DTTI ++ RG AA + + + + S + EL+AG R E+ + +
Sbjct 5 KLLDTTILINLFRGHEKAADFIEKARTSKIPLFISVISAMELVAGCRNQIEVKKTQKIVA 64
Query 61 AVVWTLVTEDIARIGGRLARRYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPMFPD 120
++ D L Y SH G+ D LIAATA+ +L T N RHF M D
Sbjct 65 DFTLIHLSPDATAKAYELMLEYTKSH-GLTIPDALIAATALTKGIELATDNERHFLMISD 123
Query 121 L--QPPY 125
L + PY
Sbjct 124 LIVKRPY 130
Lambda K H
0.323 0.138 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 130354689300
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40