BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 21,062,489 sequences; 7,218,481,314 total letters Query= Rv2548A Rv2548A Conserved protein 2869253:2869627 reverse MW:13943 Length=124 Score E Sequences producing significant alignments: (Bits) Value gi|15842085|ref|NP_337122.1| hypothetical protein MT2625 [Mycoba... 238 3e-61 gi|289754654|ref|ZP_06514032.1| conserved hypothetical protein [... 187 7e-46 gi|289570716|ref|ZP_06450943.1| predicted protein [Mycobacterium... 132 2e-29 gi|333989269|ref|YP_004521883.1| hypothetical protein JDM601_062... 127 9e-28 gi|375138108|ref|YP_004998757.1| hypothetical protein [Mycobacte... 120 1e-25 gi|145225320|ref|YP_001135998.1| hypothetical protein Mflv_4742 ... 111 5e-23 gi|120402721|ref|YP_952550.1| hypothetical protein Mvan_1721 [My... 73.2 1e-11 gi|385674345|ref|ZP_10048273.1| hypothetical protein AATC3_00360... 58.5 4e-07 gi|30250173|ref|NP_842243.1| hypothetical protein NE2241 [Nitros... 43.5 0.015 gi|359426995|ref|ZP_09218070.1| hypothetical protein GOAMR_71_00... 43.1 0.019 gi|359424330|ref|ZP_09215450.1| hypothetical protein GOAMR_26_00... 40.4 0.11 gi|15606925|ref|NP_214306.1| hypothetical protein aq_1899a [Aqui... 40.4 0.11 gi|125825224|ref|XP_699102.2| PREDICTED: EMILIN-3 [Danio rerio] 40.0 0.15 gi|407005668|gb|EKE21734.1| hypothetical protein ACD_7C00143G000... 38.1 0.62 gi|375096877|ref|ZP_09743142.1| hypothetical protein SacmaDRAFT_... 37.7 0.85 gi|397589822|gb|EJK54810.1| hypothetical protein THAOC_25530, pa... 37.4 0.93 gi|296470995|gb|DAA13110.1| hCG2045904-like [Bos taurus] 37.4 0.93 gi|358422403|ref|XP_600614.5| PREDICTED: T-complex protein 11 ho... 37.0 1.2 gi|325093537|gb|EGC46847.1| conserved hypothetical protein [Ajel... 37.0 1.3 gi|384915737|ref|ZP_10015947.1| conserved hypothetical protein [... 37.0 1.5 gi|291540289|emb|CBL13400.1| Methyl-accepting chemotaxis protein... 35.8 2.9 gi|291537054|emb|CBL10166.1| Methyl-accepting chemotaxis protein... 35.8 3.0 gi|292491110|ref|YP_003526549.1| hypothetical protein Nhal_0989 ... 35.8 3.2 gi|192290207|ref|YP_001990812.1| hypothetical protein Rpal_1810 ... 35.8 3.4 gi|337738573|ref|YP_004638020.1| TetR family transcriptional reg... 35.4 3.5 gi|402082962|gb|EJT77980.1| kinesin-II 85 kDa subunit [Gaeumanno... 35.4 3.6 gi|292493028|ref|YP_003528467.1| hypothetical protein Nhal_3023 ... 35.4 3.6 gi|39934690|ref|NP_946966.1| hypothetical protein RPA1620 [Rhodo... 35.4 3.8 gi|347530560|ref|YP_004837323.1| methyl-accepting chemotaxis pro... 35.4 3.8 gi|343421747|emb|CCD18710.1| hypothetical protein, conserved [Tr... 35.4 3.8 gi|357400622|ref|YP_004912547.1| hypothetical protein SCAT_3038 ... 35.4 3.9 gi|405974353|gb|EKC39006.1| Golgin subfamily A member 4 [Crassos... 35.0 4.8 gi|242215104|ref|XP_002473370.1| predicted protein [Postia place... 35.0 5.4 gi|350291182|gb|EGZ72396.1| hypothetical protein NEUTE2DRAFT_144... 34.3 9.2 gi|12006231|gb|AAG44798.1|AF272660_1 putative coiled-coil protei... 34.3 9.3 >gi|15842085|ref|NP_337122.1| hypothetical protein MT2625 [Mycobacterium tuberculosis CDC1551] gi|148662387|ref|YP_001283910.1| hypothetical protein MRA_2577 [Mycobacterium tuberculosis H37Ra] gi|148823744|ref|YP_001288498.1| hypothetical protein TBFG_12569 [Mycobacterium tuberculosis F11] 72 more sequence titles Length=124 Score = 238 bits (607), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 123/124 (99%), Positives = 124/124 (100%), Gaps = 0/124 (0%) Query 1 VLPENLEQRVTALESQVRELADRVRASEQDAAAARVLAGAADRDVTEFVGEFRDFRRATI 60 +LPENLEQRVTALESQVRELADRVRASEQDAAAARVLAGAADRDVTEFVGEFRDFRRATI Sbjct 1 MLPENLEQRVTALESQVRELADRVRASEQDAAAARVLAGAADRDVTEFVGEFRDFRRATI 60 Query 61 GSFNALREDFTALREEMTERFSHVEERFSRVDDGFTEMRGKLDGAAAGQQRIVELIEQLI 120 GSFNALREDFTALREEMTERFSHVEERFSRVDDGFTEMRGKLDGAAAGQQRIVELIEQLI Sbjct 61 GSFNALREDFTALREEMTERFSHVEERFSRVDDGFTEMRGKLDGAAAGQQRIVELIEQLI 120 Query 121 ADQG 124 ADQG Sbjct 121 ADQG 124 >gi|289754654|ref|ZP_06514032.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289695241|gb|EFD62670.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] Length=124 Score = 187 bits (474), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 116/124 (94%), Positives = 117/124 (95%), Gaps = 0/124 (0%) Query 1 VLPENLEQRVTALESQVRELADRVRASEQDAAAARVLAGAADRDVTEFVGEFRDFRRATI 60 +LPENLEQRVTALESQVRELADRVRASEQDAAAARVLAGAADRDVTEFVGEFRDFRRATI Sbjct 1 MLPENLEQRVTALESQVRELADRVRASEQDAAAARVLAGAADRDVTEFVGEFRDFRRATI 60 Query 61 GSFNALREDFTALREEMTERFSHVEERFSRVDDGFTEMRGKLDGAAAGQQRIVELIEQLI 120 GSFNALREDFTALREEMT F RFSRVDDGFTEMRGKLDGAAAGQQRIVELIEQLI Sbjct 61 GSFNALREDFTALREEMTRTFQSRRRRFSRVDDGFTEMRGKLDGAAAGQQRIVELIEQLI 120 Query 121 ADQG 124 ADQG Sbjct 121 ADQG 124 >gi|289570716|ref|ZP_06450943.1| predicted protein [Mycobacterium tuberculosis T17] gi|289544470|gb|EFD48118.1| predicted protein [Mycobacterium tuberculosis T17] Length=66 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 66/66 (100%), Positives = 66/66 (100%), Gaps = 0/66 (0%) Query 59 TIGSFNALREDFTALREEMTERFSHVEERFSRVDDGFTEMRGKLDGAAAGQQRIVELIEQ 118 TIGSFNALREDFTALREEMTERFSHVEERFSRVDDGFTEMRGKLDGAAAGQQRIVELIEQ Sbjct 1 TIGSFNALREDFTALREEMTERFSHVEERFSRVDDGFTEMRGKLDGAAAGQQRIVELIEQ 60 Query 119 LIADQG 124 LIADQG Sbjct 61 LIADQG 66 >gi|333989269|ref|YP_004521883.1| hypothetical protein JDM601_0629 [Mycobacterium sp. JDM601] gi|333485237|gb|AEF34629.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=122 Score = 127 bits (318), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 76/121 (63%), Positives = 83/121 (69%), Gaps = 7/121 (5%) Query 4 ENLEQRVTALESQVRELADRVRASEQDAAAARVLAGAADRDVTEFVGEFRDFRRATIGSF 63 E LE RV ALE QVREL DRVRASEQDAAAARVLAG ADRDV E E RDFR+AT SF Sbjct 4 EGLEPRVAALEEQVRELRDRVRASEQDAAAARVLAGGADRDVGELGDELRDFRQATNTSF 63 Query 64 NALREDFTALREEMTERFSHVEERFSRVDDGFTEMRGKLDGAAAGQQRIVELIEQLIADQ 123 NALRED +R+EMT FS V GF E+R + D AAGQQ I LI+Q+I Q Sbjct 64 NALREDMLDMRQEMTGGFSDVAT-------GFAEIRAEFDLTAAGQQHIAALIQQVIDRQ 116 Query 124 G 124 G Sbjct 117 G 117 >gi|375138108|ref|YP_004998757.1| hypothetical protein [Mycobacterium rhodesiae NBB3] gi|359818729|gb|AEV71542.1| hypothetical protein MycrhN_0912 [Mycobacterium rhodesiae NBB3] Length=120 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/121 (64%), Positives = 92/121 (77%), Gaps = 7/121 (5%) Query 3 PENLEQRVTALESQVRELADRVRASEQDAAAARVLAGAADRDVTEFVGEFRDFRRATIGS 62 + LE RV ALE+ VR+L RVRASEQDAAAARVLAGAADRDVT+F E RDFR+A + S Sbjct 3 SDGLEARVEALETHVRDLDGRVRASEQDAAAARVLAGAADRDVTQFHSELRDFRQAAVSS 62 Query 63 FNALREDFTALREEMTERFSHVEERFSRVDDGFTEMRGKLDGAAAGQQRIVELIEQLIAD 122 FNA+RED T LR EM RF+ VD+GF E+RGKLD AAAGQQ+IV+++ +LI D Sbjct 63 FNAMREDMTDLRTEM-------RTRFASVDNGFIEVRGKLDAAAAGQQQIVDILHRLIDD 115 Query 123 Q 123 Q Sbjct 116 Q 116 >gi|145225320|ref|YP_001135998.1| hypothetical protein Mflv_4742 [Mycobacterium gilvum PYR-GCK] gi|145217806|gb|ABP47210.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] Length=128 Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 71/121 (59%), Positives = 89/121 (74%), Gaps = 0/121 (0%) Query 4 ENLEQRVTALESQVRELADRVRASEQDAAAARVLAGAADRDVTEFVGEFRDFRRATIGSF 63 ++LE RV ALE QVR+L RV ASE+DAAAARVLAGAADRDV+E GE RDFRRAT SF Sbjct 4 DDLEPRVAALEDQVRDLGARVSASERDAAAARVLAGAADRDVSEIRGELRDFRRATAASF 63 Query 64 NALREDFTALREEMTERFSHVEERFSRVDDGFTEMRGKLDGAAAGQQRIVELIEQLIADQ 123 N +R+DF LR++ + + V+ GF EMRG+LDGAAAGQQRI++L+ +I + Sbjct 64 NGMRQDFVDLRQDFVDLREEFGQLRGHVEQGFAEMRGRLDGAAAGQQRIIDLLTTIIDNP 123 Query 124 G 124 G Sbjct 124 G 124 >gi|120402721|ref|YP_952550.1| hypothetical protein Mvan_1721 [Mycobacterium vanbaalenii PYR-1] gi|119955539|gb|ABM12544.1| hypothetical protein Mvan_1721 [Mycobacterium vanbaalenii PYR-1] Length=107 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 43/89 (49%), Positives = 55/89 (62%), Gaps = 6/89 (6%) Query 35 RVLAGAADRDVTEFVGEFRDFRRATIGSFNALREDFTALREE---MTERFSHVEERFSRV 91 R L A D +E GE RDFR+AT SFNALR+DF LR++ + + F + E V Sbjct 19 RRLTFVAQEDPSEIRGEVRDFRQATTTSFNALRQDFADLRQDFVGLRQDFVALRE---HV 75 Query 92 DDGFTEMRGKLDGAAAGQQRIVELIEQLI 120 D GF EMRGK D AA GQ IV+L++ +I Sbjct 76 DQGFAEMRGKFDAAAVGQHEIVQLLQTII 104 >gi|385674345|ref|ZP_10048273.1| hypothetical protein AATC3_00360 [Amycolatopsis sp. ATCC 39116] Length=72 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/70 (49%), Positives = 42/70 (60%), Gaps = 14/70 (20%) Query 55 FRRATIGSFNALREDFTALREEMTERFSHVEERFSRVDDGFTEMRGKLDGAAAGQQRIVE 114 R ATI S NA+ E T LRE R++ GF+E+RGKLD A A Q+RIV Sbjct 11 LRHATISSVNAMCEALTDLRE--------------RLETGFSEIRGKLDAAVADQERIVG 56 Query 115 LIEQLIADQG 124 L++QLIA QG Sbjct 57 LLDQLIARQG 66 >gi|30250173|ref|NP_842243.1| hypothetical protein NE2241 [Nitrosomonas europaea ATCC 19718] gi|30180968|emb|CAD86153.1| hypothetical protein NE2241 [Nitrosomonas europaea ATCC 19718] Length=205 Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust. Identities = 28/88 (32%), Positives = 48/88 (55%), Gaps = 15/88 (17%) Query 31 AAAARVLAGAADRDVTEFVGEFRDFRRATIGS----FNALRED-----------FTALRE 75 AA V +DR++ E + E + ++A FNA++E FTA++E Sbjct 17 VAAVDVAPRISDREIIESLAELKAGQKALEEKMDLRFNAMQEQIDQRFTAIDQRFTAMQE 76 Query 76 EMTERFSHVEERFSRVDDGFTEMRGKLD 103 +M +RF+ V++RF+ VD FT M+ ++D Sbjct 77 QMDQRFTAVDQRFTAVDQHFTAMQKQID 104 >gi|359426995|ref|ZP_09218070.1| hypothetical protein GOAMR_71_00050 [Gordonia amarae NBRC 15530] gi|358237608|dbj|GAB07652.1| hypothetical protein GOAMR_71_00050 [Gordonia amarae NBRC 15530] Length=188 Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust. Identities = 35/104 (34%), Positives = 53/104 (51%), Gaps = 11/104 (10%) Query 3 PENLEQRVTALESQVRELADRVRASEQDAAAARVLAGAADRDVTEFVGEFRDFRRATIGS 62 P++L+ R+ +E +V L + +D +AARVLA AD+DV+ F RA Sbjct 4 PDDLDARLRNVEREVEGLKTENKELRRDVSAARVLAAGADQDVSNMHAAF----RAQTMV 59 Query 63 FNALREDFTALREEMTERFSHVEERFSRVD---DGFTEMRGKLD 103 NA+RE T L E +R +++R +D DG + G LD Sbjct 60 LNAMRE--TQL--EHGKRIGGLDQRMGGLDQRMDGLDQRMGGLD 99 >gi|359424330|ref|ZP_09215450.1| hypothetical protein GOAMR_26_00050 [Gordonia amarae NBRC 15530] gi|358240302|dbj|GAB05032.1| hypothetical protein GOAMR_26_00050 [Gordonia amarae NBRC 15530] Length=138 Score = 40.4 bits (93), Expect = 0.11, Method: Compositional matrix adjust. Identities = 39/100 (39%), Positives = 66/100 (66%), Gaps = 8/100 (8%) Query 4 ENLEQRVTALESQVRELADRVRASEQDAAAARVLAGAADRDVTEFVGEFRDFRRATIGSF 63 E+L+ R+TA+E+++ ++A++ R + +D+AAARVLAGAADRDV+ E R + Sbjct 5 EDLDARLTAVENRLDDVAEQSRRAREDSAAARVLAGAADRDVS----EMRAVLQGHTKVL 60 Query 64 NALREDFTALREEMTERFSHVEERFSRVDDGFTEMRGKLD 103 NALRE T L E + +F ++ +FS++D F+++ + D Sbjct 61 NALRE--TQL--EHSAKFDRIDAKFSQIDAKFSQIDARFD 96 >gi|15606925|ref|NP_214306.1| hypothetical protein aq_1899a [Aquifex aeolicus VF5] gi|14286034|sp|O67738.1|Y1900_AQUAE RecName: Full=Uncharacterized protein aq_1900 gi|2984177|gb|AAC07710.1| putative protein [Aquifex aeolicus VF5] Length=168 Score = 40.4 bits (93), Expect = 0.11, Method: Compositional matrix adjust. Identities = 25/78 (33%), Positives = 38/78 (49%), Gaps = 7/78 (8%) Query 43 RDVTEFVGEFRDFRRATIGSFNALREDFTALREEMTERFSHVEERFSRVDDGFTEMRGKL 102 RD+ E + F T F L + LRE+M +RF V++RF +VD F ++ +L Sbjct 29 RDIAEIKATLKTFMEQTDKRFQDLNQRINELREDMNKRFEQVDKRFEQVDKRFEQINNEL 88 Query 103 D-------GAAAGQQRIV 113 + G AGQ +V Sbjct 89 NRLIQIMVGIFAGQIALV 106 >gi|125825224|ref|XP_699102.2| PREDICTED: EMILIN-3 [Danio rerio] Length=1012 Score = 40.0 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 30/106 (29%), Positives = 47/106 (45%), Gaps = 8/106 (7%) Query 11 TALESQVRE--LADRVRASEQDAAAARVLAGAADRDVTEFVGEFRDFRRATIGSFNALRE 68 T L Q RE LA +V+ Q + G +R +T GE D RR G R Sbjct 840 TNLTWQEREERLAQQVKGVVQLVGRQASMLGTGERKLTRLKGELHDLRRKVAGELQGCRS 899 Query 69 DFTALREEMTE---RFSHVEER---FSRVDDGFTEMRGKLDGAAAG 108 +++E+TE R + VE + + + D +RG+L+ + G Sbjct 900 TALGVQKEVTEVGGRVARVEGQCGGLAHLSDDLERIRGELEKQSDG 945 >gi|407005668|gb|EKE21734.1| hypothetical protein ACD_7C00143G0006 [uncultured bacterium] Length=153 Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust. Identities = 22/74 (30%), Positives = 37/74 (50%), Gaps = 7/74 (9%) Query 44 DVTEFVGE---FRD----FRRATIGSFNALREDFTALREEMTERFSHVEERFSRVDDGFT 96 ++TEF GE F+D F+ T +F LR D +EE F + E SR++D Sbjct 46 ELTEFKGEMYSFKDEMYTFKEETNNNFEVLRNDLDNFKEETNNNFKAMFEYLSRMEDDVA 105 Query 97 EMRGKLDGAAAGQQ 110 E++ +L+ ++ Sbjct 106 EIKAELNSKKDSEK 119 >gi|375096877|ref|ZP_09743142.1| hypothetical protein SacmaDRAFT_4253 [Saccharomonospora marina XMU15] gi|374657610|gb|EHR52443.1| hypothetical protein SacmaDRAFT_4253 [Saccharomonospora marina XMU15] Length=99 Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust. Identities = 48/120 (40%), Positives = 59/120 (50%), Gaps = 25/120 (20%) Query 4 ENLEQRVTALESQVRELADRVRASEQDAAAARVLAGAADRDVTEFVGEFRDFRRATIGSF 63 E LE+R+ ALE +R+ QDAAAARVLAG ADRDVT+ R Sbjct 5 EELERRLVALE-------ERMAQIAQDAAAARVLAGGADRDVTQVSETLAAHTRV----L 53 Query 64 NALREDFTALREEMTERFSHVEERFSRVDDGFTEMRGKLDGAAAGQQRIVELIEQLIADQ 123 NALRE T L++ + RVD+GF GKL AG I L+ +LI Q Sbjct 54 NALRE--TQLKDR-----GETDTLAGRVDEGF----GKL---TAGMTDISSLLRELIDRQ 99 >gi|397589822|gb|EJK54810.1| hypothetical protein THAOC_25530, partial [Thalassiosira oceanica] Length=489 Score = 37.4 bits (85), Expect = 0.93, Method: Composition-based stats. Identities = 21/58 (37%), Positives = 30/58 (52%), Gaps = 3/58 (5%) Query 67 REDFTALREEMTERFSHVEERFS---RVDDGFTEMRGKLDGAAAGQQRIVELIEQLIA 121 R+ F LR+EM RF+ + R S ++ GFTEM G+L + E+ QL A Sbjct 243 RQSFQQLRQEMESRFNDLANRLSALQEMESGFTEMSGQLSALKEMESGFTEMSGQLSA 300 >gi|296470995|gb|DAA13110.1| hCG2045904-like [Bos taurus] Length=506 Score = 37.4 bits (85), Expect = 0.93, Method: Composition-based stats. Identities = 36/131 (28%), Positives = 66/131 (51%), Gaps = 21/131 (16%) Query 2 LPENL---EQRVTALESQVRELADRVRASEQDAAAARVLAGAADRDVTEFVGEFRDFRRA 58 PE L + R+ +ESQ+++LA + AS AR +G+A TEFV + + +A Sbjct 312 FPETLLMDKIRLQDMESQLKQLA--ILASV--LLVARSFSGSALFSSTEFVNKLKHITKA 367 Query 59 TIGSFNALRED-FTALREEMTERFSHVEERFSRVDDGFTE--------MRGKLDGAAAGQ 109 + FN+ E+ ++ E+++++ + ER D G T +RG+L A + Sbjct 368 LMEEFNSRPEEAMVSVSEQVSQK---IHERLK--DMGLTALSSEKKACLRGQLQNIAKKE 422 Query 110 QRIVELIEQLI 120 R+ +++Q I Sbjct 423 NRVRNIVDQRI 433 >gi|358422403|ref|XP_600614.5| PREDICTED: T-complex protein 11 homolog [Bos taurus] gi|359081774|ref|XP_002699878.2| PREDICTED: T-complex protein 11 homolog [Bos taurus] Length=511 Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 36/131 (28%), Positives = 66/131 (51%), Gaps = 21/131 (16%) Query 2 LPENL---EQRVTALESQVRELADRVRASEQDAAAARVLAGAADRDVTEFVGEFRDFRRA 58 PE L + R+ +ESQ+++LA + AS AR +G+A TEFV + + +A Sbjct 317 FPETLLMDKIRLQDMESQLKQLA--ILASV--LLVARSFSGSALFSSTEFVNKLKHITKA 372 Query 59 TIGSFNALRED-FTALREEMTERFSHVEERFSRVDDGFTE--------MRGKLDGAAAGQ 109 + FN+ E+ ++ E+++++ + ER D G T +RG+L A + Sbjct 373 LMEEFNSRPEEAMVSVSEQVSQK---IHERLK--DMGLTALSSEKKACLRGQLQNIAKKE 427 Query 110 QRIVELIEQLI 120 R+ +++Q I Sbjct 428 NRVRNIVDQRI 438 >gi|325093537|gb|EGC46847.1| conserved hypothetical protein [Ajellomyces capsulatus H88] Length=268 Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 38/75 (51%), Gaps = 7/75 (9%) Query 47 EFVGEFRDFRRATIGSFNALRED----FTALREEMTERFSHVEERFSRVDDGFTEMRGKL 102 E G+ + + N LR D F + +M +RF HV++RF VD F E+ K+ Sbjct 49 EMQGQLQTQNGYILEHINGLRRDVDKRFQEVETKMDKRFQHVDKRFQEVDKRFQEVEAKM 108 Query 103 DGAAAGQQRIVELIE 117 D AG +R+ ++E Sbjct 109 D---AGFKRVEVMLE 120 >gi|384915737|ref|ZP_10015947.1| conserved hypothetical protein [Methylacidiphilum fumariolicum SolV] gi|384526874|emb|CCG91818.1| conserved hypothetical protein [Methylacidiphilum fumariolicum SolV] Length=121 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 26/75 (35%), Positives = 39/75 (52%), Gaps = 10/75 (13%) Query 50 GEFRDFRRATIGSFNALREDFTALREEMTERFSHVEERFSRVDDGFTEMRGKLDGAAA-- 107 GE R G N+LR + +LR EM RF +E+R DD +EM + + A Sbjct 40 GEMNSLR----GEMNSLRGEMNSLRLEMNARFEAMEKRL---DDLRSEMNSRFEAVNARF 92 Query 108 -GQQRIVELIEQLIA 121 Q + +ELIE+++A Sbjct 93 AEQGKRIELIEKILA 107 >gi|291540289|emb|CBL13400.1| Methyl-accepting chemotaxis protein [Roseburia intestinalis XB6B4] Length=572 Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust. Identities = 30/117 (26%), Positives = 56/117 (48%), Gaps = 15/117 (12%) Query 5 NLEQRVTALESQVRELADRVRASEQDAAAARVLAGAADR---DVTEFVGEFRDFRRA--- 58 NL++ + L V E++ V+A Q G R D+T+F+G+F + + + Sbjct 262 NLKEAMGILADYVSEISVEVKAIAQ---------GNLTRNGDDITDFLGDFSELKTSLLY 312 Query 59 TIGSFNALREDFTALREEMTERFSHVEERFSRVDDGFTEMRGKLDGAAAGQQRIVEL 115 + FN+ + + L E+++ S VE+ + DG TE G ++ A +V+L Sbjct 313 ILKRFNSTLTEISNLAEQVSSNSSEVEKASKSLADGATEQAGVIEELNATIDTVVDL 369 >gi|291537054|emb|CBL10166.1| Methyl-accepting chemotaxis protein [Roseburia intestinalis M50/1] Length=572 Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust. Identities = 30/117 (26%), Positives = 56/117 (48%), Gaps = 15/117 (12%) Query 5 NLEQRVTALESQVRELADRVRASEQDAAAARVLAGAADR---DVTEFVGEFRDFRRA--- 58 NL++ + L V E++ V+A Q G R D+T+F+G+F + + + Sbjct 262 NLKEAMGILADYVSEISVEVKAIAQ---------GNLTRNGDDITDFLGDFSELKTSLLY 312 Query 59 TIGSFNALREDFTALREEMTERFSHVEERFSRVDDGFTEMRGKLDGAAAGQQRIVEL 115 + FN+ + + L E+++ S VE+ + DG TE G ++ A +V+L Sbjct 313 ILKRFNSTLTEISNLAEQVSSNSSEVEKASKSLADGATEQAGVIEELNATIDTVVDL 369 >gi|292491110|ref|YP_003526549.1| hypothetical protein Nhal_0989 [Nitrosococcus halophilus Nc4] gi|291579705|gb|ADE14162.1| conserved hypothetical protein [Nitrosococcus halophilus Nc4] Length=119 Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust. Identities = 28/92 (31%), Positives = 44/92 (48%), Gaps = 10/92 (10%) Query 26 ASEQDA-AAARVLAGAADRDVTEFVGEFRDFRRATIGSFNALREDFTALREEMTERFSHV 84 SE+ A +AA L G DR F D R FN + + F + EM RF+ V Sbjct 17 VSEESARSAAEALTGYGDR--------FHDLEREMDRRFNEVDQRFNEITREMDRRFNEV 68 Query 85 EERFSRVDDGFTEMRGKLDGAAAGQQRIVELI 116 + RF+ VD F + + + + G QR+++ + Sbjct 69 DHRFNEVDQRFNRVDVEFE-KSKGVQRLLQWM 99 >gi|192290207|ref|YP_001990812.1| hypothetical protein Rpal_1810 [Rhodopseudomonas palustris TIE-1] gi|192283956|gb|ACF00337.1| hypothetical protein Rpal_1810 [Rhodopseudomonas palustris TIE-1] Length=106 Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust. Identities = 16/51 (32%), Positives = 32/51 (63%), Gaps = 3/51 (5%) Query 2 LPENLEQRVTAL---ESQVRELADRVRASEQDAAAARVLAGAADRDVTEFV 49 +P ++Q++ AL E+ +R+ +++RA +DA A V+AG ++ EF+ Sbjct 1 MPHTIDQKINALLEQETSLRQWLEQIRALTKDARGATVIAGLTQKETEEFL 51 >gi|337738573|ref|YP_004638020.1| TetR family transcriptional regulator [Clostridium acetobutylicum DSM 1731] gi|384460084|ref|YP_005672504.1| TetR family transcriptional regulator [Clostridium acetobutylicum EA 2018] gi|325510773|gb|ADZ22409.1| transcriptional regulator, TetR family [Clostridium acetobutylicum EA 2018] gi|336291669|gb|AEI32803.1| transcriptional regulator, TetR family [Clostridium acetobutylicum DSM 1731] Length=176 Score = 35.4 bits (80), Expect = 3.5, Method: Compositional matrix adjust. Identities = 30/94 (32%), Positives = 45/94 (48%), Gaps = 3/94 (3%) Query 6 LEQRVTALESQVRELADRVRASEQDAAAARVLAGAADRDVTEFVGE-FRDFRRATIGSFN 64 LE R T +E REL+ R A D A ++ +FVGE F+D +ATI S Sbjct 14 LEGRKTLMEKSYRELSIRTIAKNSDIAIGTFYNYFKSKE--DFVGEIFKDDWKATIRSLE 71 Query 65 ALREDFTALREEMTERFSHVEERFSRVDDGFTEM 98 AL + L+E++ + + +E R F E+ Sbjct 72 ALTDSKEELKEKIRKVYLAIEGFVHRYISIFYEI 105 >gi|402082962|gb|EJT77980.1| kinesin-II 85 kDa subunit [Gaeumannomyces graminis var. tritici R3-111a-1] Length=1215 Score = 35.4 bits (80), Expect = 3.6, Method: Compositional matrix adjust. Identities = 20/75 (27%), Positives = 43/75 (58%), Gaps = 2/75 (2%) Query 7 EQRVTALESQVRELADRVRASEQDAAAARVLAGAADRDVTEFVGEFRDFRRATIGSFNAL 66 +Q + A+ +++ + D ++ E+ + +V+AGAA+R + V E F S+N+L Sbjct 699 KQEMDAVLDEIKVVRDNIK--ERVGESLQVIAGAAERIAADVVSELSQFHSQLQSSYNSL 756 Query 67 REDFTALREEMTERF 81 +DF A+ E++++ Sbjct 757 GKDFKAMFEDLSKTL 771 >gi|292493028|ref|YP_003528467.1| hypothetical protein Nhal_3023 [Nitrosococcus halophilus Nc4] gi|291581623|gb|ADE16080.1| conserved hypothetical protein [Nitrosococcus halophilus Nc4] Length=130 Score = 35.4 bits (80), Expect = 3.6, Method: Compositional matrix adjust. Identities = 26/79 (33%), Positives = 37/79 (47%), Gaps = 9/79 (11%) Query 26 ASEQDA-AAARVLAGAADRDVTEFVGEFRDFRRATIGSFNALREDFTALREEMTERFSHV 84 SE+ A +AA L G DR F D R FN + + F + EM RF+ V Sbjct 17 VSEESARSAAEALTGYGDR--------FHDVEREMDRRFNEVGQRFNEMEREMDRRFNQV 68 Query 85 EERFSRVDDGFTEMRGKLD 103 ++RF VD F + ++D Sbjct 69 DQRFHEVDQRFNAIEREMD 87 >gi|39934690|ref|NP_946966.1| hypothetical protein RPA1620 [Rhodopseudomonas palustris CGA009] gi|39648540|emb|CAE27061.1| unknown protein [Rhodopseudomonas palustris CGA009] Length=106 Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust. Identities = 16/51 (32%), Positives = 32/51 (63%), Gaps = 3/51 (5%) Query 2 LPENLEQRVTAL---ESQVRELADRVRASEQDAAAARVLAGAADRDVTEFV 49 +P ++Q++ AL E+ +R+ +++RA +DA A V+AG ++ EF+ Sbjct 1 MPHTIDQKINALLEQETSLRQWLEQIRALTKDARGATVIAGLTQKETEEFL 51 >gi|347530560|ref|YP_004837323.1| methyl-accepting chemotaxis protein [Roseburia hominis A2-183] gi|345500708|gb|AEN95391.1| methyl-accepting chemotaxis protein [Roseburia hominis A2-183] Length=572 Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust. Identities = 21/77 (28%), Positives = 40/77 (52%), Gaps = 3/77 (3%) Query 44 DVTEFVGEFRDFRRA---TIGSFNALREDFTALREEMTERFSHVEERFSRVDDGFTEMRG 100 D+T+F+G+F + + + + FN+ + + L E+++ S VE + DG TE G Sbjct 295 DITDFLGDFSELKTSLLYILKRFNSTLTEISNLAEQVSSNSSEVENASKSLADGATEQAG 354 Query 101 KLDGAAAGQQRIVELIE 117 ++ A +V+L E Sbjct 355 VIEELNATIDAVVDLAE 371 >gi|343421747|emb|CCD18710.1| hypothetical protein, conserved [Trypanosoma vivax Y486] Length=651 Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust. Identities = 28/103 (28%), Positives = 45/103 (44%), Gaps = 4/103 (3%) Query 6 LEQRVTALESQVRELADRVRASEQDAAAARVLAGAADRDVTEFVGEFRDFRRATIGSFNA 65 L +R L Q++ L +R+ D +R + ADR + R+ A + + A Sbjct 531 LSRREAELRCQLKYLRERM----SDIVTSRTVREIADRTRIMNIRREREKLSAQLANLKA 586 Query 66 LREDFTALREEMTERFSHVEERFSRVDDGFTEMRGKLDGAAAG 108 L E++E SH EE+FSR +E R ++D A Sbjct 587 FEASLVDLFHEVSEWISHCEEQFSRFTAEHSESRARIDACVAA 629 >gi|357400622|ref|YP_004912547.1| hypothetical protein SCAT_3038 [Streptomyces cattleya NRRL 8057 = DSM 46488] gi|386356675|ref|YP_006054921.1| hypothetical protein SCATT_30280 [Streptomyces cattleya NRRL 8057 = DSM 46488] gi|337767031|emb|CCB75742.1| protein of unknown function [Streptomyces cattleya NRRL 8057 = DSM 46488] gi|365807183|gb|AEW95399.1| hypothetical protein SCATT_30280 [Streptomyces cattleya NRRL 8057 = DSM 46488] Length=96 Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust. Identities = 33/88 (38%), Positives = 43/88 (49%), Gaps = 19/88 (21%) Query 4 ENLEQRVTALESQVRELADRVRASEQDAAAARVLAGAADRDVTEFVGEFRDFRRATIGSF 63 E L +R+ ALE++V L ++ AA R LA DRDV EF E R R+ Sbjct 5 EELRRRLEALEAEVTTL--------REDAATRALAAMNDRDVAEFRTELRANRQV----L 52 Query 64 NALRE-------DFTALREEMTERFSHV 84 NALRE + LREE+ F+ V Sbjct 53 NALRETQVEQGRELAELREEVRRGFATV 80 >gi|405974353|gb|EKC39006.1| Golgin subfamily A member 4 [Crassostrea gigas] Length=1570 Score = 35.0 bits (79), Expect = 4.8, Method: Compositional matrix adjust. Identities = 41/133 (31%), Positives = 64/133 (49%), Gaps = 24/133 (18%) Query 5 NLEQRVTALESQVRELADRVRASEQDAAAARVLAGAADRDVTEFVGEFRDFRRATIGSFN 64 +LEQR+T ES + +L D +A A+ R++TE +F D TI + N Sbjct 316 SLEQRITEKESAIEQLNS-------DLKSALESKEASLRELTESRAQFEDSTNKTIETLN 368 Query 65 -ALREDFTALREEMTERFSHVE-ERFSRVDDGF-------TEMR-------GKLDGAAAG 108 L+E L+E MTE+ + +E ER S V+ EM+ K+ AA Sbjct 369 MKLQEAEDRLKE-MTEKINQLETERDSLVESNTLSVSQYQEEMKLLRESEQEKIQSLAAL 427 Query 109 QQRIVELIEQLIA 121 ++++ EL +QL A Sbjct 428 EEQVKELNQQLYA 440 >gi|242215104|ref|XP_002473370.1| predicted protein [Postia placenta Mad-698-R] gi|220727538|gb|EED81454.1| predicted protein [Postia placenta Mad-698-R] Length=1718 Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust. Identities = 34/128 (27%), Positives = 60/128 (47%), Gaps = 12/128 (9%) Query 7 EQRVTALESQVRELADRVRASEQDAAAARVLAGAADRDVTEFVGEFRDFRRATIGSF--N 64 ++R+ +L+ +RE D + + + D VLA RDV + + E + + SF Sbjct 535 KRRIISLDIILRECTD-IPSDKHDELIKTVLARGLIRDVVDILDENHSHAKTRLASFIPQ 593 Query 65 ALREDFTALREEMTERFSHVEERFSRVDDG-FTE------MRGKL--DGAAAGQQRIVEL 115 LR+ F++ + +F+ ER +R+DD F MRG L D A ++ +E Sbjct 594 TLRDMFSSGNGALHVQFADASERATRMDDADFLSLLRDIRMRGALLADAATVAERLAIES 653 Query 116 IEQLIADQ 123 + +I Q Sbjct 654 LVGIILKQ 661 >gi|350291182|gb|EGZ72396.1| hypothetical protein NEUTE2DRAFT_144829 [Neurospora tetrasperma FGSC 2509] Length=359 Score = 34.3 bits (77), Expect = 9.2, Method: Compositional matrix adjust. Identities = 34/114 (30%), Positives = 51/114 (45%), Gaps = 17/114 (14%) Query 6 LEQRVTALESQVRELADRVRASEQDAAAARVLAGAADRD-VTEFVGEFRDFRRATIGSFN 64 LE +VT LE++V E RV + DA LAG +RD V E V E +D N Sbjct 142 LESKVTELEAKVAEFETRVATLQSDADKVPALAG--ERDAVREVVSELQDKVSRLEAKLN 199 Query 65 ALRED------FTALREEMTERFSHVEERFSRVDDGFT--------EMRGKLDG 104 + + A REE+ +R ++++ R+ D E+R +LD Sbjct 200 KAQAEADQLPSIMANREELVKRVRELQDKVIRLQDELNSDPDVTTAELRAELDA 253 >gi|12006231|gb|AAG44798.1|AF272660_1 putative coiled-coil protein [Geobacillus stearothermophilus] Length=286 Score = 34.3 bits (77), Expect = 9.3, Method: Compositional matrix adjust. Identities = 31/119 (27%), Positives = 56/119 (48%), Gaps = 14/119 (11%) Query 6 LEQRVTALESQVRELADRVRASEQDAAAARVLAGAADRDVTEF----------VGEFRDF 55 L+Q V+ L+ V EL + +A +QD A + A RDV E V E ++ Sbjct 115 LQQDVSKLQQDVAELQEGQKALQQDVAELQEGQKALQRDVAELQEGQKALQRDVAELQEG 174 Query 56 RRATIGSFNALREDFTALREEMTERFSHVEERFSRVDDGFTEMRGKLDGAAAGQQRIVE 114 ++A L+E AL++++T H+++ +++ M+ L QQ+I+E Sbjct 175 QKALQRDVTELQEGQKALQQDVT----HLQKGQQKLETDMDHMKQSLGNMEKTQQQILE 229 Lambda K H 0.319 0.133 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 180977148336 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Oct 14, 2012 4:13 PM Number of letters in database: 7,218,481,314 Number of sequences in database: 21,062,489 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40