BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2549c
Length=131
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609686|ref|NP_217065.1| hypothetical protein Rv2549c [Mycob... 269 1e-70
gi|340627566|ref|YP_004746018.1| hypothetical protein MCAN_25911... 266 8e-70
gi|289570717|ref|ZP_06450944.1| conserved hypothetical protein [... 208 2e-52
gi|169832259|ref|YP_001718241.1| PilT domain-containing protein ... 99.4 2e-19
gi|153870703|ref|ZP_02000048.1| conserved hypothetical protein [... 84.7 4e-15
gi|147679033|ref|YP_001213248.1| nucleic acid-binding protein [P... 84.0 6e-15
gi|126657325|ref|ZP_01728484.1| hypothetical protein CY0110_0016... 77.0 8e-13
gi|297623199|ref|YP_003704633.1| PilT domain-containing protein ... 75.1 3e-12
gi|169830613|ref|YP_001716595.1| PilT domain-containing protein ... 74.3 5e-12
gi|153873579|ref|ZP_02002115.1| conserved hypothetical protein [... 72.4 2e-11
gi|83590603|ref|YP_430612.1| hypothetical protein Moth_1768 [Moo... 72.0 3e-11
gi|268323933|emb|CBH37521.1| conserved hypothetical protein, PIN... 69.7 1e-10
gi|159028039|emb|CAO87999.1| unnamed protein product [Microcysti... 68.9 2e-10
gi|220907518|ref|YP_002482829.1| PilT protein domain-containing ... 68.9 2e-10
gi|301063440|ref|ZP_07203972.1| toxin-antitoxin system, toxin co... 68.9 3e-10
gi|153877960|ref|ZP_02004431.1| PilT-like protein [Beggiatoa sp.... 65.9 2e-09
gi|88602642|ref|YP_502820.1| hypothetical protein Mhun_1361 [Met... 64.7 4e-09
gi|67922827|ref|ZP_00516326.1| similar to nucleic acid-binding p... 64.3 6e-09
gi|333980750|ref|YP_004518695.1| PilT protein domain-containing ... 64.3 6e-09
gi|169832265|ref|YP_001718247.1| PilT domain-containing protein ... 63.9 8e-09
gi|322371051|ref|ZP_08045604.1| PilT protein domain protein [Hal... 63.9 8e-09
gi|148265192|ref|YP_001231898.1| PilT domain-containing protein ... 63.5 1e-08
gi|83589542|ref|YP_429551.1| PilT protein-like [Moorella thermoa... 62.0 3e-08
gi|320450297|ref|YP_004202393.1| PilT protein domain-containing ... 60.8 7e-08
gi|57641191|ref|YP_183669.1| nucleic acid-binding protein [Therm... 59.7 2e-07
gi|67920198|ref|ZP_00513718.1| PilT protein, N-terminal [Crocosp... 58.9 2e-07
gi|333980702|ref|YP_004518647.1| PilT protein domain-containing ... 58.5 4e-07
gi|186684861|ref|YP_001868057.1| hypothetical protein Npun_F4763... 58.5 4e-07
gi|333980728|ref|YP_004518673.1| PilT protein domain-containing ... 57.8 5e-07
gi|218246699|ref|YP_002372070.1| hypothetical protein PCC8801_18... 57.0 1e-06
gi|172037762|ref|YP_001804263.1| hypothetical protein cce_2849 [... 56.6 1e-06
gi|335433475|ref|ZP_08558299.1| PilT protein domain protein [Hal... 56.2 2e-06
gi|147679118|ref|YP_001213333.1| nucleic acid-binding protein [P... 55.1 3e-06
gi|166368962|ref|YP_001661235.1| hypothetical protein MAE_62210 ... 55.1 4e-06
gi|196230096|ref|ZP_03128959.1| PilT protein domain protein [Cht... 55.1 4e-06
gi|298530160|ref|ZP_07017562.1| PilT protein domain protein [Des... 54.7 5e-06
gi|335438488|ref|ZP_08561231.1| hypothetical protein HLRTI_15120... 54.7 5e-06
gi|298530119|ref|ZP_07017521.1| PilT protein domain protein [Des... 54.7 5e-06
gi|16330047|ref|NP_440775.1| hypothetical protein sll1715 [Synec... 54.3 5e-06
gi|126657533|ref|ZP_01728689.1| hypothetical protein CY0110_2978... 54.3 7e-06
gi|335433779|ref|ZP_08558595.1| putative PIN domain-containing p... 53.5 9e-06
gi|257052627|ref|YP_003130460.1| PilT protein domain protein [Ha... 53.5 1e-05
gi|153876368|ref|ZP_02003726.1| conserved hypothetical protein [... 53.5 1e-05
gi|166368891|ref|YP_001661164.1| hypothetical protein MAE_61500 ... 53.1 1e-05
gi|333980095|ref|YP_004518040.1| PilT protein domain-containing ... 53.1 1e-05
gi|308270841|emb|CBX27451.1| hypothetical protein N47_H22730 [un... 53.1 1e-05
gi|14521371|ref|NP_126847.1| hypothetical protein PAB1599 [Pyroc... 52.8 2e-05
gi|341582767|ref|YP_004763259.1| nucleic acid-binding protein [T... 52.8 2e-05
gi|218295420|ref|ZP_03496233.1| PilT protein domain protein [The... 52.4 3e-05
gi|119491095|ref|ZP_01623253.1| hypothetical protein L8106_26297... 52.4 3e-05
>gi|15609686|ref|NP_217065.1| hypothetical protein Rv2549c [Mycobacterium tuberculosis H37Rv]
gi|31793732|ref|NP_856225.1| hypothetical protein Mb2579c [Mycobacterium bovis AF2122/97]
gi|121638434|ref|YP_978658.1| hypothetical protein BCG_2572c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
72 more sequence titles
Length=131
Score = 269 bits (687), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 131/131 (100%), Positives = 131/131 (100%), Gaps = 0/131 (0%)
Query 1 MIFVDTSFWAALGNAGDARHGTAKRLWASKPPVVMTSNHVLGETWTLLNRRCGHRAAVAA 60
MIFVDTSFWAALGNAGDARHGTAKRLWASKPPVVMTSNHVLGETWTLLNRRCGHRAAVAA
Sbjct 1 MIFVDTSFWAALGNAGDARHGTAKRLWASKPPVVMTSNHVLGETWTLLNRRCGHRAAVAA 60
Query 61 AAIRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAFDGDF 120
AAIRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAFDGDF
Sbjct 61 AAIRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAFDGDF 120
Query 121 SAAGFVEVRPE 131
SAAGFVEVRPE
Sbjct 121 SAAGFVEVRPE 131
>gi|340627566|ref|YP_004746018.1| hypothetical protein MCAN_25911 [Mycobacterium canettii CIPT
140010059]
gi|340005756|emb|CCC44922.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=131
Score = 266 bits (680), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 129/131 (99%), Positives = 130/131 (99%), Gaps = 0/131 (0%)
Query 1 MIFVDTSFWAALGNAGDARHGTAKRLWASKPPVVMTSNHVLGETWTLLNRRCGHRAAVAA 60
MIFVDTSFWAALGNAGDARHGTA+RLWASKPPVVMTSNHVLGETWTLLNRRCGHRAAVAA
Sbjct 1 MIFVDTSFWAALGNAGDARHGTAQRLWASKPPVVMTSNHVLGETWTLLNRRCGHRAAVAA 60
Query 61 AAIRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAFDGDF 120
AAIRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSF VMRKKGIQNAYAFDGDF
Sbjct 61 AAIRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFVVMRKKGIQNAYAFDGDF 120
Query 121 SAAGFVEVRPE 131
SAAGFVEVRPE
Sbjct 121 SAAGFVEVRPE 131
>gi|289570717|ref|ZP_06450944.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289544471|gb|EFD48119.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
Length=118
Score = 208 bits (530), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 102/102 (100%), Positives = 102/102 (100%), Gaps = 0/102 (0%)
Query 1 MIFVDTSFWAALGNAGDARHGTAKRLWASKPPVVMTSNHVLGETWTLLNRRCGHRAAVAA 60
MIFVDTSFWAALGNAGDARHGTAKRLWASKPPVVMTSNHVLGETWTLLNRRCGHRAAVAA
Sbjct 1 MIFVDTSFWAALGNAGDARHGTAKRLWASKPPVVMTSNHVLGETWTLLNRRCGHRAAVAA 60
Query 61 AAIRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSF 102
AAIRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSF
Sbjct 61 AAIRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSF 102
>gi|169832259|ref|YP_001718241.1| PilT domain-containing protein [Candidatus Desulforudis audaxviator
MP104C]
gi|169639103|gb|ACA60609.1| PilT protein domain protein [Candidatus Desulforudis audaxviator
MP104C]
Length=142
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/128 (43%), Positives = 72/128 (57%), Gaps = 1/128 (0%)
Query 2 IFVDTSFWAALGNAGDARHGTAKRLWASKPPVVMTSNHVLGETWTLLNRRCGHRAAVAAA 61
IFVDTSFW A AGDA H A + P ++TSN V E T+L GH AV
Sbjct 4 IFVDTSFWYAHAFAGDAHHREAAAFLSHVPAPLVTSNFVFDELMTILRYDFGHHVAVKYG 63
Query 62 A-IRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAFDGDF 120
+R S + + + A+ EE AW +++ ++ + F D TSFA+MR+ GI A AFDG F
Sbjct 64 KHLRESKICTLVRLNAEDEETAWALFLKYSDQNFRFTDCTSFALMRRLGINEAAAFDGHF 123
Query 121 SAAGFVEV 128
AAGF +
Sbjct 124 DAAGFTRL 131
>gi|153870703|ref|ZP_02000048.1| conserved hypothetical protein [Beggiatoa sp. PS]
gi|152072837|gb|EDN69958.1| conserved hypothetical protein [Beggiatoa sp. PS]
Length=138
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/129 (35%), Positives = 71/129 (56%), Gaps = 4/129 (3%)
Query 1 MIFVDTSFWAALGNAGDARHGTA---KRLWASKPPVVMTSNHVLGETWTLLNRRCGHRAA 57
+IF+DT+ W A+ + D H A R S +TSN+VL ET+T L + H AA
Sbjct 5 LIFMDTNGWIAINSKRDQLHSKAIKINRKVLSNGYRYVTSNYVLDETYTGLLTKVSHFAA 64
Query 58 VA-AAAIRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAF 116
+ +R S V + H+T D+EE+AW+ ++ ++++SF D TSF +M + + A+
Sbjct 65 IDFGEKLRTSKSVSIIHITTDIEEEAWQIFKQYSDKKFSFTDCTSFVIMNQLNLTEAFTS 124
Query 117 DGDFSAAGF 125
D F GF
Sbjct 125 DHHFEQMGF 133
>gi|147679033|ref|YP_001213248.1| nucleic acid-binding protein [Pelotomaculum thermopropionicum
SI]
gi|146275130|dbj|BAF60879.1| predicted nucleic acid-binding protein [Pelotomaculum thermopropionicum
SI]
Length=135
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/130 (38%), Positives = 74/130 (57%), Gaps = 3/130 (2%)
Query 2 IFVDTSFWAALGNAGDARHGTAKRLWAS--KPPVVMTSNHVLGETWTLLNRRCGHRAAVA 59
IFVDTS W A+ N D H A + K ++T+N V+ ET+ LL CG A+
Sbjct 4 IFVDTSAWVAVTNRCDQYHEAAGTFYKGIFKDHELLTTNLVVAETYILLRLDCGLEVALG 63
Query 60 A-AAIRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAFDG 118
I S V++ + DL +A L R++++ +SF DA SFA+M+K I +A+AFD
Sbjct 64 WWERIASSLKVKIIYADPDLTAEAITILRRYNDQTFSFTDAISFALMKKMKITDAFAFDV 123
Query 119 DFSAAGFVEV 128
F+ AGF+++
Sbjct 124 HFTTAGFIQL 133
>gi|126657325|ref|ZP_01728484.1| hypothetical protein CY0110_00160 [Cyanothece sp. CCY0110]
gi|126621312|gb|EAZ92024.1| hypothetical protein CY0110_00160 [Cyanothece sp. CCY0110]
Length=137
Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/128 (33%), Positives = 62/128 (49%), Gaps = 4/128 (3%)
Query 2 IFVDTSFWAALGNAGDARHGTAKRLWAS---KPPVVMTSNHVLGETWTLLNRRCGHRAAV 58
+F+D S+ AL D H R W + K +++T++++ E T N R H+ AV
Sbjct 5 LFLDVSYLIALELTNDQNHQITLRHWQTLDKKKILLVTTSYIFDEVVTFFNSRSLHQKAV 64
Query 59 AAAAIRL-STVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAFD 117
L S +++ HV DL Q W+ +++++ YS D SF VM K I FD
Sbjct 65 EVGQKLLTSNRIKLIHVDEDLFFQGWDVFEKYEDKSYSLTDCISFVVMHKLDINEVLTFD 124
Query 118 GDFSAAGF 125
F AGF
Sbjct 125 NHFRQAGF 132
>gi|297623199|ref|YP_003704633.1| PilT domain-containing protein [Truepera radiovictrix DSM 17093]
gi|297164379|gb|ADI14090.1| PilT protein domain protein [Truepera radiovictrix DSM 17093]
Length=134
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/132 (39%), Positives = 69/132 (53%), Gaps = 4/132 (3%)
Query 1 MIFVDTSFWAALGNAGDARHGTAKRLW---ASKPPVVMTSNHVLGETWTLLNRRCGHR-A 56
M+FVDTS + A D HG A +W + TSN VL ET TLL RR + A
Sbjct 1 MVFVDTSAFLARYLRNDQFHGAALTIWRGLERSEARLYTSNFVLDETLTLLGRRANYAFA 60
Query 57 AVAAAAIRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAF 116
A AAI S +R+ E A E ++ ++ SF DA SFA+MR+ ++ A++F
Sbjct 61 AERGAAIYASQALRILRPDEADERVALELFAKYADQRVSFTDAVSFALMRRHRLERAFSF 120
Query 117 DGDFSAAGFVEV 128
D F+ AGF V
Sbjct 121 DRHFAHAGFAVV 132
>gi|169830613|ref|YP_001716595.1| PilT domain-containing protein [Candidatus Desulforudis audaxviator
MP104C]
gi|169637457|gb|ACA58963.1| PilT protein domain protein [Candidatus Desulforudis audaxviator
MP104C]
Length=141
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/128 (35%), Positives = 67/128 (53%), Gaps = 4/128 (3%)
Query 1 MIFVDTSFWAALGNAGDARHGTAKRLWAS---KPPVVMTSNHVLGETWTLLNRRCGHRAA 57
M+++DTS A+ +A D H AK W S +++ SN++L ET+ L+ RR G A
Sbjct 2 MVYLDTSAILAVLDADDQYHNVAKTQWKSLLHSDTILVCSNYILVETYALVQRRLG-MGA 60
Query 58 VAAAAIRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAFD 117
V + + +VRV V + ++ +E S VD SF VMR+ GI+ A+ FD
Sbjct 61 VRLLSTDIEPIVRVIWVDEQTHRRGEAAVIAAQRKELSLVDCVSFVVMRQAGIREAFTFD 120
Query 118 GDFSAAGF 125
F+ GF
Sbjct 121 RHFAEQGF 128
>gi|153873579|ref|ZP_02002115.1| conserved hypothetical protein [Beggiatoa sp. PS]
gi|152069952|gb|EDN67882.1| conserved hypothetical protein [Beggiatoa sp. PS]
Length=139
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/134 (33%), Positives = 71/134 (53%), Gaps = 7/134 (5%)
Query 2 IFVDTSFWAALGNAGDARHGTAKRL---WASKPPVVMTSNHVLGETWTLLNRRCGHRAAV 58
IFVDT W AL + DA H A++ + + +T+N++L E+ TL+ + H A+
Sbjct 5 IFVDTWAWYALADKNDADHALAEKTNKQLLDEGYLFVTTNNILSESVTLIRYKLNHTIAL 64
Query 59 A----AAAIRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAY 114
++ S ++ V V E++AWE ++ ++E+S VD TSFAVM+ G +
Sbjct 65 KFWNLIQSLVKSGILEVVRVNEWHEQKAWEIFEKYHDQEFSLVDCTSFAVMQDLGSSEVF 124
Query 115 AFDGDFSAAGFVEV 128
D FS GF+ V
Sbjct 125 TGDHHFSIMGFIRV 138
>gi|83590603|ref|YP_430612.1| hypothetical protein Moth_1768 [Moorella thermoacetica ATCC 39073]
gi|83573517|gb|ABC20069.1| conserved hypothetical protein [Moorella thermoacetica ATCC 39073]
Length=135
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/128 (35%), Positives = 68/128 (54%), Gaps = 4/128 (3%)
Query 2 IFVDTSFWAALGNAGDARHGTAKRLWAS---KPPVVMTSNHVLGETWTLLNRRCGHRAAV 58
+FVDTS W A+ N D H A + + ++T+N V ET+ LL G A+
Sbjct 4 LFVDTSAWVAVVNRRDQYHTIAAPFYKKALKEYGQLLTTNLVAAETYVLLRLDSGLDVAL 63
Query 59 AA-AAIRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAFD 117
I S ++V ++ +D+ +A + L + D++ +S DA SF VM + GI+ A+AFD
Sbjct 64 GWWEKISASLKIQVVYIDSDITTEAVKLLRKFDDQTFSLTDAVSFKVMERGGIEEAFAFD 123
Query 118 GDFSAAGF 125
F AGF
Sbjct 124 VHFKVAGF 131
>gi|268323933|emb|CBH37521.1| conserved hypothetical protein, PIN domain family [uncultured
archaeon]
Length=140
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/129 (35%), Positives = 68/129 (53%), Gaps = 5/129 (3%)
Query 2 IFVDTSFWAALGNAGDARHGTAKRLWASKPPVV-MTSNHVLGETWTLLNRRCGHRAAVA- 59
+F+DT+ W AL + D H AK ++ S + MT++ VL ET + ++ A+A
Sbjct 7 VFIDTAGWVALIYSHDDYHQRAKHVYVSLEQMKRMTTDAVLIETCNMFSKMPLRPLAIAL 66
Query 60 AAAIRLST---VVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAF 116
IR + V+ V HVT L ++ WE R ++++S D SF VM+ KGI A+
Sbjct 67 IEKIREAEKLGVLEVTHVTEALIDRGWELFQRRPDKDWSLTDCISFVVMQDKGITKAFTT 126
Query 117 DGDFSAAGF 125
D F AGF
Sbjct 127 DHHFEQAGF 135
>gi|159028039|emb|CAO87999.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length=136
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/130 (31%), Positives = 64/130 (50%), Gaps = 4/130 (3%)
Query 3 FVDTSFWAALGNAGDARHGTAKRLW---ASKPPVVMTSNHVLGETWTLLNRRCGHRAAVA 59
F+DTS+ AL A + H + W A P ++T+ +V ET T N R H AV
Sbjct 6 FLDTSYIIALEIANEDAHEQVLQNWLTLALSKPFLVTTTYVFDETVTFFNSRNLHGKAVE 65
Query 60 AAA-IRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAFDG 118
+R S + + + DL ++ W++ ++ ++ YS D SF VM + I A + D
Sbjct 66 IGKRLRESPDIELIEIDRDLFDRGWQYFQKYQDKSYSLTDCLSFIVMENRRIFTALSLDN 125
Query 119 DFSAAGFVEV 128
F AGF ++
Sbjct 126 HFLQAGFQKL 135
>gi|220907518|ref|YP_002482829.1| PilT protein domain-containing protein [Cyanothece sp. PCC 7425]
gi|219864129|gb|ACL44468.1| PilT protein domain protein [Cyanothece sp. PCC 7425]
Length=138
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/136 (34%), Positives = 72/136 (53%), Gaps = 7/136 (5%)
Query 2 IFVDTSFWAALGNAGDARHGTAKRLWASKPPV-VMTSNHVLGETWTLLNRRCGHRAAVAA 60
IFVDTS +AAL ++ D H A + V ++TSN+VL E TLL G+ V
Sbjct 4 IFVDTSAFAALADSRDDNHARAVAFNKTISGVALVTSNYVLDELHTLLLMNVGYGKTVQF 63
Query 61 A----AIRLSTVVRVEHVTADLEEQAWEWLVRHD-EREYSFVDATSFAVMRKKGIQNAYA 115
+ ++ V ++ ++ EQ W+ + + ++E+SF D TS+ VM+ I A+
Sbjct 64 KHKLDLLIAKQILSVIWISEEIAEQTWKVFEQFNTDKEWSFTDCTSYVVMKNHNITEAFT 123
Query 116 FDGDFSAAGFVEVRPE 131
FD FS GF+ RP+
Sbjct 124 FDHHFSQMGFIR-RPD 138
>gi|301063440|ref|ZP_07203972.1| toxin-antitoxin system, toxin component, PIN family [delta proteobacterium
NaphS2]
gi|300442379|gb|EFK06612.1| toxin-antitoxin system, toxin component, PIN family [delta proteobacterium
NaphS2]
Length=134
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/128 (34%), Positives = 66/128 (52%), Gaps = 4/128 (3%)
Query 2 IFVDTSFWAALGNAGDARHGTAKRL---WASKPPVVMTSNHVLGETWTLLNRRCGHRAAV 58
+FVDT+ W ++ ++ D H + W +++ SN+V+ ET TL+ R G AA
Sbjct 1 MFVDTAGWMSMADSRDPMHVPCRNTRDQWLEAGGMLILSNYVVDETLTLIRVRLGLEAAE 60
Query 59 AA-AAIRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAFD 117
+ S R+E VT D E+A W + ++ +SF D TSF +M++ IQ A D
Sbjct 61 QWWNQVWESPRCRMEWVTPDRGERALRWFFKWRDQPFSFTDCTSFVLMKELQIQKALTTD 120
Query 118 GDFSAAGF 125
F AGF
Sbjct 121 HHFRTAGF 128
>gi|153877960|ref|ZP_02004431.1| PilT-like protein [Beggiatoa sp. PS]
gi|152065576|gb|EDN65569.1| PilT-like protein [Beggiatoa sp. PS]
Length=140
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/133 (32%), Positives = 65/133 (49%), Gaps = 6/133 (4%)
Query 2 IFVDTSFWAALGNAGDARHGTAKRL---WASKPPVVMTSNHVLGETWTLLN---RRCGHR 55
+FVDTS WA + + AKRL W S V+T+N+VL E LL R +
Sbjct 6 VFVDTSGWAEFLVQTEPFYLKAKRLMQQWYSDGTPVITTNYVLLELVALLTSPLRIPRDQ 65
Query 56 AAVAAAAIRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYA 115
I+ S+ V + H+ +++ W+ L ++ +S VD TSF +M++ I A
Sbjct 66 QIQVIETIKTSSWVTIIHLDRTMDKMGWKLLTERQDKTWSLVDCTSFVIMQQHKILEALT 125
Query 116 FDGDFSAAGFVEV 128
D F AGF+ +
Sbjct 126 TDHHFEQAGFIRL 138
>gi|88602642|ref|YP_502820.1| hypothetical protein Mhun_1361 [Methanospirillum hungatei JF-1]
gi|88188104|gb|ABD41101.1| conserved hypothetical protein [Methanospirillum hungatei JF-1]
Length=141
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/128 (33%), Positives = 61/128 (48%), Gaps = 4/128 (3%)
Query 2 IFVDTSFWAALGNAGDARHGTAKRLWA---SKPPVVMTSNHVLGETWTLL-NRRCGHRAA 57
IFVD + W AL N D+ H L+ K V +T++ ++ ET L N +
Sbjct 8 IFVDIACWFALLNQKDSLHIITNILYQDLMKKGSVFVTTSSIIEETSNALSNPKFRSSLI 67
Query 58 VAAAAIRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAFD 117
I S V + HV +L E+ W + D++ +SF D SF VM ++ I+NA D
Sbjct 68 TFYHNICRSPRVPILHVDPELWEKGWRLFYKRDDKNWSFTDCVSFVVMNERSIKNALTSD 127
Query 118 GDFSAAGF 125
F AGF
Sbjct 128 KHFIQAGF 135
>gi|67922827|ref|ZP_00516326.1| similar to nucleic acid-binding protein contains PIN domain [Crocosphaera
watsonii WH 8501]
gi|67855320|gb|EAM50580.1| similar to nucleic acid-binding protein contains PIN domain [Crocosphaera
watsonii WH 8501]
Length=131
Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/131 (30%), Positives = 63/131 (49%), Gaps = 1/131 (0%)
Query 1 MIFVDTSFWAALGNAGDARHGTAKRLWASKPPVVMTSNHVLGETWTLLN-RRCGHRAAVA 59
MIFVDTS W A D H + + ++T+++V+ ET TLL R+ RA
Sbjct 1 MIFVDTSAWFASVVPSDPDHQILSQWFNQNTETLLTTDYVIDETLTLLRIRKETLRATAL 60
Query 60 AAAIRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAFDGD 119
A + R+ ++T + +Q W+ + ++ +SF D +S ++ K I+ A D
Sbjct 61 GEAFFSGKLTRIYYLTPEDIQQTWQTFEKFSDKNWSFTDCSSKWIIEKLKIKKALTLDHH 120
Query 120 FSAAGFVEVRP 130
F G V V P
Sbjct 121 FQQFGSVLVLP 131
>gi|333980750|ref|YP_004518695.1| PilT protein domain-containing protein [Desulfotomaculum kuznetsovii
DSM 6115]
gi|333824231|gb|AEG16894.1| PilT protein domain protein [Desulfotomaculum kuznetsovii DSM
6115]
Length=131
Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/128 (39%), Positives = 67/128 (53%), Gaps = 8/128 (6%)
Query 2 IFVDTSFWAALGNAGDARHGTA----KRLWASKPPVVMTSNHVLGETWTLLNRRCGHRAA 57
+ VD+S AL N D H TA L + +VMT N ++ ET TLL R GH A
Sbjct 3 LLVDSSAVLALLNNRDQWHQTAITVLHHLVNNNSALVMT-NFLIAETHTLLLTRLGHDIA 61
Query 58 VAAAAIRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAFD 117
VVRV + + E+ A E + ++ ++++SF DATSFAVM + GI A+ FD
Sbjct 62 REWLLTFDWNVVRV---SPEDEQTAREIIKKYRDKDFSFTDATSFAVMYRYGINLAFTFD 118
Query 118 GDFSAAGF 125
F GF
Sbjct 119 RHFKQYGF 126
>gi|169832265|ref|YP_001718247.1| PilT domain-containing protein [Candidatus Desulforudis audaxviator
MP104C]
gi|169639109|gb|ACA60615.1| PilT protein domain protein [Candidatus Desulforudis audaxviator
MP104C]
Length=132
Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/132 (35%), Positives = 72/132 (55%), Gaps = 8/132 (6%)
Query 2 IFVDTSFWAALGNAGDARHGTAKRLW----ASKPPVVMTSNHVLGETWTLLNRRCGHRAA 57
+ VDTS AL + D RH AK+L + P+++T N V+ E L+ R G
Sbjct 4 VMVDTSAVYALLDRSDKRHAQAKKLLHHLRVTSAPILLT-NFVVAECHALIAGRLG--PD 60
Query 58 VAAAAIRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAFD 117
+ A +R V VE VT + E +A E ++ ++++ +S+ DAT+FA+M + I +AFD
Sbjct 61 LGRAWLR-GLVWPVERVTEEDENRAREIILTYEDKSFSYTDATTFALMERLNIGTVFAFD 119
Query 118 GDFSAAGFVEVR 129
F+ GF +R
Sbjct 120 IHFAQFGFRLLR 131
>gi|322371051|ref|ZP_08045604.1| PilT protein domain protein [Haladaptatus paucihalophilus DX253]
gi|320549486|gb|EFW91147.1| PilT protein domain protein [Haladaptatus paucihalophilus DX253]
Length=144
Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/132 (34%), Positives = 64/132 (49%), Gaps = 5/132 (3%)
Query 2 IFVDTSFWAALGNAGDARHGTAKRLWASKPP----VVMTSNHVLGETWTLLNRRCGHRAA 57
+FVDT A + D H TA ++ V TS +VL E TL+ + GH AA
Sbjct 7 LFVDTGGLYAAFDEDDVNHDTANAVFDGMEEGEYGPVFTSRYVLSEFATLMLYQIGHTAA 66
Query 58 VAA-AAIRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAF 116
+ A + +R S + V A + R D+++ SFVD TS + R+ I++ +AF
Sbjct 67 IEALSTVRQSKTFNILPVGKQTFNAACDEFERFDDQQISFVDQTSAVLAREHEIEHLFAF 126
Query 117 DGDFSAAGFVEV 128
D DF GF V
Sbjct 127 DSDFRTMGFERV 138
>gi|148265192|ref|YP_001231898.1| PilT domain-containing protein [Geobacter uraniireducens Rf4]
gi|146398692|gb|ABQ27325.1| PilT protein domain protein [Geobacter uraniireducens Rf4]
Length=133
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/127 (34%), Positives = 61/127 (49%), Gaps = 4/127 (3%)
Query 2 IFVDTSFWAALGNAGDARHGTAKRLWA---SKPPVVMTSNHVLGETWTLLNRRCGHRAAV 58
IF+DTS + A+ + DA H K W S +++T+N+VL ET+ L+ R G AA
Sbjct 3 IFIDTSGFLAVLDRDDASHARVKNAWVDMLSSDDLLVTTNYVLVETFALVQTRLG-LAAT 61
Query 59 AAAAIRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAFDG 118
+ V++ E + L A ++ R+ S VD SF MR GI A+ D
Sbjct 62 KVFQEDIVPVLQTEWIDKTLHSAAVGIMLSASRRKLSLVDCVSFETMRLLGITTAFTLDK 121
Query 119 DFSAAGF 125
F GF
Sbjct 122 RFREQGF 128
>gi|83589542|ref|YP_429551.1| PilT protein-like [Moorella thermoacetica ATCC 39073]
gi|83572456|gb|ABC19008.1| PilT protein-like protein [Moorella thermoacetica ATCC 39073]
Length=132
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/126 (32%), Positives = 67/126 (54%), Gaps = 6/126 (4%)
Query 2 IFVDTSFWAALGNAGDARHGTAKRLW---ASKPPVVMTSNHVLGETWTLLNRRCGHRAAV 58
I VDTS AL + D RH AK L+ + + ++ +N +L ET L+ GH A
Sbjct 4 IMVDTSAIYALIDRSDDRHEKAKHLFKKLSEQDVDLILTNFILAETHALILSCIGHELAR 63
Query 59 AAAAIRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAFDG 118
+ + ++E V + E++A E ++ + ++ +S+ DAT+FAVM + + A AFD
Sbjct 64 EWVK---NLIWKIERVKEEDEKRAREIIIAYQDKSFSYTDATTFAVMERLKLNIALAFDN 120
Query 119 DFSAAG 124
F+ G
Sbjct 121 HFTQFG 126
>gi|320450297|ref|YP_004202393.1| PilT protein domain-containing protein [Thermus scotoductus SA-01]
gi|320150466|gb|ADW21844.1| PilT protein domain protein [Thermus scotoductus SA-01]
Length=133
Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/132 (37%), Positives = 67/132 (51%), Gaps = 6/132 (4%)
Query 2 IFVDTSFWAALGNAGDARHGTA----KRLWASKPPVVMTSNHVLGETWTLLNRRCGHRAA 57
+FVDTS AL + DA H A +RL A + +V T ++V+ E+ L+ RR G A
Sbjct 3 VFVDTSALYALLDRDDAHHEEAAEAFRRLLADRVRLV-THSYVVVESVALVQRRLGLEAV 61
Query 58 VAAAAIRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAFD 117
A L V+ + V DL + A L+ ++ S VD TSF M+ KG++ A AFD
Sbjct 62 RALCHDLLGVVLSIP-VDGDLHQVALTALLASGRKDISLVDWTSFFFMQGKGLRKALAFD 120
Query 118 GDFSAAGFVEVR 129
F GF R
Sbjct 121 EHFWEQGFSPAR 132
>gi|57641191|ref|YP_183669.1| nucleic acid-binding protein [Thermococcus kodakarensis KOD1]
gi|57159515|dbj|BAD85445.1| predicted nucleic acid-binding protein, containing PIN domain
[Thermococcus kodakarensis KOD1]
Length=141
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/130 (33%), Positives = 64/130 (50%), Gaps = 5/130 (3%)
Query 1 MIFVDTSFWAALGNAGDARHGTA---KRLWASKPPVVMTSNHVLGETWTLLNRRCGHRAA 57
+I++DTS AL N D H A R + + S VL E L++R G A
Sbjct 8 VIYLDTSALIALFNRNDKNHERAVSYLREALESGNLFLLSRPVLMEYLNGLSKRYGKEIA 67
Query 58 VAAA-AIRLSTVVRVEHVTADLEEQAWEWLVRH-DEREYSFVDATSFAVMRKKGIQNAYA 115
A+ S+ V +E+ T +AWE+ ++ D+R D+ SFA+M + G++ A+
Sbjct 68 KENYDALTSSSFVYIENETEADWRKAWEFFFKYRDQRGIDLFDSLSFAIMERLGLKTAFT 127
Query 116 FDGDFSAAGF 125
FD DF GF
Sbjct 128 FDSDFEVHGF 137
>gi|67920198|ref|ZP_00513718.1| PilT protein, N-terminal [Crocosphaera watsonii WH 8501]
gi|67857682|gb|EAM52921.1| PilT protein, N-terminal [Crocosphaera watsonii WH 8501]
Length=134
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/126 (31%), Positives = 58/126 (47%), Gaps = 3/126 (2%)
Query 2 IFVDTSFWAALGNAGDARHGTAKRL--WASKPPVVMTSNHVLGETWTLLNRRCGHRAAVA 59
IFVDT F AL N D H A +L P++ T++ VL + L + A
Sbjct 5 IFVDTLFIVALINKRDQYHPKALKLAQQVENYPLI-TTDAVLLQVGNSLAGNYRNEAINI 63
Query 60 AAAIRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAFDGD 119
S + + H+T +L +A E ++ ++++ VD SF VM + I A FD
Sbjct 64 IEIFLQSDDIEIIHLTPELFNKAIELYKKYQDKQWGLVDCVSFVVMEENNINKALTFDKH 123
Query 120 FSAAGF 125
F AGF
Sbjct 124 FIQAGF 129
>gi|333980702|ref|YP_004518647.1| PilT protein domain-containing protein [Desulfotomaculum kuznetsovii
DSM 6115]
gi|333824183|gb|AEG16846.1| PilT protein domain protein [Desulfotomaculum kuznetsovii DSM
6115]
Length=134
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/127 (34%), Positives = 65/127 (52%), Gaps = 6/127 (4%)
Query 2 IFVDTSFWAALGNAGDARHGTAKRLW---ASKPPVVMTSNHVLGETWTLLNRRCGHRAAV 58
I VDTS AL + D H A + ++K V+ +N ++ E LL R +
Sbjct 4 IMVDTSAIYALLDRSDNMHQQAVSILKELSTKSVAVVITNFIVAECHALLVSRLS--PEI 61
Query 59 AAAAIRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAFDG 118
A A ++ VE V + E +A E + + ++ +SF DAT+FAVM + GI +A+AFD
Sbjct 62 ARAWLK-GLCWPVERVNEEDENRAREIIFTYSDKSFSFTDATTFAVMERLGISSAFAFDR 120
Query 119 DFSAAGF 125
F GF
Sbjct 121 HFIQFGF 127
>gi|186684861|ref|YP_001868057.1| hypothetical protein Npun_F4763 [Nostoc punctiforme PCC 73102]
gi|186467313|gb|ACC83114.1| conserved hypothetical protein [Nostoc punctiforme PCC 73102]
Length=141
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/133 (36%), Positives = 70/133 (53%), Gaps = 14/133 (10%)
Query 2 IFVDTSFWAALGNAGDARHG----TAKRLWASKPPVVMTSNHVLGETWTLLNRRCGHRAA 57
+F+DTSF AL D H AK L A++ +V T+ V+ E L+++ +AA
Sbjct 5 VFLDTSFAIALSAPSDRLHDRALHLAKMLQAAETHLV-TTQAVMLEIGNALSQQPYRQAA 63
Query 58 VAAAAIRLSTVV---RVEHV--TADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQN 112
+ I L+++V +VE V + +L E+A+E E+E+ FVD SF VM+ GI
Sbjct 64 I----ILLNSLVADSKVEIVPLSQELYERAFELYRERTEKEWGFVDCVSFIVMQYSGITE 119
Query 113 AYAFDGDFSAAGF 125
A D F AGF
Sbjct 120 ALTADEHFQQAGF 132
>gi|333980728|ref|YP_004518673.1| PilT protein domain-containing protein [Desulfotomaculum kuznetsovii
DSM 6115]
gi|333824209|gb|AEG16872.1| PilT protein domain protein [Desulfotomaculum kuznetsovii DSM
6115]
Length=140
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/122 (32%), Positives = 60/122 (50%), Gaps = 4/122 (3%)
Query 2 IFVDTSFWAALGNAGDARHGTAKRLW---ASKPPVVMTSNHVLGETWTLLNRRCGHRAAV 58
I VDT W A+ + D H A+ + A + P+ +T+ +L ETW LL R G AA
Sbjct 3 IMVDTGAWYAVCDISDRNHERARNFYEKVAGEVPL-LTTIAILVETWALLAARLGRHAAQ 61
Query 59 AAAAIRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAFDG 118
+ T V + E AW+ + ++++SF D T+FAVM + I+ + FD
Sbjct 62 TFWQMLRETGTPVIALEQPDLEAAWQIMHAFPDQDFSFTDCTTFAVMERLRIERVFTFDR 121
Query 119 DF 120
F
Sbjct 122 HF 123
>gi|218246699|ref|YP_002372070.1| hypothetical protein PCC8801_1872 [Cyanothece sp. PCC 8801]
gi|257059741|ref|YP_003137629.1| nucleic acid-binding protein contains PIN domain-like protein
[Cyanothece sp. PCC 8802]
gi|218167177|gb|ACK65914.1| conserved hypothetical protein [Cyanothece sp. PCC 8801]
gi|256589907|gb|ACV00794.1| nucleic acid-binding protein contains PIN domain-like protein
[Cyanothece sp. PCC 8802]
Length=134
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/127 (31%), Positives = 58/127 (46%), Gaps = 5/127 (3%)
Query 2 IFVDTSFWAALGNAGDARHGTAKRL---WASKPPVVMTSNHVLGETWTLLNRRCGHRAAV 58
+FVDT F AL N D H A +L + + P ++T++ +L E L+ A
Sbjct 5 VFVDTWFLVALINKRDQYHTVALQLAQQFDNYP--LITTDAILLEFGNALSNNYKKEAVK 62
Query 59 AAAAIRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAFDG 118
S V + +T DL QA H ++ + VD SF VM++ + A FD
Sbjct 63 LIETFLNSDDVELIRLTPDLFNQALSLYKNHQDKSWGLVDCFSFVVMKQNQVTQALTFDK 122
Query 119 DFSAAGF 125
F+ AGF
Sbjct 123 HFTQAGF 129
>gi|172037762|ref|YP_001804263.1| hypothetical protein cce_2849 [Cyanothece sp. ATCC 51142]
gi|171699216|gb|ACB52197.1| hypothetical protein cce_2849 [Cyanothece sp. ATCC 51142]
Length=139
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/81 (38%), Positives = 40/81 (50%), Gaps = 1/81 (1%)
Query 46 TLLNRRCGHRAAVAAAAIRL-STVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAV 104
T LN R H+ AV L S +++ HV DL Q W+ +++++ YS D SF V
Sbjct 23 TFLNSRYLHQKAVEVGQKLLTSNKIQLIHVDEDLFFQGWDVFEKYEDKSYSLTDCISFVV 82
Query 105 MRKKGIQNAYAFDGDFSAAGF 125
M K I FD F AGF
Sbjct 83 MHKLDINEVLTFDNHFRQAGF 103
>gi|335433475|ref|ZP_08558299.1| PilT protein domain protein [Halorhabdus tiamatea SARL4B]
gi|335433568|ref|ZP_08558388.1| PilT protein domain protein [Halorhabdus tiamatea SARL4B]
gi|334898574|gb|EGM36678.1| PilT protein domain protein [Halorhabdus tiamatea SARL4B]
gi|334898748|gb|EGM36848.1| PilT protein domain protein [Halorhabdus tiamatea SARL4B]
Length=150
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/136 (31%), Positives = 65/136 (48%), Gaps = 11/136 (8%)
Query 2 IFVDTSFWAALGNAGDARHGTAKRL--------WASKPPVVMTSNHVLGETWTLLNRRCG 53
+FVDT+ + A+ N D H A L +A P + TS +VL ET T L G
Sbjct 10 LFVDTNAFVAVFNEDDTHHDAATELLDGIGAGEYAYGP--LYTSRYVLSETATTLLYGVG 67
Query 54 HRAAV-AAAAIRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQN 112
H AV A A +R S+ + + V + + ++D++ SF+D + + + I +
Sbjct 68 HAEAVEAVATVRDSSSINLIDVDPHRFDVTVKQFEQYDDQSISFIDHMNATLAEEYDISH 127
Query 113 AYAFDGDFSAAGFVEV 128
+AFD DF+ G V
Sbjct 128 IFAFDDDFATLGLTRV 143
>gi|147679118|ref|YP_001213333.1| nucleic acid-binding protein [Pelotomaculum thermopropionicum
SI]
gi|146275215|dbj|BAF60964.1| predicted nucleic acid-binding protein [Pelotomaculum thermopropionicum
SI]
Length=141
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/134 (32%), Positives = 64/134 (48%), Gaps = 6/134 (4%)
Query 2 IFVDTSFWAALGNAGDARHGTAKRLWASKPPVVM--TSNHVLGETWTLLNRRC-GHRAAV 58
+FVDT W AL ++ D H A + V+ TS++V E TL+ R HR A
Sbjct 4 VFVDTGAWYALKDSRDPHHQEAIDFFTGMQGQVLCFTSDYVADEAITLVRYRLKNHRVAS 63
Query 59 AAA-AIRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAFD 117
A + ++ V+ +A E ++ +S+ D TSFA+M GI+ A AFD
Sbjct 64 DLARELFAEKAAKMIFVSFRHHTRALEIFTAFSDQLFSYTDCTSFAIMETMGIEEALAFD 123
Query 118 GDFS--AAGFVEVR 129
F+ GF ++R
Sbjct 124 SHFTFEKFGFRQIR 137
>gi|166368962|ref|YP_001661235.1| hypothetical protein MAE_62210 [Microcystis aeruginosa NIES-843]
gi|166091335|dbj|BAG06043.1| hypothetical protein MAE_62210 [Microcystis aeruginosa NIES-843]
Length=136
Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/129 (30%), Positives = 59/129 (46%), Gaps = 4/129 (3%)
Query 2 IFVDTSFWAALGNAGDARHGTAKRLWASKPPV-VMTSNHVLGETWTLLNRRCGHRAAVAA 60
IF DT +W AL N D H A+ + +S V ++T++ VL E ++ R +R
Sbjct 4 IFADTFYWVALINPQDNWHQRAREVTSSLKNVKLVTTDEVLVELLNFMSVRGANRKRRTV 63
Query 61 AAIR-LSTVVRVEHVTADLEE--QAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAFD 117
I L R++ + + E Q +E R ++EYS D S VM++ I D
Sbjct 64 EFIDDLLQNPRLQVIPQNRESFLQGFELYRRRPDKEYSLTDCISMTVMQRLKISQVLTHD 123
Query 118 GDFSAAGFV 126
F GF+
Sbjct 124 NHFQQEGFI 132
>gi|196230096|ref|ZP_03128959.1| PilT protein domain protein [Chthoniobacter flavus Ellin428]
gi|196225693|gb|EDY20200.1| PilT protein domain protein [Chthoniobacter flavus Ellin428]
Length=136
Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/128 (32%), Positives = 59/128 (47%), Gaps = 4/128 (3%)
Query 2 IFVDTSFWAALGNAGDARHGTAKRLW---ASKPPVVMTSNHVLGETWTLLNRRCGHRAAV 58
+F+DT + A D H A W A + ++ HVL ET TLL RR + A
Sbjct 4 LFIDTGAFLARELTHDQHHSAATEGWQMLADSDDRLFSTEHVLDETITLLARRESYAFAA 63
Query 59 AAAAIRL-STVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAFD 117
AA L S + D +A + + ++ ++ SF D SF +MR++ I + FD
Sbjct 64 ECAATYLQSKAIEWLRPGMDDYNKAVKLMRKYADQSVSFTDCISFVLMRRESITRIFGFD 123
Query 118 GDFSAAGF 125
F AA F
Sbjct 124 RHFQAAQF 131
>gi|298530160|ref|ZP_07017562.1| PilT protein domain protein [Desulfonatronospira thiodismutans
ASO3-1]
gi|298509534|gb|EFI33438.1| PilT protein domain protein [Desulfonatronospira thiodismutans
ASO3-1]
Length=133
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/129 (35%), Positives = 59/129 (46%), Gaps = 4/129 (3%)
Query 1 MIFVDTSFWAALGNAGDARHGTAKRLWASKPPV---VMTSNHVLGETWTLLNRRCGH-RA 56
MIFVDT A D H A +WA + TS+ VL ET TLL RR G+ A
Sbjct 1 MIFVDTGPLLARYLLKDQFHQHALNIWAELEKSHERLATSSLVLNETATLLGRRTGNIFA 60
Query 57 AVAAAAIRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAF 116
A I S ++ + E +A + + ++ SF D SFA+M K + + F
Sbjct 61 AERLNNIYASHAFQIWRPDREDELRALKLFAKFSDQVVSFTDCVSFALMTSKHVPQVFTF 120
Query 117 DGDFSAAGF 125
D F AGF
Sbjct 121 DRHFDLAGF 129
>gi|335438488|ref|ZP_08561231.1| hypothetical protein HLRTI_15120 [Halorhabdus tiamatea SARL4B]
gi|334891533|gb|EGM29780.1| hypothetical protein HLRTI_15120 [Halorhabdus tiamatea SARL4B]
Length=149
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/137 (32%), Positives = 67/137 (49%), Gaps = 12/137 (8%)
Query 2 IFVDTSFWAALGNAGDARHGTAKRLW--------ASKPPVVMTSNHVLGETWTLLNRRCG 53
+F+DT+ + A N H A+ ++ A P + TS +VL E TLL R+ G
Sbjct 8 LFIDTAAFFARFNERATEHDRARTVFRGVQTGELAYDP--LFTSRYVLSELATLLLRKVG 65
Query 54 HRAAV-AAAAIRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQN 112
H AV A A IR + V + ++ E R+D+++ SFVD TS + + +++
Sbjct 66 HGPAVNALATIREADSFNVLPMAGRSFDRTCEQFGRYDDQQISFVDHTSAVLASDRDVEH 125
Query 113 AYAFD-GDFSAAGFVEV 128
+ FD DF GF V
Sbjct 126 VFTFDRDDFRTLGFTVV 142
>gi|298530119|ref|ZP_07017521.1| PilT protein domain protein [Desulfonatronospira thiodismutans
ASO3-1]
gi|298509493|gb|EFI33397.1| PilT protein domain protein [Desulfonatronospira thiodismutans
ASO3-1]
Length=133
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/129 (34%), Positives = 59/129 (46%), Gaps = 4/129 (3%)
Query 1 MIFVDTSFWAALGNAGDARHGTAKRLWASKPPV---VMTSNHVLGETWTLLNRRCGH-RA 56
MIFVDT A D H A +WA + TS+ VL ET TLL RR G+ A
Sbjct 1 MIFVDTGPLLARYLLKDQFHQHALNIWAELEKSHERLATSSLVLNETATLLGRRAGNIFA 60
Query 57 AVAAAAIRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAF 116
A I S ++ + E +A + + ++ SF D SF +M + +Q + F
Sbjct 61 AERLNNIYASHAFQIWRPDREDELRALKLFAKFSDQVVSFTDCVSFTLMTSRHVQQVFTF 120
Query 117 DGDFSAAGF 125
D F AGF
Sbjct 121 DRHFDLAGF 129
>gi|16330047|ref|NP_440775.1| hypothetical protein sll1715 [Synechocystis sp. PCC 6803]
gi|1652534|dbj|BAA17455.1| sll1715 [Synechocystis sp. PCC 6803]
gi|339273142|dbj|BAK49629.1| hypothetical protein SYNGTS_0881 [Synechocystis sp. PCC 6803]
Length=157
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/129 (30%), Positives = 65/129 (51%), Gaps = 6/129 (4%)
Query 2 IFVDTSFWAALGNAGDARH----GTAKRLWASKPPVVMTSNHVLGETWTLLNRRCGHRAA 57
+F+DTSF AL + D H A ++ A+K +V T+ +L E L+++ +AA
Sbjct 24 VFLDTSFAIALSSITDQNHVRAIQLANQIEANKIRLV-TTQGILLEIGNALSKQRYRKAA 82
Query 58 VAAA-AIRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAF 116
+ ++ V V +T L + A+ + +++E+ VD SF VM+ +GI +
Sbjct 83 IQLLESLETDPSVEVVLLTNSLYKSAFNLFKQREDKEWGLVDCISFIVMQDRGITDVLTA 142
Query 117 DGDFSAAGF 125
D F AGF
Sbjct 143 DIHFQQAGF 151
>gi|126657533|ref|ZP_01728689.1| hypothetical protein CY0110_29784 [Cyanothece sp. CCY0110]
gi|126621237|gb|EAZ91950.1| hypothetical protein CY0110_29784 [Cyanothece sp. CCY0110]
Length=134
Score = 54.3 bits (129), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/126 (30%), Positives = 55/126 (44%), Gaps = 1/126 (0%)
Query 1 MIFVDTSFWAALGNAGDARHGTAKRLWASKPPV-VMTSNHVLGETWTLLNRRCGHRAAVA 59
+IF+DT F L D H A L +T+N VL E + R +A
Sbjct 4 LIFIDTGFVIGLIYEQDQYHQQAINLSIKYEQYSFITTNAVLLELGNPVVRHSKPKAIKI 63
Query 60 AAAIRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAFDGD 119
S V + ++T L E+A+ +++++ + VD SF +M K I FD
Sbjct 64 IEDFYTSDNVNIINLTTQLFEEAFNLYKQYEDKTWGLVDCLSFIIMWKLNINKVLTFDKH 123
Query 120 FSAAGF 125
FS AGF
Sbjct 124 FSQAGF 129
>gi|335433779|ref|ZP_08558595.1| putative PIN domain-containing protein [Halorhabdus tiamatea
SARL4B]
gi|334898417|gb|EGM36525.1| putative PIN domain-containing protein [Halorhabdus tiamatea
SARL4B]
Length=144
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/131 (32%), Positives = 63/131 (49%), Gaps = 12/131 (9%)
Query 2 IFVDTSFWAALGNAGDARHGTAK----RLWASKPPVVMTSNHVLGETWTLLNRRCGHRAA 57
+F+D+ + AL N RH AK + +S+ V TS++V ET TL+ R G
Sbjct 3 VFLDSGLFYALQNERATRHKAAKAAFESVLSSEYGRVFTSDYVFDETVTLVRTRTGSYDE 62
Query 58 VAAAAIRL-------STVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGI 110
A R+ S + + AD E +A E R+ + + SF DAT+ A++ + I
Sbjct 63 AKQVADRILGRGPFPSAIDFLVTDRADFE-RAVEAFNRYHDHDLSFTDATTIALVEARDI 121
Query 111 QNAYAFDGDFS 121
+ AFD DF
Sbjct 122 DHVLAFDDDFD 132
>gi|257052627|ref|YP_003130460.1| PilT protein domain protein [Halorhabdus utahensis DSM 12940]
gi|256691390|gb|ACV11727.1| PilT protein domain protein [Halorhabdus utahensis DSM 12940]
Length=151
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/133 (31%), Positives = 65/133 (49%), Gaps = 11/133 (8%)
Query 2 IFVDTSFWAALGNAGDARHGTAKRLWAS--------KPPVVMTSNHVLGETWTLLNRRCG 53
+FVDT + A + RH A+ + + +P + T+N+VL E TL+ R+ G
Sbjct 9 LFVDTGAFFASFVSNAPRHDQARAVMDAIGDDRLHFRP--LYTTNYVLSELATLVLRKAG 66
Query 54 H-RAAVAAAAIRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQN 112
H RA+ + IR S V + H A R+D+++ SFVD + + R+ ++
Sbjct 67 HERASATLSWIRDSDAVTILHPDATTFGAVCAAFDRYDDQQISFVDHATATLAREHDVEY 126
Query 113 AYAFDGDFSAAGF 125
+AFD DF G
Sbjct 127 VFAFDTDFRTLGL 139
>gi|153876368|ref|ZP_02003726.1| conserved hypothetical protein [Beggiatoa sp. PS]
gi|152067168|gb|EDN66274.1| conserved hypothetical protein [Beggiatoa sp. PS]
Length=136
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/127 (31%), Positives = 57/127 (45%), Gaps = 5/127 (3%)
Query 2 IFVDTSFWAALGNAGDARHGTAKRL---WASKPPVVMTSNHVLGETWTLLNRRCGHRAAV 58
IF+DT F AL N D H A L + P ++ ++ VL E L +
Sbjct 5 IFIDTVFVLALVNRRDQYHQQALSLAKQFDGYP--LLVTDAVLLEIGNALAHNYKKESIK 62
Query 59 AAAAIRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAFDG 118
S + V +T L +QA+E +++++ + VD SF VM + GI A FD
Sbjct 63 IIEQFVKSEEIEVVRLTPQLFKQAFELYKKYEDKTWGLVDCISFVVMWEAGITQALTFDQ 122
Query 119 DFSAAGF 125
F AGF
Sbjct 123 HFVQAGF 129
>gi|166368891|ref|YP_001661164.1| hypothetical protein MAE_61500 [Microcystis aeruginosa NIES-843]
gi|166091264|dbj|BAG05972.1| hypothetical protein MAE_61500 [Microcystis aeruginosa NIES-843]
Length=137
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/131 (31%), Positives = 61/131 (47%), Gaps = 10/131 (7%)
Query 2 IFVDTSFWAALGNAGDARHGTAKRLWAS-KPPVVMTSNHVLGETWTLLNRRCGHRAAVAA 60
IF+DTS+ AL + GD + A + + +TS VL E LLN C +
Sbjct 4 IFLDTSYLQALADFGDNLNPLATAMTGRLRNFRGVTSEMVLTE---LLNALCSRGEYLRK 60
Query 61 AAIRLSTVVRVEHVTADLEE------QAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAY 114
+AIRL+ +R + T + + QA+++ R ++ YS D S +MR+ I
Sbjct 61 SAIRLTHRLRNDSKTIIIPQTSEQFHQAFDFYQRRLDKGYSLTDCASMQIMRQLEISEIL 120
Query 115 AFDGDFSAAGF 125
FD F GF
Sbjct 121 TFDKHFQQEGF 131
>gi|333980095|ref|YP_004518040.1| PilT protein domain-containing protein [Desulfotomaculum kuznetsovii
DSM 6115]
gi|333823576|gb|AEG16239.1| PilT protein domain protein [Desulfotomaculum kuznetsovii DSM
6115]
Length=138
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/127 (30%), Positives = 64/127 (51%), Gaps = 6/127 (4%)
Query 2 IFVDTSFWAALGNAGDARHGTA---KRLWASKPPVVMTSNHVLGETWTLLNRRCGHRAAV 58
+ VD+S AAL D RH A R + K ++ +N ++ ET+ LL R
Sbjct 3 VLVDSSAIAALILRNDQRHPEAVRALRYFTEKGAELVLTNFIVAETYNLLAARA---YPA 59
Query 59 AAAAIRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAFDG 118
A L+ VE V+ + E++A L ++ ++++S+ DATSFA+M + A+ +D
Sbjct 60 KAREWLLANTWPVERVSEEDEKEARRILEKYADKDFSYTDATSFALMTRLSFDLAFTYDR 119
Query 119 DFSAAGF 125
F+ G
Sbjct 120 HFTQYGL 126
>gi|308270841|emb|CBX27451.1| hypothetical protein N47_H22730 [uncultured Desulfobacterium
sp.]
Length=135
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/126 (32%), Positives = 62/126 (50%), Gaps = 3/126 (2%)
Query 2 IFVDTSFWAALGNAGDARHGTAKRLWASKPPVVMTSNHVLGETWTLLNRRCGHRAAVAAA 61
IF+DTS+ AL DARH A A+ +T++ VL E L + +RA A
Sbjct 4 IFLDTSYLLALIRKKDARHEDALSASANHAGPFITTDLVLVELANCLAKP-PYRATAVAV 62
Query 62 AIRLSTVVRVEHVTADLE--EQAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAFDGD 119
++ + + V+ D E E+A H ++ + VD SF VM+++ ++ A FD
Sbjct 63 IEKIRSDRNTKVVSFDSEDMEKALTLYKGHSDKAWGLVDCFSFVVMKEERLKVALCFDEH 122
Query 120 FSAAGF 125
F AGF
Sbjct 123 FRQAGF 128
>gi|14521371|ref|NP_126847.1| hypothetical protein PAB1599 [Pyrococcus abyssi GE5]
gi|5458589|emb|CAB50077.1| Predicted nucleic acid-binding protein, contains PIN domain [Pyrococcus
abyssi GE5]
Length=148
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/133 (28%), Positives = 62/133 (47%), Gaps = 5/133 (3%)
Query 1 MIFVDTSFWAALGNAGDARHGTAKRLWAS---KPPVVMTSNHVLGETWTLLNRRCGHRAA 57
++++DT A + D H A + S + VL E ++ G R A
Sbjct 9 LVYIDTGALIAFFDKRDKNHKIAVSYFESAILNGVRFVVGRPVLMEFINGASKVNGKRVA 68
Query 58 VAAAAIRLST-VVRVEHVTADLEEQAWEWLVRHDERE-YSFVDATSFAVMRKKGIQNAYA 115
+ + S+ + +E+ T E+AWE + D+++ VD SFA+M + GI+ A+
Sbjct 69 IQLKNLIYSSRYILIENETERDWEKAWEIFEKFDDQDGMDLVDCLSFAIMERLGIKKAFT 128
Query 116 FDGDFSAAGFVEV 128
FD DF GF+ V
Sbjct 129 FDSDFETYGFIVV 141
>gi|341582767|ref|YP_004763259.1| nucleic acid-binding protein [Thermococcus sp. 4557]
gi|340810425|gb|AEK73582.1| nucleic acid-binding protein [Thermococcus sp. 4557]
Length=142
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/135 (31%), Positives = 61/135 (46%), Gaps = 9/135 (6%)
Query 1 MIFVDTSFWAALGNAGDARHGTAKRLW---ASKPPVVMTSNHVLGETWTLLNRRCGHRAA 57
+ ++DTS AL D H A + S+ V + L E + + G
Sbjct 9 LFYMDTSAMIALLIRDDPEHERALSFFRDAVSEGSVFVIGRPTLMEFLNGVAKHVGK--D 66
Query 58 VAAAAIRLSTVVRVEHVTADLE---EQAWEWLVRH-DEREYSFVDATSFAVMRKKGIQNA 113
VA RL T R + E E+AWE ++ D+R D+ +FA+M + GI+ A
Sbjct 67 VAEEQYRLYTASRFIFTEKETEADWERAWELFFKYRDQRGIDLFDSLAFAIMERLGIRKA 126
Query 114 YAFDGDFSAAGFVEV 128
+ FD DF+ GFV V
Sbjct 127 FTFDSDFAVHGFVMV 141
>gi|218295420|ref|ZP_03496233.1| PilT protein domain protein [Thermus aquaticus Y51MC23]
gi|218244052|gb|EED10578.1| PilT protein domain protein [Thermus aquaticus Y51MC23]
Length=136
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/137 (35%), Positives = 62/137 (46%), Gaps = 10/137 (7%)
Query 1 MIFVDTSFWAALGNAGDARHGTAKRLWAS----KPPVVMTSNHVLG--ETWTLLNRRCGH 54
M+FVDTS AL DA H A +++A + P+ H G E+ L RR G
Sbjct 1 MVFVDTSALYALLERDDAHHREAAQVFAGLLRRRVPL---HTHAYGVVESLALAQRRLGM 57
Query 55 RAAVAAAAIRLSTVVRVEHVTADLEEQAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAY 114
AA A L VVRV V L A + R+ S V SF MR + ++ A+
Sbjct 58 EAARALVH-DLLGVVRVASVDEALHRAALTATLASGRRDVSLVGWASFLFMRHRKMEKAF 116
Query 115 AFDGDFSAAGFVEVRPE 131
A+D F GF V+ E
Sbjct 117 AYDVHFFGQGFKPVQAE 133
>gi|119491095|ref|ZP_01623253.1| hypothetical protein L8106_26297 [Lyngbya sp. PCC 8106]
gi|119453640|gb|EAW34800.1| hypothetical protein L8106_26297 [Lyngbya sp. PCC 8106]
Length=131
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/131 (27%), Positives = 58/131 (45%), Gaps = 1/131 (0%)
Query 1 MIFVDTSFWAALGNAGDARHGTAKRLWASKPPVVMTSNHVLGETWTLLNRRCGHRAAVAA 60
MIFVDTS W A D H ++T+++++ ET TLL R ++A
Sbjct 1 MIFVDTSAWFASVVPSDPDHQAVSIWMRQNTEALLTTDYIVDETLTLLRARKETARSLAM 60
Query 61 AAIRLSTVVRVEHVTADLEEQ-AWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAFDGD 119
S + + + + Q W+ + ++E+SF D +S ++ K I A + D
Sbjct 61 GQAFFSGQLGTLYFLTEADIQLTWQVFSQFSDKEWSFTDCSSKVIIEKLQISKALSLDNH 120
Query 120 FSAAGFVEVRP 130
F G + V P
Sbjct 121 FRQFGSITVIP 131
Lambda K H
0.322 0.131 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 131523520100
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40