BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2550c

Length=81
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609687|ref|NP_217066.1|  hypothetical protein Rv2550c [Mycob...   163    9e-39
gi|340627567|ref|YP_004746019.1|  hypothetical protein MCAN_25921...   162    1e-38
gi|308369749|ref|ZP_07418927.2|  antitoxin [Mycobacterium tubercu...   144    4e-33
gi|289762720|ref|ZP_06522098.1|  conserved hypothetical protein [...   137    5e-31
gi|333980727|ref|YP_004518672.1|  CopG-like domain-containing pro...  43.1    0.012
gi|297623628|ref|YP_003705062.1|  CopG domain-containing protein ...  40.0    0.10 
gi|147679034|ref|YP_001213249.1|  hypothetical protein PTH_2699 [...  38.1    0.47 


>gi|15609687|ref|NP_217066.1| hypothetical protein Rv2550c [Mycobacterium tuberculosis H37Rv]
 gi|15842087|ref|NP_337124.1| CopG family DNA-binding protein [Mycobacterium tuberculosis CDC1551]
 gi|31793733|ref|NP_856226.1| hypothetical protein Mb2580c [Mycobacterium bovis AF2122/97]
 71 more sequence titles
 Length=81

 Score =  163 bits (412),  Expect = 9e-39, Method: Compositional matrix adjust.
 Identities = 81/81 (100%), Positives = 81/81 (100%), Gaps = 0/81 (0%)

Query  1   MLVAYICHVKRLQIYIDEDVDRALAVEARRRRTSKAALIREYVAEHLRQPGPDPVDAFVG  60
           MLVAYICHVKRLQIYIDEDVDRALAVEARRRRTSKAALIREYVAEHLRQPGPDPVDAFVG
Sbjct  1   MLVAYICHVKRLQIYIDEDVDRALAVEARRRRTSKAALIREYVAEHLRQPGPDPVDAFVG  60

Query  61  SFVGEADLSASVDDVVYGKHE  81
           SFVGEADLSASVDDVVYGKHE
Sbjct  61  SFVGEADLSASVDDVVYGKHE  81


>gi|340627567|ref|YP_004746019.1| hypothetical protein MCAN_25921 [Mycobacterium canettii CIPT 
140010059]
 gi|340005757|emb|CCC44923.1| hypothetical protein MCAN_25921 [Mycobacterium canettii CIPT 
140010059]
Length=81

 Score =  162 bits (411),  Expect = 1e-38, Method: Compositional matrix adjust.
 Identities = 80/81 (99%), Positives = 81/81 (100%), Gaps = 0/81 (0%)

Query  1   MLVAYICHVKRLQIYIDEDVDRALAVEARRRRTSKAALIREYVAEHLRQPGPDPVDAFVG  60
           MLVAYICHVKRLQIYIDEDVDRALAVEARRRRTSKAALIREYVAEHLRQPGPDPVDAFVG
Sbjct  1   MLVAYICHVKRLQIYIDEDVDRALAVEARRRRTSKAALIREYVAEHLRQPGPDPVDAFVG  60

Query  61  SFVGEADLSASVDDVVYGKHE  81
           SFVGEADLSAS+DDVVYGKHE
Sbjct  61  SFVGEADLSASIDDVVYGKHE  81


>gi|308369749|ref|ZP_07418927.2| antitoxin [Mycobacterium tuberculosis SUMu002]
 gi|308372333|ref|ZP_07428274.2| antitoxin [Mycobacterium tuberculosis SUMu004]
 gi|308326524|gb|EFP15375.1| antitoxin [Mycobacterium tuberculosis SUMu002]
 gi|308333561|gb|EFP22412.1| antitoxin [Mycobacterium tuberculosis SUMu004]
Length=73

 Score =  144 bits (363),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 72/73 (99%), Positives = 73/73 (100%), Gaps = 0/73 (0%)

Query  9   VKRLQIYIDEDVDRALAVEARRRRTSKAALIREYVAEHLRQPGPDPVDAFVGSFVGEADL  68
           +KRLQIYIDEDVDRALAVEARRRRTSKAALIREYVAEHLRQPGPDPVDAFVGSFVGEADL
Sbjct  1   MKRLQIYIDEDVDRALAVEARRRRTSKAALIREYVAEHLRQPGPDPVDAFVGSFVGEADL  60

Query  69  SASVDDVVYGKHE  81
           SASVDDVVYGKHE
Sbjct  61  SASVDDVVYGKHE  73


>gi|289762720|ref|ZP_06522098.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|289710226|gb|EFD74242.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
Length=79

 Score =  137 bits (345),  Expect = 5e-31, Method: Compositional matrix adjust.
 Identities = 68/71 (96%), Positives = 68/71 (96%), Gaps = 0/71 (0%)

Query  1   MLVAYICHVKRLQIYIDEDVDRALAVEARRRRTSKAALIREYVAEHLRQPGPDPVDAFVG  60
           MLVAYICHVKRLQIYIDEDVDRALAVEARRRRTSKAALIREYVAEHLRQPGPDPVDAFVG
Sbjct  1   MLVAYICHVKRLQIYIDEDVDRALAVEARRRRTSKAALIREYVAEHLRQPGPDPVDAFVG  60

Query  61  SFVGEADLSAS  71
           SFVGEAD   S
Sbjct  61  SFVGEADCPRS  71


>gi|333980727|ref|YP_004518672.1| CopG-like domain-containing protein DNA-binding protein [Desulfotomaculum 
kuznetsovii DSM 6115]
 gi|333824208|gb|AEG16871.1| CopG-like domain-containing protein DNA-binding protein [Desulfotomaculum 
kuznetsovii DSM 6115]
Length=84

 Score = 43.1 bits (100),  Expect = 0.012, Method: Compositional matrix adjust.
 Identities = 25/52 (49%), Positives = 33/52 (64%), Gaps = 2/52 (3%)

Query  9   VKRLQIYIDEDVDRALAVEARRRRTSKAALIREYVAEHLRQPGPD--PVDAF  58
           ++R QIY+  D  RAL  EARR+  S A LIR+ V+EHL + G    P +AF
Sbjct  1   MQRTQIYLHPDQHRALLNEARRKGISLAELIRQIVSEHLERQGERKAPKEAF  52


>gi|297623628|ref|YP_003705062.1| CopG domain-containing protein DNA-binding domain-containing 
protein [Truepera radiovictrix DSM 17093]
 gi|297164808|gb|ADI14519.1| CopG domain protein DNA-binding domain protein [Truepera radiovictrix 
DSM 17093]
Length=96

 Score = 40.0 bits (92),  Expect = 0.10, Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 43/75 (58%), Gaps = 2/75 (2%)

Query  9   VKRLQIYIDEDVDRALAVEARRRRTSKAALIREYVAEHL-RQPGPDPVDAFVG-SFVGEA  66
           +KR  +Y+DE  D  LA  AR++   KA L+RE ++ ++ RQ  P P+   VG    G  
Sbjct  1   MKRTTVYVDEKTDLELAHLARQQGRPKAELVREALSRYVERQRTPRPLPRSVGMGRSGLP  60

Query  67  DLSASVDDVVYGKHE  81
           DL+   D+++ G +E
Sbjct  61  DLAERTDELLGGLYE  75


>gi|147679034|ref|YP_001213249.1| hypothetical protein PTH_2699 [Pelotomaculum thermopropionicum 
SI]
 gi|146275131|dbj|BAF60880.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
Length=83

 Score = 38.1 bits (87),  Expect = 0.47, Method: Compositional matrix adjust.
 Identities = 24/66 (37%), Positives = 40/66 (61%), Gaps = 5/66 (7%)

Query  12  LQIYIDEDVDRALAVEARRRRTSKAALIREYVAEHLRQPGP---DPVDAFVGSFVGE-AD  67
           LQ+Y+D+ + + L + A+R++ ++A LIR+Y+ + L Q  P   DP    +G   G+ AD
Sbjct  6   LQVYVDQALHQQLRLMAKRKKVTQAELIRKYLYQGL-QKEPDLHDPALDIIGLGTGKTAD  64

Query  68  LSASVD  73
           LS   D
Sbjct  65  LSERHD  70



Lambda     K      H
   0.322    0.138    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128409240708


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40