BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2554c
Length=170
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609691|ref|NP_217070.1| Holliday junction resolvase-like pr... 320 4e-86
gi|339295431|gb|AEJ47542.1| Holliday junction resolvase-like pro... 263 6e-69
gi|41407176|ref|NP_960012.1| Holliday junction resolvase-like pr... 256 1e-66
gi|296170782|ref|ZP_06852354.1| YqgF family crossover junction e... 255 2e-66
gi|118466058|ref|YP_882612.1| Holliday junction resolvase-like p... 254 3e-66
gi|342858626|ref|ZP_08715281.1| Holliday junction resolvase-like... 238 2e-61
gi|118617375|ref|YP_905707.1| Holliday junction resolvase-like p... 237 6e-61
gi|308369751|ref|ZP_07666800.1| hypothetical protein TMBG_01094 ... 225 2e-57
gi|108799314|ref|YP_639511.1| Holliday junction resolvase-like p... 223 5e-57
gi|126434972|ref|YP_001070663.1| Holliday junction resolvase-lik... 223 9e-57
gi|118470819|ref|YP_887343.1| Holliday junction resolvase-like p... 218 2e-55
gi|120403626|ref|YP_953455.1| Holliday junction resolvase YqgF [... 217 4e-55
gi|145224344|ref|YP_001135022.1| Holliday junction resolvase Yqg... 215 1e-54
gi|240170725|ref|ZP_04749384.1| Holliday junction resolvase-like... 212 1e-53
gi|254821811|ref|ZP_05226812.1| Holliday junction resolvase-like... 194 3e-48
gi|15827175|ref|NP_301438.1| Holliday junction resolvase-like pr... 187 7e-46
gi|340796754|gb|AEK70604.1| putative Holliday junction resolvase... 177 4e-43
gi|111024086|ref|YP_707058.1| Holliday junction resolvase-like p... 174 3e-42
gi|226366326|ref|YP_002784109.1| Holliday junction resolvase-lik... 172 1e-41
gi|333919510|ref|YP_004493091.1| putative Holliday junction reso... 172 2e-41
gi|226306473|ref|YP_002766433.1| Holliday junction resolvase [Rh... 171 5e-41
gi|169629934|ref|YP_001703583.1| putative Holliday junction reso... 162 1e-38
gi|54025613|ref|YP_119855.1| Holliday junction resolvase-like pr... 161 3e-38
gi|340796756|gb|AEK70605.1| putative Holliday junction resolvase... 159 9e-38
gi|302525837|ref|ZP_07278179.1| Holliday junction resolvase YqgF... 157 5e-37
gi|340796758|gb|AEK70606.1| putative Holliday junction resolvase... 155 1e-36
gi|300781085|ref|ZP_07090939.1| Holliday junction resolvase fami... 154 4e-36
gi|296139684|ref|YP_003646927.1| Holliday junction resolvase Yqg... 154 4e-36
gi|256379271|ref|YP_003102931.1| Holliday junction resolvase Yqg... 153 8e-36
gi|257055558|ref|YP_003133390.1| hypothetical protein Svir_15280... 147 7e-34
gi|213966117|ref|ZP_03394304.1| conserved hypothetical protein [... 146 1e-33
gi|271967371|ref|YP_003341567.1| endonuclease involved in recomb... 145 3e-33
gi|237785597|ref|YP_002906302.1| Holliday junction resolvase-lik... 142 1e-32
gi|334696984|gb|AEG81781.1| hypothetical protein CULC809_01249 [... 141 3e-32
gi|345010674|ref|YP_004813028.1| Holliday junction resolvase [St... 141 4e-32
gi|337290870|ref|YP_004629891.1| hypothetical protein CULC22_012... 140 5e-32
gi|255325070|ref|ZP_05366176.1| conserved hypothetical protein [... 140 6e-32
gi|289758683|ref|ZP_06518061.1| conserved hypothetical protein [... 140 7e-32
gi|225021331|ref|ZP_03710523.1| hypothetical protein CORMATOL_01... 140 7e-32
gi|305681376|ref|ZP_07404183.1| RNAse H domain protein, YqgF fam... 140 8e-32
gi|333990980|ref|YP_004523594.1| Holliday junction resolvase-lik... 140 8e-32
gi|297155786|gb|ADI05498.1| Holliday junction resolvase-like pro... 139 1e-31
gi|291450310|ref|ZP_06589700.1| conserved hypothetical protein [... 139 1e-31
gi|291009599|ref|ZP_06567572.1| Holliday junction resolvase YqgF... 139 2e-31
gi|343924307|ref|ZP_08763858.1| putative Holliday junction resol... 139 2e-31
gi|311739531|ref|ZP_07713366.1| Holliday junction resolvase fami... 138 2e-31
gi|300858566|ref|YP_003783549.1| hypothetical protein cpfrc_0114... 138 4e-31
gi|306836212|ref|ZP_07469196.1| YqgF family crossover junction e... 137 4e-31
gi|320011911|gb|ADW06761.1| Holliday junction resolvase YqgF [St... 137 4e-31
gi|227549180|ref|ZP_03979229.1| Holliday junction resolvase fami... 137 5e-31
>gi|15609691|ref|NP_217070.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis
H37Rv]
gi|15842092|ref|NP_337129.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis
CDC1551]
gi|31793737|ref|NP_856230.1| Holliday junction resolvase-like protein [Mycobacterium bovis
AF2122/97]
67 more sequence titles
Length=170
Score = 320 bits (821), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 169/170 (99%), Positives = 170/170 (100%), Gaps = 0/170 (0%)
Query 1 VVPAQHRPPDRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRDRSGKH 60
+VPAQHRPPDRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRDRSGKH
Sbjct 1 MVPAQHRPPDRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRDRSGKH 60
Query 61 LRRLAALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTT 120
LRRLAALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTT
Sbjct 61 LRRLAALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTT 120
Query 121 VSAQRSLRQAGVRASEQRAVIDQAAAVAILQSWLDERLAAMAGTQEGSDA 170
VSAQRSLRQAGVRASEQRAVIDQAAAVAILQSWLDERLAAMAGTQEGSDA
Sbjct 121 VSAQRSLRQAGVRASEQRAVIDQAAAVAILQSWLDERLAAMAGTQEGSDA 170
>gi|339295431|gb|AEJ47542.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis
CCDC5079]
gi|339299051|gb|AEJ51161.1| Holliday junction resolvase-like protein [Mycobacterium tuberculosis
CCDC5180]
Length=142
Score = 263 bits (672), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 141/142 (99%), Positives = 142/142 (100%), Gaps = 0/142 (0%)
Query 29 VGAARIGVACSDPDAILATPVETVRRDRSGKHLRRLAALAAELEAVEVIVGLPRTLADRI 88
+GAARIGVACSDPDAILATPVETVRRDRSGKHLRRLAALAAELEAVEVIVGLPRTLADRI
Sbjct 1 MGAARIGVACSDPDAILATPVETVRRDRSGKHLRRLAALAAELEAVEVIVGLPRTLADRI 60
Query 89 GRSAQDAIELAEALARRVSPTPVRLADERLTTVSAQRSLRQAGVRASEQRAVIDQAAAVA 148
GRSAQDAIELAEALARRVSPTPVRLADERLTTVSAQRSLRQAGVRASEQRAVIDQAAAVA
Sbjct 61 GRSAQDAIELAEALARRVSPTPVRLADERLTTVSAQRSLRQAGVRASEQRAVIDQAAAVA 120
Query 149 ILQSWLDERLAAMAGTQEGSDA 170
ILQSWLDERLAAMAGTQEGSDA
Sbjct 121 ILQSWLDERLAAMAGTQEGSDA 142
>gi|41407176|ref|NP_960012.1| Holliday junction resolvase-like protein [Mycobacterium avium
subsp. paratuberculosis K-10]
gi|254775876|ref|ZP_05217392.1| Holliday junction resolvase-like protein [Mycobacterium avium
subsp. avium ATCC 25291]
gi|62900995|sp|Q741L2.1|RUVX_MYCPA RecName: Full=Putative Holliday junction resolvase
gi|41395527|gb|AAS03395.1| hypothetical protein MAP_1078 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336461494|gb|EGO40362.1| RNAse H protein YqgF [Mycobacterium avium subsp. paratuberculosis
S397]
Length=167
Score = 256 bits (653), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 137/169 (82%), Positives = 148/169 (88%), Gaps = 3/169 (1%)
Query 1 VVPAQHRPPDRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRDRSGKH 60
+V QHR PDRPGDP DPGRGRRLGIDVG+ RIGVACSDPDA+LATPVETVRRDRSGKH
Sbjct 1 MVLTQHRVPDRPGDPDQDPGRGRRLGIDVGSVRIGVACSDPDAVLATPVETVRRDRSGKH 60
Query 61 LRRLAALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTT 120
LRRLAAL EL AVEV+VGLPRTLADR G SA DAI+LA+ LARR++PTPVRLADERLTT
Sbjct 61 LRRLAALVTELGAVEVVVGLPRTLADRTGTSALDAIDLADQLARRIAPTPVRLADERLTT 120
Query 121 VSAQRSLRQAGVRASEQRAVIDQAAAVAILQSWLDERLAAMAGTQEGSD 169
V+AQRSLR AGVRA EQRAVIDQAAAVAILQSWLD+R AA T+E D
Sbjct 121 VAAQRSLRAAGVRAKEQRAVIDQAAAVAILQSWLDQRRAA---TREAGD 166
>gi|296170782|ref|ZP_06852354.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295894597|gb|EFG74334.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length=169
Score = 255 bits (651), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 133/161 (83%), Positives = 145/161 (91%), Gaps = 0/161 (0%)
Query 1 VVPAQHRPPDRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRDRSGKH 60
+VP QHR PDRPGDP DPGRGRRLG+DVG+ RIGVACSDPD ILATPVETVRRDRSGKH
Sbjct 1 MVPTQHRLPDRPGDPDQDPGRGRRLGVDVGSVRIGVACSDPDGILATPVETVRRDRSGKH 60
Query 61 LRRLAALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTT 120
+RRLA LAAEL AVEV+VGLPRTLADR G SA DA+ELA+ LA+R++PTPVRLADERLTT
Sbjct 61 VRRLAELAAELGAVEVVVGLPRTLADRTGPSALDAMELADTLAQRLAPTPVRLADERLTT 120
Query 121 VSAQRSLRQAGVRASEQRAVIDQAAAVAILQSWLDERLAAM 161
VSAQRSLR AGVRA EQRAVIDQAAAVAILQSWLD+R A +
Sbjct 121 VSAQRSLRAAGVRAKEQRAVIDQAAAVAILQSWLDQRRATL 161
>gi|118466058|ref|YP_882612.1| Holliday junction resolvase-like protein [Mycobacterium avium
104]
gi|118167345|gb|ABK68242.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=165
Score = 254 bits (649), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 134/163 (83%), Positives = 145/163 (89%), Gaps = 0/163 (0%)
Query 5 QHRPPDRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRDRSGKHLRRL 64
QHR PDRPGDP DPGRGRRLGIDVG+ RIGVACSDPDA+LATPVETVRRDRSGKHLRRL
Sbjct 3 QHRVPDRPGDPDQDPGRGRRLGIDVGSVRIGVACSDPDAVLATPVETVRRDRSGKHLRRL 62
Query 65 AALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTTVSAQ 124
AAL EL AVEV+VGLPRTLADR G SA DAI+LA+ LARR++PTPVRLADERLTTV+AQ
Sbjct 63 AALVTELGAVEVVVGLPRTLADRTGASALDAIDLADQLARRIAPTPVRLADERLTTVAAQ 122
Query 125 RSLRQAGVRASEQRAVIDQAAAVAILQSWLDERLAAMAGTQEG 167
RSLR AGVRA EQRAVIDQAAAVAILQSWLD+R AA+ +G
Sbjct 123 RSLRAAGVRAKEQRAVIDQAAAVAILQSWLDQRRAAVREAGDG 165
>gi|342858626|ref|ZP_08715281.1| Holliday junction resolvase-like protein [Mycobacterium colombiense
CECT 3035]
gi|342134330|gb|EGT87510.1| Holliday junction resolvase-like protein [Mycobacterium colombiense
CECT 3035]
Length=172
Score = 238 bits (607), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 139/163 (86%), Positives = 144/163 (89%), Gaps = 4/163 (2%)
Query 5 QHRPPDRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRDRSGKHLRRL 64
QHR PDRPGDP DPGRGRRLGIDVG+ RIGVACSDPDAILATPVETVRRDR GKHLRRL
Sbjct 5 QHRSPDRPGDPHQDPGRGRRLGIDVGSVRIGVACSDPDAILATPVETVRRDRGGKHLRRL 64
Query 65 AALAAELEAVEVIVGLPRTLADRIGRSAQDAIE----LAEALARRVSPTPVRLADERLTT 120
AALAAE EAVEV+VGLPRTLADR G SA DAIE LAE LARRV P PVRLADERLTT
Sbjct 65 AALAAEYEAVEVVVGLPRTLADRTGPSAIDAIEVADALAEVLARRVPPVPVRLADERLTT 124
Query 121 VSAQRSLRQAGVRASEQRAVIDQAAAVAILQSWLDERLAAMAG 163
V+AQRSLR AGVRA EQRAVIDQAAAVAILQSWLD+R AA+AG
Sbjct 125 VAAQRSLRAAGVRAKEQRAVIDQAAAVAILQSWLDQRRAAVAG 167
>gi|118617375|ref|YP_905707.1| Holliday junction resolvase-like protein [Mycobacterium ulcerans
Agy99]
gi|183982184|ref|YP_001850475.1| hypothetical protein MMAR_2171 [Mycobacterium marinum M]
gi|167012739|sp|A0PPG7.1|RUVX_MYCUA RecName: Full=Putative Holliday junction resolvase
gi|226731630|sp|B2HNC2.1|RUVX_MYCMM RecName: Full=Putative Holliday junction resolvase
gi|118569485|gb|ABL04236.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
gi|183175510|gb|ACC40620.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=170
Score = 237 bits (604), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 130/170 (77%), Positives = 141/170 (83%), Gaps = 3/170 (1%)
Query 1 VVPAQHRPPDRPGDP-AHDPG--RGRRLGIDVGAARIGVACSDPDAILATPVETVRRDRS 57
+V A HR PDRPGDP +PG RGRRLGIDVG RIGVA SDPD ILATP+ETVRR+RS
Sbjct 1 MVAASHRSPDRPGDPEGLEPGTGRGRRLGIDVGTVRIGVASSDPDGILATPLETVRRERS 60
Query 58 GKHLRRLAALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADER 117
GKHLRRLA L E EAVEVIVGLPRTLADRIG SAQDAI+LA+ LA RV+P PVRLADER
Sbjct 61 GKHLRRLATLVGETEAVEVIVGLPRTLADRIGSSAQDAIDLADELAARVAPIPVRLADER 120
Query 118 LTTVSAQRSLRQAGVRASEQRAVIDQAAAVAILQSWLDERLAAMAGTQEG 167
LTTVSAQRSLR+AGVRA QRAVIDQAAAVAILQ+WLD+R G +G
Sbjct 121 LTTVSAQRSLREAGVRAKNQRAVIDQAAAVAILQAWLDQRRTLAGGRADG 170
>gi|308369751|ref|ZP_07666800.1| hypothetical protein TMBG_01094 [Mycobacterium tuberculosis SUMu002]
gi|308372334|ref|ZP_07428278.2| hypothetical protein TMDG_00268 [Mycobacterium tuberculosis SUMu004]
gi|308374613|ref|ZP_07667825.1| hypothetical protein TMFG_03782 [Mycobacterium tuberculosis SUMu006]
13 more sequence titles
Length=122
Score = 225 bits (573), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 121/122 (99%), Positives = 122/122 (100%), Gaps = 0/122 (0%)
Query 49 VETVRRDRSGKHLRRLAALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVSP 108
+ETVRRDRSGKHLRRLAALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVSP
Sbjct 1 METVRRDRSGKHLRRLAALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVSP 60
Query 109 TPVRLADERLTTVSAQRSLRQAGVRASEQRAVIDQAAAVAILQSWLDERLAAMAGTQEGS 168
TPVRLADERLTTVSAQRSLRQAGVRASEQRAVIDQAAAVAILQSWLDERLAAMAGTQEGS
Sbjct 61 TPVRLADERLTTVSAQRSLRQAGVRASEQRAVIDQAAAVAILQSWLDERLAAMAGTQEGS 120
Query 169 DA 170
DA
Sbjct 121 DA 122
>gi|108799314|ref|YP_639511.1| Holliday junction resolvase-like protein [Mycobacterium sp. MCS]
gi|119868430|ref|YP_938382.1| Holliday junction resolvase-like protein [Mycobacterium sp. KMS]
gi|122977019|sp|Q1B9H9.1|RUVX_MYCSS RecName: Full=Putative Holliday junction resolvase
gi|167012737|sp|A1UFI4.1|RUVX_MYCSK RecName: Full=Putative Holliday junction resolvase
gi|108769733|gb|ABG08455.1| Holliday junction resolvase YqgF [Mycobacterium sp. MCS]
gi|119694519|gb|ABL91592.1| Holliday junction resolvase YqgF [Mycobacterium sp. KMS]
Length=169
Score = 223 bits (569), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 119/165 (73%), Positives = 140/165 (85%), Gaps = 3/165 (1%)
Query 4 AQHRPPDRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRDRSG-KHLR 62
+ HR PDRPG+ DPGRGRR+GIDVG+ R+GVA SDPD +LATPVETVRR++S +H+R
Sbjct 4 SDHRLPDRPGE--GDPGRGRRIGIDVGSVRVGVATSDPDGVLATPVETVRREKSSDRHVR 61
Query 63 RLAALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTTVS 122
RLA L ELEAVEV+VGLPRTLADR G +A DAI++AEALARR++P PVR+ADERLTTVS
Sbjct 62 RLAQLVTELEAVEVVVGLPRTLADRTGPAAHDAIDVAEALARRIAPVPVRMADERLTTVS 121
Query 123 AQRSLRQAGVRASEQRAVIDQAAAVAILQSWLDERLAAMAGTQEG 167
AQRSLR+AGVRA QRA+IDQ AAV ILQSWLD+R AA+A EG
Sbjct 122 AQRSLREAGVRAKGQRAMIDQVAAVGILQSWLDQRRAALAAPGEG 166
>gi|126434972|ref|YP_001070663.1| Holliday junction resolvase-like protein [Mycobacterium sp. JLS]
gi|167012736|sp|A3PZ45.1|RUVX_MYCSJ RecName: Full=Putative Holliday junction resolvase
gi|126234772|gb|ABN98172.1| Holliday junction resolvase YqgF [Mycobacterium sp. JLS]
Length=169
Score = 223 bits (567), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 119/166 (72%), Positives = 139/166 (84%), Gaps = 3/166 (1%)
Query 4 AQHRPPDRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRDRSG-KHLR 62
+ HR PDRPG+ DPGRGRR+GIDVG R+GVA SDPD +LATPVETVRR++S +H+R
Sbjct 4 SDHRLPDRPGE--GDPGRGRRIGIDVGCVRVGVATSDPDGVLATPVETVRREKSSDRHVR 61
Query 63 RLAALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTTVS 122
RLA L ELEAVEV+VGLPRTLADR G +A DAI++AEALARR++P PVR+ADERLTTVS
Sbjct 62 RLAQLVTELEAVEVVVGLPRTLADRTGPAAHDAIDVAEALARRIAPVPVRMADERLTTVS 121
Query 123 AQRSLRQAGVRASEQRAVIDQAAAVAILQSWLDERLAAMAGTQEGS 168
AQRSLR+AGVRA QRA+IDQ AAV ILQSWLD+R AA+A EG
Sbjct 122 AQRSLREAGVRAKGQRAMIDQVAAVGILQSWLDQRRAALAAPGEGG 167
>gi|118470819|ref|YP_887343.1| Holliday junction resolvase-like protein [Mycobacterium smegmatis
str. MC2 155]
gi|226731631|sp|A0QWQ5.1|RUVX_MYCS2 RecName: Full=Putative Holliday junction resolvase
gi|118172106|gb|ABK73002.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=170
Score = 218 bits (555), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 122/167 (74%), Positives = 138/167 (83%), Gaps = 5/167 (2%)
Query 7 RPPDRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETV---RRDRSGKHLRR 63
R PDRPG A DPGRGRR+GIDVG RIGVA SDPD ILATPVETV +RD++GKH+RR
Sbjct 6 RLPDRPG--ADDPGRGRRIGIDVGTVRIGVASSDPDGILATPVETVARDKRDKTGKHVRR 63
Query 64 LAALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTTVSA 123
LAAL E EAVEVIVGLPRTL DR SA DA+++AE LARR++PTPVRLADERLTTVSA
Sbjct 64 LAALVKEYEAVEVIVGLPRTLGDRASASAHDAVDVAEQLARRIAPTPVRLADERLTTVSA 123
Query 124 QRSLRQAGVRASEQRAVIDQAAAVAILQSWLDERLAAMAGTQEGSDA 170
QRSLR+AGVRA Q+AVIDQ AAV ILQ WLD+R AA+A +EG+D
Sbjct 124 QRSLREAGVRARGQKAVIDQVAAVGILQGWLDQRRAALAARREGTDG 170
>gi|120403626|ref|YP_953455.1| Holliday junction resolvase YqgF [Mycobacterium vanbaalenii PYR-1]
gi|119956444|gb|ABM13449.1| Holliday junction resolvase YqgF [Mycobacterium vanbaalenii PYR-1]
Length=175
Score = 217 bits (553), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 118/158 (75%), Positives = 133/158 (85%), Gaps = 3/158 (1%)
Query 7 RPPDRPGDP--AHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRDRSG-KHLRR 63
R PDRPGDP A DPGRGRRLG+DVG RIGVA SDPDAILATPVETV RD+ G KH+RR
Sbjct 9 RVPDRPGDPNTAPDPGRGRRLGVDVGTVRIGVAVSDPDAILATPVETVPRDKRGTKHVRR 68
Query 64 LAALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTTVSA 123
LAAL E + VEV+VGLPRTLADR G SAQDA E+AE LA R++P PVRLADER TTV+A
Sbjct 69 LAALVDEYQVVEVVVGLPRTLADRAGSSAQDATEVAEVLAGRIAPVPVRLADERFTTVTA 128
Query 124 QRSLRQAGVRASEQRAVIDQAAAVAILQSWLDERLAAM 161
QR+LR+AGVRA QR+VIDQAAAV ILQ+WLD+R AA+
Sbjct 129 QRALREAGVRARGQRSVIDQAAAVGILQNWLDQRRAAL 166
>gi|145224344|ref|YP_001135022.1| Holliday junction resolvase YqgF [Mycobacterium gilvum PYR-GCK]
gi|315444676|ref|YP_004077555.1| hypothetical protein Mspyr1_31030 [Mycobacterium sp. Spyr1]
gi|145216830|gb|ABP46234.1| Holliday junction resolvase YqgF [Mycobacterium gilvum PYR-GCK]
gi|315262979|gb|ADT99720.1| conserved hypothetical protein TIGR00250 [Mycobacterium sp. Spyr1]
Length=175
Score = 215 bits (548), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 114/158 (73%), Positives = 132/158 (84%), Gaps = 3/158 (1%)
Query 7 RPPDRPGDP--AHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRDR-SGKHLRR 63
R PDRPGDP A DPGRGRRLGIDVG+ RIGVA SDPDA+LATPVETV RDR SG+HLRR
Sbjct 9 RVPDRPGDPNAAPDPGRGRRLGIDVGSVRIGVAVSDPDAVLATPVETVTRDRRSGRHLRR 68
Query 64 LAALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTTVSA 123
L L E EAVEV++GLPRTL +R G SAQDA E+A+ LA R++P PVRLADER TTV+A
Sbjct 69 LTTLVGEYEAVEVVIGLPRTLGNRAGSSAQDATEVADQLAARIAPVPVRLADERFTTVTA 128
Query 124 QRSLRQAGVRASEQRAVIDQAAAVAILQSWLDERLAAM 161
QR LR+AGVRA Q+++IDQAAAV ILQ+WLD+R AA+
Sbjct 129 QRELREAGVRARGQKSMIDQAAAVGILQNWLDQRRAAL 166
>gi|240170725|ref|ZP_04749384.1| Holliday junction resolvase-like protein [Mycobacterium kansasii
ATCC 12478]
Length=141
Score = 212 bits (540), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 111/136 (82%), Positives = 123/136 (91%), Gaps = 0/136 (0%)
Query 33 RIGVACSDPDAILATPVETVRRDRSGKHLRRLAALAAELEAVEVIVGLPRTLADRIGRSA 92
RIGVACSDPD ILATPVETVRRDRSGKHLRRL ALAAEL+AVEV+VGLPRTLADRIG +A
Sbjct 2 RIGVACSDPDGILATPVETVRRDRSGKHLRRLVALAAELQAVEVVVGLPRTLADRIGPAA 61
Query 93 QDAIELAEALARRVSPTPVRLADERLTTVSAQRSLRQAGVRASEQRAVIDQAAAVAILQS 152
QDAI+LA+ALA+R+ PTPVRL DERLTTVSAQRSLRQAG+RA EQRAVIDQAAAVAILQ+
Sbjct 62 QDAIDLADALAQRIGPTPVRLVDERLTTVSAQRSLRQAGIRAKEQRAVIDQAAAVAILQT 121
Query 153 WLDERLAAMAGTQEGS 168
WLD+R + G G+
Sbjct 122 WLDQRRSTAPGPVTGN 137
>gi|254821811|ref|ZP_05226812.1| Holliday junction resolvase-like protein [Mycobacterium intracellulare
ATCC 13950]
Length=250
Score = 194 bits (494), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 119/136 (88%), Positives = 125/136 (92%), Gaps = 0/136 (0%)
Query 1 VVPAQHRPPDRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRDRSGKH 60
+V AQHR PDRPGDP DPGRGRRLG+DVG+ RIGVACSDPDAILATPVETVRRDRSGKH
Sbjct 1 MVSAQHRAPDRPGDPDQDPGRGRRLGVDVGSVRIGVACSDPDAILATPVETVRRDRSGKH 60
Query 61 LRRLAALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTT 120
LRRLAALAAELEAVEV+VGLPRTLADR G SA DAIELA+ALA RV+PTPVRLADERLTT
Sbjct 61 LRRLAALAAELEAVEVVVGLPRTLADRTGPSAIDAIELADALADRVAPTPVRLADERLTT 120
Query 121 VSAQRSLRQAGVRASE 136
VSAQRSLR AGVRA E
Sbjct 121 VSAQRSLRAAGVRAKE 136
>gi|15827175|ref|NP_301438.1| Holliday junction resolvase-like protein [Mycobacterium leprae
TN]
gi|221229653|ref|YP_002503069.1| Holliday junction resolvase-like protein [Mycobacterium leprae
Br4923]
gi|32130062|sp|Q9CCS9.1|RUVX_MYCLE RecName: Full=Putative Holliday junction resolvase
gi|254767521|sp|B8ZUJ7.1|RUVX_MYCLB RecName: Full=Putative Holliday junction resolvase
gi|13092723|emb|CAC30021.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219932760|emb|CAR70606.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=184
Score = 187 bits (474), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 116/164 (71%), Positives = 128/164 (79%), Gaps = 4/164 (2%)
Query 1 VVPAQHRPPDRPGDP----AHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRDR 56
+ +QHR +P P DP RGRRLGIDVG+ RIGVA SDPD ILATPVETVRR R
Sbjct 1 MFSSQHRLLYQPSGPDLSKNLDPERGRRLGIDVGSVRIGVAFSDPDGILATPVETVRRYR 60
Query 57 SGKHLRRLAALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADE 116
S KHLRRLA L EL+ VEV+VGLP TL DR G SA+DAI+ AEALARRV+P PVRL DE
Sbjct 61 SAKHLRRLAELVVELQVVEVVVGLPWTLTDRTGSSAKDAIDTAEALARRVAPVPVRLVDE 120
Query 117 RLTTVSAQRSLRQAGVRASEQRAVIDQAAAVAILQSWLDERLAA 160
RLTTVSAQR LR AGVRA +QRAVIDQAAAV ILQ+WLD+ AA
Sbjct 121 RLTTVSAQRLLRAAGVRAKDQRAVIDQAAAVVILQNWLDQCRAA 164
>gi|340796754|gb|AEK70604.1| putative Holliday junction resolvase [Mycobacterium bolletii]
Length=166
Score = 177 bits (450), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 92/150 (62%), Positives = 111/150 (74%), Gaps = 3/150 (2%)
Query 9 PDRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRD-RSGKHLRRLAAL 67
PDRPG DPGRGRRLG+DVG RIG++ SDPD ILATPVETV RD + RR+A L
Sbjct 9 PDRPG--PDDPGRGRRLGVDVGTVRIGISSSDPDGILATPVETVSRDAKEDSDFRRIAEL 66
Query 68 AAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTTVSAQRSL 127
++ VEV+VGLPR L + G SA+DA A L R++P PVRL DER TT +AQRSL
Sbjct 67 VEQMSVVEVVVGLPRNLREGTGSSARDAAGFARELGERIAPVPVRLVDERFTTTTAQRSL 126
Query 128 RQAGVRASEQRAVIDQAAAVAILQSWLDER 157
R+AGVR+ +QR +IDQAAAVAILQ WL++R
Sbjct 127 REAGVRSRQQRGIIDQAAAVAILQDWLEQR 156
>gi|111024086|ref|YP_707058.1| Holliday junction resolvase-like protein [Rhodococcus jostii
RHA1]
gi|118597220|sp|Q0S0N6.1|RUVX_RHOSR RecName: Full=Putative Holliday junction resolvase
gi|110823616|gb|ABG98900.1| probable Holliday junction resolvase [Rhodococcus jostii RHA1]
Length=178
Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 100/166 (61%), Positives = 118/166 (72%), Gaps = 6/166 (3%)
Query 9 PDRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRDRS----GKHLRRL 64
PDRPG DPGRGRR+GIDVG+ RIGVA SDPD ILATPVETV R + +RR+
Sbjct 8 PDRPG--VDDPGRGRRIGIDVGSVRIGVASSDPDGILATPVETVPRSKERGPDAPDIRRI 65
Query 65 AALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTTVSAQ 124
A + E EAVEVIVGLP+TL G++A A A+ L R+V P PVR+ADERLTTV+A
Sbjct 66 ADIVEEYEAVEVIVGLPQTLRGERGKAASIATVFAKRLRRKVDPIPVRMADERLTTVTAA 125
Query 125 RSLRQAGVRASEQRAVIDQAAAVAILQSWLDERLAAMAGTQEGSDA 170
R+LR++GV A QR VIDQAAAVAILQ WLDER ++ G DA
Sbjct 126 RALRESGVSARGQRPVIDQAAAVAILQGWLDERSRSVNAGDSGGDA 171
>gi|226366326|ref|YP_002784109.1| Holliday junction resolvase-like protein [Rhodococcus opacus
B4]
gi|254767522|sp|C1B4H5.1|RUVX_RHOOB RecName: Full=Putative Holliday junction resolvase
gi|226244816|dbj|BAH55164.1| putative Holliday junction resolvase [Rhodococcus opacus B4]
Length=178
Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 99/165 (60%), Positives = 117/165 (71%), Gaps = 6/165 (3%)
Query 9 PDRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRDRS----GKHLRRL 64
PDRPG DPGRGRR+GIDVG+ RIGVA SDPD ILATPVETV R + +RR+
Sbjct 8 PDRPG--VDDPGRGRRIGIDVGSVRIGVASSDPDGILATPVETVPRSKDRGPDAPDIRRI 65
Query 65 AALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTTVSAQ 124
A + E EAVEVIVGLP+TL G++A A A+ L R+V P PVR+ADERLTTV+A
Sbjct 66 ADIVEEYEAVEVIVGLPQTLRGERGKAASIATVFAKRLRRKVDPIPVRMADERLTTVTAA 125
Query 125 RSLRQAGVRASEQRAVIDQAAAVAILQSWLDERLAAMAGTQEGSD 169
R+LR++GV A QR VIDQAAAVAILQ WLDER ++ G D
Sbjct 126 RALRESGVSARGQRPVIDQAAAVAILQGWLDERSRSVNAGDVGGD 170
>gi|333919510|ref|YP_004493091.1| putative Holliday junction resolvase [Amycolicicoccus subflavus
DQS3-9A1]
gi|333481731|gb|AEF40291.1| Putative Holliday junction resolvase [Amycolicicoccus subflavus
DQS3-9A1]
Length=170
Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/153 (62%), Positives = 113/153 (74%), Gaps = 6/153 (3%)
Query 9 PDRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRD----RSGKHLRRL 64
PDRPG DPGRGRR+GIDVG+ RIGVA SDPD ILA+PVETV R+ + L ++
Sbjct 9 PDRPG--PDDPGRGRRIGIDVGSVRIGVAVSDPDGILASPVETVTRNTRVVSDSRELDQI 66
Query 65 AALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTTVSAQ 124
AA+ E AVEV+VGLPRTL G +A A+ AE L R+ P P+RL+DER+TTV+AQ
Sbjct 67 AAIIEEYSAVEVVVGLPRTLRGEQGHAADAALTFAEQLRGRIQPIPIRLSDERMTTVTAQ 126
Query 125 RSLRQAGVRASEQRAVIDQAAAVAILQSWLDER 157
R LR AG +A +QRA+IDQAAAVAILQ WLDER
Sbjct 127 RDLRAAGRKAKQQRAIIDQAAAVAILQGWLDER 159
>gi|226306473|ref|YP_002766433.1| Holliday junction resolvase [Rhodococcus erythropolis PR4]
gi|229493502|ref|ZP_04387287.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|259495711|sp|C0ZZA9.1|RUVX_RHOE4 RecName: Full=Putative Holliday junction resolvase
gi|226185590|dbj|BAH33694.1| putative Holliday junction resolvase [Rhodococcus erythropolis
PR4]
gi|229319463|gb|EEN85299.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=177
Score = 171 bits (432), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 98/171 (58%), Positives = 119/171 (70%), Gaps = 6/171 (3%)
Query 4 AQHRPPDRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRDRS----GK 59
A + PDRPG DPGRGRR+ IDVG+ RIGVA SDPD ILATPVETV R +
Sbjct 3 ATQQGPDRPG--IDDPGRGRRIAIDVGSVRIGVASSDPDGILATPVETVPRSKERGPDAP 60
Query 60 HLRRLAALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLT 119
+RR+ A+ +E EAVEVIVGLP+TL G++A A A+ L R V P PVRL+DERLT
Sbjct 61 DIRRIIAIVSEYEAVEVIVGLPQTLRGEQGKAAGIATAFAKRLQRAVEPIPVRLSDERLT 120
Query 120 TVSAQRSLRQAGVRASEQRAVIDQAAAVAILQSWLDERLAAMAGTQEGSDA 170
TV+A R+LR++GV+A QR +IDQAAAV ILQ WLDER A+ + DA
Sbjct 121 TVTAARNLRESGVKARGQRPMIDQAAAVEILQGWLDERSRAVKPGESSKDA 171
>gi|169629934|ref|YP_001703583.1| putative Holliday junction resolvase [Mycobacterium abscessus
ATCC 19977]
gi|226731629|sp|B1MCF8.1|RUVX_MYCA9 RecName: Full=Putative Holliday junction resolvase
gi|169241901|emb|CAM62929.1| Putative Holliday junction resolvase [Mycobacterium abscessus]
gi|340796751|gb|AEK70603.1| putative Holliday junction resolvase [Mycobacterium abscessus]
gi|340796760|gb|AEK70607.1| putative Holliday junction resolvase [Mycobacterium massiliense]
Length=166
Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/150 (62%), Positives = 111/150 (74%), Gaps = 3/150 (2%)
Query 9 PDRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRD-RSGKHLRRLAAL 67
PDRPG DPGRGRRLG+DVG RIG++ SDPD ILATPVETV RD + RR+A L
Sbjct 9 PDRPG--PDDPGRGRRLGVDVGTVRIGISSSDPDGILATPVETVSRDAKEDSDFRRIAEL 66
Query 68 AAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTTVSAQRSL 127
E+ VEV+VGLPR L + G SA+DA A L R++P PVRL DER TT +AQRSL
Sbjct 67 VEEMSVVEVVVGLPRNLREGTGSSARDAAGFARELGERIAPVPVRLVDERFTTTTAQRSL 126
Query 128 RQAGVRASEQRAVIDQAAAVAILQSWLDER 157
R+AGVR+ +QR +IDQAAAVAILQ WL++R
Sbjct 127 REAGVRSRQQRGIIDQAAAVAILQDWLEQR 156
>gi|54025613|ref|YP_119855.1| Holliday junction resolvase-like protein [Nocardia farcinica
IFM 10152]
gi|62900947|sp|Q5YTK0.1|RUVX_NOCFA RecName: Full=Putative Holliday junction resolvase
gi|54017121|dbj|BAD58491.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=180
Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 104/173 (61%), Positives = 117/173 (68%), Gaps = 8/173 (4%)
Query 4 AQHRPPDRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRDRS------ 57
AQ R +RP DPA DPGRGRRLGIDVG+ RIGVA SDPD ILATPVETV R +
Sbjct 3 AQERS-ERP-DPATDPGRGRRLGIDVGSVRIGVASSDPDGILATPVETVPRAKKVPRGTV 60
Query 58 GKHLRRLAALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADER 117
+ R+A + E EAVEVIVGLPRTL G +A AI AE L R + +RL+DER
Sbjct 61 SPDIARIAEIVREYEAVEVIVGLPRTLRGEKGSAATAAIAFAERLRREIPDVAIRLSDER 120
Query 118 LTTVSAQRSLRQAGVRASEQRAVIDQAAAVAILQSWLDERLAAMAGTQEGSDA 170
LTTVSA R+LR +GVRA QR VIDQAAAV+ILQ WLDER A M E A
Sbjct 121 LTTVSAARALRDSGVRARGQRQVIDQAAAVSILQGWLDERSAVMRSVGEAESA 173
>gi|340796756|gb|AEK70605.1| putative Holliday junction resolvase [Mycobacterium chelonae]
Length=166
Score = 159 bits (403), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 94/150 (63%), Positives = 110/150 (74%), Gaps = 3/150 (2%)
Query 9 PDRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRD-RSGKHLRRLAAL 67
PDRPG DPGRGRRLG+DVG RIGVA DPD ILATPVETV RD + RR+ L
Sbjct 9 PDRPG--PDDPGRGRRLGVDVGTVRIGVASCDPDGILATPVETVARDNKEDSDFRRIVEL 66
Query 68 AAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTTVSAQRSL 127
EL VEV+VGLPR L + G SA+DA A L+ R++P PVRL DER TT +AQRSL
Sbjct 67 VEELSVVEVVVGLPRNLREGTGASARDAAGFARELSERIAPVPVRLVDERFTTTTAQRSL 126
Query 128 RQAGVRASEQRAVIDQAAAVAILQSWLDER 157
R+AGVR+ +QR +IDQAAAVAILQ WL++R
Sbjct 127 REAGVRSRQQRGIIDQAAAVAILQDWLEQR 156
>gi|302525837|ref|ZP_07278179.1| Holliday junction resolvase YqgF [Streptomyces sp. AA4]
gi|302434732|gb|EFL06548.1| Holliday junction resolvase YqgF [Streptomyces sp. AA4]
Length=166
Score = 157 bits (397), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 93/150 (62%), Positives = 110/150 (74%), Gaps = 3/150 (2%)
Query 7 RPPDRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRD-RSGKHLRRLA 65
R PDRPG+ DPGRGRRL +DVG+ R+GVA SDP +LA+P+ T+ RD + L RLA
Sbjct 7 RGPDRPGE--SDPGRGRRLAVDVGSVRVGVALSDPAPVLASPLVTLSRDAKDDSDLDRLA 64
Query 66 ALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTTVSAQR 125
L E E VEVIVGLPRTLA+R G +A A+ AE LA RV PVRLADERLTTV+A R
Sbjct 65 ELVTEHEVVEVIVGLPRTLANRQGAAADLALAYAEKLAGRVGDVPVRLADERLTTVTASR 124
Query 126 SLRQAGVRASEQRAVIDQAAAVAILQSWLD 155
L Q GV+ +QRAV+DQAAAV ILQ+WLD
Sbjct 125 MLSQRGVKGRKQRAVVDQAAAVEILQAWLD 154
>gi|340796758|gb|AEK70606.1| putative Holliday junction resolvase [Mycobacterium immunogenum]
Length=166
Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/150 (64%), Positives = 111/150 (74%), Gaps = 3/150 (2%)
Query 9 PDRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRD-RSGKHLRRLAAL 67
PDRPG DPGRGRRLG+DVG RIGVA DPD ILATPVETV RD ++ RR+A L
Sbjct 9 PDRPG--PDDPGRGRRLGVDVGTVRIGVASCDPDGILATPVETVARDLKADNDFRRIADL 66
Query 68 AAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTTVSAQRSL 127
EL VEV+VGLPR L + G SA+DA A L R++P PVRL DER TT +AQRSL
Sbjct 67 VEELGVVEVVVGLPRNLREGTGSSARDAAGFARELGARIAPVPVRLVDERFTTTTAQRSL 126
Query 128 RQAGVRASEQRAVIDQAAAVAILQSWLDER 157
R+AGVR+ +QR +IDQAAAVAILQ WL++R
Sbjct 127 REAGVRSRQQRGIIDQAAAVAILQDWLEQR 156
>gi|300781085|ref|ZP_07090939.1| Holliday junction resolvase family protein [Corynebacterium genitalium
ATCC 33030]
gi|300532792|gb|EFK53853.1| Holliday junction resolvase family protein [Corynebacterium genitalium
ATCC 33030]
Length=167
Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 90/154 (59%), Positives = 103/154 (67%), Gaps = 7/154 (4%)
Query 9 PDRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRR-----DRSGKHLRR 63
PD PG DPG GRR+GIDVG RIGVA SD D +LATPVETV R DR G + R
Sbjct 5 PDTPG--VDDPGPGRRIGIDVGTVRIGVASSDRDGLLATPVETVERVTGFKDRDGADIDR 62
Query 64 LAALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTTVSA 123
L + +E +AVEV+VGLPR L S + A E+A + RR PVR ADERLTTV A
Sbjct 63 LLDIISEYDAVEVVVGLPRDLKGNGSSSVKHAKEIAFRIGRRNPDVPVRFADERLTTVEA 122
Query 124 QRSLRQAGVRASEQRAVIDQAAAVAILQSWLDER 157
+LR +GV A + RAVIDQAAAVAILQSWLD R
Sbjct 123 TNALRLSGVNARDGRAVIDQAAAVAILQSWLDGR 156
>gi|296139684|ref|YP_003646927.1| Holliday junction resolvase YqgF [Tsukamurella paurometabola
DSM 20162]
gi|296027818|gb|ADG78588.1| Holliday junction resolvase YqgF [Tsukamurella paurometabola
DSM 20162]
Length=161
Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 92/154 (60%), Positives = 108/154 (71%), Gaps = 15/154 (9%)
Query 13 GDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRDRSGKHLRRLAALAAELE 72
G PA + RGRRL +DVG ARIGVA SDPD ILATPVETV+ R G LRR+A L + E
Sbjct 3 GSPAWE--RGRRLALDVGKARIGVAVSDPDGILATPVETVKAARDGSDLRRIAQLVTDYE 60
Query 73 AVEVIVGLPRTLADRIGRSAQDAIELAEALARRVS--------PTP-VRLADERLTTVSA 123
VE+++GLPRTL G SA+ +AE A R++ P+P V +DER TTV+A
Sbjct 61 PVEIVIGLPRTLRGDRGESAR----MAEGFAARLATVLDATDQPSPRVCFSDERFTTVTA 116
Query 124 QRSLRQAGVRASEQRAVIDQAAAVAILQSWLDER 157
QR+LR GVRA EQRAVIDQAAAVAILQ WLDER
Sbjct 117 QRALRDNGVRAKEQRAVIDQAAAVAILQGWLDER 150
>gi|256379271|ref|YP_003102931.1| Holliday junction resolvase YqgF [Actinosynnema mirum DSM 43827]
gi|255923574|gb|ACU39085.1| Holliday junction resolvase YqgF [Actinosynnema mirum DSM 43827]
Length=170
Score = 153 bits (387), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 94/147 (64%), Positives = 109/147 (75%), Gaps = 3/147 (2%)
Query 10 DRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRD-RSGKHLRRLAALA 68
D PG DPG GRRLG+DVGA R+GVA SDP A LATP+ T+ RD ++G+ L L LA
Sbjct 5 DTPG--VDDPGLGRRLGVDVGAVRVGVALSDPGAFLATPLVTLSRDEKNGRDLDDLVGLA 62
Query 69 AELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTTVSAQRSLR 128
AE + VEV+VGLPRTLA + G +AQ A A ALA RV+P PVRL DERLTTV+A R L
Sbjct 63 AEHDVVEVVVGLPRTLAGKHGPAAQAATAYAAALAERVAPLPVRLTDERLTTVTASRVLA 122
Query 129 QAGVRASEQRAVIDQAAAVAILQSWLD 155
Q GVR +QRAV+DQAAAV ILQSWLD
Sbjct 123 QRGVRGKKQRAVVDQAAAVEILQSWLD 149
>gi|257055558|ref|YP_003133390.1| hypothetical protein Svir_15280 [Saccharomonospora viridis DSM
43017]
gi|256585430|gb|ACU96563.1| conserved hypothetical protein TIGR00250 [Saccharomonospora viridis
DSM 43017]
Length=154
Score = 147 bits (370), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 86/140 (62%), Positives = 103/140 (74%), Gaps = 1/140 (0%)
Query 17 HDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRD-RSGKHLRRLAALAAELEAVE 75
+DPG GRRL +DVG+ R+GVA SDP ILA+P+ T+ RD + K L LA L AE + VE
Sbjct 2 NDPGPGRRLAVDVGSVRVGVALSDPTPILASPLVTLSRDADTDKDLEELARLVAEHDVVE 61
Query 76 VIVGLPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTTVSAQRSLRQAGVRAS 135
VIVGLPRTLADR G +A A + A LA R+SP VRLADERL+TVSA R L Q GV+
Sbjct 62 VIVGLPRTLADRHGTAAAIAADYARRLAERISPVAVRLADERLSTVSASRMLSQRGVKGR 121
Query 136 EQRAVIDQAAAVAILQSWLD 155
+QRAV+DQAAAV LQ+WLD
Sbjct 122 KQRAVVDQAAAVEFLQAWLD 141
>gi|213966117|ref|ZP_03394304.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
gi|213951215|gb|EEB62610.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
Length=167
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/163 (54%), Positives = 102/163 (63%), Gaps = 8/163 (4%)
Query 10 DRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETV-----RRDRSGKHLRRL 64
D PG DPGRGRRLGIDVG R+GVA SDPD ILATPVETV R+D G + RL
Sbjct 7 DTPG--QDDPGRGRRLGIDVGDVRVGVAVSDPDCILATPVETVTRATGRKDPDGPDIDRL 64
Query 65 AALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVSP-TPVRLADERLTTVSA 123
LA ELE VE++VG+P L G SA+ A ++ L RR+ V ADER+TTV A
Sbjct 65 VELATELEVVEIVVGMPLMLDGSFGTSARKATDVGFRLQRRLGDRVVVHYADERMTTVMA 124
Query 124 QRSLRQAGVRASEQRAVIDQAAAVAILQSWLDERLAAMAGTQE 166
Q L AG+ R +IDQAAAV ILQSWLD R A+ G +
Sbjct 125 QSRLHAAGIDVKSGRKIIDQAAAVEILQSWLDRRAKALDGITD 167
>gi|271967371|ref|YP_003341567.1| endonuclease involved in recombination-like protein [Streptosporangium
roseum DSM 43021]
gi|270510546|gb|ACZ88824.1| endonuclease involved in recombination-like protein [Streptosporangium
roseum DSM 43021]
Length=163
Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 79/134 (59%), Positives = 103/134 (77%), Gaps = 2/134 (1%)
Query 22 GRRLGIDVGAARIGVACSDPDAILATPVETVRRDRSGKHLRRLAALAAELEAVEVIVGLP 81
G RLG+DVG+ RIGVA SDP +LATPVETVRR R L RLA +AAE E VE++VGLP
Sbjct 6 GIRLGVDVGSVRIGVARSDPSGLLATPVETVRRGRG--DLDRLAEIAAEYEVVEIVVGLP 63
Query 82 RTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTTVSAQRSLRQAGVRASEQRAVI 141
+L+ R G++A+ A + A ++ R++P PVRL DERLTTV+AQ+ LR +GV+A QRAV+
Sbjct 64 TSLSGREGQAAEAARDFATRISLRLAPIPVRLFDERLTTVTAQQGLRASGVKAKNQRAVV 123
Query 142 DQAAAVAILQSWLD 155
DQAAA+ +LQ+ LD
Sbjct 124 DQAAAIVLLQAALD 137
>gi|237785597|ref|YP_002906302.1| Holliday junction resolvase-like protein [Corynebacterium kroppenstedtii
DSM 44385]
gi|259495700|sp|C4LIV4.1|RUVX_CORK4 RecName: Full=Putative Holliday junction resolvase
gi|237758509|gb|ACR17759.1| hypothetical protein ckrop_1006 [Corynebacterium kroppenstedtii
DSM 44385]
Length=164
Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/158 (53%), Positives = 101/158 (64%), Gaps = 11/158 (6%)
Query 9 PDRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETV-----RRDRSGKHLRR 63
PDRPG+ DPG GRRLG+DVG RIGVA SDPD ILATPV TV RR G+ +
Sbjct 6 PDRPGE--DDPGPGRRLGLDVGTVRIGVAVSDPDGILATPVSTVARTTKRRGPDGEDIDS 63
Query 64 LAALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVS----PTPVRLADERLT 119
+ LA + VEVIVGLPR L G S + A ++ + RR+ P+R DER+T
Sbjct 64 IVQLAHDYSVVEVIVGLPRMLDGSAGSSVKHAQDVGFRIRRRLERDGVDVPIRYVDERMT 123
Query 120 TVSAQRSLRQAGVRASEQRAVIDQAAAVAILQSWLDER 157
TV AQ +L AG+ E R+VIDQAAAV ILQ+WLD+R
Sbjct 124 TVMAQSNLHDAGISVKEGRSVIDQAAAVEILQTWLDQR 161
>gi|334696984|gb|AEG81781.1| hypothetical protein CULC809_01249 [Corynebacterium ulcerans
809]
Length=197
Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 92/175 (53%), Positives = 107/175 (62%), Gaps = 17/175 (9%)
Query 9 PDRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETV-----RRDRSGKHLRR 63
PD PG DPG GRRLGIDVG RIGVA SD DA LA PVETV RDR + R
Sbjct 5 PDTPG--IDDPGNGRRLGIDVGTVRIGVAASDRDARLAMPVETVPRKTGLRDRDQGDIDR 62
Query 64 LAALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRV----SPTPVRLADERLT 119
L L E VEV+VGLPR L +S + A ++A ++RR+ S PVRLADERLT
Sbjct 63 LLELIREYSVVEVVVGLPRDLKGNGSKSVKHAKDIAFRISRRLQAAESSIPVRLADERLT 122
Query 120 TVSAQRSLRQAGVRASEQRAVIDQAAAVAILQSWLD------ERLAAMAGTQEGS 168
TV A ++LR +G+ R VIDQAAAV ILQSWLD ER + T+EGS
Sbjct 123 TVVATQALRASGISEKTGRKVIDQAAAVEILQSWLDGRHAYKERNDMASSTEEGS 177
>gi|345010674|ref|YP_004813028.1| Holliday junction resolvase [Streptomyces violaceusniger Tu 4113]
gi|344037023|gb|AEM82748.1| Holliday junction resolvase [Streptomyces violaceusniger Tu 4113]
Length=154
Score = 141 bits (355), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 85/144 (60%), Positives = 104/144 (73%), Gaps = 3/144 (2%)
Query 21 RGRRLGIDVGAARIGVACSDPDAILATPVETV-RRDRSGKHLRRLAALAAELEAVEVIVG 79
RGRR+ IDVG ARIGVA DPD ILATPVETV RD H +RLAAL E E +EV+VG
Sbjct 3 RGRRIAIDVGDARIGVASCDPDGILATPVETVPGRDIPAAH-KRLAALVEEYEPLEVVVG 61
Query 80 LPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTTVSAQRSLRQAGVRASEQRA 139
LPR+L+ R G +A A LARRV+P PVRL DER+TTV+A + LR +GV + + R+
Sbjct 62 LPRSLSGREGPAAAKVRTFARELARRVAPVPVRLVDERMTTVTASQGLRASGVTSKKGRS 121
Query 140 VIDQAAAVAILQSWLD-ERLAAMA 162
V+DQAAAV ILQS L+ ER++ A
Sbjct 122 VVDQAAAVVILQSALETERVSGRA 145
>gi|337290870|ref|YP_004629891.1| hypothetical protein CULC22_01262 [Corynebacterium ulcerans BR-AD22]
gi|334699176|gb|AEG83972.1| hypothetical protein CULC22_01262 [Corynebacterium ulcerans BR-AD22]
Length=197
Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 91/175 (52%), Positives = 107/175 (62%), Gaps = 17/175 (9%)
Query 9 PDRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETV-----RRDRSGKHLRR 63
PD PG DPG GRRLG+DVG RIGVA SD DA LA PVETV RDR + R
Sbjct 5 PDTPG--IDDPGNGRRLGVDVGTVRIGVAVSDRDARLAMPVETVPRKTGLRDRDQGDIDR 62
Query 64 LAALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRV----SPTPVRLADERLT 119
L L E VEV+VGLPR L +S + A ++A ++RR+ S PVRLADERLT
Sbjct 63 LLELIREYSVVEVVVGLPRDLKGNGSKSVKHAKDIAFRISRRLQAAESSIPVRLADERLT 122
Query 120 TVSAQRSLRQAGVRASEQRAVIDQAAAVAILQSWLD------ERLAAMAGTQEGS 168
TV A ++LR +G+ R VIDQAAAV ILQSWLD ER + T+EGS
Sbjct 123 TVVATQALRASGISEKTGRKVIDQAAAVEILQSWLDGRHAYKERNDMASSTEEGS 177
>gi|255325070|ref|ZP_05366176.1| conserved hypothetical protein [Corynebacterium tuberculostearicum
SK141]
gi|255297635|gb|EET76946.1| conserved hypothetical protein [Corynebacterium tuberculostearicum
SK141]
Length=183
Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 86/166 (52%), Positives = 107/166 (65%), Gaps = 15/166 (9%)
Query 9 PDRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRR-----DRSGKHLRR 63
PD PG DPG+GRRL +DVG RIGVA S+ +A LATPVETVRR DR + R
Sbjct 6 PDSPG--VDDPGQGRRLALDVGTVRIGVAVSNREATLATPVETVRRETGFKDRDKGDIDR 63
Query 64 LAALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVS--------PTPVRLAD 115
+ L +AVEV+VGLPR L +S + A E+A + RR++ P PVRLAD
Sbjct 64 ILELIDSYDAVEVVVGLPRDLQGNGSKSVKHAKEIAFRIRRRLNRDANIDKVPPPVRLAD 123
Query 116 ERLTTVSAQRSLRQAGVRASEQRAVIDQAAAVAILQSWLDERLAAM 161
ERLTTV+A +LR +GV + R VIDQAAAV ILQ+WLD R +A+
Sbjct 124 ERLTTVAATTALRASGVSEKKGRKVIDQAAAVEILQTWLDGRASAL 169
>gi|289758683|ref|ZP_06518061.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|289714247|gb|EFD78259.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
Length=107
Score = 140 bits (353), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 84/86 (98%), Positives = 85/86 (99%), Gaps = 0/86 (0%)
Query 1 VVPAQHRPPDRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRDRSGKH 60
+VPAQHRPPDRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRDRSGKH
Sbjct 1 MVPAQHRPPDRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRDRSGKH 60
Query 61 LRRLAALAAELEAVEVIVGLPRTLAD 86
LRRLAALAAELEAVEVIVGLPRTL D
Sbjct 61 LRRLAALAAELEAVEVIVGLPRTLPD 86
>gi|225021331|ref|ZP_03710523.1| hypothetical protein CORMATOL_01350 [Corynebacterium matruchotii
ATCC 33806]
gi|224945713|gb|EEG26922.1| hypothetical protein CORMATOL_01350 [Corynebacterium matruchotii
ATCC 33806]
Length=174
Score = 140 bits (353), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 83/165 (51%), Positives = 103/165 (63%), Gaps = 11/165 (6%)
Query 9 PDRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRR-----DRSGKHLRR 63
PD+PG HDPG GRRLG+DVG RIGVA S DA LA P+ET++R DR + R
Sbjct 6 PDQPG--VHDPGPGRRLGVDVGTVRIGVALSGTDATLAMPLETIKRETGFKDRDKSDIDR 63
Query 64 LAALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVS----PTPVRLADERLT 119
L L + + VEVIVGLPR L +S + A E+A + RR+ PVR+ADERL+
Sbjct 64 LITLITDNDVVEVIVGLPRDLKGNGSKSVKHAKEIAFRINRRLQGLELSIPVRMADERLS 123
Query 120 TVSAQRSLRQAGVRASEQRAVIDQAAAVAILQSWLDERLAAMAGT 164
TV A ++LR +GV R +IDQAAAV ILQSWLD R + T
Sbjct 124 TVVAHQALRASGVSEKSGRKIIDQAAAVEILQSWLDGRTNYLHRT 168
>gi|305681376|ref|ZP_07404183.1| RNAse H domain protein, YqgF family [Corynebacterium matruchotii
ATCC 14266]
gi|305659581|gb|EFM49081.1| RNAse H domain protein, YqgF family [Corynebacterium matruchotii
ATCC 14266]
Length=174
Score = 140 bits (352), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 83/165 (51%), Positives = 102/165 (62%), Gaps = 11/165 (6%)
Query 9 PDRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRR-----DRSGKHLRR 63
PD+PG HDPG GRRLG+DVG RIGVA S DA LA P+ET++R DR + R
Sbjct 6 PDQPG--VHDPGPGRRLGVDVGTVRIGVALSGTDATLAMPLETIKRETGFKDRDKSDIDR 63
Query 64 LAALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVS----PTPVRLADERLT 119
L L + VEVIVGLPR L +S + A E+A + RR+ PVR+ADERL+
Sbjct 64 LITLITDNNVVEVIVGLPRDLKGNGSKSVKHAKEIAFRINRRLQGLELSIPVRMADERLS 123
Query 120 TVSAQRSLRQAGVRASEQRAVIDQAAAVAILQSWLDERLAAMAGT 164
TV A ++LR +GV R +IDQAAAV ILQSWLD R + T
Sbjct 124 TVVAHQALRASGVSEKSGRKIIDQAAAVEILQSWLDGRTNYLHRT 168
>gi|333990980|ref|YP_004523594.1| Holliday junction resolvase-like protein [Mycobacterium sp. JDM601]
gi|333486948|gb|AEF36340.1| Holliday junction resolvase-like protein [Mycobacterium sp. JDM601]
Length=150
Score = 140 bits (352), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 92/135 (69%), Positives = 109/135 (81%), Gaps = 4/135 (2%)
Query 27 IDVGAARIGVACSDPDAILATPVETVRRDRSGKHLRRLAALAAELEAVEVIVGLPRTLAD 86
+DVG+ RIGV+CSDPD +LATPVETVRR SG HLRRLA L EL+ VEV+VGLPRTLAD
Sbjct 1 MDVGSVRIGVSCSDPDGLLATPVETVRRHPSGSHLRRLAGLVDELDVVEVVVGLPRTLAD 60
Query 87 RIGRSAQDAIELAEALARRVSP----TPVRLADERLTTVSAQRSLRQAGVRASEQRAVID 142
R G +A DAI +A+ LAR ++ PVRLADERL+TVSA R+L+ AGVR+ QR+VID
Sbjct 61 RTGAAAADAIAVADDLARMLAKWDRRVPVRLADERLSTVSAARALQAAGVRSKRQRSVID 120
Query 143 QAAAVAILQSWLDER 157
QAAAV ILQSWLD+R
Sbjct 121 QAAAVTILQSWLDQR 135
>gi|297155786|gb|ADI05498.1| Holliday junction resolvase-like protein [Streptomyces bingchenggensis
BCW-1]
Length=154
Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/144 (58%), Positives = 103/144 (72%), Gaps = 3/144 (2%)
Query 21 RGRRLGIDVGAARIGVACSDPDAILATPVETV-RRDRSGKHLRRLAALAAELEAVEVIVG 79
RGRR+ IDVG ARIGVA DPD ILATPVETV RD H +RLAA+ E E +EV+VG
Sbjct 3 RGRRIAIDVGDARIGVASCDPDGILATPVETVPGRDIPAAH-KRLAAVVEEYEPIEVVVG 61
Query 80 LPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTTVSAQRSLRQAGVRASEQRA 139
LPR+L+ R G +A A ARRV+P PVRL DER+TTV+A + LR +GV + + R+
Sbjct 62 LPRSLSGREGPAAAKVRTFAREFARRVAPVPVRLVDERMTTVTAAQGLRASGVTSKKGRS 121
Query 140 VIDQAAAVAILQSWLD-ERLAAMA 162
V+DQAAAV ILQS L+ ER++ A
Sbjct 122 VVDQAAAVVILQSALETERVSGRA 145
>gi|291450310|ref|ZP_06589700.1| conserved hypothetical protein [Streptomyces albus J1074]
gi|291353259|gb|EFE80161.1| conserved hypothetical protein [Streptomyces albus J1074]
Length=158
Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/150 (56%), Positives = 103/150 (69%), Gaps = 2/150 (1%)
Query 21 RGRRLGIDVGAARIGVACSDPDAILATPVETV-RRDRSGKHLRRLAALAAELEAVEVIVG 79
RGRRL +DVG ARIGVA DPD ILATPVETV RD H RRLAAL E E +EV+VG
Sbjct 7 RGRRLAVDVGDARIGVASCDPDGILATPVETVPGRDVPAAH-RRLAALVEEYEPIEVVVG 65
Query 80 LPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTTVSAQRSLRQAGVRASEQRA 139
LPR+L G +A A+ LAR ++P PVRL DER++TV+A + +R +GVR+ + RA
Sbjct 66 LPRSLKGGEGPAAVKVRGFAQELARTIAPVPVRLVDERMSTVTAAQGMRASGVRSKKGRA 125
Query 140 VIDQAAAVAILQSWLDERLAAMAGTQEGSD 169
VIDQAAAV ILQS L+ A+ EG +
Sbjct 126 VIDQAAAVVILQSALESERASGDAPGEGVE 155
>gi|291009599|ref|ZP_06567572.1| Holliday junction resolvase YqgF [Saccharopolyspora erythraea
NRRL 2338]
Length=158
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/143 (60%), Positives = 103/143 (73%), Gaps = 1/143 (0%)
Query 16 AHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRRD-RSGKHLRRLAALAAELEAV 74
H PG GRRLGIDVGA R+GVA SDP +LATP+ T++RD G L RL + AE E V
Sbjct 7 GHRPGPGRRLGIDVGAVRVGVALSDPAPMLATPLVTLQRDVEGGGDLGRLVEIVAEHEVV 66
Query 75 EVIVGLPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTTVSAQRSLRQAGVRA 134
EV+VG+PRTLA R G +A+ A ALA R++P PV +DERLTTV+A R L + GVR
Sbjct 67 EVVVGMPRTLAGRHGPAAEAAESYGTALAERIAPVPVVYSDERLTTVTASRMLSKRGVRG 126
Query 135 SEQRAVIDQAAAVAILQSWLDER 157
+QRAV+DQAAAV ILQ+WLD R
Sbjct 127 KKQRAVVDQAAAVEILQAWLDSR 149
>gi|343924307|ref|ZP_08763858.1| putative Holliday junction resolvase [Gordonia alkanivorans NBRC
16433]
gi|343765741|dbj|GAA10784.1| putative Holliday junction resolvase [Gordonia alkanivorans NBRC
16433]
Length=149
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/138 (56%), Positives = 93/138 (68%), Gaps = 1/138 (0%)
Query 21 RGRRLGIDVGAARIGVACSDPDAILATPVETVRRDRSGK-HLRRLAALAAELEAVEVIVG 79
RGRRLGIDVG+ RIGVA DPD ILATPVETVRR S L R+ L AE A+ V++G
Sbjct 11 RGRRLGIDVGSVRIGVAVCDPDGILATPVETVRRTPSATTDLDRIVELVAEYGAIGVVIG 70
Query 80 LPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTTVSAQRSLRQAGVRASEQRA 139
LP+TL + G +A+ A + LA R++P V DER TTV+AQ++L +G R
Sbjct 71 LPKTLKNTTGVAAETARAFGDRLAERIAPAEVHWQDERFTTVTAQQALHASGRTVKSSRG 130
Query 140 VIDQAAAVAILQSWLDER 157
VIDQAAAVAILQ WLD R
Sbjct 131 VIDQAAAVAILQGWLDAR 148
>gi|311739531|ref|ZP_07713366.1| Holliday junction resolvase family protein [Corynebacterium pseudogenitalium
ATCC 33035]
gi|311305347|gb|EFQ81415.1| Holliday junction resolvase family protein [Corynebacterium pseudogenitalium
ATCC 33035]
Length=183
Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/166 (52%), Positives = 106/166 (64%), Gaps = 15/166 (9%)
Query 9 PDRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRR-----DRSGKHLRR 63
PD PG DPG+GRRL +DVG RIGVA S+ +A LATPVETV R DR + R
Sbjct 6 PDSPG--VDDPGQGRRLALDVGTVRIGVAVSNREATLATPVETVHRETGFKDRDKGDIDR 63
Query 64 LAALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVS--------PTPVRLAD 115
+ L +AVEV+VGLPR L +S + A E+A + RR++ P PVRLAD
Sbjct 64 ILELIDSYDAVEVVVGLPRDLQGNGSKSVKHAKEIAFRIRRRLNRDANIDKVPPPVRLAD 123
Query 116 ERLTTVSAQRSLRQAGVRASEQRAVIDQAAAVAILQSWLDERLAAM 161
ERLTTV+A +LR +GV + R VIDQAAAV ILQ+WLD R +A+
Sbjct 124 ERLTTVAATTALRASGVSEKKGRKVIDQAAAVEILQTWLDGRASAL 169
>gi|300858566|ref|YP_003783549.1| hypothetical protein cpfrc_01149 [Corynebacterium pseudotuberculosis
FRC41]
gi|300686020|gb|ADK28942.1| hypothetical protein cpfrc_01149 [Corynebacterium pseudotuberculosis
FRC41]
gi|302206278|gb|ADL10620.1| Holliday junction resolvase [Corynebacterium pseudotuberculosis
C231]
gi|302330835|gb|ADL21029.1| Holliday junction resolvase [Corynebacterium pseudotuberculosis
1002]
gi|308276520|gb|ADO26419.1| Putative Holliday junction resolvase [Corynebacterium pseudotuberculosis
I19]
gi|341824961|gb|AEK92482.1| Holliday junction resolvase [Corynebacterium pseudotuberculosis
PAT10]
Length=197
Score = 138 bits (347), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 90/173 (53%), Positives = 106/173 (62%), Gaps = 16/173 (9%)
Query 9 PDRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETV-----RRDRSGKHLRR 63
PD PG DPG GRRLGIDVG RIGVA SD DA LA PVETV RDR + R
Sbjct 5 PDTPG--IDDPGNGRRLGIDVGTVRIGVAASDRDARLAMPVETVPRKTGLRDRDQGDIDR 62
Query 64 LAALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRV----SPTPVRLADERLT 119
L + E VEV+VGLPR L +S + A ++A ++RR+ S PVRLADERLT
Sbjct 63 LLEIIREYAVVEVVVGLPRDLKGNGSKSVKHAKDIAFRISRRLQASESSIPVRLADERLT 122
Query 120 TVSAQRSLRQAGVRASEQRAVIDQAAAVAILQSWLDERLAA-----MAGTQEG 167
TV A ++LR +G+ R VIDQAAAV ILQSWLD R A +AG+ E
Sbjct 123 TVVATQALRASGISEKTGRKVIDQAAAVEILQSWLDGRHAYKERNDVAGSTEN 175
>gi|306836212|ref|ZP_07469196.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Corynebacterium
accolens ATCC 49726]
gi|304567933|gb|EFM43514.1| YqgF family crossover junction endodeoxyribonuclease, YrrK [Corynebacterium
accolens ATCC 49726]
Length=183
Score = 137 bits (346), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 86/166 (52%), Positives = 104/166 (63%), Gaps = 15/166 (9%)
Query 9 PDRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRR-----DRSGKHLRR 63
PD PG DPG GRRL +DVG RIGVA S+ +A LATPVETV R DR + + R
Sbjct 6 PDSPG--VDDPGEGRRLALDVGTVRIGVAASNREATLATPVETVPRKTGFKDRDQEDIDR 63
Query 64 LAALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVS--------PTPVRLAD 115
+ L AVEVIVGLPR L +S + A E+A + RR++ P PVRLAD
Sbjct 64 ILELIGAYSAVEVIVGLPRDLHGNGSKSVKHAKEIAFRIRRRLNQDENIDKVPPPVRLAD 123
Query 116 ERLTTVSAQRSLRQAGVRASEQRAVIDQAAAVAILQSWLDERLAAM 161
ERLTTV+A +LR +GV + R +IDQAAAV ILQSWLD R A+
Sbjct 124 ERLTTVAATTALRASGVSEKKGRKIIDQAAAVEILQSWLDGRANAL 169
>gi|320011911|gb|ADW06761.1| Holliday junction resolvase YqgF [Streptomyces flavogriseus ATCC
33331]
Length=157
Score = 137 bits (346), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 82/150 (55%), Positives = 101/150 (68%), Gaps = 2/150 (1%)
Query 21 RGRRLGIDVGAARIGVACSDPDAILATPVETV-RRDRSGKHLRRLAALAAELEAVEVIVG 79
RGRRL IDVG ARIGVA DPD ILATPVETV RD H RRL + E E +EVIVG
Sbjct 6 RGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAAH-RRLGQIVEEYEPIEVIVG 64
Query 80 LPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTTVSAQRSLRQAGVRASEQRA 139
LPR+L G +A A+ AR V+P PVRL DER+TTV+A + LR +GV++ + R+
Sbjct 65 LPRSLGGGEGPAAAKVRAFAQVFARAVAPIPVRLLDERMTTVTATQGLRASGVKSKKGRS 124
Query 140 VIDQAAAVAILQSWLDERLAAMAGTQEGSD 169
VIDQAAAV ILQ+ L+ A+ + EG +
Sbjct 125 VIDQAAAVVILQNALESERASGSAPGEGVE 154
>gi|227549180|ref|ZP_03979229.1| Holliday junction resolvase family protein [Corynebacterium lipophiloflavum
DSM 44291]
gi|227078740|gb|EEI16703.1| Holliday junction resolvase family protein [Corynebacterium lipophiloflavum
DSM 44291]
Length=164
Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 86/162 (54%), Positives = 99/162 (62%), Gaps = 8/162 (4%)
Query 9 PDRPGDPAHDPGRGRRLGIDVGAARIGVACSDPDAILATPVETVRR-----DRSGKHLRR 63
PD PG DPG GRR+G+DVG RIGVA SD DA LA PVETV R D G + R
Sbjct 5 PDTPG--VDDPGNGRRIGLDVGTVRIGVAVSDRDARLAMPVETVDRVTNFGDDDGADVDR 62
Query 64 LAALAAELEAVEVIVGLPRTLADRIGRSAQDAIELAEALARRVSPTPVRLADERLTTVSA 123
L L AVEV+VGLPR L +S + A ++A L R PVR+ DERLTTV+A
Sbjct 63 LVELIGFYGAVEVVVGLPRDLKGNGSKSVKHAEDIAARLRARCG-VPVRMGDERLTTVAA 121
Query 124 QRSLRQAGVRASEQRAVIDQAAAVAILQSWLDERLAAMAGTQ 165
+LR +GV A R VIDQAAAV ILQSWLD RL + T
Sbjct 122 THALRASGVSAKAGRKVIDQAAAVEILQSWLDGRLTTLKETH 163
Lambda K H
0.317 0.132 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 133465142006
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40