BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2559c Length=452 Score E Sequences producing significant alignments: (Bits) Value gi|15609696|ref|NP_217075.1| recombination factor protein RarA [... 885 0.0 gi|31793742|ref|NP_856235.1| recombination factor protein RarA [... 883 0.0 gi|342858622|ref|ZP_08715277.1| recombination factor protein Rar... 757 0.0 gi|41407170|ref|NP_960006.1| recombination factor protein RarA [... 755 0.0 gi|254821817|ref|ZP_05226818.1| recombination factor protein Rar... 749 0.0 gi|240170720|ref|ZP_04749379.1| recombination factor protein Rar... 748 0.0 gi|296170787|ref|ZP_06852359.1| AAA family ATPase [Mycobacterium... 747 0.0 gi|118466446|ref|YP_882617.1| recombination factor protein RarA ... 744 0.0 gi|15827173|ref|NP_301436.1| recombination factor protein RarA [... 740 0.0 gi|3136020|emb|CAA19102.1| hypothetical protein MLCB1259.27 [Myc... 737 0.0 gi|118473523|ref|YP_887339.1| recombination factor protein RarA ... 711 0.0 gi|118617371|ref|YP_905703.1| recombination factor protein RarA ... 703 0.0 gi|183982180|ref|YP_001850471.1| hypothetical protein MMAR_2167 ... 702 0.0 gi|120403620|ref|YP_953449.1| recombination factor protein RarA ... 693 0.0 gi|315444680|ref|YP_004077559.1| recombination protein MgsA [Myc... 686 0.0 gi|145224348|ref|YP_001135026.1| recombination factor protein Ra... 686 0.0 gi|333990987|ref|YP_004523601.1| recombination factor protein Ra... 684 0.0 gi|169629937|ref|YP_001703586.1| hypothetical protein MAB_2853c ... 682 0.0 gi|108799292|ref|YP_639489.1| recombination factor protein RarA ... 679 0.0 gi|126434949|ref|YP_001070640.1| recombination factor protein Ra... 679 0.0 gi|254775881|ref|ZP_05217397.1| recombination factor protein Rar... 657 0.0 gi|54025615|ref|YP_119857.1| recombination factor protein RarA [... 631 7e-179 gi|326382142|ref|ZP_08203834.1| recombination factor protein Rar... 622 3e-176 gi|333919508|ref|YP_004493089.1| Recombination protein MgsA [Amy... 601 7e-170 gi|325672565|ref|ZP_08152261.1| AAA family ATPase [Rhodococcus e... 601 1e-169 gi|312139551|ref|YP_004006887.1| ATPase AAA [Rhodococcus equi 10... 600 2e-169 gi|296139682|ref|YP_003646925.1| ATPase AAA [Tsukamurella paurom... 597 1e-168 gi|343924309|ref|ZP_08763860.1| putative AAA family ATPase [Gord... 591 9e-167 gi|111024084|ref|YP_707056.1| recombination factor protein RarA ... 589 4e-166 gi|226366324|ref|YP_002784107.1| recombination factor protein Ra... 588 7e-166 gi|68536116|ref|YP_250821.1| recombination factor protein RarA [... 582 4e-164 gi|308276523|gb|ADO26422.1| Replication-associated recombination... 582 5e-164 gi|300858568|ref|YP_003783551.1| hypothetical protein cpfrc_0115... 582 5e-164 gi|334696986|gb|AEG81783.1| hypothetical protein CULC809_01251 [... 581 7e-164 gi|337290872|ref|YP_004629893.1| hypothetical protein CULC22_012... 581 8e-164 gi|256379279|ref|YP_003102939.1| recombination factor protein Ra... 578 8e-163 gi|262202249|ref|YP_003273457.1| ATPase AAA [Gordonia bronchiali... 574 9e-162 gi|226306471|ref|YP_002766431.1| ATPase [Rhodococcus erythropoli... 571 8e-161 gi|229493645|ref|ZP_04387430.1| recombination factor protein Rar... 570 2e-160 gi|38233937|ref|NP_939704.1| recombination factor protein RarA [... 565 7e-159 gi|172040631|ref|YP_001800345.1| recombination factor protein Ra... 564 9e-159 gi|260578811|ref|ZP_05846718.1| AAA family ATPase [Corynebacteri... 563 3e-158 gi|225021329|ref|ZP_03710521.1| hypothetical protein CORMATOL_01... 560 2e-157 gi|237785603|ref|YP_002906308.1| hypothetical protein ckrop_1012... 559 3e-157 gi|305681055|ref|ZP_07403862.1| recombination factor protein Rar... 553 2e-155 gi|300784614|ref|YP_003764905.1| ATPase [Amycolatopsis mediterra... 553 2e-155 gi|331697349|ref|YP_004333588.1| AAA ATPase central domain-conta... 551 6e-155 gi|134098618|ref|YP_001104279.1| recombination factor protein Ra... 548 6e-154 gi|296394109|ref|YP_003658993.1| ATPase AAA [Segniliparus rotund... 548 9e-154 gi|340794485|ref|YP_004759948.1| hypothetical protein CVAR_1522 ... 546 4e-153 >gi|15609696|ref|NP_217075.1| recombination factor protein RarA [Mycobacterium tuberculosis H37Rv] gi|15842097|ref|NP_337134.1| recombination factor protein RarA [Mycobacterium tuberculosis CDC1551] gi|148662398|ref|YP_001283921.1| recombination factor protein RarA [Mycobacterium tuberculosis H37Ra] 56 more sequence titles Length=452 Score = 885 bits (2288), Expect = 0.0, Method: Compositional matrix adjust. Identities = 452/452 (100%), Positives = 452/452 (100%), Gaps = 0/452 (0%) Query 1 MPEAVSDGLFDVPGVPMTSGHDLGASAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLV 60 MPEAVSDGLFDVPGVPMTSGHDLGASAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLV Sbjct 1 MPEAVSDGLFDVPGVPMTSGHDLGASAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLV 60 Query 61 EGSGVASVILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKEVRAVIENSRKALLHG 120 EGSGVASVILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKEVRAVIENSRKALLHG Sbjct 61 EGSGVASVILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKEVRAVIENSRKALLHG 120 Query 121 EQTVLFIDEVHRFSKTQQDALLSAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRPL 180 EQTVLFIDEVHRFSKTQQDALLSAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRPL Sbjct 121 EQTVLFIDEVHRFSKTQQDALLSAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRPL 180 Query 181 TAEDTRAVVQRAIDDPRGLGRAVAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQAAGE 240 TAEDTRAVVQRAIDDPRGLGRAVAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQAAGE Sbjct 181 TAEDTRAVVQRAIDDPRGLGRAVAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQAAGE 240 Query 241 LVSVQTIERSVDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRF 300 LVSVQTIERSVDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRF Sbjct 241 LVSVQTIERSVDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRF 300 Query 301 IARRLMILASEDIGMAGPSALQVAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVT 360 IARRLMILASEDIGMAGPSALQVAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVT Sbjct 301 IARRLMILASEDIGMAGPSALQVAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVT 360 Query 361 TALAAAMNDIKAGKAGLVPAHLRDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELV 420 TALAAAMNDIKAGKAGLVPAHLRDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELV Sbjct 361 TALAAAMNDIKAGKAGLVPAHLRDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELV 420 Query 421 DVDYYRPTGRGGEREIAGRLDRLRAIIRKKRG 452 DVDYYRPTGRGGEREIAGRLDRLRAIIRKKRG Sbjct 421 DVDYYRPTGRGGEREIAGRLDRLRAIIRKKRG 452 >gi|31793742|ref|NP_856235.1| recombination factor protein RarA [Mycobacterium bovis AF2122/97] gi|121638444|ref|YP_978668.1| recombination factor protein RarA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224990938|ref|YP_002645625.1| recombination factor protein [Mycobacterium bovis BCG str. Tokyo 172] 20 more sequence titles Length=452 Score = 883 bits (2281), Expect = 0.0, Method: Compositional matrix adjust. Identities = 451/452 (99%), Positives = 451/452 (99%), Gaps = 0/452 (0%) Query 1 MPEAVSDGLFDVPGVPMTSGHDLGASAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLV 60 MPEAVSDGLFDVPGVPMTSGHDLGASAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLV Sbjct 1 MPEAVSDGLFDVPGVPMTSGHDLGASAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLV 60 Query 61 EGSGVASVILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKEVRAVIENSRKALLHG 120 EGSGVASVILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKEVRAVIENSRKALLHG Sbjct 61 EGSGVASVILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKEVRAVIENSRKALLHG 120 Query 121 EQTVLFIDEVHRFSKTQQDALLSAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRPL 180 EQTVLFIDEVHRFSKTQQDALLSAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRPL Sbjct 121 EQTVLFIDEVHRFSKTQQDALLSAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRPL 180 Query 181 TAEDTRAVVQRAIDDPRGLGRAVAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQAAGE 240 TAEDTRAVVQRAIDDPRGLGRAVAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQAAGE Sbjct 181 TAEDTRAVVQRAIDDPRGLGRAVAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQAAGE 240 Query 241 LVSVQTIERSVDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRF 300 LVSVQTIERSVDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRF Sbjct 241 LVSVQTIERSVDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRF 300 Query 301 IARRLMILASEDIGMAGPSALQVAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVT 360 IARRLMILASEDIGMA PSALQVAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVT Sbjct 301 IARRLMILASEDIGMADPSALQVAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVT 360 Query 361 TALAAAMNDIKAGKAGLVPAHLRDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELV 420 TALAAAMNDIKAGKAGLVPAHLRDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELV Sbjct 361 TALAAAMNDIKAGKAGLVPAHLRDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELV 420 Query 421 DVDYYRPTGRGGEREIAGRLDRLRAIIRKKRG 452 DVDYYRPTGRGGEREIAGRLDRLRAIIRKKRG Sbjct 421 DVDYYRPTGRGGEREIAGRLDRLRAIIRKKRG 452 >gi|342858622|ref|ZP_08715277.1| recombination factor protein RarA [Mycobacterium colombiense CECT 3035] gi|342134326|gb|EGT87506.1| recombination factor protein RarA [Mycobacterium colombiense CECT 3035] Length=454 Score = 757 bits (1955), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/455 (89%), Positives = 424/455 (94%), Gaps = 4/455 (0%) Query 1 MPEAVSDGLFDVPGVPMTSGHDLGASAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLV 60 MPE VSDGLFD+PG P + H LG S GAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLV Sbjct 1 MPETVSDGLFDLPGAPQPTDHGLGVSGGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLV 60 Query 61 EGSGVASVILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKEVRAVIENSRKALLHG 120 EGSGVAS ILYGPPGSGKTTLAALIS+ATGRRFEALSALSAGVK+VRAVIE +R ALLHG Sbjct 61 EGSGVASAILYGPPGSGKTTLAALISRATGRRFEALSALSAGVKDVRAVIEKARTALLHG 120 Query 121 EQTVLFIDEVHRFSKTQQDALLSAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRPL 180 EQTVLFIDEVHRFSKTQQDALLSAVE+RVVLLVAATTENPSFSVVAPLLSRSLILQLRPL Sbjct 121 EQTVLFIDEVHRFSKTQQDALLSAVENRVVLLVAATTENPSFSVVAPLLSRSLILQLRPL 180 Query 181 TAEDTRAVVQRAIDDPRGLGRAVAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQAA-- 238 + ED RAVVQRAIDDPRGLG +AVAPEAVDLLV+LAAGDARRALTALEVAAE +AA Sbjct 181 SGEDIRAVVQRAIDDPRGLGGQIAVAPEAVDLLVRLAAGDARRALTALEVAAETVRAAEP 240 Query 239 -GELVSVQTIERSVDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGED 297 GEL +V +E+S+D+AAVRYDRDGDQHYDV+SAFIKSVRGSDVDAALHYLARML+AGED Sbjct 241 DGEL-TVAAVEQSLDEAAVRYDRDGDQHYDVISAFIKSVRGSDVDAALHYLARMLIAGED 299 Query 298 PRFIARRLMILASEDIGMAGPSALQVAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSN 357 PRF+ARRLMILASEDIGMA P+ALQVAVAAAQTVALIGMPEAQLTLAH TI+LATAPKSN Sbjct 300 PRFVARRLMILASEDIGMADPNALQVAVAAAQTVALIGMPEAQLTLAHCTIYLATAPKSN 359 Query 358 AVTTALAAAMNDIKAGKAGLVPAHLRDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPD 417 AVTTALAAAM DI+AGKAGLVP HLRDGHYSGAA LGNAQGYKYSHD PDGVVAQQYPPD Sbjct 360 AVTTALAAAMADIRAGKAGLVPPHLRDGHYSGAAGLGNAQGYKYSHDHPDGVVAQQYPPD 419 Query 418 ELVDVDYYRPTGRGGEREIAGRLDRLRAIIRKKRG 452 EL VDYYRPTGRGGERE+AGRLDRLRAIIR+KRG Sbjct 420 ELAGVDYYRPTGRGGEREMAGRLDRLRAIIRRKRG 454 >gi|41407170|ref|NP_960006.1| recombination factor protein RarA [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395521|gb|AAS03389.1| hypothetical protein MAP_1072 [Mycobacterium avium subsp. paratuberculosis K-10] gi|336461499|gb|EGO40367.1| AAA ATPase [Mycobacterium avium subsp. paratuberculosis S397] Length=450 Score = 755 bits (1950), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/452 (89%), Positives = 424/452 (94%), Gaps = 4/452 (0%) Query 1 MPEAVSDGLFDVPGVPMTSGHDLGASAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLV 60 MPEAVSDGLFD+PG P H LG AGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLV Sbjct 1 MPEAVSDGLFDLPGAPPPGDHGLGVPAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLV 60 Query 61 EGSGVASVILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKEVRAVIENSRKALLHG 120 EGSGVAS ILYGPPGSGKTTLAALISQATGRRFEALSALSAGVK+VRAVIE++R ALL G Sbjct 61 EGSGVASAILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKDVRAVIESARTALLRG 120 Query 121 EQTVLFIDEVHRFSKTQQDALLSAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRPL 180 EQTVLFIDEVHRFSKTQQDALLSAVE+RVVLLVAATTENPSFSVVAPLLSRSLILQLRPL Sbjct 121 EQTVLFIDEVHRFSKTQQDALLSAVENRVVLLVAATTENPSFSVVAPLLSRSLILQLRPL 180 Query 181 TAEDTRAVVQRAIDDPRGLGRAVAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQAAGE 240 +A+D R VV+RAIDDPRGLG V VAPEAVDLLV+LAAGDARRALTALEVAAE AGE Sbjct 181 SADDIRTVVRRAIDDPRGLGGRVPVAPEAVDLLVRLAAGDARRALTALEVAAE----AGE 236 Query 241 LVSVQTIERSVDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRF 300 V+VQT+E+S+D+AAVRYDRDGDQHYDV+SAFIKSVRGSDVDAALHYLARMLVAGEDPRF Sbjct 237 SVTVQTVEQSLDEAAVRYDRDGDQHYDVISAFIKSVRGSDVDAALHYLARMLVAGEDPRF 296 Query 301 IARRLMILASEDIGMAGPSALQVAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVT 360 IARRLMILASEDIGMA P+ALQVAVAAAQTVALIGMPEAQLTLAH T++LATAPKSNAVT Sbjct 297 IARRLMILASEDIGMADPAALQVAVAAAQTVALIGMPEAQLTLAHCTVYLATAPKSNAVT 356 Query 361 TALAAAMNDIKAGKAGLVPAHLRDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELV 420 TAL AAM+DIKAGKAGLVPAHLRDGHYSGAAALG+AQGY+YSHD PDGVVAQQYPPDELV Sbjct 357 TALGAAMSDIKAGKAGLVPAHLRDGHYSGAAALGHAQGYQYSHDHPDGVVAQQYPPDELV 416 Query 421 DVDYYRPTGRGGEREIAGRLDRLRAIIRKKRG 452 VDYYRPTGRG ERE+AGRLDRLRAIIR KRG Sbjct 417 GVDYYRPTGRGAEREMAGRLDRLRAIIRNKRG 448 >gi|254821817|ref|ZP_05226818.1| recombination factor protein RarA [Mycobacterium intracellulare ATCC 13950] Length=454 Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/452 (88%), Positives = 421/452 (94%), Gaps = 1/452 (0%) Query 1 MPEAVSDGLFDVPGVPMTSGHDLGASAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLV 60 MPE+VSDGLFD+PG P H LGAS+G+PLAVRMRPASLDEVVGQDHLLAPGSPLRRLV Sbjct 1 MPESVSDGLFDLPGAPQPDDHGLGASSGSPLAVRMRPASLDEVVGQDHLLAPGSPLRRLV 60 Query 61 EGSGVASVILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKEVRAVIENSRKALLHG 120 EGSGVAS ILYGPPGSGKTTLAALISQATGRRFEALSALSAGVK+VRAVIE +R ALLHG Sbjct 61 EGSGVASAILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKDVRAVIEKARTALLHG 120 Query 121 EQTVLFIDEVHRFSKTQQDALLSAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRPL 180 EQTVLFIDEVHRFSKTQQDALLSAVE+RVVLLVAATTENPSFSVVAPLLSRSLILQLRPL Sbjct 121 EQTVLFIDEVHRFSKTQQDALLSAVENRVVLLVAATTENPSFSVVAPLLSRSLILQLRPL 180 Query 181 TAEDTRAVVQRAIDDPRGLGRAVAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQAAGE 240 +A+D R VVQRAIDDPRGLG VAVAP+AVDLLV+LAAGDARRALTALEVAAEA GE Sbjct 181 SADDIRTVVQRAIDDPRGLGGQVAVAPDAVDLLVRLAAGDARRALTALEVAAEAVPPDGE 240 Query 241 LVSVQTIERSVDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRF 300 L +V IE+S+D+AAVRYDRDGDQHYDV+SAFIKSVRGSDVDAALHYLARMLVAGEDPRF Sbjct 241 L-TVTAIEQSLDEAAVRYDRDGDQHYDVISAFIKSVRGSDVDAALHYLARMLVAGEDPRF 299 Query 301 IARRLMILASEDIGMAGPSALQVAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVT 360 +ARRLMILASEDIGMA P+ALQVAVAAAQTVALIGMPEAQLTLAH TIHLATAPKSNAVT Sbjct 300 VARRLMILASEDIGMADPTALQVAVAAAQTVALIGMPEAQLTLAHCTIHLATAPKSNAVT 359 Query 361 TALAAAMNDIKAGKAGLVPAHLRDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELV 420 TAL AAM DI+AGKAGLVP HLRDGHYSGA ALG+AQGYKYSHD PDGV AQQYPPDELV Sbjct 360 TALGAAMADIRAGKAGLVPPHLRDGHYSGAEALGHAQGYKYSHDQPDGVAAQQYPPDELV 419 Query 421 DVDYYRPTGRGGEREIAGRLDRLRAIIRKKRG 452 VDYYRPT RG ER++AGRL+RLRAIIR+KRG Sbjct 420 GVDYYRPTARGFERDMAGRLERLRAIIRRKRG 451 >gi|240170720|ref|ZP_04749379.1| recombination factor protein RarA [Mycobacterium kansasii ATCC 12478] Length=446 Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/448 (88%), Positives = 418/448 (94%), Gaps = 4/448 (0%) Query 5 VSDGLFDVPGVPMTSGHDLGASAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGSG 64 +SDGLFD+PG P + H L SAGAPLAVRMRPASLDEVVGQDHLLA GSPLRRLVEGSG Sbjct 1 MSDGLFDLPGAPKPTDHGLDVSAGAPLAVRMRPASLDEVVGQDHLLAAGSPLRRLVEGSG 60 Query 65 VASVILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKEVRAVIENSRKALLHGEQTV 124 VASVILYGPPGSGKTTLAAL+SQATGRRFEALSALSAGVK+VRAVIE +R+ LL GEQTV Sbjct 61 VASVILYGPPGSGKTTLAALVSQATGRRFEALSALSAGVKDVRAVIEGARRGLLAGEQTV 120 Query 125 LFIDEVHRFSKTQQDALLSAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRPLTAED 184 LFIDEVHRFSKTQQDALLSAVE+RVVLLVAATTENPSF+VVAPLLSRSLILQLRPLT++D Sbjct 121 LFIDEVHRFSKTQQDALLSAVENRVVLLVAATTENPSFAVVAPLLSRSLILQLRPLTSDD 180 Query 185 TRAVVQRAIDDPRGLGRAVAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQAAGELVSV 244 R VVQRAI+DPRG G V V PEAV+LLVQLAAGDARRALTALEVAAE A E V+V Sbjct 181 IRIVVQRAIEDPRGFGGRVVVTPEAVELLVQLAAGDARRALTALEVAAEVA----EQVTV 236 Query 245 QTIERSVDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIARR 304 + IE+S+D+AAVRYDR+GDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIARR Sbjct 237 EAIEQSLDRAAVRYDRNGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIARR 296 Query 305 LMILASEDIGMAGPSALQVAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVTTALA 364 LMILASEDIGMA P+ALQ AVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVTTALA Sbjct 297 LMILASEDIGMADPTALQTAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVTTALA 356 Query 365 AAMNDIKAGKAGLVPAHLRDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELVDVDY 424 AAM DIKAGKAGLVPA LRDGHYSGAAALGNAQGYKYSHD+PDGVVAQQYPPDELV V+Y Sbjct 357 AAMADIKAGKAGLVPAQLRDGHYSGAAALGNAQGYKYSHDNPDGVVAQQYPPDELVGVNY 416 Query 425 YRPTGRGGEREIAGRLDRLRAIIRKKRG 452 YRPTGRGGER++AGRLDRLRAIIRKKRG Sbjct 417 YRPTGRGGERDMAGRLDRLRAIIRKKRG 444 >gi|296170787|ref|ZP_06852359.1| AAA family ATPase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894602|gb|EFG74339.1| AAA family ATPase [Mycobacterium parascrofulaceum ATCC BAA-614] Length=451 Score = 747 bits (1929), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/451 (89%), Positives = 430/451 (96%), Gaps = 0/451 (0%) Query 1 MPEAVSDGLFDVPGVPMTSGHDLGASAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLV 60 MPEAVSDGLFD+PG S H LG SAGAPLAVRMRPASLDEVVGQ+HLLAPGSPLRRLV Sbjct 1 MPEAVSDGLFDLPGAAPASDHGLGVSAGAPLAVRMRPASLDEVVGQEHLLAPGSPLRRLV 60 Query 61 EGSGVASVILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKEVRAVIENSRKALLHG 120 EGSG+ASVILYGPPGSGKTTLAALISQAT RRFEALSALSAGVK+VRAVI+ +R+ALL+G Sbjct 61 EGSGMASVILYGPPGSGKTTLAALISQATARRFEALSALSAGVKDVRAVIDVARRALLNG 120 Query 121 EQTVLFIDEVHRFSKTQQDALLSAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRPL 180 EQTVLFIDEVHRFSKTQQDALLSAVE+RVVLLVAATTENPSFSVVAPLLSRSLILQLRPL Sbjct 121 EQTVLFIDEVHRFSKTQQDALLSAVENRVVLLVAATTENPSFSVVAPLLSRSLILQLRPL 180 Query 181 TAEDTRAVVQRAIDDPRGLGRAVAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQAAGE 240 A+D RAVV+RAIDDPRGLG VAV PEAVDLLV+LAAGDARRALTALEVA+E+AQAA E Sbjct 181 DADDIRAVVRRAIDDPRGLGGRVAVTPEAVDLLVRLAAGDARRALTALEVASESAQAAAE 240 Query 241 LVSVQTIERSVDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRF 300 V+V+TIE+S+DKAAVRYDRDGDQHYDV+SAFIKSVRGSDVDAALHYLARMLVAGEDPRF Sbjct 241 SVTVETIEQSLDKAAVRYDRDGDQHYDVISAFIKSVRGSDVDAALHYLARMLVAGEDPRF 300 Query 301 IARRLMILASEDIGMAGPSALQVAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVT 360 +ARRLMILASEDIGMA PSALQVAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSN+VT Sbjct 301 VARRLMILASEDIGMADPSALQVAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNSVT 360 Query 361 TALAAAMNDIKAGKAGLVPAHLRDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELV 420 TAL AAM+DIKAGKAG+VP HLRDGHYSGAAALG+AQGY+YSH+DPDGVVAQQYPPDELV Sbjct 361 TALGAAMDDIKAGKAGMVPPHLRDGHYSGAAALGHAQGYRYSHNDPDGVVAQQYPPDELV 420 Query 421 DVDYYRPTGRGGEREIAGRLDRLRAIIRKKR 451 VDYYRPTGRG ERE+AGRL+RLRAIIR+KR Sbjct 421 GVDYYRPTGRGAEREMAGRLERLRAIIRRKR 451 >gi|118466446|ref|YP_882617.1| recombination factor protein RarA [Mycobacterium avium 104] gi|118167733|gb|ABK68630.1| ATP/GTP-binding protein [Mycobacterium avium 104] Length=446 Score = 744 bits (1920), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/448 (89%), Positives = 419/448 (94%), Gaps = 4/448 (0%) Query 5 VSDGLFDVPGVPMTSGHDLGASAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGSG 64 +SDGLFD+PG P H LG AGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGSG Sbjct 1 MSDGLFDLPGAPPPGDHGLGVPAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGSG 60 Query 65 VASVILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKEVRAVIENSRKALLHGEQTV 124 VAS ILYGPPGSGKTTLAALISQATGRRFEALSALSAGVK+VRAVIE++R ALL GEQTV Sbjct 61 VASAILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKDVRAVIESARTALLRGEQTV 120 Query 125 LFIDEVHRFSKTQQDALLSAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRPLTAED 184 LFIDEVHRFSKTQQDALLSAVE+RVVLLVAATTENPSFSVVAPLLSRSLILQLRPL+A+D Sbjct 121 LFIDEVHRFSKTQQDALLSAVENRVVLLVAATTENPSFSVVAPLLSRSLILQLRPLSADD 180 Query 185 TRAVVQRAIDDPRGLGRAVAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQAAGELVSV 244 R VV+RAIDDPRGLG V VAPEAVDLLV+LAAGDARRALTALEVAAEA GE V+V Sbjct 181 IRTVVRRAIDDPRGLGGRVPVAPEAVDLLVRLAAGDARRALTALEVAAEA----GESVTV 236 Query 245 QTIERSVDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIARR 304 QT+E+S+D+AAVRYDRDGDQHYDV+SAFIKSVRGSDVDAALHYLARMLVAGEDPRFIARR Sbjct 237 QTVEQSLDEAAVRYDRDGDQHYDVISAFIKSVRGSDVDAALHYLARMLVAGEDPRFIARR 296 Query 305 LMILASEDIGMAGPSALQVAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVTTALA 364 LMILASEDIGMA +ALQVAVAAAQTVALIGMPEAQLTLAH T++LATAPKSNAVTTAL Sbjct 297 LMILASEDIGMADSAALQVAVAAAQTVALIGMPEAQLTLAHCTVYLATAPKSNAVTTALG 356 Query 365 AAMNDIKAGKAGLVPAHLRDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELVDVDY 424 AAM+DIKAGKAGLVPAHLRDGHYSGAAALG+AQGY+YSHD PDGVVAQQYPPDELV VDY Sbjct 357 AAMSDIKAGKAGLVPAHLRDGHYSGAAALGHAQGYQYSHDHPDGVVAQQYPPDELVGVDY 416 Query 425 YRPTGRGGEREIAGRLDRLRAIIRKKRG 452 YRPTGRG EREIAGRLDRLRAIIR KRG Sbjct 417 YRPTGRGAEREIAGRLDRLRAIIRNKRG 444 >gi|15827173|ref|NP_301436.1| recombination factor protein RarA [Mycobacterium leprae TN] gi|221229651|ref|YP_002503067.1| recombination factor protein RarA [Mycobacterium leprae Br4923] gi|13092721|emb|CAC30018.1| conserved hypothetical protein [Mycobacterium leprae] gi|219932758|emb|CAR70603.1| conserved hypothetical protein [Mycobacterium leprae Br4923] Length=473 Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/452 (84%), Positives = 410/452 (91%), Gaps = 1/452 (0%) Query 1 MPEAVSDGLFDVPGVPMTSGHDLGASAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLV 60 + VSD LFD+PG P + + LG S G PLAVRMRPASLDE+VGQ HLLAPGSPLRRLV Sbjct 23 ISNVVSDSLFDLPGAPQPTDYGLGGSTGVPLAVRMRPASLDELVGQGHLLAPGSPLRRLV 82 Query 61 EGSGVASVILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKEVRAVIENSRKALLHG 120 EGSGV S IL+GPPG GKTTLAALISQATG RFEALSALSAGVK+VRAV++ +R ALL G Sbjct 83 EGSGVVSAILHGPPGCGKTTLAALISQATGHRFEALSALSAGVKDVRAVLKIARSALLSG 142 Query 121 EQTVLFIDEVHRFSKTQQDALLSAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRPL 180 ++TVLFIDEVHRFSKTQQDALLSAVE+RVVLLVAATTENPSFSVVAPLLSRSLILQLRPL Sbjct 143 KRTVLFIDEVHRFSKTQQDALLSAVENRVVLLVAATTENPSFSVVAPLLSRSLILQLRPL 202 Query 181 TAEDTRAVVQRAIDDPRGLGRAVAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQAAGE 240 A+D RAVVQRA+DDPRGLG +AVAPEAVDLLV+LAAGDARR LTALEVAAEA Q E Sbjct 203 NADDIRAVVQRAVDDPRGLGGQIAVAPEAVDLLVRLAAGDARRVLTALEVAAEAVQTGDE 262 Query 241 LVSVQTIERSVDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRF 300 L +V TIE+S+D AAVRYDRDGDQHYD+VSAFIKSVRGSDVDAALHYLARML+AGEDPRF Sbjct 263 L-TVATIEQSLDNAAVRYDRDGDQHYDIVSAFIKSVRGSDVDAALHYLARMLIAGEDPRF 321 Query 301 IARRLMILASEDIGMAGPSALQVAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVT 360 IARRL+ILASEDIG+A +AL +AVAAAQTV LIGMPEAQL LAHATIHLATAPKSNAV Sbjct 322 IARRLLILASEDIGLADSTALPLAVAAAQTVQLIGMPEAQLALAHATIHLATAPKSNAVM 381 Query 361 TALAAAMNDIKAGKAGLVPAHLRDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELV 420 TAL +A++DIKAGKAGLVPAHLRDGHYSGAAALGNA+GYKYSHDDPDGVVAQQYPP ELV Sbjct 382 TALGSAIDDIKAGKAGLVPAHLRDGHYSGAAALGNAKGYKYSHDDPDGVVAQQYPPYELV 441 Query 421 DVDYYRPTGRGGEREIAGRLDRLRAIIRKKRG 452 +VDYYRPTGRGGERE+ GRLDRLRAIIR +RG Sbjct 442 EVDYYRPTGRGGERELVGRLDRLRAIIRGRRG 473 >gi|3136020|emb|CAA19102.1| hypothetical protein MLCB1259.27 [Mycobacterium leprae] Length=447 Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/448 (84%), Positives = 409/448 (92%), Gaps = 1/448 (0%) Query 5 VSDGLFDVPGVPMTSGHDLGASAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGSG 64 +SD LFD+PG P + + LG S G PLAVRMRPASLDE+VGQ HLLAPGSPLRRLVEGSG Sbjct 1 MSDSLFDLPGAPQPTDYGLGGSTGVPLAVRMRPASLDELVGQGHLLAPGSPLRRLVEGSG 60 Query 65 VASVILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKEVRAVIENSRKALLHGEQTV 124 V S IL+GPPG GKTTLAALISQATG RFEALSALSAGVK+VRAV++ +R ALL G++TV Sbjct 61 VVSAILHGPPGCGKTTLAALISQATGHRFEALSALSAGVKDVRAVLKIARSALLSGKRTV 120 Query 125 LFIDEVHRFSKTQQDALLSAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRPLTAED 184 LFIDEVHRFSKTQQDALLSAVE+RVVLLVAATTENPSFSVVAPLLSRSLILQLRPL A+D Sbjct 121 LFIDEVHRFSKTQQDALLSAVENRVVLLVAATTENPSFSVVAPLLSRSLILQLRPLNADD 180 Query 185 TRAVVQRAIDDPRGLGRAVAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQAAGELVSV 244 RAVVQRA+DDPRGLG +AVAPEAVDLLV+LAAGDARR LTALEVAAEA Q EL +V Sbjct 181 IRAVVQRAVDDPRGLGGQIAVAPEAVDLLVRLAAGDARRVLTALEVAAEAVQTGDEL-TV 239 Query 245 QTIERSVDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIARR 304 TIE+S+D AAVRYDRDGDQHYD+VSAFIKSVRGSDVDAALHYLARML+AGEDPRFIARR Sbjct 240 ATIEQSLDNAAVRYDRDGDQHYDIVSAFIKSVRGSDVDAALHYLARMLIAGEDPRFIARR 299 Query 305 LMILASEDIGMAGPSALQVAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVTTALA 364 L+ILASEDIG+A +AL +AVAAAQTV LIGMPEAQL LAHATIHLATAPKSNAV TAL Sbjct 300 LLILASEDIGLADSTALPLAVAAAQTVQLIGMPEAQLALAHATIHLATAPKSNAVMTALG 359 Query 365 AAMNDIKAGKAGLVPAHLRDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELVDVDY 424 +A++DIKAGKAGLVPAHLRDGHYSGAAALGNA+GYKYSHDDPDGVVAQQYPP ELV+VDY Sbjct 360 SAIDDIKAGKAGLVPAHLRDGHYSGAAALGNAKGYKYSHDDPDGVVAQQYPPYELVEVDY 419 Query 425 YRPTGRGGEREIAGRLDRLRAIIRKKRG 452 YRPTGRGGERE+ GRLDRLRAIIR +RG Sbjct 420 YRPTGRGGERELVGRLDRLRAIIRGRRG 447 >gi|118473523|ref|YP_887339.1| recombination factor protein RarA [Mycobacterium smegmatis str. MC2 155] gi|118174810|gb|ABK75706.1| AAA ATPase, central region [Mycobacterium smegmatis str. MC2 155] Length=447 Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/451 (82%), Positives = 402/451 (90%), Gaps = 8/451 (1%) Query 5 VSDGLFDVPGVPMTSGHDLGASA----GAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLV 60 +SD LFDVPG SG + A+ +PLAVRMRPA LDEVVGQ HLL GSPLRRLV Sbjct 1 MSDSLFDVPGGGAESGDAIAATGAVGPSSPLAVRMRPAGLDEVVGQSHLLQAGSPLRRLV 60 Query 61 EGSGVASVILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKEVRAVIENSRKALLHG 120 EGSG ASVILYGPPG+GKTTLA+LISQATGRRFEALSAL+AGVKEVRAVI+ +R+A +HG Sbjct 61 EGSGAASVILYGPPGTGKTTLASLISQATGRRFEALSALTAGVKEVRAVIDTARRAAVHG 120 Query 121 EQTVLFIDEVHRFSKTQQDALLSAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRPL 180 +QTVLFIDEVHRFSKTQQDALL+AVE+RVVLLVAATTENPSFSVVAPLLSRSLILQL+PL Sbjct 121 QQTVLFIDEVHRFSKTQQDALLAAVENRVVLLVAATTENPSFSVVAPLLSRSLILQLQPL 180 Query 181 TAEDTRAVVQRAIDDPRGLGRAVAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQAAGE 240 T D AV++RAI D RGLG V V EAVDL+VQL+AGDARRALTALEVAAE GE Sbjct 181 TPADIEAVLRRAITDERGLGGRVEVTDEAVDLIVQLSAGDARRALTALEVAAEP----GE 236 Query 241 LVSVQTIERSVDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRF 300 V+V+TIE+S+DKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRF Sbjct 237 RVTVETIEQSLDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRF 296 Query 301 IARRLMILASEDIGMAGPSALQVAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVT 360 +ARRLMILASEDIGMA P+ALQ AVAAAQTV LIGMPEAQLTLAHAT+HLATAPKSNAVT Sbjct 297 VARRLMILASEDIGMADPTALQTAVAAAQTVQLIGMPEAQLTLAHATVHLATAPKSNAVT 356 Query 361 TALAAAMNDIKAGKAGLVPAHLRDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELV 420 TAL AAMNDI+AGKAGLVP HLRDGHYSGAA LG+A GY+YSHD PDGVVAQQYPPDELV Sbjct 357 TALGAAMNDIRAGKAGLVPPHLRDGHYSGAAKLGHAVGYRYSHDHPDGVVAQQYPPDELV 416 Query 421 DVDYYRPTGRGGEREIAGRLDRLRAIIRKKR 451 VDYY+PTGRG EREI+ RLD+LRAIIR++R Sbjct 417 GVDYYQPTGRGYEREISTRLDKLRAIIRRRR 447 >gi|118617371|ref|YP_905703.1| recombination factor protein RarA [Mycobacterium ulcerans Agy99] gi|118569481|gb|ABL04232.1| conserved alanine, valine and leucine rich protein [Mycobacterium ulcerans Agy99] Length=452 Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/451 (88%), Positives = 416/451 (93%), Gaps = 0/451 (0%) Query 1 MPEAVSDGLFDVPGVPMTSGHDLGASAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLV 60 M E VSDGLFD+PG P S H L SAGAPLAVRMRP SLDEVVGQ HLLAPG+PLRRLV Sbjct 1 MSEPVSDGLFDLPGAPQHSDHALEVSAGAPLAVRMRPESLDEVVGQGHLLAPGAPLRRLV 60 Query 61 EGSGVASVILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKEVRAVIENSRKALLHG 120 EGSGVASVILYGPPGSGKTTLAALIS ATGRRFEALSALSAGVK+VRAVIE +R+ L G Sbjct 61 EGSGVASVILYGPPGSGKTTLAALISHATGRRFEALSALSAGVKDVRAVIETARQVLRRG 120 Query 121 EQTVLFIDEVHRFSKTQQDALLSAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRPL 180 EQTVLFIDEVHRFSKTQQDALLSAVE+RVVLLVAATTENPSFSVVAPLLSRSLILQL PL Sbjct 121 EQTVLFIDEVHRFSKTQQDALLSAVENRVVLLVAATTENPSFSVVAPLLSRSLILQLHPL 180 Query 181 TAEDTRAVVQRAIDDPRGLGRAVAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQAAGE 240 AED RAVVQRA DPRGLG VA+AP+A DLLVQL+AGDARRALTALEVAAEAAQAAG Sbjct 181 GAEDIRAVVQRAAQDPRGLGGRVAIAPDATDLLVQLSAGDARRALTALEVAAEAAQAAGS 240 Query 241 LVSVQTIERSVDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRF 300 VSV+ IE+S+DKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRF Sbjct 241 QVSVEIIEQSLDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRF 300 Query 301 IARRLMILASEDIGMAGPSALQVAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVT 360 +ARRLMILASEDIG+A P+AL AVAAAQTVALIG+PEAQLTLAHATIHLATAPKSNAVT Sbjct 301 VARRLMILASEDIGLADPTALPTAVAAAQTVALIGLPEAQLTLAHATIHLATAPKSNAVT 360 Query 361 TALAAAMNDIKAGKAGLVPAHLRDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELV 420 TALAAAM DIKAGKAGLVP HLRDGHYSGAAALG+AQGYKYSHDDPDGVVAQQYPPDELV Sbjct 361 TALAAAMADIKAGKAGLVPPHLRDGHYSGAAALGHAQGYKYSHDDPDGVVAQQYPPDELV 420 Query 421 DVDYYRPTGRGGEREIAGRLDRLRAIIRKKR 451 +YYRPTGRGGEREI GRL+RLRAIIR+KR Sbjct 421 GTNYYRPTGRGGEREIGGRLERLRAIIRRKR 451 >gi|183982180|ref|YP_001850471.1| hypothetical protein MMAR_2167 [Mycobacterium marinum M] gi|183175506|gb|ACC40616.1| conserved alanine, valine and leucine rich protein [Mycobacterium marinum M] Length=452 Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/451 (88%), Positives = 416/451 (93%), Gaps = 0/451 (0%) Query 1 MPEAVSDGLFDVPGVPMTSGHDLGASAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLV 60 M E VSDGLFD+PG P S H L SAGAPLAVRMRP SLDEVVGQ HLLAPG+PLRRLV Sbjct 1 MSEPVSDGLFDLPGAPQHSDHGLEVSAGAPLAVRMRPESLDEVVGQGHLLAPGAPLRRLV 60 Query 61 EGSGVASVILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKEVRAVIENSRKALLHG 120 EGSGVASVILYGPPGSGKTTLAALIS ATGRRFEALSALSAGVK+VRAVIE +R+ L G Sbjct 61 EGSGVASVILYGPPGSGKTTLAALISHATGRRFEALSALSAGVKDVRAVIETARQVLRRG 120 Query 121 EQTVLFIDEVHRFSKTQQDALLSAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRPL 180 EQTVLFIDEVHRFSKTQQDALLSAVE+RVVLLVAATTENPSFSVVAPLLSRSLILQL PL Sbjct 121 EQTVLFIDEVHRFSKTQQDALLSAVENRVVLLVAATTENPSFSVVAPLLSRSLILQLHPL 180 Query 181 TAEDTRAVVQRAIDDPRGLGRAVAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQAAGE 240 A+D RAVVQRA DPRGLG VA+AP+A DLLVQL+AGDARRALTALEVAAEAAQAAG Sbjct 181 GADDIRAVVQRAAQDPRGLGGRVAIAPDATDLLVQLSAGDARRALTALEVAAEAAQAAGS 240 Query 241 LVSVQTIERSVDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRF 300 VSV+ IE+S+DKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRF Sbjct 241 QVSVEIIEQSLDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRF 300 Query 301 IARRLMILASEDIGMAGPSALQVAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVT 360 +ARRLMILASEDIG+A P+AL AVAAAQTVALIG+PEAQLTLAHATIHLATAPKSNAVT Sbjct 301 VARRLMILASEDIGLADPTALPTAVAAAQTVALIGLPEAQLTLAHATIHLATAPKSNAVT 360 Query 361 TALAAAMNDIKAGKAGLVPAHLRDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELV 420 TALAAAM DIKAGKAGLVP HLRDGHYSGAAALG+AQGYKYSHDDPDGVVAQQYPPDELV Sbjct 361 TALAAAMADIKAGKAGLVPPHLRDGHYSGAAALGHAQGYKYSHDDPDGVVAQQYPPDELV 420 Query 421 DVDYYRPTGRGGEREIAGRLDRLRAIIRKKR 451 +YYRPTGRGGEREI GRL+RLRAIIR+KR Sbjct 421 GTNYYRPTGRGGEREIGGRLERLRAIIRRKR 451 >gi|120403620|ref|YP_953449.1| recombination factor protein RarA [Mycobacterium vanbaalenii PYR-1] gi|119956438|gb|ABM13443.1| Recombination protein MgsA [Mycobacterium vanbaalenii PYR-1] Length=429 Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/427 (83%), Positives = 388/427 (91%), Gaps = 4/427 (0%) Query 25 ASAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGSGVASVILYGPPGSGKTTLAAL 84 A+A +PLAVRMRPASLDEVVGQ HLL P SPLRRL+EGSG ASVILYGPPG+GKTTLA++ Sbjct 7 AAASSPLAVRMRPASLDEVVGQGHLLKPNSPLRRLIEGSGAASVILYGPPGTGKTTLASM 66 Query 85 ISQATGRRFEALSALSAGVKEVRAVIENSRKALLHGEQTVLFIDEVHRFSKTQQDALLSA 144 ISQATGRRFEALSAL+AGVKEVRAVI+ +R+A + GEQTVLFIDEVHRFSKTQQDALL+A Sbjct 67 ISQATGRRFEALSALAAGVKEVRAVIDVARQASMRGEQTVLFIDEVHRFSKTQQDALLAA 126 Query 145 VEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRPLTAEDTRAVVQRAIDDPRGLGRAVA 204 VE+RVVLLVAATTENPSFSVVAPLLSRSLILQL+PLT ED V++RAI+DPRGLG VA Sbjct 127 VENRVVLLVAATTENPSFSVVAPLLSRSLILQLQPLTPEDVTTVIRRAIEDPRGLGGKVA 186 Query 205 VAPEAVDLLVQLAAGDARRALTALEVAAEAAQAAGELVSVQTIERSVDKAAVRYDRDGDQ 264 V EAVD LVQL+AGDARRALTALEVA+E+ GE V+V+ IE+S+DKAAVRYDRDGDQ Sbjct 187 VTDEAVDQLVQLSAGDARRALTALEVASES----GEEVTVEVIEQSLDKAAVRYDRDGDQ 242 Query 265 HYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIARRLMILASEDIGMAGPSALQVA 324 HYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRF+ARRLMILASEDIGMA P+AL A Sbjct 243 HYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFVARRLMILASEDIGMADPTALPTA 302 Query 325 VAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVTTALAAAMNDIKAGKAGLVPAHLRD 384 VAAAQTV LIGMPEAQLTLAHAT+HLATAPKSNAVTTAL AAM DI+AGKAGLVPAHLRD Sbjct 303 VAAAQTVQLIGMPEAQLTLAHATVHLATAPKSNAVTTALGAAMADIRAGKAGLVPAHLRD 362 Query 385 GHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELVDVDYYRPTGRGGEREIAGRLDRLR 444 GHYSGA +GNA GYKY+HD PDGVV QQYPPD+LV VDYYRPT G EREI+ R+D+LR Sbjct 363 GHYSGAQKMGNAVGYKYAHDSPDGVVPQQYPPDDLVGVDYYRPTNHGVEREISTRVDKLR 422 Query 445 AIIRKKR 451 AIIR++R Sbjct 423 AIIRRRR 429 >gi|315444680|ref|YP_004077559.1| recombination protein MgsA [Mycobacterium sp. Spyr1] gi|315262983|gb|ADT99724.1| Recombination protein MgsA [Mycobacterium sp. Spyr1] Length=446 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/448 (79%), Positives = 392/448 (88%), Gaps = 3/448 (0%) Query 5 VSDGLFDVPGVPMT-SGHDLGASAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGS 63 +SD LFDVPG P + +GAS PLAVRMRPA+LDEVVGQDHLL P SPLRRL+EGS Sbjct 1 MSDSLFDVPGEPAPPAAGPVGASV--PLAVRMRPANLDEVVGQDHLLKPNSPLRRLIEGS 58 Query 64 GVASVILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKEVRAVIENSRKALLHGEQT 123 G ASVILYGPPG+GKTTLA++ISQATGRRFEALSAL+AGVKEVRAVI+ +R+A + GEQT Sbjct 59 GAASVILYGPPGTGKTTLASMISQATGRRFEALSALAAGVKEVRAVIDVARQAAVRGEQT 118 Query 124 VLFIDEVHRFSKTQQDALLSAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRPLTAE 183 VLFIDEVHRFSKTQQDALL+AVE+RVVLLVAATTENPSFSVVAPLLSRSLILQL+PLT Sbjct 119 VLFIDEVHRFSKTQQDALLAAVENRVVLLVAATTENPSFSVVAPLLSRSLILQLQPLTPA 178 Query 184 DTRAVVQRAIDDPRGLGRAVAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQAAGELVS 243 D V++RAI D RGLG V V+ +A++ LV L+AGDARRALTALEVA E +GE V+ Sbjct 179 DVTTVIRRAITDERGLGGRVTVSDDAIEQLVLLSAGDARRALTALEVATETVSESGETVT 238 Query 244 VQTIERSVDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIAR 303 V+ IE+S+DKAA+RYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRF+AR Sbjct 239 VEVIEQSLDKAALRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFVAR 298 Query 304 RLMILASEDIGMAGPSALQVAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVTTAL 363 RLMILASEDIGMA P+ALQ+AVAAAQTV LIGMPEAQLTLA AT+HLATAPKSNAVTTAL Sbjct 299 RLMILASEDIGMADPTALQIAVAAAQTVQLIGMPEAQLTLAQATVHLATAPKSNAVTTAL 358 Query 364 AAAMNDIKAGKAGLVPAHLRDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELVDVD 423 AAM DI+AGKAG VPAHLRDGHYSGA LGNA GYKY+HD P GV +QQYPPDELV D Sbjct 359 GAAMADIRAGKAGQVPAHLRDGHYSGAQKLGNAVGYKYAHDHPGGVASQQYPPDELVGTD 418 Query 424 YYRPTGRGGEREIAGRLDRLRAIIRKKR 451 YYRPT G EREI+ R+++LRAIIR+ R Sbjct 419 YYRPTNHGVEREISTRVEKLRAIIRRSR 446 >gi|145224348|ref|YP_001135026.1| recombination factor protein RarA [Mycobacterium gilvum PYR-GCK] gi|145216834|gb|ABP46238.1| Recombination protein MgsA [Mycobacterium gilvum PYR-GCK] Length=446 Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/448 (79%), Positives = 392/448 (88%), Gaps = 3/448 (0%) Query 5 VSDGLFDVPGVPMT-SGHDLGASAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGS 63 +SD LFDVPG P + +GAS PLAVRMRPA+LDEVVGQDHLL P SPLRRL+EGS Sbjct 1 MSDSLFDVPGEPAPPAAGPVGASV--PLAVRMRPANLDEVVGQDHLLKPNSPLRRLIEGS 58 Query 64 GVASVILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKEVRAVIENSRKALLHGEQT 123 G ASVILYGPPG+GKTTLA++ISQATGRRFEALSAL+AGVKEVRAVI+ +R+A + GEQT Sbjct 59 GAASVILYGPPGTGKTTLASMISQATGRRFEALSALAAGVKEVRAVIDVARQAAVRGEQT 118 Query 124 VLFIDEVHRFSKTQQDALLSAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRPLTAE 183 VLFIDEVHRFSKTQQDALL+AVE+RVVLLVAATTENPSFSVVAPLLSRSLILQL+PLT Sbjct 119 VLFIDEVHRFSKTQQDALLAAVENRVVLLVAATTENPSFSVVAPLLSRSLILQLQPLTPA 178 Query 184 DTRAVVQRAIDDPRGLGRAVAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQAAGELVS 243 D V++RAI D RGLG V V+ +A++ LV L+AGDARRALTALEVA E +GE V+ Sbjct 179 DVTTVIRRAITDERGLGGRVTVSDDAIEQLVLLSAGDARRALTALEVATETVSESGETVT 238 Query 244 VQTIERSVDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIAR 303 V+ IE+S+DKAA+RYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRF+AR Sbjct 239 VEVIEQSLDKAALRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFVAR 298 Query 304 RLMILASEDIGMAGPSALQVAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVTTAL 363 RLMILASEDIGMA P+ALQ+AVAAAQTV LIGMPEAQLTLA AT+HLATAPKSNAVTTAL Sbjct 299 RLMILASEDIGMADPTALQIAVAAAQTVQLIGMPEAQLTLAQATVHLATAPKSNAVTTAL 358 Query 364 AAAMNDIKAGKAGLVPAHLRDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELVDVD 423 AAM DI+AGKAG VPAHLRDGHYSGA LGNA GYKY+HD P GV +QQYPPDELV D Sbjct 359 GAAMADIRAGKAGQVPAHLRDGHYSGAQKLGNAVGYKYAHDHPGGVASQQYPPDELVGTD 418 Query 424 YYRPTGRGGEREIAGRLDRLRAIIRKKR 451 YYRPT G EREI+ R+++LRAIIR+ R Sbjct 419 YYRPTNHGVEREISARVEKLRAIIRRSR 446 >gi|333990987|ref|YP_004523601.1| recombination factor protein RarA [Mycobacterium sp. JDM601] gi|333486955|gb|AEF36347.1| recombination factor protein RarA [Mycobacterium sp. JDM601] Length=446 Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/446 (83%), Positives = 393/446 (89%), Gaps = 1/446 (0%) Query 5 VSDGLFDVPGVPMTSGHDLGASAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGSG 64 +SDGLFD+ G P GA PLAVRMRPASLDEVVGQDHLL PGSPLRRLV+GSG Sbjct 1 MSDGLFDLTGAPAPEFSGPGAGTPTPLAVRMRPASLDEVVGQDHLLGPGSPLRRLVDGSG 60 Query 65 VASVILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKEVRAVIENSRKALLHGEQTV 124 ASVILYGPPG+GKTTLA+LIS ATGRRFEALSALSAGVKEVRAVI+ +R+A +GEQTV Sbjct 61 AASVILYGPPGTGKTTLASLISGATGRRFEALSALSAGVKEVRAVIDTARRAAAYGEQTV 120 Query 125 LFIDEVHRFSKTQQDALLSAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRPLTAED 184 LFIDEVHRFSKTQQDALL+AVE+RVVLLVAATTENPSFSVVAPLLSRSLILQLRPL ED Sbjct 121 LFIDEVHRFSKTQQDALLAAVENRVVLLVAATTENPSFSVVAPLLSRSLILQLRPLGPED 180 Query 185 TRAVVQRAIDDPRGLGRAVAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQAAGELVSV 244 AVV RAI D RGLG V VAPEAVDLLV+LAAGDARRALTALEVAAE A G V+V Sbjct 181 IAAVVGRAIADERGLGGRVEVAPEAVDLLVRLAAGDARRALTALEVAAEGV-AEGHQVTV 239 Query 245 QTIERSVDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIARR 304 +T+E S+D+AAVRYDRDGDQHYDV+SAFIKSVRGSDVDAALHYLARML AGEDPRFIARR Sbjct 240 ETVEASLDQAAVRYDRDGDQHYDVISAFIKSVRGSDVDAALHYLARMLTAGEDPRFIARR 299 Query 305 LMILASEDIGMAGPSALQVAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVTTALA 364 LMILASEDIGMA P+AL AVAAAQTVALIGMPEAQLTLAHAT+HLATAPKSNAVTTAL Sbjct 300 LMILASEDIGMADPTALPTAVAAAQTVALIGMPEAQLTLAHATVHLATAPKSNAVTTALG 359 Query 365 AAMNDIKAGKAGLVPAHLRDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELVDVDY 424 AAM DIKAGKAG VPAHLRDGHYSGA ALGNA GY+Y+HD PDGVV QQYPPD+LV DY Sbjct 360 AAMADIKAGKAGAVPAHLRDGHYSGAQALGNAVGYRYAHDHPDGVVPQQYPPDDLVGADY 419 Query 425 YRPTGRGGEREIAGRLDRLRAIIRKK 450 Y+PT RG EREI GRL +LRAIIR++ Sbjct 420 YQPTARGVEREIGGRLQKLRAIIRRR 445 >gi|169629937|ref|YP_001703586.1| hypothetical protein MAB_2853c [Mycobacterium abscessus ATCC 19977] gi|169241904|emb|CAM62932.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=451 Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/447 (80%), Positives = 386/447 (87%), Gaps = 2/447 (0%) Query 5 VSDGLFDVPGVPM-TSGHDLGASAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGS 63 +SD LFDVPG +S D G APLAVRMRPA+LDEVVGQ HLL GSPLRRLV+GS Sbjct 1 MSDSLFDVPGGGFDSSSADPGVPPNAPLAVRMRPATLDEVVGQGHLLKQGSPLRRLVDGS 60 Query 64 GVASVILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKEVRAVIENSRKAL-LHGEQ 122 G ASVILYGPPG+GKTTLA+LIS ATGRRFEALSALSAGVKEVRAVIENSR AL HG+Q Sbjct 61 GAASVILYGPPGTGKTTLASLISGATGRRFEALSALSAGVKEVRAVIENSRTALAYHGQQ 120 Query 123 TVLFIDEVHRFSKTQQDALLSAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRPLTA 182 TVLFIDEVHRFSKTQQDALL+AVE+RVVLLVAATTENPSFSVVAPLLSRSLILQL+PL Sbjct 121 TVLFIDEVHRFSKTQQDALLAAVENRVVLLVAATTENPSFSVVAPLLSRSLILQLQPLAD 180 Query 183 EDTRAVVQRAIDDPRGLGRAVAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQAAGELV 242 D R V+ RAI D RGLG AVAV PEA+ LLVQLAAGDARRALTALEVA E A AG ++ Sbjct 181 NDIREVLTRAIADERGLGGAVAVDPEALSLLVQLAAGDARRALTALEVAFETAGGAGSVI 240 Query 243 SVQTIERSVDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIA 302 SV+ +E+SVD+AAVRYDRDGDQHYDVVSAFIKS+RGSDVDAALHYLARML AGEDPRF+A Sbjct 241 SVEVVEQSVDRAAVRYDRDGDQHYDVVSAFIKSIRGSDVDAALHYLARMLTAGEDPRFVA 300 Query 303 RRLMILASEDIGMAGPSALQVAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVTTA 362 RRLMILASED+GMA P+AL +AVAAAQTV LIGMPEAQLTL HATIHLATAPKS AV A Sbjct 301 RRLMILASEDVGMADPTALPLAVAAAQTVQLIGMPEAQLTLTHATIHLATAPKSGAVPAA 360 Query 363 LAAAMNDIKAGKAGLVPAHLRDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELVDV 422 L AAM DI+ GKAGLVP HLRDGHYSGAA LGNA GY Y H+D DGVVAQQYPPDELV Sbjct 361 LGAAMGDIREGKAGLVPPHLRDGHYSGAAKLGNAVGYVYPHNDRDGVVAQQYPPDELVGA 420 Query 423 DYYRPTGRGGEREIAGRLDRLRAIIRK 449 DYY+PT G EREI RL++LRAI+R+ Sbjct 421 DYYQPTDHGNEREIGSRLEKLRAIVRR 447 >gi|108799292|ref|YP_639489.1| recombination factor protein RarA [Mycobacterium sp. MCS] gi|119868408|ref|YP_938360.1| recombination factor protein RarA [Mycobacterium sp. KMS] gi|108769711|gb|ABG08433.1| Recombination protein MgsA [Mycobacterium sp. MCS] gi|119694497|gb|ABL91570.1| Recombination protein MgsA [Mycobacterium sp. KMS] Length=445 Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/448 (81%), Positives = 396/448 (89%), Gaps = 4/448 (0%) Query 5 VSDGLFDVPGV-PMTSGHDLGASAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGS 63 +SD LFD+P P+ + GA APLAVRMRPASLDEVVGQ HLL P SPLRRLVEGS Sbjct 1 MSDSLFDLPADGPVAAA---GAPVSAPLAVRMRPASLDEVVGQQHLLKPNSPLRRLVEGS 57 Query 64 GVASVILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKEVRAVIENSRKALLHGEQT 123 G ASVILYGPPG+GKTTLA+LIS ATGRRFEALSALSAGVKEVRAVIE +R+ +L G+QT Sbjct 58 GAASVILYGPPGTGKTTLASLISHATGRRFEALSALSAGVKEVRAVIETARQGILRGQQT 117 Query 124 VLFIDEVHRFSKTQQDALLSAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRPLTAE 183 VLFIDEVHRFSKTQQDALL+AVE+R+VLLVAATTENPSFSVVAPLLSRSLILQL+PL + Sbjct 118 VLFIDEVHRFSKTQQDALLAAVENRIVLLVAATTENPSFSVVAPLLSRSLILQLQPLAPD 177 Query 184 DTRAVVQRAIDDPRGLGRAVAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQAAGELVS 243 VV+RA+ DPRGL +V V+ +AVDL+VQL+AGDARRALTALEVAAE+A AA V+ Sbjct 178 SITEVVRRAVADPRGLADSVDVSDDAVDLIVQLSAGDARRALTALEVAAESAAAADGRVT 237 Query 244 VQTIERSVDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIAR 303 V +E+S+DKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIAR Sbjct 238 VDIVEQSLDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIAR 297 Query 304 RLMILASEDIGMAGPSALQVAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVTTAL 363 RLMILASEDIGMA P+AL +AVAAAQTV LIGMPEAQLTLAHAT+HLATA KSNAVTTAL Sbjct 298 RLMILASEDIGMADPTALPLAVAAAQTVQLIGMPEAQLTLAHATVHLATAAKSNAVTTAL 357 Query 364 AAAMNDIKAGKAGLVPAHLRDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELVDVD 423 AAM+D++ GKAG VPAHLRDGHYSGAA LGNA GY Y+HD PDGVV QQYPPDELV VD Sbjct 358 GAAMSDVRNGKAGQVPAHLRDGHYSGAAKLGNAVGYVYAHDHPDGVVPQQYPPDELVGVD 417 Query 424 YYRPTGRGGEREIAGRLDRLRAIIRKKR 451 YYRPTGRG EREI GRLDRLRAIIRK+R Sbjct 418 YYRPTGRGAEREIGGRLDRLRAIIRKRR 445 >gi|126434949|ref|YP_001070640.1| recombination factor protein RarA [Mycobacterium sp. JLS] gi|126234749|gb|ABN98149.1| Recombination protein MgsA [Mycobacterium sp. JLS] Length=445 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/448 (81%), Positives = 396/448 (89%), Gaps = 4/448 (0%) Query 5 VSDGLFDVPGV-PMTSGHDLGASAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGS 63 +SD LFD+P P+ + GA APLAVRMRPASLDEVVGQ HLL P SPLRRLVEGS Sbjct 1 MSDSLFDLPADGPVAAA---GAPVSAPLAVRMRPASLDEVVGQQHLLKPNSPLRRLVEGS 57 Query 64 GVASVILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKEVRAVIENSRKALLHGEQT 123 G ASVILYGPPG+GKTTLA+LIS ATGRRFEALSALSAGVKEVRAVIE +R+ +L G+QT Sbjct 58 GAASVILYGPPGTGKTTLASLISHATGRRFEALSALSAGVKEVRAVIETARQGILRGQQT 117 Query 124 VLFIDEVHRFSKTQQDALLSAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRPLTAE 183 VLFIDEVHRFSKTQQDALL+AVE+R+VLLVAATTENPSFSVVAPLLSRSLILQL+PL + Sbjct 118 VLFIDEVHRFSKTQQDALLAAVENRIVLLVAATTENPSFSVVAPLLSRSLILQLQPLAPD 177 Query 184 DTRAVVQRAIDDPRGLGRAVAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQAAGELVS 243 VV+RA+ DPRGL +V V+ +AVDL+VQL+AGDARRALTALEVAAE+A AA V+ Sbjct 178 SIAEVVRRAVADPRGLADSVDVSDDAVDLIVQLSAGDARRALTALEVAAESAAAADGRVT 237 Query 244 VQTIERSVDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIAR 303 V +E+S+DKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIAR Sbjct 238 VDIVEQSLDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIAR 297 Query 304 RLMILASEDIGMAGPSALQVAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVTTAL 363 RLMILASEDIGMA P+AL +AVAAAQTV LIGMPEAQLTLAHAT+HLATA KSNAVTTAL Sbjct 298 RLMILASEDIGMADPTALPLAVAAAQTVQLIGMPEAQLTLAHATVHLATAAKSNAVTTAL 357 Query 364 AAAMNDIKAGKAGLVPAHLRDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELVDVD 423 AAM+D++ GKAG VPAHLRDGHYSGAA LGNA GY Y+HD PDGVV QQYPPDELV VD Sbjct 358 GAAMSDVRNGKAGQVPAHLRDGHYSGAAKLGNAVGYVYAHDHPDGVVPQQYPPDELVGVD 417 Query 424 YYRPTGRGGEREIAGRLDRLRAIIRKKR 451 YYRPTGRG EREI GRLDRLRAIIRK+R Sbjct 418 YYRPTGRGAEREIGGRLDRLRAIIRKRR 445 >gi|254775881|ref|ZP_05217397.1| recombination factor protein RarA [Mycobacterium avium subsp. avium ATCC 25291] Length=391 Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/393 (90%), Positives = 372/393 (95%), Gaps = 4/393 (1%) Query 60 VEGSGVASVILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKEVRAVIENSRKALLH 119 +EGSGVAS ILYGPPGSGKTTLAALISQATGRRFEALSALSAGVK+VRAVIE++R ALL Sbjct 1 MEGSGVASAILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKDVRAVIESARTALLR 60 Query 120 GEQTVLFIDEVHRFSKTQQDALLSAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRP 179 GEQTVLFIDEVHRFSKTQQDALLSAVE+RVVLLVAATTENPSFSVVAPLLSRSLILQLRP Sbjct 61 GEQTVLFIDEVHRFSKTQQDALLSAVENRVVLLVAATTENPSFSVVAPLLSRSLILQLRP 120 Query 180 LTAEDTRAVVQRAIDDPRGLGRAVAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQAAG 239 L+A+D R VV+RAIDDPRGLG V VAPEAVDLLV+LAAGDARRALTALEVAAEA G Sbjct 121 LSADDIRTVVRRAIDDPRGLGGRVPVAPEAVDLLVRLAAGDARRALTALEVAAEA----G 176 Query 240 ELVSVQTIERSVDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPR 299 E V+VQT+E+S+D+AAVRYDRDGDQHYDV+SAFIKSVRGSDVDAALHYLARMLVAGEDPR Sbjct 177 ESVTVQTVEQSLDEAAVRYDRDGDQHYDVISAFIKSVRGSDVDAALHYLARMLVAGEDPR 236 Query 300 FIARRLMILASEDIGMAGPSALQVAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAV 359 FIARRLMILASEDIGMA +ALQVAVAAAQTVALIGMPEAQLTLAH T++LATAPKSNAV Sbjct 237 FIARRLMILASEDIGMADSAALQVAVAAAQTVALIGMPEAQLTLAHCTVYLATAPKSNAV 296 Query 360 TTALAAAMNDIKAGKAGLVPAHLRDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDEL 419 TTAL AAM+DIKAGKAGLVPAHLRDGHYSGAAALG+AQGY+YSHD PDGVVAQQYPPDEL Sbjct 297 TTALGAAMSDIKAGKAGLVPAHLRDGHYSGAAALGHAQGYQYSHDHPDGVVAQQYPPDEL 356 Query 420 VDVDYYRPTGRGGEREIAGRLDRLRAIIRKKRG 452 V VDYYRPTGRG ERE+AGRLDRLRAIIR KRG Sbjct 357 VGVDYYRPTGRGAEREMAGRLDRLRAIIRNKRG 389 >gi|54025615|ref|YP_119857.1| recombination factor protein RarA [Nocardia farcinica IFM 10152] gi|54017123|dbj|BAD58493.1| putative AAA ATPase [Nocardia farcinica IFM 10152] Length=451 Score = 631 bits (1628), Expect = 7e-179, Method: Compositional matrix adjust. Identities = 332/453 (74%), Positives = 371/453 (82%), Gaps = 9/453 (1%) Query 5 VSDGLFDVP-------GVPMTSGHDLGASAGAPLAVRMRPASLDEVVGQDHLLAPGSPLR 57 +SDGLFDVP G+ G APLAVRMRP SL+EVVGQ HLL PGSPLR Sbjct 1 MSDGLFDVPSEAAPDPGIDGAGVDFRGPGDQAPLAVRMRPRSLEEVVGQQHLLGPGSPLR 60 Query 58 RLVEGSGVASVILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKEVRAVIENSRKAL 117 RL+EGSG ASV+L+GPPG+GKTTLA+LISQATGRRFEALSALSAGVKEVRAVI+ +R+ L Sbjct 61 RLIEGSGAASVLLFGPPGTGKTTLASLISQATGRRFEALSALSAGVKEVRAVIDLARRRL 120 Query 118 LHGEQTVLFIDEVHRFSKTQQDALLSAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQL 177 GE+TVLFIDEVHRFSKTQQDALL+AVE+R+VLLV ATTENPSFSVV+PLLSRSL+LQL Sbjct 121 TAGERTVLFIDEVHRFSKTQQDALLAAVENRIVLLVGATTENPSFSVVSPLLSRSLVLQL 180 Query 178 RPLTAEDTRAVVQRAIDDPRGLGRAVAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQA 237 R LT D R V+ RA+ DPRG G A V A+D +V++A GDARRALTALE +AE++ Sbjct 181 RSLTDADIRTVLDRALADPRGFGGAYQVTDAALDHIVRIAGGDARRALTALEASAESSLD 240 Query 238 AGELVSVQTIERSVDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGED 297 +V + +E SVD+AAVRYDR GDQHYDVVSAFIKS+RGSDVDAALHYLARML AGED Sbjct 241 G--VVDLDLVEASVDRAAVRYDRAGDQHYDVVSAFIKSIRGSDVDAALHYLARMLSAGED 298 Query 298 PRFIARRLMILASEDIGMAGPSALQVAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSN 357 PRFIARRL+I ASEDIGMA PSALQ AVAAA V LIGMPEAQLTL HATIHLATAPKS Sbjct 299 PRFIARRLVISASEDIGMADPSALQTAVAAAHVVQLIGMPEAQLTLTHATIHLATAPKSG 358 Query 358 AVTTALAAAMNDIKAGKAGLVPAHLRDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPD 417 AV AL AAM DI AGKAG VP HLRDGHY+GAA LGNAQGYKY HDDPDGV+AQQYPPD Sbjct 359 AVPAALGAAMADISAGKAGAVPPHLRDGHYAGAAKLGNAQGYKYPHDDPDGVLAQQYPPD 418 Query 418 ELVDVDYYRPTGRGGEREIAGRLDRLRAIIRKK 450 ELV DYYRPT G EREI R+++LR I+R + Sbjct 419 ELVGADYYRPTDHGYEREIGTRVEKLRRIVRGR 451 >gi|326382142|ref|ZP_08203834.1| recombination factor protein RarA [Gordonia neofelifaecis NRRL B-59395] gi|326198872|gb|EGD56054.1| recombination factor protein RarA [Gordonia neofelifaecis NRRL B-59395] Length=453 Score = 622 bits (1604), Expect = 3e-176, Method: Compositional matrix adjust. Identities = 318/444 (72%), Positives = 368/444 (83%), Gaps = 1/444 (0%) Query 5 VSDGLFDVPGVPMTSGHDLGASAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGSG 64 ++DGLF G ++ + PLAVRMRP+SLDE+VGQ HLL SPLRRL+ GSG Sbjct 1 MTDGLFAADGESVSDAASVDGKPAPPLAVRMRPSSLDEIVGQQHLLGDRSPLRRLIAGSG 60 Query 65 VASVILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKEVRAVIENSRKALLHGEQTV 124 ASV+LYGPPG+GKTT+A+LISQATG RFEALSALSAGVKEVRAVI+ +R+ L G+QTV Sbjct 61 AASVLLYGPPGTGKTTMASLISQATGGRFEALSALSAGVKEVRAVIDVARRRLAQGQQTV 120 Query 125 LFIDEVHRFSKTQQDALLSAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRPLTAED 184 LFIDEVHRFSKTQQDALL AVE+R+VLLVAATTENPSFSVVAPLLSRSL+LQLR LT ED Sbjct 121 LFIDEVHRFSKTQQDALLDAVENRIVLLVAATTENPSFSVVAPLLSRSLVLQLRSLTEED 180 Query 185 TRAVVQRAIDDPRGLGRAVAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQAAGELVSV 244 AV++RA+ DPRGL AV+++ EA LV +A GDARRALTALE +A+A +A G ++ V Sbjct 181 VEAVLRRAVIDPRGLNGAVSLSDEAARHLVAVAGGDARRALTALEASADATEAGG-VIEV 239 Query 245 QTIERSVDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIARR 304 +E ++D+AAVRYDRDGDQHYDV SAFIKS+RGSDVDAALHYLARM+ AGEDPRFIARR Sbjct 240 ADVEAAIDRAAVRYDRDGDQHYDVTSAFIKSIRGSDVDAALHYLARMISAGEDPRFIARR 299 Query 305 LMILASEDIGMAGPSALQVAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVTTALA 364 LMI ASEDIGMA P ALQ AVAAAQ V ++GMPEAQL L+ ATIHLATAPKS AVT+AL Sbjct 300 LMIHASEDIGMADPMALQTAVAAAQVVQMVGMPEAQLALSQATIHLATAPKSGAVTSALG 359 Query 365 AAMNDIKAGKAGLVPAHLRDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELVDVDY 424 AM D+ AGKAG VPAHLRDGHY+GA LGNA GY++ HDDPDGV+AQQY PDELV VDY Sbjct 360 KAMTDVAAGKAGNVPAHLRDGHYAGAKKLGNAVGYRFPHDDPDGVLAQQYAPDELVGVDY 419 Query 425 YRPTGRGGEREIAGRLDRLRAIIR 448 Y PT G ERE+A R+ RLR+I+R Sbjct 420 YEPTDHGFERELAPRVGRLRSIVR 443 >gi|333919508|ref|YP_004493089.1| Recombination protein MgsA [Amycolicicoccus subflavus DQS3-9A1] gi|333481729|gb|AEF40289.1| Recombination protein MgsA [Amycolicicoccus subflavus DQS3-9A1] Length=461 Score = 601 bits (1550), Expect = 7e-170, Method: Compositional matrix adjust. Identities = 330/461 (72%), Positives = 372/461 (81%), Gaps = 11/461 (2%) Query 1 MPEAVSDGLFDVPGVPMTSGH--DLGASAGA--PLAVRMRPASLDEVVGQDHLLAPGSPL 56 M E + D LF VP + G S GA PLAVRMRP SLDEVVGQ+HLLA SPL Sbjct 1 MSEELDDVLFSTASVPGRTEQRGPAGTSRGALRPLAVRMRPESLDEVVGQEHLLAHASPL 60 Query 57 RRLVEGSGVASVILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKEVRAVIENSRKA 116 RRL+EGSG ASVILYGPPG+GKTT+A+LISQATGRRFEALSALSAGVK+VRAVI+ +R+ Sbjct 61 RRLIEGSGAASVILYGPPGTGKTTMASLISQATGRRFEALSALSAGVKDVRAVIDLARRR 120 Query 117 LLHGEQTVLFIDEVHRFSKTQQDALLSAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQ 176 L++GEQTVLFIDEVHRFS+TQQDALLSAVE R VLLVAATTENPSFSVVAPLLSRSLILQ Sbjct 121 LVNGEQTVLFIDEVHRFSRTQQDALLSAVEDRTVLLVAATTENPSFSVVAPLLSRSLILQ 180 Query 177 LRPLTAEDTRAVVQRAIDDPRGLGRAVAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQ 236 L+PL A ++ RA+ D RGL V + EA D L+ L+AGDARR LTALE AAE+A Sbjct 181 LKPLDAPAIGTLIDRAVSDSRGLAGQVRLTAEARDHLIALSAGDARRGLTALEAAAESAV 240 Query 237 A-------AGELVSVQTIERSVDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLA 289 A A V ++T+E SVD+AAVRYDRDGDQHYDV+SAFIKS+RGSDVDAALHYLA Sbjct 241 ARNPDTASAPVAVGLETVEASVDRAAVRYDRDGDQHYDVISAFIKSIRGSDVDAALHYLA 300 Query 290 RMLVAGEDPRFIARRLMILASEDIGMAGPSALQVAVAAAQTVALIGMPEAQLTLAHATIH 349 RM+ AGEDPRFIARRL++ ASEDIGMA PSALQ A AAAQ V LIGMPEA LTLAHATIH Sbjct 301 RMITAGEDPRFIARRLVVHASEDIGMADPSALQTAAAAAQAVQLIGMPEAGLTLAHATIH 360 Query 350 LATAPKSNAVTTALAAAMNDIKAGKAGLVPAHLRDGHYSGAAALGNAQGYKYSHDDPDGV 409 LATAPKSN V AL AAM D+ AGKAG VPAHLRDGHYSGA++LG+A GY+Y HD +GV Sbjct 361 LATAPKSNGVVAALNAAMKDVAAGKAGPVPAHLRDGHYSGASSLGSAVGYRYPHDVVEGV 420 Query 410 VAQQYPPDELVDVDYYRPTGRGGEREIAGRLDRLRAIIRKK 450 + QQYPPDELV VDYYRP GRG ER++ R+ +LR IIR K Sbjct 421 LPQQYPPDELVGVDYYRPAGRGTERDLVVRVSKLRKIIRGK 461 >gi|325672565|ref|ZP_08152261.1| AAA family ATPase [Rhodococcus equi ATCC 33707] gi|325556442|gb|EGD26108.1| AAA family ATPase [Rhodococcus equi ATCC 33707] Length=468 Score = 601 bits (1549), Expect = 1e-169, Method: Compositional matrix adjust. Identities = 321/427 (76%), Positives = 365/427 (86%), Gaps = 4/427 (0%) Query 28 GAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGSGVASVILYGPPGSGKTTLAALISQ 87 GAPLAVRMRPA+L EVVGQ HLLAPG+PLRRLVEGSG +SV+LYGPPG+GKTTLA+LIS Sbjct 42 GAPLAVRMRPAALSEVVGQQHLLAPGAPLRRLVEGSGASSVLLYGPPGTGKTTLASLISG 101 Query 88 ATGRRFEALSALSAGVKEVRAVIENSRKALLHGEQTVLFIDEVHRFSKTQQDALLSAVEH 147 ATGR+FEALSALSAGVKEVR VIE +R+ LL GEQTVLFIDEVHRFSKTQQDALL+AVE+ Sbjct 102 ATGRKFEALSALSAGVKEVRGVIELARRRLLQGEQTVLFIDEVHRFSKTQQDALLAAVEN 161 Query 148 RVVLLVAATTENPSFSVVAPLLSRSLILQLRPLTAEDTRAVVQRAIDDPRGLGRAVAVAP 207 R+VLLVAATTENPSFSVV+PLLSRSL+LQL+ LT++D R V++RA D RGLG AV +A Sbjct 162 RIVLLVAATTENPSFSVVSPLLSRSLVLQLQSLTSDDIRLVIERARADERGLGGAVEIAD 221 Query 208 EAVDLLVQLAAGDARRALTALEVAAEAAQAAGE----LVSVQTIERSVDKAAVRYDRDGD 263 +A++ LV+LAAGDARRALTALE AA A + L+ ++T+E SVDKAAVRYDRDGD Sbjct 222 DALEHLVRLAAGDARRALTALEAAAGTALDRTDERPALLDLETVESSVDKAAVRYDRDGD 281 Query 264 QHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIARRLMILASEDIGMAGPSALQV 323 QHYDV+SAFIKS+RGSDVDAALHYLARM+ AGEDPRFIARRL++ ASEDIGMA P+ALQ Sbjct 282 QHYDVISAFIKSIRGSDVDAALHYLARMITAGEDPRFIARRLVVHASEDIGMADPTALQT 341 Query 324 AVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVTTALAAAMNDIKAGKAGLVPAHLR 383 A AAAQ V LIGMPEA+L LA ATIHLATAPKS AV AL AAM D+ AGKAGLVP HLR Sbjct 342 ATAAAQAVQLIGMPEARLALAQATIHLATAPKSGAVIAALGAAMADVAAGKAGLVPPHLR 401 Query 384 DGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELVDVDYYRPTGRGGEREIAGRLDRL 443 DGHY+GAA LGNA GYKY HD DGV+ QQYPPDELV VDYY PT G EREI+ R+ +L Sbjct 402 DGHYAGAAQLGNAVGYKYPHDHADGVLPQQYPPDELVGVDYYEPTTHGAEREISARVGKL 461 Query 444 RAIIRKK 450 R I+R + Sbjct 462 RRIVRGR 468 >gi|312139551|ref|YP_004006887.1| ATPase AAA [Rhodococcus equi 103S] gi|311888890|emb|CBH48203.1| putative AAA ATPase [Rhodococcus equi 103S] Length=468 Score = 600 bits (1547), Expect = 2e-169, Method: Compositional matrix adjust. Identities = 320/427 (75%), Positives = 365/427 (86%), Gaps = 4/427 (0%) Query 28 GAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGSGVASVILYGPPGSGKTTLAALISQ 87 GAPLAVRMRPA+L EVVGQ HLLAPG+PLRRLVEGSG +SV+LYGPPG+GKTTLA+LIS Sbjct 42 GAPLAVRMRPAALSEVVGQQHLLAPGAPLRRLVEGSGASSVLLYGPPGTGKTTLASLISG 101 Query 88 ATGRRFEALSALSAGVKEVRAVIENSRKALLHGEQTVLFIDEVHRFSKTQQDALLSAVEH 147 ATGR+FEALSALSAGVKEVR VIE +R+ LL GEQTVLFIDEVHRFSKTQQDALL+AVE+ Sbjct 102 ATGRKFEALSALSAGVKEVRGVIELARRRLLQGEQTVLFIDEVHRFSKTQQDALLAAVEN 161 Query 148 RVVLLVAATTENPSFSVVAPLLSRSLILQLRPLTAEDTRAVVQRAIDDPRGLGRAVAVAP 207 R+VLLVAATTENPSFSVV+PLLSRSL+LQL+ LT++D R V++RA D RGLG +V +A Sbjct 162 RIVLLVAATTENPSFSVVSPLLSRSLVLQLQSLTSDDIRLVIERARADERGLGGSVEIAD 221 Query 208 EAVDLLVQLAAGDARRALTALEVAAEAAQAAGE----LVSVQTIERSVDKAAVRYDRDGD 263 +A++ LV+LAAGDARRALTALE AA A + L+ ++T+E SVDKAAVRYDRDGD Sbjct 222 DALEHLVRLAAGDARRALTALEAAAGTALDRTDERPALLDLETVESSVDKAAVRYDRDGD 281 Query 264 QHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIARRLMILASEDIGMAGPSALQV 323 QHYDV+SAFIKS+RGSDVDAALHYLARM+ AGEDPRFIARRL++ ASEDIGMA P+ALQ Sbjct 282 QHYDVISAFIKSIRGSDVDAALHYLARMITAGEDPRFIARRLVVHASEDIGMADPTALQT 341 Query 324 AVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVTTALAAAMNDIKAGKAGLVPAHLR 383 A AAAQ V LIGMPEA+L LA ATIHLATAPKS AV AL AAM D+ AGKAGLVP HLR Sbjct 342 ATAAAQAVQLIGMPEARLALAQATIHLATAPKSGAVIAALGAAMADVAAGKAGLVPPHLR 401 Query 384 DGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELVDVDYYRPTGRGGEREIAGRLDRL 443 DGHY+GAA LGNA GYKY HD DGV+ QQYPPDELV VDYY PT G EREI+ R+ +L Sbjct 402 DGHYAGAAQLGNAVGYKYPHDHADGVLPQQYPPDELVGVDYYEPTTHGAEREISARVGKL 461 Query 444 RAIIRKK 450 R I+R + Sbjct 462 RRIVRGR 468 >gi|296139682|ref|YP_003646925.1| ATPase AAA [Tsukamurella paurometabola DSM 20162] gi|296027816|gb|ADG78586.1| AAA ATPase central domain protein [Tsukamurella paurometabola DSM 20162] Length=456 Score = 597 bits (1539), Expect = 1e-168, Method: Compositional matrix adjust. Identities = 314/445 (71%), Positives = 358/445 (81%), Gaps = 9/445 (2%) Query 14 GVPMTSGHDLG------ASAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGSGVAS 67 G P T+ + G A AG PLAVRMRP SLDEV+GQ+HLL PG+PLRRL+EG+G AS Sbjct 13 GTPRTTPSNAGEVDFVPAHAGTPLAVRMRPRSLDEVLGQEHLLGPGTPLRRLIEGAGAAS 72 Query 68 VILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKEVRAVIENSRKALLHGEQTVLFI 127 VILYGPPG+GKTT+A+LIS ATGRRFEALSALSAGVK+VRAVIE +R+ LL EQTVLFI Sbjct 73 VILYGPPGTGKTTIASLISGATGRRFEALSALSAGVKDVRAVIEMARRRLLVDEQTVLFI 132 Query 128 DEVHRFSKTQQDALLSAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRPLTAEDTRA 187 DEVHRFSK QQDALL+AVE+RVVLLVAATTENPSFSVV+PLLSRSLILQLRPL Sbjct 133 DEVHRFSKAQQDALLAAVENRVVLLVAATTENPSFSVVSPLLSRSLILQLRPLEPGHISE 192 Query 188 VVQRAIDDPRGLGRAVAVAPEAVDLLVQLAAGDARRALTALEVAAEAA--QAAGELVSVQ 245 ++ RA+ DPRG A+ + EA D LV+LA GDARR+LTALE AA+ A + A E + + Sbjct 193 LIDRALTDPRGYDGALTITDEARDHLVRLAGGDARRSLTALEAAADVAMGEQAAE-IDLD 251 Query 246 TIERSVDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIARRL 305 +E S+D AAVRYDRDGDQHYDV+SAFIKS+RGSDVDAALHYLARM+ AGEDPRFIARRL Sbjct 252 IVESSIDTAAVRYDRDGDQHYDVISAFIKSIRGSDVDAALHYLARMITAGEDPRFIARRL 311 Query 306 MILASEDIGMAGPSALQVAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVTTALAA 365 ++ ASEDIGMA P AL +A AAAQ V LIGMPEA+L LA ATIHLATAPKS+ V +A+ A Sbjct 312 VVHASEDIGMADPQALLIATAAAQAVQLIGMPEARLALAQATIHLATAPKSDGVVSAIGA 371 Query 366 AMNDIKAGKAGLVPAHLRDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELVDVDYY 425 AM D+ AGKAG VP HLRDGHY+GA ALGNAQGY Y H GV QQYPPDELV VDYY Sbjct 372 AMGDVSAGKAGAVPPHLRDGHYAGAEALGNAQGYVYPHAVAGGVAPQQYPPDELVGVDYY 431 Query 426 RPTGRGGEREIAGRLDRLRAIIRKK 450 PT G EREI R+ RLR IIR++ Sbjct 432 EPTDHGFEREIGPRVTRLRGIIRRR 456 >gi|343924309|ref|ZP_08763860.1| putative AAA family ATPase [Gordonia alkanivorans NBRC 16433] gi|343765743|dbj|GAA10786.1| putative AAA family ATPase [Gordonia alkanivorans NBRC 16433] Length=457 Score = 591 bits (1523), Expect = 9e-167, Method: Compositional matrix adjust. Identities = 312/451 (70%), Positives = 358/451 (80%), Gaps = 13/451 (2%) Query 7 DGLFDVP-------GVPMTSGHDLGASAG--APLAVRMRPASLDEVVGQDHLLAPGSPLR 57 DGLFD P G P L A+ APLAVRMRP +LDE+VGQ HLL GSPLR Sbjct 2 DGLFDPPVDPRAGAGGPTPGADGLTAAPKPTAPLAVRMRPQTLDEIVGQQHLLGDGSPLR 61 Query 58 RLVEGSGVASVILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKEVRAVIENSRKAL 117 RL+ G G ASV+LYGPPG+GKTT+A+LI++ATG RFEALSALSAGVKEVRAVI+ +R+ L Sbjct 62 RLISGVGAASVLLYGPPGTGKTTMASLIARATGGRFEALSALSAGVKEVRAVIDVARRRL 121 Query 118 LHGEQTVLFIDEVHRFSKTQQDALLSAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQL 177 + G+QTVLFIDEVHRFSKTQQDALL AVE+R+VLLVAATTENPSFSVVAPLLSRSL+LQL Sbjct 122 IDGQQTVLFIDEVHRFSKTQQDALLDAVENRIVLLVAATTENPSFSVVAPLLSRSLVLQL 181 Query 178 RPLTAEDTRAVVQRAIDDPRGLGRAVAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQA 237 R LT +D R V+ RA+ DPRGL V V A D LV +A GDARRALTALE +A++A Sbjct 182 RSLTDDDIREVLTRAVADPRGLDGQVEVTEAAYDHLVAVAGGDARRALTALEASADSATH 241 Query 238 AGELVSVQTIERSVDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGED 297 V + +E ++D+AAVRYDRDGDQHYDV SAFIKS+RGSDVDAA+HYLARM+ AGED Sbjct 242 ----VDLADVETAIDRAAVRYDRDGDQHYDVTSAFIKSIRGSDVDAAVHYLARMIAAGED 297 Query 298 PRFIARRLMILASEDIGMAGPSALQVAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSN 357 PRFIARRLMI ASEDIGMA P+ALQ AVAAAQ V L+GMPEA+L L ATIHLATAPKS Sbjct 298 PRFIARRLMIHASEDIGMADPTALQTAVAAAQVVNLVGMPEAKLALTQATIHLATAPKSA 357 Query 358 AVTTALAAAMNDIKAGKAGLVPAHLRDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPD 417 V +A+ AA+ D++AGKA VPAHLRD HY+GA LGNA Y+Y HD PDGVV QQYPPD Sbjct 358 GVVSAIGAALADVEAGKARAVPAHLRDSHYAGAKKLGNAVAYRYPHDHPDGVVPQQYPPD 417 Query 418 ELVDVDYYRPTGRGGEREIAGRLDRLRAIIR 448 ELV VDYY PT G EREI R+ RLR+I+R Sbjct 418 ELVGVDYYEPTDHGLEREIGPRVARLRSIVR 448 >gi|111024084|ref|YP_707056.1| recombination factor protein RarA [Rhodococcus jostii RHA1] gi|110823614|gb|ABG98898.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Rhodococcus jostii RHA1] Length=478 Score = 589 bits (1518), Expect = 4e-166, Method: Compositional matrix adjust. Identities = 326/426 (77%), Positives = 367/426 (87%), Gaps = 6/426 (1%) Query 29 APLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGSGVASVILYGPPGSGKTTLAALISQA 88 APLAVRMRP +L EVVGQ HLL PG+PLRRLVEGSG ASV+LYGPPG+GKTTLA+LIS A Sbjct 43 APLAVRMRPRTLGEVVGQQHLLGPGAPLRRLVEGSGAASVLLYGPPGTGKTTLASLISGA 102 Query 89 TGRRFEALSALSAGVKEVRAVIENSRKALLHGEQTVLFIDEVHRFSKTQQDALLSAVEHR 148 TGRRFEALSALSAGVKEVR VIE +R+ LL GEQTVLFIDEVHRFSKTQQDALL+AVE+R Sbjct 103 TGRRFEALSALSAGVKEVRGVIELARRRLLAGEQTVLFIDEVHRFSKTQQDALLAAVENR 162 Query 149 VVLLVAATTENPSFSVVAPLLSRSLILQLRPLTAEDTRAVVQRAIDDPRGLGRAVAVAPE 208 +VLLVAATTENPSFSVV+PLLSRSL+LQL+ LTA+D +++RA D RGLG + +A + Sbjct 163 IVLLVAATTENPSFSVVSPLLSRSLVLQLQSLTADDIENLLERARTDERGLGGEIEIAGD 222 Query 209 AVDLLVQLAAGDARRALTALEVAAEAA-QAAGE-----LVSVQTIERSVDKAAVRYDRDG 262 A+D LV+LAAGDARRALTALE AA AA AG+ L+ + T+E SVDKAAVRYDRDG Sbjct 223 AMDHLVRLAAGDARRALTALEAAAGAALDQAGDTDRPVLLDLATVEASVDKAAVRYDRDG 282 Query 263 DQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIARRLMILASEDIGMAGPSALQ 322 DQHYDV+SAFIKS+RGSDVDAALHYLARML AGEDPRFIARRL++ ASEDIGMA P+ALQ Sbjct 283 DQHYDVISAFIKSIRGSDVDAALHYLARMLTAGEDPRFIARRLVVHASEDIGMADPTALQ 342 Query 323 VAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVTTALAAAMNDIKAGKAGLVPAHL 382 A AAAQ V LIGMPEA+L LA ATIHLATAPKS AV AL AAM D+ AG AGLVP HL Sbjct 343 TATAAAQAVQLIGMPEARLALAQATIHLATAPKSGAVIAALGAAMADVAAGNAGLVPPHL 402 Query 383 RDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELVDVDYYRPTGRGGEREIAGRLDR 442 RDGHY+GAA LGNA GY+Y HD PDGV+AQQYPPDELV VDYY+PT GGER+IAGR+D+ Sbjct 403 RDGHYAGAAKLGNAVGYRYPHDHPDGVLAQQYPPDELVGVDYYQPTTHGGERDIAGRVDK 462 Query 443 LRAIIR 448 LRAI+R Sbjct 463 LRAIVR 468 >gi|226366324|ref|YP_002784107.1| recombination factor protein RarA [Rhodococcus opacus B4] gi|226244814|dbj|BAH55162.1| putative AAA family ATPase [Rhodococcus opacus B4] Length=477 Score = 588 bits (1516), Expect = 7e-166, Method: Compositional matrix adjust. Identities = 326/426 (77%), Positives = 367/426 (87%), Gaps = 6/426 (1%) Query 29 APLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGSGVASVILYGPPGSGKTTLAALISQA 88 APLAVRMRP +L EVVGQ HLL PG+PLRRLVEGSG ASV+LYGPPG+GKTTLA+LIS A Sbjct 42 APLAVRMRPRTLGEVVGQQHLLGPGAPLRRLVEGSGAASVLLYGPPGTGKTTLASLISGA 101 Query 89 TGRRFEALSALSAGVKEVRAVIENSRKALLHGEQTVLFIDEVHRFSKTQQDALLSAVEHR 148 TGRRFEALSALSAGVKEVR VIE +R+ LL GEQTVLFIDEVHRFSKTQQDALL+AVE+R Sbjct 102 TGRRFEALSALSAGVKEVRGVIELARRRLLAGEQTVLFIDEVHRFSKTQQDALLAAVENR 161 Query 149 VVLLVAATTENPSFSVVAPLLSRSLILQLRPLTAEDTRAVVQRAIDDPRGLGRAVAVAPE 208 +VLLVAATTENPSFSVV+PLLSRSL+LQL+ LTA+D +++RA D RGLG + +A + Sbjct 162 IVLLVAATTENPSFSVVSPLLSRSLVLQLQSLTADDIENLLERARTDERGLGGDIEIAGD 221 Query 209 AVDLLVQLAAGDARRALTALEVAAEAA-QAAGE-----LVSVQTIERSVDKAAVRYDRDG 262 A+D LV+LAAGDARRALTALE AA AA AG+ L+ + T+E SVDKAAVRYDRDG Sbjct 222 AMDHLVRLAAGDARRALTALEAAAGAALDQAGDADRPVLLDLATVEASVDKAAVRYDRDG 281 Query 263 DQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIARRLMILASEDIGMAGPSALQ 322 DQHYDV+SAFIKS+RGSDVDAALHYLARML AGEDPRFIARRL++ ASEDIGMA P+ALQ Sbjct 282 DQHYDVISAFIKSIRGSDVDAALHYLARMLTAGEDPRFIARRLVVHASEDIGMADPTALQ 341 Query 323 VAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVTTALAAAMNDIKAGKAGLVPAHL 382 A AAAQ V LIGMPEA+L LA ATIHLATAPKS AV AL AAM D+ AG AGLVP HL Sbjct 342 TATAAAQAVQLIGMPEARLALAQATIHLATAPKSGAVIAALGAAMADVAAGNAGLVPPHL 401 Query 383 RDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELVDVDYYRPTGRGGEREIAGRLDR 442 RDGHY+GAA LGNA GY+Y HD PDGV+AQQYPPDELV VDYY+PT GGER+IAGR+D+ Sbjct 402 RDGHYAGAAKLGNAVGYRYPHDHPDGVLAQQYPPDELVGVDYYQPTTHGGERDIAGRVDK 461 Query 443 LRAIIR 448 LRAI+R Sbjct 462 LRAIVR 467 >gi|68536116|ref|YP_250821.1| recombination factor protein RarA [Corynebacterium jeikeium K411] gi|68263715|emb|CAI37203.1| conserved hypothetical protein [Corynebacterium jeikeium K411] Length=464 Score = 582 bits (1500), Expect = 4e-164, Method: Compositional matrix adjust. Identities = 299/425 (71%), Positives = 345/425 (82%), Gaps = 6/425 (1%) Query 29 APLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGSGVASVILYGPPGSGKTTLAALISQA 88 APLAVRMRP SLDEVVGQD +L PGSPLRRL++G G SVILYGPPG+GKTT+A+LISQ Sbjct 35 APLAVRMRPRSLDEVVGQDKVLGPGSPLRRLIDGHGDTSVILYGPPGTGKTTIASLISQV 94 Query 89 TGRRFEALSALSAGVKEVRAVIENSRKALLHGEQTVLFIDEVHRFSKTQQDALLSAVEHR 148 +GRRFEALSAL++GVKEVRA+IE +RK L+ GE TVLFIDEVHRFSKTQQDALLSAVE+R Sbjct 95 SGRRFEALSALNSGVKEVRAIIEQARKRLVLGEHTVLFIDEVHRFSKTQQDALLSAVENR 154 Query 149 VVLLVAATTENPSFSVVAPLLSRSLILQLRPLTAEDTRAVVQRAIDDPRGLGRAVAVAPE 208 VLLVAATTENPSFSVV+PLLSRSL++QL L+ D R V+QRA+DD RG + V P+ Sbjct 155 TVLLVAATTENPSFSVVSPLLSRSLLVQLSTLSDADIRTVLQRALDDDRGYAGRLRVTPD 214 Query 209 AVDLLVQLAAGDARRALTALEVAAEAAQAAG-----ELVSVQTIERSVDKAAVRYDRDGD 263 A++ LV +AAGDARR+LT LE AAE + G ELV+ Q ++RS++KA VRYDRDGD Sbjct 215 AMEQLVAMAAGDARRSLTYLEAAAEGLEPDGEDGVAELVASQ-VKRSLNKAVVRYDRDGD 273 Query 264 QHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIARRLMILASEDIGMAGPSALQV 323 QHYD+ SAFIKS+RGSD DAALHYLARML GEDPRFIARRL+I ASED+GMA P ALQV Sbjct 274 QHYDITSAFIKSIRGSDPDAALHYLARMLEGGEDPRFIARRLVIHASEDVGMADPQALQV 333 Query 324 AVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVTTALAAAMNDIKAGKAGLVPAHLR 383 AVAA V+ IGMPEA+L LA ATIHLATAPKSN V A+ +A+ D++AG+ G VP HLR Sbjct 334 AVAAYHAVSFIGMPEARLNLAQATIHLATAPKSNGVIAAINSAIGDVQAGRGGAVPPHLR 393 Query 384 DGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELVDVDYYRPTGRGGEREIAGRLDRL 443 DGHY GA ALGNA GY Y HDDP GVV QQY PD+L D YYRPT G E+ IA RL L Sbjct 394 DGHYQGAKALGNAVGYVYPHDDPKGVVPQQYLPDDLKDAVYYRPTTHGHEKTIAARLSSL 453 Query 444 RAIIR 448 RAI+R Sbjct 454 RAIVR 458 >gi|308276523|gb|ADO26422.1| Replication-associated recombination protein A [Corynebacterium pseudotuberculosis I19] gi|341824964|gb|AEK92485.1| Uncharacterized AAA domain-containing protein Rv2559c/MT2636 [Corynebacterium pseudotuberculosis PAT10] Length=456 Score = 582 bits (1500), Expect = 5e-164, Method: Compositional matrix adjust. Identities = 299/426 (71%), Positives = 347/426 (82%), Gaps = 1/426 (0%) Query 23 LGASAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGSGVASVILYGPPGSGKTTLA 82 A +PLA RMRP SLD+VVGQ HLL PG PLRRL+EG+G ASVILYGPPG+GKTT+A Sbjct 30 FAAGVHSPLAARMRPRSLDQVVGQQHLLGPGRPLRRLIEGAGEASVILYGPPGTGKTTIA 89 Query 83 ALISQATGRRFEALSALSAGVKEVRAVIENSRKALLHGEQTVLFIDEVHRFSKTQQDALL 142 +LIS ATG F LSAL++GVKEVRAVI+ +R++L+HG++TVLFIDEVHRFSKTQQDALL Sbjct 90 SLISTATGHHFVGLSALNSGVKEVRAVIDEARRSLIHGKRTVLFIDEVHRFSKTQQDALL 149 Query 143 SAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRPLTAEDTRAVVQRAIDDPRGLGRA 202 +AVE+R VLLVAATTENPSFSVV+PLLSRSL+LQL+PL + + V+QRAI D RGLG Sbjct 150 AAVENRTVLLVAATTENPSFSVVSPLLSRSLVLQLQPLDSGAIKEVLQRAIVDSRGLGSR 209 Query 203 VAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQAAGELVSVQTIERSVDKAAVRYDRDG 262 + V EA++ LV LA GDARRALT LE AAEA + E ++V TI+ +VD+A VRYDRDG Sbjct 210 IHVTDEALEQLVLLAGGDARRALTYLEAAAEAI-SDDEQLTVDTIQENVDRAIVRYDRDG 268 Query 263 DQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIARRLMILASEDIGMAGPSALQ 322 DQHYDV SAFIKS+RGSDVDAALHYLARM+ AGEDPRFIARRL+I ASEDIGMA PSALQ Sbjct 269 DQHYDVTSAFIKSIRGSDVDAALHYLARMIDAGEDPRFIARRLIIHASEDIGMADPSALQ 328 Query 323 VAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVTTALAAAMNDIKAGKAGLVPAHL 382 +AVAA Q V LIGMPEA++TLA ATIHLATAPKSN+V A+ A+ DIK GK G VPAHL Sbjct 329 IAVAAGQAVQLIGMPEARITLAQATIHLATAPKSNSVICAVDGALADIKKGKFGPVPAHL 388 Query 383 RDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELVDVDYYRPTGRGGEREIAGRLDR 442 RDGHY+GA LGNA GYKY HDDP GVV Q+Y P EL D YY PT G E+ I+ + R Sbjct 389 RDGHYAGAKQLGNAVGYKYPHDDPRGVVQQRYVPAELDDAVYYHPTKHGAEKRISDYIGR 448 Query 443 LRAIIR 448 LR +IR Sbjct 449 LRRMIR 454 >gi|300858568|ref|YP_003783551.1| hypothetical protein cpfrc_01151 [Corynebacterium pseudotuberculosis FRC41] gi|300686022|gb|ADK28944.1| hypothetical protein cpfrc_01151 [Corynebacterium pseudotuberculosis FRC41] gi|302206281|gb|ADL10623.1| Uncharacterized AAA domain-containing protein Rv2559c/MT2636 [Corynebacterium pseudotuberculosis C231] gi|302330838|gb|ADL21032.1| Uncharacterized AAA domain-containing protein Rv2559c/MT2636 [Corynebacterium pseudotuberculosis 1002] Length=445 Score = 582 bits (1499), Expect = 5e-164, Method: Compositional matrix adjust. Identities = 299/426 (71%), Positives = 347/426 (82%), Gaps = 1/426 (0%) Query 23 LGASAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGSGVASVILYGPPGSGKTTLA 82 A +PLA RMRP SLD+VVGQ HLL PG PLRRL+EG+G ASVILYGPPG+GKTT+A Sbjct 19 FAAGVHSPLAARMRPRSLDQVVGQQHLLGPGRPLRRLIEGAGEASVILYGPPGTGKTTIA 78 Query 83 ALISQATGRRFEALSALSAGVKEVRAVIENSRKALLHGEQTVLFIDEVHRFSKTQQDALL 142 +LIS ATG F LSAL++GVKEVRAVI+ +R++L+HG++TVLFIDEVHRFSKTQQDALL Sbjct 79 SLISTATGHHFVGLSALNSGVKEVRAVIDEARRSLIHGKRTVLFIDEVHRFSKTQQDALL 138 Query 143 SAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRPLTAEDTRAVVQRAIDDPRGLGRA 202 +AVE+R VLLVAATTENPSFSVV+PLLSRSL+LQL+PL + + V+QRAI D RGLG Sbjct 139 AAVENRTVLLVAATTENPSFSVVSPLLSRSLVLQLQPLDSGAIKEVLQRAIVDSRGLGSR 198 Query 203 VAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQAAGELVSVQTIERSVDKAAVRYDRDG 262 + V EA++ LV LA GDARRALT LE AAEA + E ++V TI+ +VD+A VRYDRDG Sbjct 199 IHVTDEALEQLVLLAGGDARRALTYLEAAAEAI-SDDEQLTVDTIQENVDRAIVRYDRDG 257 Query 263 DQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIARRLMILASEDIGMAGPSALQ 322 DQHYDV SAFIKS+RGSDVDAALHYLARM+ AGEDPRFIARRL+I ASEDIGMA PSALQ Sbjct 258 DQHYDVTSAFIKSIRGSDVDAALHYLARMIDAGEDPRFIARRLIIHASEDIGMADPSALQ 317 Query 323 VAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVTTALAAAMNDIKAGKAGLVPAHL 382 +AVAA Q V LIGMPEA++TLA ATIHLATAPKSN+V A+ A+ DIK GK G VPAHL Sbjct 318 IAVAAGQAVQLIGMPEARITLAQATIHLATAPKSNSVICAVDGALADIKKGKFGPVPAHL 377 Query 383 RDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELVDVDYYRPTGRGGEREIAGRLDR 442 RDGHY+GA LGNA GYKY HDDP GVV Q+Y P EL D YY PT G E+ I+ + R Sbjct 378 RDGHYAGAKQLGNAVGYKYPHDDPRGVVQQRYVPAELDDAVYYHPTKHGAEKRISDYIGR 437 Query 443 LRAIIR 448 LR +IR Sbjct 438 LRRMIR 443 >gi|334696986|gb|AEG81783.1| hypothetical protein CULC809_01251 [Corynebacterium ulcerans 809] Length=445 Score = 581 bits (1498), Expect = 7e-164, Method: Compositional matrix adjust. Identities = 301/426 (71%), Positives = 345/426 (81%), Gaps = 1/426 (0%) Query 23 LGASAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGSGVASVILYGPPGSGKTTLA 82 A A +PLA RMRP SLDEVVGQ HLL G PLRRL+EGSG ASVILYGPPG+GKTT+A Sbjct 19 FAAGAHSPLAARMRPRSLDEVVGQQHLLGQGRPLRRLIEGSGEASVILYGPPGTGKTTIA 78 Query 83 ALISQATGRRFEALSALSAGVKEVRAVIENSRKALLHGEQTVLFIDEVHRFSKTQQDALL 142 +LIS ATG F LSAL++GVKEVRAVIE +R++L+HG++TVLFIDEVHRFSKTQQDALL Sbjct 79 SLISSATGHHFVGLSALNSGVKEVRAVIEEARRSLIHGKRTVLFIDEVHRFSKTQQDALL 138 Query 143 SAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRPLTAEDTRAVVQRAIDDPRGLGRA 202 +AVE+R VLLVAATTENPSFSVV+PLLSRSL+LQL+PL + + V+QRAI DPRGLG Sbjct 139 AAVENRTVLLVAATTENPSFSVVSPLLSRSLVLQLQPLDPDAVKEVLQRAIVDPRGLGER 198 Query 203 VAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQAAGELVSVQTIERSVDKAAVRYDRDG 262 + V EA++ LV LA GDARRALT LE AAEA E ++V I +VD+A VRYDRDG Sbjct 199 IQVTDEALEQLVLLAGGDARRALTYLEAAAEAI-PDNEPLTVDAIRENVDRAIVRYDRDG 257 Query 263 DQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIARRLMILASEDIGMAGPSALQ 322 DQHYDV SAFIKS+RGSDVDAALHYLARM+ AGEDPRFIARRL+I ASEDIGMA PSALQ Sbjct 258 DQHYDVTSAFIKSIRGSDVDAALHYLARMIDAGEDPRFIARRLIIHASEDIGMADPSALQ 317 Query 323 VAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVTTALAAAMNDIKAGKAGLVPAHL 382 AVAA Q V +IGMPEA++TLA ATIHLATAPKSNAV A+ A+ DIK GK G VPAHL Sbjct 318 TAVAAGQAVQMIGMPEARITLAQATIHLATAPKSNAVICAVDGALADIKKGKFGPVPAHL 377 Query 383 RDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELVDVDYYRPTGRGGEREIAGRLDR 442 RDGHY+GA LGNA GYKY HDDP GVV Q+Y P EL + YY+PT G E+ I+ + R Sbjct 378 RDGHYAGAKQLGNAVGYKYPHDDPRGVVQQRYVPPELDNAVYYQPTEHGAEKRISDYIGR 437 Query 443 LRAIIR 448 LR +IR Sbjct 438 LRRMIR 443 >gi|337290872|ref|YP_004629893.1| hypothetical protein CULC22_01264 [Corynebacterium ulcerans BR-AD22] gi|334699178|gb|AEG83974.1| hypothetical protein CULC22_01264 [Corynebacterium ulcerans BR-AD22] Length=445 Score = 581 bits (1498), Expect = 8e-164, Method: Compositional matrix adjust. Identities = 301/426 (71%), Positives = 345/426 (81%), Gaps = 1/426 (0%) Query 23 LGASAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGSGVASVILYGPPGSGKTTLA 82 A A +PLA RMRP SLDEVVGQ HLL G PLRRL+EGSG ASVILYGPPG+GKTT+A Sbjct 19 FAAGAHSPLAARMRPRSLDEVVGQQHLLGQGRPLRRLIEGSGEASVILYGPPGTGKTTIA 78 Query 83 ALISQATGRRFEALSALSAGVKEVRAVIENSRKALLHGEQTVLFIDEVHRFSKTQQDALL 142 +LIS ATG F LSAL++GVKEVRAVIE +R++L+HG++TVLFIDEVHRFSKTQQDALL Sbjct 79 SLISSATGHHFVGLSALNSGVKEVRAVIEEARRSLIHGKRTVLFIDEVHRFSKTQQDALL 138 Query 143 SAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRPLTAEDTRAVVQRAIDDPRGLGRA 202 +AVE+R VLLVAATTENPSFSVV+PLLSRSL+LQL+PL + + V+QRAI DPRGLG Sbjct 139 AAVENRTVLLVAATTENPSFSVVSPLLSRSLVLQLQPLDPDAVKEVLQRAIVDPRGLGER 198 Query 203 VAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQAAGELVSVQTIERSVDKAAVRYDRDG 262 + V EA++ LV LA GDARRALT LE AAEA E ++V I +VD+A VRYDRDG Sbjct 199 IQVTDEALEQLVLLAGGDARRALTYLEAAAEAI-PDNEPLTVDAIRENVDRAIVRYDRDG 257 Query 263 DQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIARRLMILASEDIGMAGPSALQ 322 DQHYDV SAFIKS+RGSDVDAALHYLARM+ AGEDPRFIARRL+I ASEDIGMA PSALQ Sbjct 258 DQHYDVTSAFIKSIRGSDVDAALHYLARMIDAGEDPRFIARRLIIHASEDIGMADPSALQ 317 Query 323 VAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVTTALAAAMNDIKAGKAGLVPAHL 382 AVAA Q V +IGMPEA++TLA ATIHLATAPKSNAV A+ A+ DIK GK G VPAHL Sbjct 318 TAVAAGQAVQMIGMPEARITLAQATIHLATAPKSNAVICAVDGALADIKKGKFGPVPAHL 377 Query 383 RDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELVDVDYYRPTGRGGEREIAGRLDR 442 RDGHY+GA LGNA GYKY HDDP GVV Q+Y P EL + YY+PT G E+ I+ + R Sbjct 378 RDGHYAGAKQLGNAVGYKYPHDDPRGVVQQRYVPPELDNAVYYQPTEHGAEKRISDYIGR 437 Query 443 LRAIIR 448 LR +IR Sbjct 438 LRRMIR 443 >gi|256379279|ref|YP_003102939.1| recombination factor protein RarA [Actinosynnema mirum DSM 43827] gi|255923582|gb|ACU39093.1| AAA ATPase central domain protein [Actinosynnema mirum DSM 43827] Length=448 Score = 578 bits (1489), Expect = 8e-163, Method: Compositional matrix adjust. Identities = 309/429 (73%), Positives = 355/429 (83%), Gaps = 4/429 (0%) Query 26 SAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGSGVASVILYGPPGSGKTTLAALI 85 +A APLA RMRP +LDEVVGQDHLL PG+PLRRLVEG+ ASV+LYGPPG+GKTTLA L+ Sbjct 19 AANAPLAARMRPRTLDEVVGQDHLLGPGAPLRRLVEGAAPASVLLYGPPGTGKTTLATLV 78 Query 86 SQATGRRFEALSALSAGVKEVRAVIENSRKALLH-GEQTVLFIDEVHRFSKTQQDALLSA 144 SQATGRRF ALSALSAGVKEVRAVIE +++ L+ GE TVLFIDEVHRFSKTQQDALL A Sbjct 79 SQATGRRFAALSALSAGVKEVRAVIEEAKRRLVRSGEATVLFIDEVHRFSKTQQDALLGA 138 Query 145 VEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRPLTAEDTRAVVQRAIDDPRGLGRAVA 204 VE R+VLLVAATTENP FSVV+PLLSRSL+LQLRPLT R +V+RA D RGLG VA Sbjct 139 VEDRIVLLVAATTENPFFSVVSPLLSRSLVLQLRPLTDGSVRELVRRAAADERGLGGRVA 198 Query 205 VAPEAVDLLVQLAAGDARRALTALEVAAE---AAQAAGELVSVQTIERSVDKAAVRYDRD 261 + P+A D LV+LA GD RRALTALE AA+ A AA + + T+E +VDKAAVRYDR Sbjct 199 IEPDAEDHLVRLAGGDGRRALTALEAAADTVLAGGAASGSLDLATLEATVDKAAVRYDRQ 258 Query 262 GDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIARRLMILASEDIGMAGPSAL 321 GDQHYDV SAF+KS+RGSDVDAALHYLARM+ AGEDPRFIARRL+I A+ED+GMA P+AL Sbjct 259 GDQHYDVTSAFVKSIRGSDVDAALHYLARMIEAGEDPRFIARRLVIHATEDVGMADPTAL 318 Query 322 QVAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVTTALAAAMNDIKAGKAGLVPAH 381 Q AVAAAQ V LIG+PE L LAHAT+HLATAPKSNA+TTA+ AAM D++ G G VP H Sbjct 319 QTAVAAAQAVQLIGLPECALHLAHATVHLATAPKSNAITTAIGAAMEDVRKGLIGTVPPH 378 Query 382 LRDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELVDVDYYRPTGRGGEREIAGRLD 441 LRDGHY+GAA LGNAQGY+Y HD P+GV+ QQYPPD LV DYY PTGRGGER +A RL Sbjct 379 LRDGHYAGAAKLGNAQGYRYPHDVPEGVLTQQYPPDGLVGRDYYEPTGRGGERVLADRLP 438 Query 442 RLRAIIRKK 450 +LR ++R + Sbjct 439 KLRRVVRGQ 447 >gi|262202249|ref|YP_003273457.1| ATPase AAA [Gordonia bronchialis DSM 43247] gi|262085596|gb|ACY21564.1| AAA ATPase central domain protein [Gordonia bronchialis DSM 43247] Length=460 Score = 574 bits (1480), Expect = 9e-162, Method: Compositional matrix adjust. Identities = 312/451 (70%), Positives = 364/451 (81%), Gaps = 16/451 (3%) Query 7 DGLFDVPGVPMTSGHDLGASA-----GAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLVE 61 DGLFD PG P SG LGA APLAVRMRP SLDE+VGQ HLL GSPLRRL+ Sbjct 2 DGLFDPPGTPAVSG--LGAGPHGTRPDAPLAVRMRPQSLDEIVGQQHLLGAGSPLRRLIS 59 Query 62 GSGVASVILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKEVRAVIENSRKALLHGE 121 GSG ASV+LYGPPG+GKTT+A+LIS+ATG RFEALSALSAGVKEVRAVI+ +R+ L+ G+ Sbjct 60 GSGAASVLLYGPPGTGKTTMASLISRATGGRFEALSALSAGVKEVRAVIDIARRRLVEGQ 119 Query 122 QTVLFIDEVHRFSKTQQDALLSAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRPLT 181 QTVLFIDEVHRFSKTQQDALL AVE+R+VLLVAATTENPSFSVVAPLLSRSL+LQLR L+ Sbjct 120 QTVLFIDEVHRFSKTQQDALLDAVENRIVLLVAATTENPSFSVVAPLLSRSLVLQLRSLS 179 Query 182 AEDTRAVVQRAIDDPRGLGRAVAVAPEAVDLLVQLAAGDARRALTALEVAAEAA------ 235 +D V+ RA+ DPRGL V + A+D LV ++ GDARRALTALE +A+AA Sbjct 180 DDDILEVLGRAVADPRGLDGRVEITDAALDHLVAVSGGDARRALTALEASADAALRESAD 239 Query 236 ---QAAGELVSVQTIERSVDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARML 292 + G ++ + +E ++D+AAVRYDRDGDQHYDV SAFIKS+RGSDVDAALHYLARM+ Sbjct 240 DAGEPGGSVIDLPDVEAAIDRAAVRYDRDGDQHYDVTSAFIKSIRGSDVDAALHYLARMI 299 Query 293 VAGEDPRFIARRLMILASEDIGMAGPSALQVAVAAAQTVALIGMPEAQLTLAHATIHLAT 352 AGEDPRFI+RRLMI ASEDIGMA P+ALQ AVAAAQ VAL+GMPEA+L LA ATIHLAT Sbjct 300 AAGEDPRFISRRLMIHASEDIGMADPTALQTAVAAAQVVALVGMPEAKLALAQATIHLAT 359 Query 353 APKSNAVTTALAAAMNDIKAGKAGLVPAHLRDGHYSGAAALGNAQGYKYSHDDPDGVVAQ 412 APKS V A+ AA+ D++AGKAG VPAHLRD HY+GA +G+ +GY+Y HDDPDGV+AQ Sbjct 360 APKSGGVVAAIGAAIADVEAGKAGAVPAHLRDAHYAGAKKMGSGKGYRYPHDDPDGVLAQ 419 Query 413 QYPPDELVDVDYYRPTGRGGEREIAGRLDRL 443 QYPPD+LV VDYY PT G ERE+ RL +L Sbjct 420 QYPPDDLVGVDYYTPTDHGFERELGPRLAKL 450 >gi|226306471|ref|YP_002766431.1| ATPase [Rhodococcus erythropolis PR4] gi|226185588|dbj|BAH33692.1| putative ATPase [Rhodococcus erythropolis PR4] Length=479 Score = 571 bits (1472), Expect = 8e-161, Method: Compositional matrix adjust. Identities = 314/427 (74%), Positives = 358/427 (84%), Gaps = 6/427 (1%) Query 28 GAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGSGVASVILYGPPGSGKTTLAALISQ 87 GAPLAVRMRP +L EVVGQ HLL PG+PLRR+VEGSG ASV+LYGPPG+GKTTLA+LIS Sbjct 52 GAPLAVRMRPLTLGEVVGQQHLLGPGAPLRRMVEGSGAASVLLYGPPGTGKTTLASLISG 111 Query 88 ATGRRFEALSALSAGVKEVRAVIENSRKALLHGEQTVLFIDEVHRFSKTQQDALLSAVEH 147 ATGRRFEALSALSAGVKEVR VIE +R+ LL+GEQTVLFIDEVHRFSKTQQDALL+AVE+ Sbjct 112 ATGRRFEALSALSAGVKEVRGVIELARRRLLNGEQTVLFIDEVHRFSKTQQDALLAAVEN 171 Query 148 RVVLLVAATTENPSFSVVAPLLSRSLILQLRPLTAEDTRAVVQRAIDDPRGLGRAVAVAP 207 R+VLLV ATTENPSFSVV+ LLSRSL+LQL+ LTA D + +++RA+ D RG G A+A+ Sbjct 172 RIVLLVGATTENPSFSVVSALLSRSLVLQLQSLTAADVQELLERAVTDERGFGGAIAIDD 231 Query 208 EAVDLLVQLAAGDARRALTALEVAA-----EAAQAAGELV-SVQTIERSVDKAAVRYDRD 261 +A++ LV+LAAGDARRALTALE AA A ++G +V + T+E SVDKAAVRYDR Sbjct 232 DAMEHLVRLAAGDARRALTALEAAAGAALDTAGDSSGPVVLDLATVEASVDKAAVRYDRA 291 Query 262 GDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIARRLMILASEDIGMAGPSAL 321 GDQHYDV+SAFIKS+RGSDVDAALHYLARML AGEDPRFIARRL++ ASEDIGMA P AL Sbjct 292 GDQHYDVISAFIKSIRGSDVDAALHYLARMLTAGEDPRFIARRLVVHASEDIGMADPMAL 351 Query 322 QVAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVTTALAAAMNDIKAGKAGLVPAH 381 Q A AAAQ V LIGMPEA+L LA ATIHLATAPKS AV AL AAM D+ AGK+GLVP H Sbjct 352 QTATAAAQAVQLIGMPEARLALAQATIHLATAPKSGAVIAALGAAMADVAAGKSGLVPPH 411 Query 382 LRDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELVDVDYYRPTGRGGEREIAGRLD 441 LRDGHY GA LGNA GYKY HD DGV+ QQYPPD+LV VDYY+PT G EREIA R+ Sbjct 412 LRDGHYKGAEQLGNAVGYKYPHDTRDGVLRQQYPPDDLVGVDYYQPTAHGNEREIADRVS 471 Query 442 RLRAIIR 448 +LR I+R Sbjct 472 KLRRIVR 478 >gi|229493645|ref|ZP_04387430.1| recombination factor protein RarA [Rhodococcus erythropolis SK121] gi|229319606|gb|EEN85442.1| recombination factor protein RarA [Rhodococcus erythropolis SK121] Length=470 Score = 570 bits (1468), Expect = 2e-160, Method: Compositional matrix adjust. Identities = 314/427 (74%), Positives = 357/427 (84%), Gaps = 6/427 (1%) Query 28 GAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGSGVASVILYGPPGSGKTTLAALISQ 87 GAPLAVRMRP +L EVVGQ HLL PG+PLRR+VEGSG ASV+LYGPPG+GKTTLA+LIS Sbjct 43 GAPLAVRMRPLTLGEVVGQQHLLGPGAPLRRMVEGSGAASVLLYGPPGTGKTTLASLISG 102 Query 88 ATGRRFEALSALSAGVKEVRAVIENSRKALLHGEQTVLFIDEVHRFSKTQQDALLSAVEH 147 ATGRRFEALSALSAGVKEVR VIE +R+ LL+GEQTVLFIDEVHRFSKTQQDALL+AVE+ Sbjct 103 ATGRRFEALSALSAGVKEVRGVIELARRRLLNGEQTVLFIDEVHRFSKTQQDALLAAVEN 162 Query 148 RVVLLVAATTENPSFSVVAPLLSRSLILQLRPLTAEDTRAVVQRAIDDPRGLGRAVAVAP 207 R+VLLV ATTENPSFSVV+ LLSRSL+LQL+ LTA D + +++RA+ D RG G A+ + Sbjct 163 RIVLLVGATTENPSFSVVSALLSRSLVLQLQSLTAADVQELLERAVADERGFGGAITIDD 222 Query 208 EAVDLLVQLAAGDARRALTALEVAA-----EAAQAAGELV-SVQTIERSVDKAAVRYDRD 261 +A++ LV+LAAGDARRALTALE AA A A+G +V + T+E SVDKAAVRYDR Sbjct 223 DAMEHLVRLAAGDARRALTALEAAAGAALDTAGDASGPVVLDLATVEASVDKAAVRYDRA 282 Query 262 GDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIARRLMILASEDIGMAGPSAL 321 GDQHYDV+SAFIKS+RGSDVDAALHYLARML AGEDPRFIARRL++ ASEDIGMA P AL Sbjct 283 GDQHYDVISAFIKSIRGSDVDAALHYLARMLTAGEDPRFIARRLVVHASEDIGMADPMAL 342 Query 322 QVAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVTTALAAAMNDIKAGKAGLVPAH 381 Q A AAAQ V LIGMPEA+L LA ATIHLATAPKS AV AL AAM D+ AGK+GLVP H Sbjct 343 QTATAAAQAVQLIGMPEARLALAQATIHLATAPKSGAVIAALGAAMADVAAGKSGLVPPH 402 Query 382 LRDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELVDVDYYRPTGRGGEREIAGRLD 441 LRDGHY GA LGNA GYKY HD DGV+ QQYPPD+LV VDYY+PT G EREIA R+ Sbjct 403 LRDGHYKGAEQLGNAVGYKYPHDTRDGVLRQQYPPDDLVGVDYYQPTAHGNEREIADRVS 462 Query 442 RLRAIIR 448 +LR I+R Sbjct 463 KLRRIVR 469 >gi|38233937|ref|NP_939704.1| recombination factor protein RarA [Corynebacterium diphtheriae NCTC 13129] gi|38200198|emb|CAE49879.1| Conserved hypothetical protein (putative ATP/GTP binding protein) [Corynebacterium diphtheriae] Length=456 Score = 565 bits (1455), Expect = 7e-159, Method: Compositional matrix adjust. Identities = 301/455 (67%), Positives = 356/455 (79%), Gaps = 7/455 (1%) Query 3 EAVSDGLFDVPGVPMTSGHD------LGASAGAPLAVRMRPASLDEVVGQDHLLAPGSPL 56 +++ D LFD P S D A APLA RMRP SLDEVVGQ HLL G PL Sbjct 2 KSIMDSLFDSPVQTARSSSDSDAHNFFKAGPYAPLAARMRPQSLDEVVGQRHLLDSGKPL 61 Query 57 RRLVEGSGVASVILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKEVRAVIENSRKA 116 +RL+ GSG ASVILYGPPG+GKTT+A+LIS TG F LSAL++GVKE+R VI+ +R+ Sbjct 62 QRLIAGSGDASVILYGPPGTGKTTIASLISAGTGHEFVGLSALNSGVKEIREVIDQARRN 121 Query 117 LLHGEQTVLFIDEVHRFSKTQQDALLSAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQ 176 L+HG++TVLFIDEVHRFSKTQQDALL+AVE+R VLLVAATTENPSFSVVAPLLSRSLILQ Sbjct 122 LIHGKRTVLFIDEVHRFSKTQQDALLAAVENRTVLLVAATTENPSFSVVAPLLSRSLILQ 181 Query 177 LRPLTAEDTRAVVQRAIDDPRGLGRAVAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQ 236 L+PLT +D + V+ A+ D RGL + ++ EA++ LV L+ GDARR+LT LE A+E+ Sbjct 182 LKPLTHDDIKTVLLHALQDKRGLDNRITISDEALEQLVLLSGGDARRSLTYLEAASESL- 240 Query 237 AAGELVSVQTIERSVDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGE 296 A GE ++ + I +VDKA VRYDRDGDQHYDVVSAFIKS+RGSDVDAALHYLARM+ AGE Sbjct 241 ADGEELTPEIIRHNVDKAIVRYDRDGDQHYDVVSAFIKSMRGSDVDAALHYLARMIDAGE 300 Query 297 DPRFIARRLMILASEDIGMAGPSALQVAVAAAQTVALIGMPEAQLTLAHATIHLATAPKS 356 DPRFIARRL+I ASED+GMA P AL VAVAA+Q VALIGMPEA++ LA ATIHLATAPKS Sbjct 301 DPRFIARRLVIHASEDVGMADPQALSVAVAASQAVALIGMPEARINLAQATIHLATAPKS 360 Query 357 NAVTTALAAAMNDIKAGKAGLVPAHLRDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPP 416 NAV TA+ AA+ D+K GK G VPAHLRDGHY+GA LGNA GYKY HDDP G+V QQY P Sbjct 361 NAVITAIDAALADVKQGKTGPVPAHLRDGHYAGAKQLGNAVGYKYPHDDPRGIVEQQYIP 420 Query 417 DELVDVDYYRPTGRGGEREIAGRLDRLRAIIRKKR 451 + L DV YYRP+ G E+ I L +LR I+R +R Sbjct 421 NGLEDVVYYRPSEHGAEQRIESYLGKLRRIVRGQR 455 >gi|172040631|ref|YP_001800345.1| recombination factor protein RarA [Corynebacterium urealyticum DSM 7109] gi|171851935|emb|CAQ04911.1| conserved hypothetical protein [Corynebacterium urealyticum DSM 7109] Length=461 Score = 564 bits (1454), Expect = 9e-159, Method: Compositional matrix adjust. Identities = 287/426 (68%), Positives = 346/426 (82%), Gaps = 6/426 (1%) Query 29 APLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGSGVASVILYGPPGSGKTTLAALISQA 88 APLAVRMRP SL EVVGQDH+L PG+PL+RL++G G +SVIL+GPPG+GKTT+A+LIS A Sbjct 30 APLAVRMRPRSLAEVVGQDHVLGPGTPLQRLIDGRGDSSVILFGPPGTGKTTIASLISAA 89 Query 89 TGRRFEALSALSAGVKEVRAVIENSRKALLHGEQTVLFIDEVHRFSKTQQDALLSAVEHR 148 +GR F ALSAL++GVKEVRAVIE++R+ LLHG +TVLFIDEVHRFSKTQQDALL+AVE+R Sbjct 90 SGRHFVALSALNSGVKEVRAVIEDARRRLLHGARTVLFIDEVHRFSKTQQDALLAAVENR 149 Query 149 VVLLVAATTENPSFSVVAPLLSRSLILQLRPLTAEDTRAVVQRAIDDPRGLGRAVAVAPE 208 VLLVAATTENPSFSVV+PLLSRSL++QL+ L + ++V++RAI D RGL V +A + Sbjct 150 TVLLVAATTENPSFSVVSPLLSRSLLVQLKSLDEDGIKSVLRRAIADERGLAGQVQIADD 209 Query 209 AVDLLVQLAAGDARRALTALEVAAE---AAQAAGE---LVSVQTIERSVDKAAVRYDRDG 262 A+D L ++ GDARR+LT LE AE + AG+ ++V + RS +KA RYDRDG Sbjct 210 ALDQLAAVSGGDARRSLTYLEAVAEDVLQQKEAGDEAPTITVADVTRSTNKAVARYDRDG 269 Query 263 DQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIARRLMILASEDIGMAGPSALQ 322 DQHYDV SAFIKS+RGSD DAALHYLARML GEDPRFI+RRL+I+ASEDIG A P+ALQ Sbjct 270 DQHYDVTSAFIKSMRGSDPDAALHYLARMLEGGEDPRFISRRLVIVASEDIGTADPTALQ 329 Query 323 VAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVTTALAAAMNDIKAGKAGLVPAHL 382 VAVAA Q V+ IGMPEA++TLAHAT+H+ATAPKSNA + A+ DI+AGK +VPAHL Sbjct 330 VAVAAHQAVSFIGMPEARITLAHATVHMATAPKSNAAYVGINEAIADIRAGKGAIVPAHL 389 Query 383 RDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELVDVDYYRPTGRGGEREIAGRLDR 442 RDGHYSGA ALGNA GY+Y HDDP GV+ QQY PD+LV+ YYRPT G ER I RLD Sbjct 390 RDGHYSGAKALGNATGYQYPHDDPRGVLRQQYLPDDLVEAVYYRPTTHGHERTIHSRLDT 449 Query 443 LRAIIR 448 LR I+R Sbjct 450 LRGIVR 455 >gi|260578811|ref|ZP_05846718.1| AAA family ATPase [Corynebacterium jeikeium ATCC 43734] gi|258603109|gb|EEW16379.1| AAA family ATPase [Corynebacterium jeikeium ATCC 43734] Length=464 Score = 563 bits (1450), Expect = 3e-158, Method: Compositional matrix adjust. Identities = 301/425 (71%), Positives = 345/425 (82%), Gaps = 6/425 (1%) Query 29 APLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGSGVASVILYGPPGSGKTTLAALISQA 88 APLAVRMRP SLDEVVGQD +L PGSPLRRL++G G SVILYGPPG+GKTT+A+LISQA Sbjct 35 APLAVRMRPRSLDEVVGQDKVLGPGSPLRRLIDGHGDTSVILYGPPGTGKTTIASLISQA 94 Query 89 TGRRFEALSALSAGVKEVRAVIENSRKALLHGEQTVLFIDEVHRFSKTQQDALLSAVEHR 148 +GRRFEALSAL++GVKEVRA+IE +RK L+ GE TVLFIDEVHRFSKTQQDALLSAVE+R Sbjct 95 SGRRFEALSALNSGVKEVRAIIEQARKRLVLGEHTVLFIDEVHRFSKTQQDALLSAVENR 154 Query 149 VVLLVAATTENPSFSVVAPLLSRSLILQLRPLTAEDTRAVVQRAIDDPRGLGRAVAVAPE 208 VLLVAATTENPSFSVV+PLLSRSL++QL L+ D R V+QRA+DD RG + V E Sbjct 155 TVLLVAATTENPSFSVVSPLLSRSLLVQLSSLSDADIRTVLQRALDDERGYAGRLRVTSE 214 Query 209 AVDLLVQLAAGDARRALTALEVAAEAAQAAG-----ELVSVQTIERSVDKAAVRYDRDGD 263 A+D LV +AAGDARR+LT LE AAE + G ELV+ Q +++S++KA RYDRDGD Sbjct 215 AMDQLVAMAAGDARRSLTYLEAAAEGVEPDGENGVAELVASQ-VKKSLNKAVARYDRDGD 273 Query 264 QHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIARRLMILASEDIGMAGPSALQV 323 QHYD+ SAFIKS+RGSD DAALHYLARML GEDPRFIARRL+I ASEDIGMA P ALQV Sbjct 274 QHYDITSAFIKSIRGSDPDAALHYLARMLEGGEDPRFIARRLVIHASEDIGMADPQALQV 333 Query 324 AVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVTTALAAAMNDIKAGKAGLVPAHLR 383 AVAA V+ IGMPEA+L LA ATIHLATAPKSN V A+ +A+ D++AGK G VPAHLR Sbjct 334 AVAAYHAVSFIGMPEARLNLAQATIHLATAPKSNGVIAAINSAIGDVQAGKGGTVPAHLR 393 Query 384 DGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELVDVDYYRPTGRGGEREIAGRLDRL 443 DGHY GA ALGNA GY Y HDDP GVV QQY PD+L D YY+PT G E+ IA RL L Sbjct 394 DGHYQGAKALGNAVGYVYPHDDPKGVVPQQYLPDDLKDAVYYQPTTHGHEKTIAARLSSL 453 Query 444 RAIIR 448 RAI+R Sbjct 454 RAIVR 458 >gi|225021329|ref|ZP_03710521.1| hypothetical protein CORMATOL_01348 [Corynebacterium matruchotii ATCC 33806] gi|224945711|gb|EEG26920.1| hypothetical protein CORMATOL_01348 [Corynebacterium matruchotii ATCC 33806] Length=451 Score = 560 bits (1443), Expect = 2e-157, Method: Compositional matrix adjust. Identities = 299/447 (67%), Positives = 355/447 (80%), Gaps = 4/447 (0%) Query 5 VSDG-LFDVP--GVPMTSGHDLGASAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLVE 61 ++DG LFD P G + G S APLA RMRP SLDEV GQDH+LA G PLRRL+E Sbjct 1 MTDGALFDAPTGGTRSSGGDYFAVSPTAPLAARMRPRSLDEVAGQDHVLAAGKPLRRLIE 60 Query 62 GSGVASVILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKEVRAVIENSRKALLHGE 121 GSG ASVILYGPPG+GKTT+A+LISQAT R+F LSAL++GVKEVRAVI+ +R+ L+ G Sbjct 61 GSGDASVILYGPPGTGKTTIASLISQATARKFVGLSALNSGVKEVRAVIDQARRDLIQGM 120 Query 122 QTVLFIDEVHRFSKTQQDALLSAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRPLT 181 TVLFIDEVHRFSKTQQDALL+AVE+RVVLLVAATTENPSFSVVAPLLSRSLI++L L Sbjct 121 STVLFIDEVHRFSKTQQDALLAAVENRVVLLVAATTENPSFSVVAPLLSRSLIVKLESLD 180 Query 182 AEDTRAVVQRAIDDPRGLGRAVAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQAAGEL 241 RAV++RA+ D RGLG + + A+D LV L+ GDARR+LT LE AAE+ GEL Sbjct 181 DASVRAVLRRALVDERGLGGRITASDAAIDQLVALSGGDARRSLTYLEAAAESVPDGGEL 240 Query 242 VSVQTIERSVDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFI 301 S+ + ++D+A VRYDRDGDQHYDV SAFIKS+RGSDVDAA+HYLARMLVAGEDPRF+ Sbjct 241 -SMDVVAANIDRAVVRYDRDGDQHYDVASAFIKSIRGSDVDAAVHYLARMLVAGEDPRFV 299 Query 302 ARRLMILASEDIGMAGPSALQVAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVTT 361 ARRL+I A+ED+G+A P AL VAVAAA+ V LIGMPEA++ LA ATI+LATAPKSNA Sbjct 300 ARRLVIAAAEDVGLADPQALSVAVAAAEAVQLIGMPEARIPLAEATIYLATAPKSNAAYV 359 Query 362 ALAAAMNDIKAGKAGLVPAHLRDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELVD 421 A+ AM D++A K+G+VP HLRDGHY+GA LGNA GY Y HDDP GVVAQQY PD L Sbjct 360 AIDQAMGDVRAAKSGVVPPHLRDGHYAGAQDLGNAVGYVYPHDDPHGVVAQQYLPDSLAG 419 Query 422 VDYYRPTGRGGEREIAGRLDRLRAIIR 448 V YY+PT RG E +AG +++LRA+IR Sbjct 420 VTYYQPTMRGNEGRLAGVVEKLRALIR 446 >gi|237785603|ref|YP_002906308.1| hypothetical protein ckrop_1012 [Corynebacterium kroppenstedtii DSM 44385] gi|237758515|gb|ACR17765.1| conserved hypothetical protein [Corynebacterium kroppenstedtii DSM 44385] Length=459 Score = 559 bits (1441), Expect = 3e-157, Method: Compositional matrix adjust. Identities = 276/424 (66%), Positives = 343/424 (81%), Gaps = 1/424 (0%) Query 27 AGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGSGVASVILYGPPGSGKTTLAALIS 86 + APLAVRMRP +LDEVVGQ+H+L GSPLRRLVEG+G +SVIL+GPPG+GKTT+A+L+S Sbjct 35 SSAPLAVRMRPRNLDEVVGQEHVLGQGSPLRRLVEGAGDSSVILFGPPGTGKTTIASLVS 94 Query 87 QATGRRFEALSALSAGVKEVRAVIENSRKALLHGEQTVLFIDEVHRFSKTQQDALLSAVE 146 TGRRF LSALS+GVKE+R+V++ +R+AL+ G QTVLFIDEVHRFSKTQQDALL+AVE Sbjct 95 STTGRRFRVLSALSSGVKEIRSVLKEARQALIDGVQTVLFIDEVHRFSKTQQDALLAAVE 154 Query 147 HRVVLLVAATTENPSFSVVAPLLSRSLILQLRPLTAEDTRAVVQRAIDDPRGLGRAVAVA 206 +R VLLVAATTENP+F+VV PLLSRSL++QL PL E R V+ R++ RGL + + Sbjct 155 NRTVLLVAATTENPNFAVVGPLLSRSLLVQLEPLDDEAIRTVINRSVSSQRGLAGRIRID 214 Query 207 PEAVDLLVQLAAGDARRALTALEVAAEAAQAAGELVSVQTIERSVDKAAVRYDRDGDQHY 266 +AV+ +V +A GDARRALT +E +A++ GE ++ + + +VD+A V+YDRDGDQHY Sbjct 215 DDAVNSIVAMAGGDARRALTYVEASAQSLDD-GETITPEIVANNVDRALVKYDRDGDQHY 273 Query 267 DVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIARRLMILASEDIGMAGPSALQVAVA 326 DV+SAFIKS+RGSDVDAALHYLARM+ AGEDPRFIARRL+ILASEDIGMA PSALQ AVA Sbjct 274 DVISAFIKSIRGSDVDAALHYLARMVEAGEDPRFIARRLVILASEDIGMADPSALQTAVA 333 Query 327 AAQTVALIGMPEAQLTLAHATIHLATAPKSNAVTTALAAAMNDIKAGKAGLVPAHLRDGH 386 A V++IGMPEA++TLA ATIHLATA KSNAV A+ +A+ D++ GKAG +P HLRDGH Sbjct 334 AMHAVSMIGMPEARITLAQATIHLATAAKSNAVIVAIDSAIKDVRKGKAGAIPRHLRDGH 393 Query 387 YSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELVDVDYYRPTGRGGEREIAGRLDRLRAI 446 Y GA +G+A GY Y HDDP GVV QQYPPDE+V+ YY PT G ER + RL+ + I Sbjct 394 YEGAKRIGSAVGYVYPHDDPRGVVTQQYPPDEVVEQHYYVPTAHGEERALQSRLEAIEKI 453 Query 447 IRKK 450 +R K Sbjct 454 VRGK 457 >gi|305681055|ref|ZP_07403862.1| recombination factor protein RarA [Corynebacterium matruchotii ATCC 14266] gi|305659260|gb|EFM48760.1| recombination factor protein RarA [Corynebacterium matruchotii ATCC 14266] Length=451 Score = 553 bits (1425), Expect = 2e-155, Method: Compositional matrix adjust. Identities = 298/447 (67%), Positives = 353/447 (79%), Gaps = 4/447 (0%) Query 5 VSDG-LFDVPGVPMTSGHD--LGASAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLVE 61 ++DG LFD P S S APLA RMRP SLDEV GQDH+LA G PLRRL+E Sbjct 1 MTDGALFDAPTGGTGSSGGDYFAVSPTAPLAARMRPRSLDEVAGQDHVLAAGKPLRRLIE 60 Query 62 GSGVASVILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKEVRAVIENSRKALLHGE 121 GSG ASVILYGPPG+GKTT+A+LISQAT R+F LSAL++GVKEVRAVI+ +R+ L+ G Sbjct 61 GSGDASVILYGPPGTGKTTIASLISQATARKFVGLSALNSGVKEVRAVIDQARRDLIQGM 120 Query 122 QTVLFIDEVHRFSKTQQDALLSAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRPLT 181 TVLFIDEVHRFSKTQQDALL+AVE+RVVLLVAATTENPSFSVVAPLLSRSLI++L L Sbjct 121 STVLFIDEVHRFSKTQQDALLAAVENRVVLLVAATTENPSFSVVAPLLSRSLIVKLESLD 180 Query 182 AEDTRAVVQRAIDDPRGLGRAVAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQAAGEL 241 RAV++RA+ D RGLG + + A+D LV L+ GDARR+LT LE AAE+ GEL Sbjct 181 DASVRAVLRRALVDERGLGGRITASDAAIDQLVALSGGDARRSLTYLEAAAESVPDGGEL 240 Query 242 VSVQTIERSVDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFI 301 SV + ++D+A VRYD+DGDQHYDV SAFIKS+RGSDVDAA+HYLARMLVAGEDPRF+ Sbjct 241 -SVDVVAANIDRAVVRYDQDGDQHYDVASAFIKSIRGSDVDAAVHYLARMLVAGEDPRFV 299 Query 302 ARRLMILASEDIGMAGPSALQVAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVTT 361 ARRL+I A+ED+G+A P AL VAVAAA+ V LIGMPEA++ LA ATI+LATAPKSNA Sbjct 300 ARRLVIAAAEDVGLADPQALSVAVAAAEAVQLIGMPEARIPLAEATIYLATAPKSNAAYV 359 Query 362 ALAAAMNDIKAGKAGLVPAHLRDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELVD 421 A+ AM D++A K+G+VP HLRDGHY+GA LGNA GY Y HDDP GVVAQQY PD L Sbjct 360 AIDQAMGDVRAAKSGVVPPHLRDGHYAGAQDLGNAVGYVYPHDDPHGVVAQQYLPDSLAG 419 Query 422 VDYYRPTGRGGEREIAGRLDRLRAIIR 448 V YY+PT RG E +AG +++LRA+IR Sbjct 420 VTYYQPTMRGNEGRLAGVVEKLRALIR 446 >gi|300784614|ref|YP_003764905.1| ATPase [Amycolatopsis mediterranei U32] gi|299794128|gb|ADJ44503.1| putative ATPase [Amycolatopsis mediterranei U32] gi|340526037|gb|AEK41242.1| recombination factor protein RarA [Amycolatopsis mediterranei S699] Length=458 Score = 553 bits (1425), Expect = 2e-155, Method: Compositional matrix adjust. Identities = 298/424 (71%), Positives = 345/424 (82%), Gaps = 2/424 (0%) Query 27 AGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGSGVASVILYGPPGSGKTTLAALIS 86 A +PLAVRMRP SL EVVGQ HLL G+PLRRLVEG+ ASV+LYGPPG+GKTTLA L+S Sbjct 33 ASSPLAVRMRPRSLGEVVGQQHLLREGAPLRRLVEGAAPASVLLYGPPGTGKTTLANLVS 92 Query 87 QATGRRFEALSALSAGVKEVRAVIENSRKA-LLHGEQTVLFIDEVHRFSKTQQDALLSAV 145 ATGRRF A+SALSAGVKEVR VIE +R+ + E TVLFIDEVHRFSKTQQDALL AV Sbjct 93 IATGRRFVAMSALSAGVKEVRGVIEEARRRRQYNAENTVLFIDEVHRFSKTQQDALLGAV 152 Query 146 EHRVVLLVAATTENPSFSVVAPLLSRSLILQLRPLTAEDTRAVVQRAIDDPRGLGRAVAV 205 E R VLLVAATTENPSFSVV+PLLSRSL+LQLRPLT ED A+++RA+ D RGLG + + Sbjct 153 EDRTVLLVAATTENPSFSVVSPLLSRSLVLQLRPLTDEDITALLERALADERGLGGELTL 212 Query 206 APEAVDLLVQLAAGDARRALTALEVAAEAAQAAG-ELVSVQTIERSVDKAAVRYDRDGDQ 264 +A LV+LA GDARRALTALE AA+AA A + + + +E +VDKAAVRYDRDGDQ Sbjct 213 TEDARAHLVRLAGGDARRALTALEAAADAASATEAKTIDLPIVESTVDKAAVRYDRDGDQ 272 Query 265 HYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIARRLMILASEDIGMAGPSALQVA 324 HYDV+SAFIKS+RGSDVDAALHYLARM+ AGEDPRF+ARRL++ ASEDIGMA P+ALQ A Sbjct 273 HYDVISAFIKSIRGSDVDAALHYLARMIEAGEDPRFLARRLVVHASEDIGMADPTALQSA 332 Query 325 VAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVTTALAAAMNDIKAGKAGLVPAHLRD 384 VAAA V IGMPE +L LA AT+HLATAPKSN+V + AA+ D++AG AG VP HLRD Sbjct 333 VAAAHAVQFIGMPEGRLALAQATVHLATAPKSNSVIKGIDAALADVRAGLAGTVPPHLRD 392 Query 385 GHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELVDVDYYRPTGRGGEREIAGRLDRLR 444 GHY+GA LGNAQGY+Y HD P+GV+AQQYPPDELV DYY PT RG ER +A R+ +LR Sbjct 393 GHYAGAKKLGNAQGYRYPHDVPEGVLAQQYPPDELVGRDYYEPTQRGAERPLAERVPKLR 452 Query 445 AIIR 448 IR Sbjct 453 RTIR 456 >gi|331697349|ref|YP_004333588.1| AAA ATPase central domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326952038|gb|AEA25735.1| AAA ATPase central domain protein [Pseudonocardia dioxanivorans CB1190] Length=456 Score = 551 bits (1421), Expect = 6e-155, Method: Compositional matrix adjust. Identities = 306/450 (68%), Positives = 359/450 (80%), Gaps = 6/450 (1%) Query 5 VSDGLFDV--PGVPMTSGHDLGASAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEG 62 +DGLFD+ P + GAPLAVRMRP SLDEVVGQ HLL PG+PLRRL+EG Sbjct 2 TTDGLFDIAEPDDAFGGPAEPQVREGAPLAVRMRPRSLDEVVGQRHLLGPGAPLRRLLEG 61 Query 63 SGVASVILYGPPGSGKTTLAALISQATG--RRFEALSALSAGVKEVRAVIENSRKAL-LH 119 ASV+LYGPPG+GKTTLA L++++ G R F ALSALSAGVKE+RAVIE++R+ L Sbjct 62 GAPASVLLYGPPGTGKTTLARLMARSGGGSRHFVALSALSAGVKELRAVIEDARRRLDRD 121 Query 120 GEQTVLFIDEVHRFSKTQQDALLSAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRP 179 G TVLFIDEVHRFSKTQQDALL AVE R+VLLVAATTENPSFSVV+PLLSRSLILQLR Sbjct 122 GRSTVLFIDEVHRFSKTQQDALLGAVEDRLVLLVAATTENPSFSVVSPLLSRSLILQLRS 181 Query 180 LTAEDTRAVVQRAIDDPRGLGRAVAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQAAG 239 L ++ RA+++RA+ D RGLG +V +A + D LV+LAAGDARRALTALE AA+ ++AG Sbjct 182 LEPDELRALLRRAVVDGRGLGGSVELADDGEDALVRLAAGDARRALTALEAAADGVRSAG 241 Query 240 -ELVSVQTIERSVDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDP 298 + + +ER+V + AVRYDR GDQHYDV+SAFIKS+RGSD DAALHYLARM+VAGEDP Sbjct 242 GHSIGLADVERAVTEVAVRYDRAGDQHYDVISAFIKSIRGSDPDAALHYLARMIVAGEDP 301 Query 299 RFIARRLMILASEDIGMAGPSALQVAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNA 358 RFIARRLMI ASEDIG+A P+ALQ A AAAQ V L+GMPEA++ LA AT+HLATAPKSNA Sbjct 302 RFIARRLMIHASEDIGLADPTALQAATAAAQVVQLVGMPEARIALAQATLHLATAPKSNA 361 Query 359 VTTALAAAMNDIKAGKAGLVPAHLRDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDE 418 V TA+ AAM +++AG G VP HLRDGHYSGA LGNA GY+Y HDD DGV+AQQYPPD+ Sbjct 362 VITAIDAAMAEVRAGAVGSVPPHLRDGHYSGAEKLGNAVGYRYPHDDADGVLAQQYPPDD 421 Query 419 LVDVDYYRPTGRGGEREIAGRLDRLRAIIR 448 LV DYY PT RG ER +A RL RLR +R Sbjct 422 LVGRDYYVPTTRGSERVLAERLPRLRRAVR 451 >gi|134098618|ref|YP_001104279.1| recombination factor protein RarA [Saccharopolyspora erythraea NRRL 2338] gi|291009604|ref|ZP_06567577.1| recombination factor protein RarA [Saccharopolyspora erythraea NRRL 2338] gi|133911241|emb|CAM01354.1| AAA ATPase, central region [Saccharopolyspora erythraea NRRL 2338] Length=453 Score = 548 bits (1412), Expect = 6e-154, Method: Compositional matrix adjust. Identities = 306/422 (73%), Positives = 349/422 (83%), Gaps = 2/422 (0%) Query 29 APLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGSGVASVILYGPPGSGKTTLAALISQA 88 APLAVRMRP SLDEV+GQ HLL PG+PLRRLVEG+ ASV+LYGPPG+GKTTLA L+S A Sbjct 27 APLAVRMRPRSLDEVIGQKHLLGPGAPLRRLVEGAAPASVLLYGPPGTGKTTLANLVSLA 86 Query 89 TGRRFEALSALSAGVKEVRAVIENSRKAL-LHGEQTVLFIDEVHRFSKTQQDALLSAVEH 147 TGRRF ALSALS+GVKEVRAVIE +R+ L E TVLFIDEVHRFSKTQQDALL AVE Sbjct 87 TGRRFVALSALSSGVKEVRAVIEEARRRLGRTAEATVLFIDEVHRFSKTQQDALLGAVED 146 Query 148 RVVLLVAATTENPSFSVVAPLLSRSLILQLRPLTAEDTRAVVQRAIDDPRGLGRAVAVAP 207 R VLLVAATTENPSFSVVAPLLSRSL+LQLR +D R +V+RA+ D RGLG A+ + P Sbjct 147 RTVLLVAATTENPSFSVVAPLLSRSLVLQLRSHGEDDIRELVRRAVADERGLGGALELEP 206 Query 208 EAVDLLVQLAAGDARRALTALEVAAEAAQAAG-ELVSVQTIERSVDKAAVRYDRDGDQHY 266 EA LV LA GDARRALTALE AAE+A + G + + + T+E +VD+AAV YDRDGDQHY Sbjct 207 EAEAHLVSLAGGDARRALTALEAAAESAASTGSDKIDLTTVEATVDRAAVLYDRDGDQHY 266 Query 267 DVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIARRLMILASEDIGMAGPSALQVAVA 326 DVVSAFIKS+RGSDVDAALHYLARM+ AGEDPRFIARRL++ ASEDIGMA P+ALQ AVA Sbjct 267 DVVSAFIKSIRGSDVDAALHYLARMVEAGEDPRFIARRLVVHASEDIGMADPTALQAAVA 326 Query 327 AAQTVALIGMPEAQLTLAHATIHLATAPKSNAVTTALAAAMNDIKAGKAGLVPAHLRDGH 386 A+Q V IGMPE +L LA ATIHLATAPKSNAV TA+ A+ D++AGKAG VP HLRDGH Sbjct 327 ASQAVQFIGMPEGRLALAQATIHLATAPKSNAVITAIDEALGDVRAGKAGPVPPHLRDGH 386 Query 387 YSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELVDVDYYRPTGRGGEREIAGRLDRLRAI 446 Y+GA+ LGNAQGY+Y H +GV+AQQYPP ELV DYY PTGRG ER +A R+ +LR I Sbjct 387 YAGASRLGNAQGYRYPHGRTEGVLAQQYPPSELVGRDYYNPTGRGAERTLADRVPKLRGI 446 Query 447 IR 448 IR Sbjct 447 IR 448 >gi|296394109|ref|YP_003658993.1| ATPase AAA [Segniliparus rotundus DSM 44985] gi|296181256|gb|ADG98162.1| AAA ATPase central domain protein [Segniliparus rotundus DSM 44985] Length=479 Score = 548 bits (1411), Expect = 9e-154, Method: Compositional matrix adjust. Identities = 293/434 (68%), Positives = 351/434 (81%), Gaps = 5/434 (1%) Query 20 GHDLGASAGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGSGVASVILYGPPGSGKT 79 G L ++A PLAVRMRP + EV+GQDHLL PG PLRRLV+G GVASV+L+GPPG+GKT Sbjct 30 GMALVSAAHTPLAVRMRPRDVAEVLGQDHLLGPGRPLRRLVDGHGVASVVLHGPPGTGKT 89 Query 80 TLAALISQATGRRFEALSALSAGVKEVRAVIENSRKALLHGEQTVLFIDEVHRFSKTQQD 139 T+A+L+S ATGR F ALSAL+AGVKEVR VIE+SR L G +TVLFIDEVHRFSKTQQD Sbjct 90 TIASLLSAATGREFVALSALTAGVKEVREVIEDSRMRLAAGRRTVLFIDEVHRFSKTQQD 149 Query 140 ALLSAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRPLTAEDTRAVVQRAIDDPRGL 199 ALL+AVEH++VLLVAATTENP F+VV+PLLSRSL+L+LRPL ED A++ RA++D RG Sbjct 150 ALLAAVEHQIVLLVAATTENPGFAVVSPLLSRSLVLELRPLAREDLDALISRALEDERGY 209 Query 200 GRAVAVAPEAVDLLVQLAAGDARRALTALEVAAEAAQAAGE-----LVSVQTIERSVDKA 254 G AV + +A + ++++A GDARR LTALE A + AQA E VS++ + S+D+A Sbjct 210 GGAVRLCDQAREHVLRVAGGDARRMLTALEAAVDLAQAEDEGAQTWEVSLEQVTASLDEA 269 Query 255 AVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIARRLMILASEDIG 314 VRYDRDGDQHYDVVSAFIKS+RGSDVDAALHYLARM+VAGEDPRFIARRLMI ASED+G Sbjct 270 MVRYDRDGDQHYDVVSAFIKSIRGSDVDAALHYLARMVVAGEDPRFIARRLMIHASEDVG 329 Query 315 MAGPSALQVAVAAAQTVALIGMPEAQLTLAHATIHLATAPKSNAVTTALAAAMNDIKAGK 374 MA PSAL VA AAAQ VA++G+PEA++ LA ATIHLATAPKSNAV A+ AA D++AGK Sbjct 330 MADPSALGVATAAAQAVAIVGLPEARIILAQATIHLATAPKSNAVVRAIGAAEADVRAGK 389 Query 375 AGLVPAHLRDGHYSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELVDVDYYRPTGRGGER 434 AG VP HLRDGH S A GY+Y HD +GV+AQQYPPDE+V VDYY+PT G ER Sbjct 390 AGPVPQHLRDGHSSYARKTKKTAGYRYPHDTVEGVLAQQYPPDEIVGVDYYQPTNHGFER 449 Query 435 EIAGRLDRLRAIIR 448 E+ GR+ +LRAI+R Sbjct 450 ELLGRVPKLRAIVR 463 >gi|340794485|ref|YP_004759948.1| hypothetical protein CVAR_1522 [Corynebacterium variabile DSM 44702] gi|340534395|gb|AEK36875.1| hypothetical protein CVAR_1522 [Corynebacterium variabile DSM 44702] Length=439 Score = 546 bits (1406), Expect = 4e-153, Method: Compositional matrix adjust. Identities = 285/425 (68%), Positives = 339/425 (80%), Gaps = 0/425 (0%) Query 27 AGAPLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGSGVASVILYGPPGSGKTTLAALIS 86 A APLAVRMRP +LDEVVGQ H+L SPLRRL++G G +SVILYGPPG+GKTT+A+LI+ Sbjct 15 AHAPLAVRMRPRTLDEVVGQSHVLGESSPLRRLIDGRGESSVILYGPPGTGKTTVASLIA 74 Query 87 QATGRRFEALSALSAGVKEVRAVIENSRKALLHGEQTVLFIDEVHRFSKTQQDALLSAVE 146 +GRRFEALSAL++GVKEVR+VI ++R+ L G TVLFIDEVHRFSKTQQDALLSAVE Sbjct 75 GGSGRRFEALSALNSGVKEVRSVIADARRRLADGIPTVLFIDEVHRFSKTQQDALLSAVE 134 Query 147 HRVVLLVAATTENPSFSVVAPLLSRSLILQLRPLTAEDTRAVVQRAIDDPRGLGRAVAVA 206 +R VLLVAATTENPSFSVVAPLLSRSL++QL+PL D +++RAI+DPRG + + Sbjct 135 NRTVLLVAATTENPSFSVVAPLLSRSLLVQLKPLEPADISTLLRRAIEDPRGYDGKITLT 194 Query 207 PEAVDLLVQLAAGDARRALTALEVAAEAAQAAGELVSVQTIERSVDKAAVRYDRDGDQHY 266 EA D L LAAGDARRALT LE AAE+ + +G V+V + RS DKA RYDRDGDQHY Sbjct 195 DEACDRLTALAAGDARRALTYLEAAAESVEDSGGEVTVDVVARSTDKAVARYDRDGDQHY 254 Query 267 DVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIARRLMILASEDIGMAGPSALQVAVA 326 D+VSAFIKS+RGSD DAALHYLARM+ AGEDPRFI+RRL++ ASEDIGMA P+ALQ AVA Sbjct 255 DIVSAFIKSIRGSDPDAALHYLARMIDAGEDPRFISRRLVVHASEDIGMADPTALQAAVA 314 Query 327 AAQTVALIGMPEAQLTLAHATIHLATAPKSNAVTTALAAAMNDIKAGKAGLVPAHLRDGH 386 A Q V+ IGMPE ++ LA AT+HLATA KSNAV TA+ AA+ D++ GK +VP HLRDGH Sbjct 315 AHQAVSFIGMPEGRIPLAQATVHLATAAKSNAVITAIDAALADVRDGKGSVVPPHLRDGH 374 Query 387 YSGAAALGNAQGYKYSHDDPDGVVAQQYPPDELVDVDYYRPTGRGGEREIAGRLDRLRAI 446 YSGA LGNA GY+Y H+DP GV+ Q Y PD+L D YY PT G ER+I+ LD LR I Sbjct 375 YSGAEGLGNAVGYRYPHEDPRGVLTQDYLPDDLSDAVYYNPTDHGRERQISTTLDTLRGI 434 Query 447 IRKKR 451 +R R Sbjct 435 VRGGR 439 Lambda K H 0.317 0.133 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 939989406426 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40