BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2561

Length=97
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609698|ref|NP_217077.1|  hypothetical protein Rv2561 [Mycoba...   201    4e-50
gi|289448211|ref|ZP_06437955.1|  conserved hypothetical protein [...   137    4e-31
gi|31793744|ref|NP_856237.1|  hypothetical protein Mb2591 [Mycoba...   137    4e-31
gi|254232682|ref|ZP_04926009.1|  conserved hypothetical protein [...   137    4e-31
gi|294994328|ref|ZP_06800019.1|  hypothetical protein Mtub2_07388...   137    4e-31
gi|339632589|ref|YP_004724231.1|  hypothetical protein MAF_25780 ...   136    9e-31
gi|289754679|ref|ZP_06514057.1|  LOW QUALITY PROTEIN: conserved h...   136    1e-30
gi|289746354|ref|ZP_06505732.1|  conserved hypothetical protein [...   136    1e-30
gi|148823757|ref|YP_001288511.1|  hypothetical protein TBFG_12582...   134    4e-30
gi|183981407|ref|YP_001849698.1|  hypothetical protein MMAR_1384 ...   120    5e-26
gi|118617976|ref|YP_906308.1|  hypothetical protein MUL_2491 [Myc...   117    4e-25
gi|240169639|ref|ZP_04748298.1|  hypothetical protein MkanA1_1001...   115    2e-24
gi|254818722|ref|ZP_05223723.1|  hypothetical protein MintA_02299...   114    4e-24
gi|342857373|ref|ZP_08714029.1|  hypothetical protein MCOL_00805 ...   114    5e-24
gi|41408154|ref|NP_960990.1|  hypothetical protein MAP2056c [Myco...   112    2e-23
gi|296166282|ref|ZP_06848720.1|  conserved hypothetical protein [...   111    5e-23
gi|254774844|ref|ZP_05216360.1|  hypothetical protein MaviaA2_092...   103    1e-20
gi|308378410|ref|ZP_07482502.2|  hypothetical protein TMIG_03335 ...  99.0    2e-19
gi|339295438|gb|AEJ47549.1|  hypothetical protein CCDC5079_2359 [...  99.0    2e-19
gi|310818752|ref|YP_003951110.1|  hypothetical protein STAUR_1479...  92.8    2e-17
gi|108760080|ref|YP_629900.1|  hypothetical protein MXAN_1648 [My...  91.3    5e-17
gi|338529764|ref|YP_004663098.1|  hypothetical protein LILAB_0044...  90.5    7e-17
gi|15842100|ref|NP_337137.1|  hypothetical protein MT2638 [Mycoba...  65.1    3e-09
gi|295135850|ref|YP_003586526.1|  hypothetical protein ZPR_4026 [...  49.7    1e-04
gi|305665515|ref|YP_003861802.1|  hypothetical protein FB2170_044...  45.8    0.002
gi|255037031|ref|YP_003087652.1|  hypothetical protein Dfer_3275 ...  45.1    0.004


>gi|15609698|ref|NP_217077.1| hypothetical protein Rv2561 [Mycobacterium tuberculosis H37Rv]
 gi|1460079|emb|CAB01043.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
Length=97

 Score =  201 bits (510),  Expect = 4e-50, Method: Compositional matrix adjust.
 Identities = 97/97 (100%), Positives = 97/97 (100%), Gaps = 0/97 (0%)

Query  1   MGIQRAVLLIADIGGYTNYMHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFF  60
           MGIQRAVLLIADIGGYTNYMHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFF
Sbjct  1   MGIQRAVLLIADIGGYTNYMHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFF  60

Query  61  WAPGGQHQCPGMRPAPADAPEVPHAARADQKRPSLRL  97
           WAPGGQHQCPGMRPAPADAPEVPHAARADQKRPSLRL
Sbjct  61  WAPGGQHQCPGMRPAPADAPEVPHAARADQKRPSLRL  97


>gi|289448211|ref|ZP_06437955.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289421169|gb|EFD18370.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length=245

 Score =  137 bits (346),  Expect = 4e-31, Method: Compositional matrix adjust.
 Identities = 65/66 (99%), Positives = 65/66 (99%), Gaps = 0/66 (0%)

Query  1   MGIQRAVLLIADIGGYTNYMHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFF  60
           MGIQRAVLLIADIGGYTNYMHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFF
Sbjct  1   MGIQRAVLLIADIGGYTNYMHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFF  60

Query  61  WAPGGQ  66
           WAPGG 
Sbjct  61  WAPGGN  66


>gi|31793744|ref|NP_856237.1| hypothetical protein Mb2591 [Mycobacterium bovis AF2122/97]
 gi|121638446|ref|YP_978670.1| hypothetical protein BCG_2584 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224990940|ref|YP_002645627.1| hypothetical protein JTY_2578 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|31619338|emb|CAD94776.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121494094|emb|CAL72572.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224774053|dbj|BAH26859.1| hypothetical protein JTY_2578 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|341602484|emb|CCC65160.1| conserved hypothetical protein [Mycobacterium bovis BCG str. 
Moreau RDJ]
Length=245

 Score =  137 bits (346),  Expect = 4e-31, Method: Compositional matrix adjust.
 Identities = 65/66 (99%), Positives = 65/66 (99%), Gaps = 0/66 (0%)

Query  1   MGIQRAVLLIADIGGYTNYMHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFF  60
           MGIQRAVLLIADIGGYTNYMHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFF
Sbjct  1   MGIQRAVLLIADIGGYTNYMHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFF  60

Query  61  WAPGGQ  66
           WAPGG 
Sbjct  61  WAPGGN  66


>gi|254232682|ref|ZP_04926009.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|289444098|ref|ZP_06433842.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289575270|ref|ZP_06455497.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 24 more sequence titles
 
gi|289751181|ref|ZP_06510559.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|298526035|ref|ZP_07013444.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|306780600|ref|ZP_07418937.1| hypothetical protein TMBG_01102 [Mycobacterium tuberculosis SUMu002]
 gi|306785363|ref|ZP_07423685.1| hypothetical protein TMCG_01807 [Mycobacterium tuberculosis SUMu003]
 gi|306789963|ref|ZP_07428285.1| hypothetical protein TMDG_00276 [Mycobacterium tuberculosis SUMu004]
 gi|306794043|ref|ZP_07432345.1| hypothetical protein TMEG_03238 [Mycobacterium tuberculosis SUMu005]
 gi|306798442|ref|ZP_07436744.1| hypothetical protein TMFG_03790 [Mycobacterium tuberculosis SUMu006]
 gi|306804321|ref|ZP_07440989.1| hypothetical protein TMHG_01756 [Mycobacterium tuberculosis SUMu008]
 gi|306807640|ref|ZP_07444308.1| hypothetical protein TMGG_02311 [Mycobacterium tuberculosis SUMu007]
 gi|307080661|ref|ZP_07489831.1| hypothetical protein TMKG_02991 [Mycobacterium tuberculosis SUMu011]
 gi|124601741|gb|EAY60751.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|289417017|gb|EFD14257.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289539701|gb|EFD44279.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289691768|gb|EFD59197.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|298495829|gb|EFI31123.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308326535|gb|EFP15386.1| hypothetical protein TMBG_01102 [Mycobacterium tuberculosis SUMu002]
 gi|308329956|gb|EFP18807.1| hypothetical protein TMCG_01807 [Mycobacterium tuberculosis SUMu003]
 gi|308333573|gb|EFP22424.1| hypothetical protein TMDG_00276 [Mycobacterium tuberculosis SUMu004]
 gi|308337600|gb|EFP26451.1| hypothetical protein TMEG_03238 [Mycobacterium tuberculosis SUMu005]
 gi|308341266|gb|EFP30117.1| hypothetical protein TMFG_03790 [Mycobacterium tuberculosis SUMu006]
 gi|308345961|gb|EFP34812.1| hypothetical protein TMGG_02311 [Mycobacterium tuberculosis SUMu007]
 gi|308349073|gb|EFP37924.1| hypothetical protein TMHG_01756 [Mycobacterium tuberculosis SUMu008]
 gi|308361583|gb|EFP50434.1| hypothetical protein TMKG_02991 [Mycobacterium tuberculosis SUMu011]
 gi|323718835|gb|EGB27991.1| hypothetical protein TMMG_02573 [Mycobacterium tuberculosis CDC1551A]
Length=245

 Score =  137 bits (346),  Expect = 4e-31, Method: Compositional matrix adjust.
 Identities = 65/66 (99%), Positives = 65/66 (99%), Gaps = 0/66 (0%)

Query  1   MGIQRAVLLIADIGGYTNYMHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFF  60
           MGIQRAVLLIADIGGYTNYMHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFF
Sbjct  1   MGIQRAVLLIADIGGYTNYMHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFF  60

Query  61  WAPGGQ  66
           WAPGG 
Sbjct  61  WAPGGN  66


>gi|294994328|ref|ZP_06800019.1| hypothetical protein Mtub2_07388 [Mycobacterium tuberculosis 
210]
 gi|326904176|gb|EGE51109.1| hypothetical protein TBPG_02070 [Mycobacterium tuberculosis W-148]
Length=245

 Score =  137 bits (346),  Expect = 4e-31, Method: Compositional matrix adjust.
 Identities = 65/66 (99%), Positives = 65/66 (99%), Gaps = 0/66 (0%)

Query  1   MGIQRAVLLIADIGGYTNYMHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFF  60
           MGIQRAVLLIADIGGYTNYMHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFF
Sbjct  1   MGIQRAVLLIADIGGYTNYMHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFF  60

Query  61  WAPGGQ  66
           WAPGG 
Sbjct  61  WAPGGN  66


>gi|339632589|ref|YP_004724231.1| hypothetical protein MAF_25780 [Mycobacterium africanum GM041182]
 gi|340627578|ref|YP_004746030.1| hypothetical protein MCAN_26031 [Mycobacterium canettii CIPT 
140010059]
 gi|339331945|emb|CCC27648.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
 gi|340005768|emb|CCC44934.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=98

 Score =  136 bits (343),  Expect = 9e-31, Method: Compositional matrix adjust.
 Identities = 65/66 (99%), Positives = 65/66 (99%), Gaps = 0/66 (0%)

Query  1   MGIQRAVLLIADIGGYTNYMHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFF  60
           MGIQRAVLLIADIGGYTNYMHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFF
Sbjct  1   MGIQRAVLLIADIGGYTNYMHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFF  60

Query  61  WAPGGQ  66
           WAPGG 
Sbjct  61  WAPGGN  66


>gi|289754679|ref|ZP_06514057.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium 
tuberculosis EAS054]
 gi|289758691|ref|ZP_06518069.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium 
tuberculosis T85]
 gi|289695266|gb|EFD62695.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium 
tuberculosis EAS054]
 gi|289714255|gb|EFD78267.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium 
tuberculosis T85]
Length=97

 Score =  136 bits (342),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 65/66 (99%), Positives = 65/66 (99%), Gaps = 0/66 (0%)

Query  1   MGIQRAVLLIADIGGYTNYMHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFF  60
           MGIQRAVLLIADIGGYTNYMHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFF
Sbjct  1   MGIQRAVLLIADIGGYTNYMHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFF  60

Query  61  WAPGGQ  66
           WAPGG 
Sbjct  61  WAPGGN  66


>gi|289746354|ref|ZP_06505732.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289686882|gb|EFD54370.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
Length=245

 Score =  136 bits (342),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 64/66 (97%), Positives = 64/66 (97%), Gaps = 0/66 (0%)

Query  1   MGIQRAVLLIADIGGYTNYMHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFF  60
           MGIQRAVLLIADIGGYTNYMHWNRKHLAHAQWTVAQLLESVIDA KGMKLAKLEGDAAFF
Sbjct  1   MGIQRAVLLIADIGGYTNYMHWNRKHLAHAQWTVAQLLESVIDAGKGMKLAKLEGDAAFF  60

Query  61  WAPGGQ  66
           WAPGG 
Sbjct  61  WAPGGN  66


>gi|148823757|ref|YP_001288511.1| hypothetical protein TBFG_12582 [Mycobacterium tuberculosis F11]
 gi|253798357|ref|YP_003031358.1| hypothetical protein TBMG_01411 [Mycobacterium tuberculosis KZN 
1435]
 gi|254551612|ref|ZP_05142059.1| hypothetical protein Mtube_14339 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 11 more sequence titles
 
gi|289553648|ref|ZP_06442858.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|289762732|ref|ZP_06522110.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|297635172|ref|ZP_06952952.1| hypothetical protein MtubK4_13670 [Mycobacterium tuberculosis 
KZN 4207]
 gi|297732164|ref|ZP_06961282.1| hypothetical protein MtubKR_13795 [Mycobacterium tuberculosis 
KZN R506]
 gi|313659498|ref|ZP_07816378.1| hypothetical protein MtubKV_13809 [Mycobacterium tuberculosis 
KZN V2475]
 gi|148722284|gb|ABR06909.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|253319860|gb|ACT24463.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
1435]
 gi|289438280|gb|EFD20773.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|289710238|gb|EFD74254.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|328458127|gb|AEB03550.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
4207]
 gi|344220389|gb|AEN01020.1| hypothetical protein MTCTRI2_2610 [Mycobacterium tuberculosis 
CTRI-2]
Length=245

 Score =  134 bits (338),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 64/66 (97%), Positives = 64/66 (97%), Gaps = 0/66 (0%)

Query  1   MGIQRAVLLIADIGGYTNYMHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFF  60
           MGIQRAVLLIADIGG TNYMHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFF
Sbjct  1   MGIQRAVLLIADIGGCTNYMHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFF  60

Query  61  WAPGGQ  66
           WAPGG 
Sbjct  61  WAPGGN  66


>gi|183981407|ref|YP_001849698.1| hypothetical protein MMAR_1384 [Mycobacterium marinum M]
 gi|183174733|gb|ACC39843.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=244

 Score =  120 bits (302),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 55/65 (85%), Positives = 60/65 (93%), Gaps = 0/65 (0%)

Query  1   MGIQRAVLLIADIGGYTNYMHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFF  60
           M I+RAVL IADIGGYTNYM+WNR HLAHAQW VA+LLE+VIDA KG+KLAKLEGDAAFF
Sbjct  1   MAIRRAVLAIADIGGYTNYMNWNRMHLAHAQWAVAELLEAVIDAGKGLKLAKLEGDAAFF  60

Query  61  WAPGG  65
           WAPGG
Sbjct  61  WAPGG  65


>gi|118617976|ref|YP_906308.1| hypothetical protein MUL_2491 [Mycobacterium ulcerans Agy99]
 gi|118570086|gb|ABL04837.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=213

 Score =  117 bits (294),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 54/65 (84%), Positives = 59/65 (91%), Gaps = 0/65 (0%)

Query  1   MGIQRAVLLIADIGGYTNYMHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFF  60
           M I+RAVL IA IGGYTNYM+WNR HLAHAQW VA+LLE+VIDA KG+KLAKLEGDAAFF
Sbjct  1   MAIRRAVLAIAAIGGYTNYMNWNRMHLAHAQWAVAELLEAVIDAGKGLKLAKLEGDAAFF  60

Query  61  WAPGG  65
           WAPGG
Sbjct  61  WAPGG  65


>gi|240169639|ref|ZP_04748298.1| hypothetical protein MkanA1_10017 [Mycobacterium kansasii ATCC 
12478]
Length=242

 Score =  115 bits (289),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 53/66 (81%), Positives = 59/66 (90%), Gaps = 0/66 (0%)

Query  1   MGIQRAVLLIADIGGYTNYMHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFF  60
           M ++RAVLLIADIGGYT+YM WNR HL HAQ TVA+LLE+VIDA KG+KLAKLEGDAAFF
Sbjct  1   MAVRRAVLLIADIGGYTHYMTWNRMHLVHAQQTVAELLEAVIDAGKGLKLAKLEGDAAFF  60

Query  61  WAPGGQ  66
           WAPGG 
Sbjct  61  WAPGGN  66


>gi|254818722|ref|ZP_05223723.1| hypothetical protein MintA_02299 [Mycobacterium intracellulare 
ATCC 13950]
Length=242

 Score =  114 bits (286),  Expect = 4e-24, Method: Compositional matrix adjust.
 Identities = 54/63 (86%), Positives = 58/63 (93%), Gaps = 0/63 (0%)

Query  1   MGIQRAVLLIADIGGYTNYMHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFF  60
           M I+RAVLLIADIGGYT+YM WNR HLAHAQ TVA LLESVI+AAKG+KLAKLEGDAAFF
Sbjct  1   MAIRRAVLLIADIGGYTHYMQWNRTHLAHAQLTVAGLLESVINAAKGLKLAKLEGDAAFF  60

Query  61  WAP  63
           WAP
Sbjct  61  WAP  63


>gi|342857373|ref|ZP_08714029.1| hypothetical protein MCOL_00805 [Mycobacterium colombiense CECT 
3035]
 gi|342134706|gb|EGT87872.1| hypothetical protein MCOL_00805 [Mycobacterium colombiense CECT 
3035]
Length=242

 Score =  114 bits (285),  Expect = 5e-24, Method: Compositional matrix adjust.
 Identities = 54/63 (86%), Positives = 58/63 (93%), Gaps = 0/63 (0%)

Query  1   MGIQRAVLLIADIGGYTNYMHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFF  60
           M I+RAVLLIADIGGYT+YM WNR HLAHAQ TVA LLESVI+AAKG+KLAKLEGDAAFF
Sbjct  1   MAIRRAVLLIADIGGYTHYMQWNRTHLAHAQLTVAGLLESVINAAKGLKLAKLEGDAAFF  60

Query  61  WAP  63
           WAP
Sbjct  61  WAP  63


>gi|41408154|ref|NP_960990.1| hypothetical protein MAP2056c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118462909|ref|YP_881341.1| hypothetical protein MAV_2131 [Mycobacterium avium 104]
 gi|41396509|gb|AAS04373.1| hypothetical protein MAP_2056c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118164196|gb|ABK65093.1| conserved hypothetical protein [Mycobacterium avium 104]
 gi|336461741|gb|EGO40601.1| Protein of unknown function (DUF2652) [Mycobacterium avium subsp. 
paratuberculosis S397]
Length=242

 Score =  112 bits (280),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 53/63 (85%), Positives = 57/63 (91%), Gaps = 0/63 (0%)

Query  1   MGIQRAVLLIADIGGYTNYMHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFF  60
           M I+RAVLLIADIGGYT+YM WNR HLAHAQ TVA LLESVI+A KG+KLAKLEGDAAFF
Sbjct  1   MAIRRAVLLIADIGGYTHYMQWNRTHLAHAQLTVAGLLESVINAGKGLKLAKLEGDAAFF  60

Query  61  WAP  63
           WAP
Sbjct  61  WAP  63


>gi|296166282|ref|ZP_06848720.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295898377|gb|EFG77945.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=242

 Score =  111 bits (277),  Expect = 5e-23, Method: Compositional matrix adjust.
 Identities = 51/65 (79%), Positives = 57/65 (88%), Gaps = 0/65 (0%)

Query  1   MGIQRAVLLIADIGGYTNYMHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFF  60
           M I+RAVL+IADI GYT+YM WNR HLAHAQ TVA LLESVID+ +G+KLAKLEGDAAFF
Sbjct  1   MAIRRAVLVIADISGYTHYMQWNRTHLAHAQLTVAGLLESVIDSGRGLKLAKLEGDAAFF  60

Query  61  WAPGG  65
           WAP G
Sbjct  61  WAPDG  65


>gi|254774844|ref|ZP_05216360.1| hypothetical protein MaviaA2_09255 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=236

 Score =  103 bits (256),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 48/57 (85%), Positives = 52/57 (92%), Gaps = 0/57 (0%)

Query  7   VLLIADIGGYTNYMHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFFWAP  63
           +LLIADIGGYT+YM WNR HLAHAQ TVA LLESVI+A KG+KLAKLEGDAAFFWAP
Sbjct  1   MLLIADIGGYTHYMQWNRTHLAHAQLTVAGLLESVINAGKGLKLAKLEGDAAFFWAP  57


>gi|308378410|ref|ZP_07482502.2| hypothetical protein TMIG_03335 [Mycobacterium tuberculosis SUMu009]
 gi|308379242|ref|ZP_07485611.2| hypothetical protein TMJG_01542 [Mycobacterium tuberculosis SUMu010]
 gi|308352650|gb|EFP41501.1| hypothetical protein TMIG_03335 [Mycobacterium tuberculosis SUMu009]
 gi|308357641|gb|EFP46492.1| hypothetical protein TMJG_01542 [Mycobacterium tuberculosis SUMu010]
Length=226

 Score = 99.0 bits (245),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 46/47 (98%), Positives = 46/47 (98%), Gaps = 0/47 (0%)

Query  20  MHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFFWAPGGQ  66
           MHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFFWAPGG 
Sbjct  1   MHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFFWAPGGN  47


>gi|339295438|gb|AEJ47549.1| hypothetical protein CCDC5079_2359 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339299058|gb|AEJ51168.1| hypothetical protein CCDC5180_2331 [Mycobacterium tuberculosis 
CCDC5180]
Length=226

 Score = 99.0 bits (245),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 46/47 (98%), Positives = 46/47 (98%), Gaps = 0/47 (0%)

Query  20  MHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFFWAPGGQ  66
           MHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFFWAPGG 
Sbjct  1   MHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFFWAPGGN  47


>gi|310818752|ref|YP_003951110.1| hypothetical protein STAUR_1479 [Stigmatella aurantiaca DW4/3-1]
 gi|309391824|gb|ADO69283.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
Length=240

 Score = 92.8 bits (229),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 46/64 (72%), Positives = 54/64 (85%), Gaps = 0/64 (0%)

Query  1   MGIQRAVLLIADIGGYTNYMHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFF  60
           M +++A+LLIADIGGYT +M  +R  LAHAQ TVAQLLE VIDAA G+KLAKLEGDAAFF
Sbjct  1   MAVEKALLLIADIGGYTRFMKQHRFGLAHAQDTVAQLLEVVIDAAGGLKLAKLEGDAAFF  60

Query  61  WAPG  64
           +A G
Sbjct  61  YALG  64


>gi|108760080|ref|YP_629900.1| hypothetical protein MXAN_1648 [Myxococcus xanthus DK 1622]
 gi|108463960|gb|ABF89145.1| conserved hypothetical protein [Myxococcus xanthus DK 1622]
Length=241

 Score = 91.3 bits (225),  Expect = 5e-17, Method: Compositional matrix adjust.
 Identities = 45/64 (71%), Positives = 54/64 (85%), Gaps = 0/64 (0%)

Query  1   MGIQRAVLLIADIGGYTNYMHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFF  60
           M I++A+LLIADIGGYT +M  +R  LAHAQ TVAQLLE+VIDA+  +KLAKLEGDAAFF
Sbjct  1   MAIEKALLLIADIGGYTRFMSHHRFSLAHAQETVAQLLEAVIDASGPLKLAKLEGDAAFF  60

Query  61  WAPG  64
           +A G
Sbjct  61  YAVG  64


>gi|338529764|ref|YP_004663098.1| hypothetical protein LILAB_00440 [Myxococcus fulvus HW-1]
 gi|337255860|gb|AEI62020.1| hypothetical protein LILAB_00440 [Myxococcus fulvus HW-1]
Length=241

 Score = 90.5 bits (223),  Expect = 7e-17, Method: Compositional matrix adjust.
 Identities = 45/64 (71%), Positives = 54/64 (85%), Gaps = 0/64 (0%)

Query  1   MGIQRAVLLIADIGGYTNYMHWNRKHLAHAQWTVAQLLESVIDAAKGMKLAKLEGDAAFF  60
           M I++A+LLIADIGGYT +M  +R  LAHAQ TVAQLLE+VIDA+  +KLAKLEGDAAFF
Sbjct  1   MAIEKALLLIADIGGYTRFMSHHRFSLAHAQETVAQLLEAVIDASGPLKLAKLEGDAAFF  60

Query  61  WAPG  64
           +A G
Sbjct  61  YAVG  64


>gi|15842100|ref|NP_337137.1| hypothetical protein MT2638 [Mycobacterium tuberculosis CDC1551]
 gi|19864230|sp|Q50737.2|Y2561_MYCTU RecName: Full=Uncharacterized protein Rv2561/Rv2562/MT2638
 gi|13882382|gb|AAK46951.1| hypothetical protein MT2638 [Mycobacterium tuberculosis CDC1551]
Length=212

 Score = 65.1 bits (157),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 31/33 (94%), Positives = 32/33 (97%), Gaps = 0/33 (0%)

Query  34  VAQLLESVIDAAKGMKLAKLEGDAAFFWAPGGQ  66
           +AQLLESVIDAAKGMKLAKLEGDAAFFWAPGG 
Sbjct  1   MAQLLESVIDAAKGMKLAKLEGDAAFFWAPGGN  33


>gi|295135850|ref|YP_003586526.1| hypothetical protein ZPR_4026 [Zunongwangia profunda SM-A87]
 gi|294983865|gb|ADF54330.1| conserved hypothetical protein [Zunongwangia profunda SM-A87]
Length=192

 Score = 49.7 bits (117),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 25/62 (41%), Positives = 42/62 (68%), Gaps = 3/62 (4%)

Query  2   GIQRAVLLIADIGGYTNYMHWNRKHLAHAQWTVAQLLESVIDAAK-GMKLAKLEGDAAFF  60
           GI   +LLI DI G+T Y+  N   L ++Q T+A LLE+++   K G++++++EGDA  F
Sbjct  4   GIMPGLLLIPDITGFTKYI--NEADLQYSQITIALLLEAILKNNKLGLQVSEIEGDAILF  61

Query  61  WA  62
           ++
Sbjct  62  YS  63


>gi|305665515|ref|YP_003861802.1| hypothetical protein FB2170_04430 [Maribacter sp. HTCC2170]
 gi|88710271|gb|EAR02503.1| hypothetical protein FB2170_04430 [Maribacter sp. HTCC2170]
Length=360

 Score = 45.8 bits (107),  Expect = 0.002, Method: Composition-based stats.
 Identities = 22/60 (37%), Positives = 40/60 (67%), Gaps = 3/60 (5%)

Query  3   IQRAVLLIADIGGYTNYMHWNRKHLAHAQWTVAQLLESVIDA-AKGMKLAKLEGDAAFFW  61
           + +++L I DI G+T ++      + H+Q  +A+LLE +I A  + ++LA++EGDA FF+
Sbjct  1   MAKSLLFIPDISGFTEFVQ--TTEVEHSQHVIAELLEVLISANTQDLQLAEVEGDALFFY  58


>gi|255037031|ref|YP_003087652.1| hypothetical protein Dfer_3275 [Dyadobacter fermentans DSM 18053]
 gi|254949787|gb|ACT94487.1| hypothetical protein Dfer_3275 [Dyadobacter fermentans DSM 18053]
Length=359

 Score = 45.1 bits (105),  Expect = 0.004, Method: Composition-based stats.
 Identities = 20/65 (31%), Positives = 41/65 (64%), Gaps = 3/65 (4%)

Query  5   RAVLLIADIGGYTNYMHWNRKHLAHAQWTVAQLLESVIDAAK-GMKLAKLEGDAAFFWAP  63
           + ++ I DI G+T +MH     + H +  + +LLE++++A + G++++++EGDA  F+  
Sbjct  4   KGLIFIPDISGFTRFMH--ETEIEHGRQIIQELLETLVNANQIGLEISEIEGDAILFFKF  61

Query  64  GGQHQ  68
           G   Q
Sbjct  62  GQAPQ  66



Lambda     K      H
   0.322    0.134    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 130655526400


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40