BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2571c
Length=355
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609708|ref|NP_217087.1| transmembrane alanine and valine an... 696 0.0
gi|121638456|ref|YP_978680.1| putative transmembrane alanine and... 693 0.0
gi|340627588|ref|YP_004746040.1| putative transmembrane alanine ... 691 0.0
gi|289762742|ref|ZP_06522120.1| hypothetical alanine, valine and... 437 2e-120
gi|240173265|ref|ZP_04751923.1| transmembrane alanine and valine... 404 1e-110
gi|183982173|ref|YP_001850464.1| transmembrane alanine and valin... 352 6e-95
gi|296170797|ref|ZP_06852368.1| transmembrane alanine and valine... 283 4e-74
gi|41407164|ref|NP_960000.1| hypothetical protein MAP1066 [Mycob... 281 1e-73
gi|118466958|ref|YP_882623.1| hypothetical protein MAV_3441 [Myc... 272 5e-71
gi|254775888|ref|ZP_05217404.1| hypothetical protein MaviaA2_146... 272 5e-71
gi|336461505|gb|EGO40373.1| putative membrane protein [Mycobacte... 272 7e-71
gi|342858614|ref|ZP_08715269.1| hypothetical protein MCOL_07051 ... 271 1e-70
gi|118465125|ref|YP_884052.1| hypothetical protein MAV_4931 [Myc... 268 7e-70
gi|254777369|ref|ZP_05218885.1| hypothetical protein MaviaA2_222... 260 2e-67
gi|41409777|ref|NP_962613.1| hypothetical protein MAP3679 [Mycob... 249 5e-64
gi|300788406|ref|YP_003768697.1| hypothetical protein AMED_6567 ... 168 1e-39
gi|254823289|ref|ZP_05228290.1| hypothetical protein MintA_25399... 161 1e-37
gi|284047326|ref|YP_003397666.1| membrane protein-like protein [... 109 5e-22
gi|291441754|ref|ZP_06581144.1| predicted protein [Streptomyces ... 107 2e-21
gi|296119022|ref|ZP_06837595.1| putative membrane protein [Coryn... 107 4e-21
gi|134103598|ref|YP_001109259.1| hypothetical protein SACE_7176 ... 106 5e-21
gi|294633325|ref|ZP_06711884.1| PE-PGRS family protein [Streptom... 105 2e-20
gi|296138252|ref|YP_003645495.1| hypothetical protein Tpau_0515 ... 103 5e-20
gi|72163212|ref|YP_290869.1| hypothetical protein Tfu_2813 [Ther... 100 3e-19
gi|108805176|ref|YP_645113.1| hypothetical protein Rxyl_2373 [Ru... 99.8 5e-19
gi|330470384|ref|YP_004408127.1| membrane protein [Verrucosispor... 99.4 7e-19
gi|229492963|ref|ZP_04386758.1| conserved hypothetical protein [... 97.1 4e-18
gi|226304904|ref|YP_002764862.1| hypothetical protein RER_14150 ... 96.3 7e-18
gi|84496630|ref|ZP_00995484.1| hypothetical protein JNB_03885 [J... 96.3 8e-18
gi|312141295|ref|YP_004008631.1| integral membrane protein [Rhod... 95.5 1e-17
gi|325673871|ref|ZP_08153561.1| hypothetical protein HMPREF0724_... 95.1 1e-17
gi|343928556|ref|ZP_08768003.1| hypothetical protein GOALK_118_0... 95.1 2e-17
gi|226365023|ref|YP_002782806.1| hypothetical protein ROP_56140 ... 94.4 2e-17
gi|336321921|ref|YP_004601889.1| membrane protein-like protein [... 94.0 4e-17
gi|317509471|ref|ZP_07967087.1| pyridoxamine 5'-phosphate oxidas... 93.6 5e-17
gi|239985697|ref|ZP_04706361.1| hypothetical protein SrosN1_0017... 92.8 8e-17
gi|108805952|ref|YP_645889.1| hypothetical protein Rxyl_3171 [Ru... 92.8 8e-17
gi|238061341|ref|ZP_04606050.1| membrane protein [Micromonospora... 92.4 9e-17
gi|326333162|ref|ZP_08199410.1| putative membrane protein [Nocar... 92.4 9e-17
gi|326384113|ref|ZP_08205796.1| hypothetical protein SCNU_14319 ... 91.7 2e-16
gi|227547854|ref|ZP_03977903.1| membrane protein family protein ... 91.7 2e-16
gi|111020302|ref|YP_703274.1| hypothetical protein RHA1_ro03313 ... 90.9 3e-16
gi|271969899|ref|YP_003344095.1| membrane protein [Streptosporan... 89.0 1e-15
gi|229821892|ref|YP_002883418.1| hypothetical protein Bcav_3414 ... 89.0 1e-15
gi|296392549|ref|YP_003657433.1| hypothetical protein Srot_0111 ... 86.7 5e-15
gi|213965157|ref|ZP_03393355.1| conserved hypothetical protein [... 86.3 7e-15
gi|337291693|ref|YP_004630714.1| hypothetical protein CULC22_020... 84.3 2e-14
gi|334697664|gb|AEG82461.1| putative membrane protein [Corynebac... 84.3 3e-14
gi|300780372|ref|ZP_07090228.1| conserved hypothetical protein [... 84.3 3e-14
gi|19553961|ref|NP_601963.1| hypothetical protein NCgl2672 [Cory... 84.0 3e-14
>gi|15609708|ref|NP_217087.1| transmembrane alanine and valine and leucine rich protein [Mycobacterium
tuberculosis H37Rv]
gi|15842109|ref|NP_337146.1| hypothetical protein MT2647 [Mycobacterium tuberculosis CDC1551]
gi|31793754|ref|NP_856247.1| transmembrane alanine and valine and leucine rich protein [Mycobacterium
bovis AF2122/97]
76 more sequence titles
Length=355
Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/355 (100%), Positives = 355/355 (100%), Gaps = 0/355 (0%)
Query 1 MSASLLVRTACGGRAVAQRLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVC 60
MSASLLVRTACGGRAVAQRLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVC
Sbjct 1 MSASLLVRTACGGRAVAQRLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVC 60
Query 61 MSATNVLRARRAQQMIVGVALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVA 120
MSATNVLRARRAQQMIVGVALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVA
Sbjct 61 MSATNVLRARRAQQMIVGVALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVA 120
Query 121 QGLMFINQAAVSAVLVLVFASNGSVVFERLFDALVGGGLAIVFSILLFPPDPVVMLCSAR 180
QGLMFINQAAVSAVLVLVFASNGSVVFERLFDALVGGGLAIVFSILLFPPDPVVMLCSAR
Sbjct 121 QGLMFINQAAVSAVLVLVFASNGSVVFERLFDALVGGGLAIVFSILLFPPDPVVMLCSAR 180
Query 181 ADVLAAVRDILAELVNTVSDPTSAPPDWPMAAADRLHQQLNGLIEVRANAAMVARRAPRR 240
ADVLAAVRDILAELVNTVSDPTSAPPDWPMAAADRLHQQLNGLIEVRANAAMVARRAPRR
Sbjct 181 ADVLAAVRDILAELVNTVSDPTSAPPDWPMAAADRLHQQLNGLIEVRANAAMVARRAPRR 240
Query 241 WGVRSTVRDLDQQAVYLALLVSSVLHLARTIAGPGGDKLPTPVHAVLTDLAAGTGLADAD 300
WGVRSTVRDLDQQAVYLALLVSSVLHLARTIAGPGGDKLPTPVHAVLTDLAAGTGLADAD
Sbjct 241 WGVRSTVRDLDQQAVYLALLVSSVLHLARTIAGPGGDKLPTPVHAVLTDLAAGTGLADAD 300
Query 301 PTAANEHAAAARATASTLQSAACGSNEVVRADIVQACVTDLQRVIERPGPSGMSA 355
PTAANEHAAAARATASTLQSAACGSNEVVRADIVQACVTDLQRVIERPGPSGMSA
Sbjct 301 PTAANEHAAAARATASTLQSAACGSNEVVRADIVQACVTDLQRVIERPGPSGMSA 355
>gi|121638456|ref|YP_978680.1| putative transmembrane alanine and valine and leucine rich protein
[Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|121494104|emb|CAL72582.1| Probable transmembrane alanine and valine and leucine rich protein
[Mycobacterium bovis BCG str. Pasteur 1173P2]
Length=355
Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/355 (99%), Positives = 354/355 (99%), Gaps = 0/355 (0%)
Query 1 MSASLLVRTACGGRAVAQRLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVC 60
MSASLLVRTACGGRAVAQRLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVC
Sbjct 1 MSASLLVRTACGGRAVAQRLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVC 60
Query 61 MSATNVLRARRAQQMIVGVALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVA 120
MSATNVL ARRAQQMIVGVALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVA
Sbjct 61 MSATNVLCARRAQQMIVGVALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVA 120
Query 121 QGLMFINQAAVSAVLVLVFASNGSVVFERLFDALVGGGLAIVFSILLFPPDPVVMLCSAR 180
QGLMFINQAAVSAVLVLVFASNGSVVFERLFDALVGGGLAIVFSILLFPPDPVVMLCSAR
Sbjct 121 QGLMFINQAAVSAVLVLVFASNGSVVFERLFDALVGGGLAIVFSILLFPPDPVVMLCSAR 180
Query 181 ADVLAAVRDILAELVNTVSDPTSAPPDWPMAAADRLHQQLNGLIEVRANAAMVARRAPRR 240
ADVLAAVRDILAELVNTVSDPTSAPPDWPMAAADRLHQQLNGLIEVRANAAMVARRAPRR
Sbjct 181 ADVLAAVRDILAELVNTVSDPTSAPPDWPMAAADRLHQQLNGLIEVRANAAMVARRAPRR 240
Query 241 WGVRSTVRDLDQQAVYLALLVSSVLHLARTIAGPGGDKLPTPVHAVLTDLAAGTGLADAD 300
WGVRSTVRDLDQQAVYLALLVSSVLHLARTIAGPGGDKLPTPVHAVLTDLAAGTGLADAD
Sbjct 241 WGVRSTVRDLDQQAVYLALLVSSVLHLARTIAGPGGDKLPTPVHAVLTDLAAGTGLADAD 300
Query 301 PTAANEHAAAARATASTLQSAACGSNEVVRADIVQACVTDLQRVIERPGPSGMSA 355
PTAANEHAAAARATASTLQSAACGSNEVVRADIVQACVTDLQRVIERPGPSGMSA
Sbjct 301 PTAANEHAAAARATASTLQSAACGSNEVVRADIVQACVTDLQRVIERPGPSGMSA 355
>gi|340627588|ref|YP_004746040.1| putative transmembrane alanine and valine and leucine rich protein
[Mycobacterium canettii CIPT 140010059]
gi|340005778|emb|CCC44944.1| putative transmembrane alanine and valine and leucine rich protein
[Mycobacterium canettii CIPT 140010059]
Length=355
Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/355 (99%), Positives = 354/355 (99%), Gaps = 0/355 (0%)
Query 1 MSASLLVRTACGGRAVAQRLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVC 60
MSASLLVRTACGGRAVAQRLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVC
Sbjct 1 MSASLLVRTACGGRAVAQRLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVC 60
Query 61 MSATNVLRARRAQQMIVGVALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVA 120
MSATNVLRARRAQQMIVGVALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVA
Sbjct 61 MSATNVLRARRAQQMIVGVALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVA 120
Query 121 QGLMFINQAAVSAVLVLVFASNGSVVFERLFDALVGGGLAIVFSILLFPPDPVVMLCSAR 180
QGLMFINQAAVSAVLVLVFASNGSVVFERLFDALVGGGLAIVFSILLFPPDPVVMLCSAR
Sbjct 121 QGLMFINQAAVSAVLVLVFASNGSVVFERLFDALVGGGLAIVFSILLFPPDPVVMLCSAR 180
Query 181 ADVLAAVRDILAELVNTVSDPTSAPPDWPMAAADRLHQQLNGLIEVRANAAMVARRAPRR 240
ADVLAAVRDILAEL NTVSDPTSAPPDWPMAAADRLHQQLNGLIEVRA+AAMVARRAPRR
Sbjct 181 ADVLAAVRDILAELANTVSDPTSAPPDWPMAAADRLHQQLNGLIEVRASAAMVARRAPRR 240
Query 241 WGVRSTVRDLDQQAVYLALLVSSVLHLARTIAGPGGDKLPTPVHAVLTDLAAGTGLADAD 300
WGVRSTVRDLDQQAVYLALLVSSVLHLARTIAGPGGD+LPTPVHAVLTDLAAGTGLADAD
Sbjct 241 WGVRSTVRDLDQQAVYLALLVSSVLHLARTIAGPGGDELPTPVHAVLTDLAAGTGLADAD 300
Query 301 PTAANEHAAAARATASTLQSAACGSNEVVRADIVQACVTDLQRVIERPGPSGMSA 355
PTAANEHAAAARATASTLQSAACGSNEVVRADIVQACVTDLQRVIERPGPSGMSA
Sbjct 301 PTAANEHAAAARATASTLQSAACGSNEVVRADIVQACVTDLQRVIERPGPSGMSA 355
>gi|289762742|ref|ZP_06522120.1| hypothetical alanine, valine and leucine rich transmembrane protein
[Mycobacterium tuberculosis GM 1503]
gi|289710248|gb|EFD74264.1| hypothetical alanine, valine and leucine rich transmembrane protein
[Mycobacterium tuberculosis GM 1503]
Length=222
Score = 437 bits (1123), Expect = 2e-120, Method: Compositional matrix adjust.
Identities = 221/222 (99%), Positives = 222/222 (100%), Gaps = 0/222 (0%)
Query 134 VLVLVFASNGSVVFERLFDALVGGGLAIVFSILLFPPDPVVMLCSARADVLAAVRDILAE 193
+LVLVFASNGSVVFERLFDALVGGGLAIVFSILLFPPDPVVMLCSARADVLAAVRDILAE
Sbjct 1 MLVLVFASNGSVVFERLFDALVGGGLAIVFSILLFPPDPVVMLCSARADVLAAVRDILAE 60
Query 194 LVNTVSDPTSAPPDWPMAAADRLHQQLNGLIEVRANAAMVARRAPRRWGVRSTVRDLDQQ 253
LVNTVSDPTSAPPDWPMAAADRLHQQLNGLIEVRANAAMVARRAPRRWGVRSTVRDLDQQ
Sbjct 61 LVNTVSDPTSAPPDWPMAAADRLHQQLNGLIEVRANAAMVARRAPRRWGVRSTVRDLDQQ 120
Query 254 AVYLALLVSSVLHLARTIAGPGGDKLPTPVHAVLTDLAAGTGLADADPTAANEHAAAARA 313
AVYLALLVSSVLHLARTIAGPGGDKLPTPVHAVLTDLAAGTGLADADPTAANEHAAAARA
Sbjct 121 AVYLALLVSSVLHLARTIAGPGGDKLPTPVHAVLTDLAAGTGLADADPTAANEHAAAARA 180
Query 314 TASTLQSAACGSNEVVRADIVQACVTDLQRVIERPGPSGMSA 355
TASTLQSAACGSNEVVRADIVQACVTDLQRVIERPGPSGMSA
Sbjct 181 TASTLQSAACGSNEVVRADIVQACVTDLQRVIERPGPSGMSA 222
>gi|240173265|ref|ZP_04751923.1| transmembrane alanine and valine and leucine rich protein [Mycobacterium
kansasii ATCC 12478]
Length=343
Score = 404 bits (1039), Expect = 1e-110, Method: Compositional matrix adjust.
Identities = 215/342 (63%), Positives = 258/342 (76%), Gaps = 1/342 (0%)
Query 10 ACGGRAVAQRLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATNVLRA 69
A GG A QRLR V+WPITQTSV AGLAWYLTHDV +H Q FFAPISAVVCMSATNVLRA
Sbjct 2 ADGGPAAVQRLRAVVWPITQTSVAAGLAWYLTHDVLHHRQPFFAPISAVVCMSATNVLRA 61
Query 70 RRAQQMIVGVALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMFINQA 129
RRA QMI+GVALGIVLGAGVHALLG+GP M V VF+AL VAVL RG +AQGLMF+NQ
Sbjct 62 RRAAQMIIGVALGIVLGAGVHALLGTGPTTMAVAVFVALCVAVLSGRGFIAQGLMFVNQT 121
Query 130 AVSAVLVLVFASNGSVVFERLFDALVGGGLAIVFSILLFPPDPVVMLCSARADVLAAVRD 189
AVS+VLVLVFA VV ERLFDA++GGGLA+VF++LLFPPDPV +LC ARADVLAA+R+
Sbjct 122 AVSSVLVLVFADTAGVVAERLFDAVIGGGLALVFAVLLFPPDPVQILCDARADVLAALRE 181
Query 190 ILAELVNTVSDPTSAPPDWPMAAADRLHQQLNGLIEVRANAAMVARRAPRRWGVRSTVRD 249
L E+ + + DP+ A DWPM+A DRLH QL L E R A+VA RAPRRW R+T+
Sbjct 182 TLVEVADMLEDPSRAASDWPMSAFDRLHDQLTRLAEAR-TTAVVATRAPRRWTARNTLLG 240
Query 250 LDQQAVYLALLVSSVLHLARTIAGPGGDKLPTPVHAVLTDLAAGTGLADADPTAANEHAA 309
++QQ+ LA+LVS VL L+R + ++P P+H LT+LAAG +AD +P AA+ HA
Sbjct 241 IEQQSARLAMLVSGVLQLSRAVTRLHRGQVPRPLHIALTELAAGMAVADDEPAAASAHAT 300
Query 310 AARATASTLQSAACGSNEVVRADIVQACVTDLQRVIERPGPS 351
AAR A L++ A N+VV ADIV C DLQ +I+ P P+
Sbjct 301 AARDRAWELEAGARDKNQVVLADIVCVCADDLQELIDLPSPA 342
>gi|183982173|ref|YP_001850464.1| transmembrane alanine and valine and leucine rich protein [Mycobacterium
marinum M]
gi|183175499|gb|ACC40609.1| transmembrane alanine and valine and leucine rich protein [Mycobacterium
marinum M]
Length=352
Score = 352 bits (902), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 216/349 (62%), Positives = 251/349 (72%), Gaps = 0/349 (0%)
Query 1 MSASLLVRTACGGRAVAQRLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVC 60
M SLL R A G A ++LRT LWPITQ SV AGLAW+LTHDV +HPQ FFAPISA VC
Sbjct 1 MEISLLTRAADGSLAAVRQLRTALWPITQASVTAGLAWFLTHDVLDHPQPFFAPISAAVC 60
Query 61 MSATNVLRARRAQQMIVGVALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVA 120
MSATNVLRARRA QM+ GVALGIV+GAGV A+LG+GP AMGV VF ALSVAVL RG VA
Sbjct 61 MSATNVLRARRAVQMVGGVALGIVVGAGVQAVLGTGPTAMGVAVFAALSVAVLAVRGFVA 120
Query 121 QGLMFINQAAVSAVLVLVFASNGSVVFERLFDALVGGGLAIVFSILLFPPDPVVMLCSAR 180
QGLMF+NQ AVSAVLVLVFA G VV ERLFDAL+GGGLA+V ++LLFP DPV +L AR
Sbjct 121 QGLMFVNQTAVSAVLVLVFAPTGDVVAERLFDALIGGGLALVVAMLLFPADPVRILRDAR 180
Query 181 ADVLAAVRDILAELVNTVSDPTSAPPDWPMAAADRLHQQLNGLIEVRANAAMVARRAPRR 240
LAA+ D L E++ + +P A PDW +A DRLH QL GLIE RA A +V+RRAPRR
Sbjct 181 TGALAALHDTLVEVIKFIDNPGGAAPDWLLATFDRLHNQLGGLIEARATAVLVSRRAPRR 240
Query 241 WGVRSTVRDLDQQAVYLALLVSSVLHLARTIAGPGGDKLPTPVHAVLTDLAAGTGLADAD 300
W R + D+++Q+ L +LVS VL+L R I ++P PV L +LAA +AD +
Sbjct 241 WAARDAIADIERQSARLGMLVSGVLNLVRAITRLPEQQVPRPVRIALAELAAALAVADDE 300
Query 301 PTAANEHAAAARATASTLQSAACGSNEVVRADIVQACVTDLQRVIERPG 349
P AA HAAAAR A L S A EVV ADIV AC DLQRVI+ PG
Sbjct 301 PAAAIAHAAAARDRAQELLSQARDRTEVVLADIVDACGVDLQRVIDVPG 349
>gi|296170797|ref|ZP_06852368.1| transmembrane alanine and valine and leucine rich protein [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295894533|gb|EFG74271.1| transmembrane alanine and valine and leucine rich protein [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length=347
Score = 283 bits (723), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 173/340 (51%), Positives = 221/340 (65%), Gaps = 8/340 (2%)
Query 14 RAVAQRLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATNVLRARRAQ 73
RA ++RLR V + + QT+ AGL+WYL HDV HPQ FFAPI+A V +S +NVLRA+RA
Sbjct 5 RAGSKRLRVVWFNLVQTATAAGLSWYLAHDVLAHPQPFFAPIAAAVSLSTSNVLRAQRAV 64
Query 74 QMIVGVALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMFINQAAVSA 133
QM+VGV LGI LG+ V ALLG G + + + +AL AV G + G+MF NQ VSA
Sbjct 65 QMMVGVTLGIGLGSAVQALLGPGAVPIAIAALVALGAAVFIGGGFIGHGMMFANQTVVSA 124
Query 134 VLVLVFASNGSVVFERLFDALVGGGLAIVFSILLFPPDPVVMLCSARADVLAAVRDILAE 193
+LVL +G V ER+FDAL+GG +AIVF++LLFP DP+ +L +AR VL + D+LA
Sbjct 125 ILVLALYRSG-VGLERIFDALIGGAVAIVFAVLLFPADPMTVLRTARVGVLGVLHDVLAR 183
Query 194 LVNTVSDPTSAPPDWPMAAADRLHQQLNGLIEVRANAAMVARRAPRRWGVRSTVRDLDQQ 253
+ + T+ PPDWP+ A DR+H+QL+GL+E R A V APRRWG+R T+ D Q
Sbjct 184 AADVAAGRTAPPPDWPLTAVDRVHEQLSGLLEARTTARHVVAIAPRRWGLRDTLEAADHQ 243
Query 254 AVYLALLVSSVLHLARTIAGP-------GGDKLPTPVHAVLTDLAAGTGLADADPTAANE 306
AV++ALL SVL LAR +A GG+ PVH VL LAA T LAD DP A
Sbjct 244 AVHVALLAGSVLQLARAVAPNVPANGVGGGEGFAQPVHTVLVVLAAATALADRDPAGACA 303
Query 307 HAAAARATASTLQSAACGSNEVVRADIVQACVTDLQRVIE 346
+ A+AR AS LQS G + AD V ACV DLQRVI+
Sbjct 304 YTASARRHASELQSGVHGKAQSTLADAVSACVDDLQRVID 343
>gi|41407164|ref|NP_960000.1| hypothetical protein MAP1066 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41395515|gb|AAS03383.1| hypothetical protein MAP_1066 [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=352
Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 178/347 (52%), Positives = 226/347 (66%), Gaps = 6/347 (1%)
Query 6 LVRTACGGRAVAQRLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATN 65
LVRTA RA +RL V + + QTS+ AGL+WYL HDV +HPQ FFAPI+A V +S +N
Sbjct 9 LVRTAV--RAGGKRLGAVWFNLLQTSLAAGLSWYLAHDVLDHPQPFFAPIAAAVSLSTSN 66
Query 66 VLRARRAQQMIVGVALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMF 125
VLRA+RA QM++GV LGI LG V +LG G + + V +AL AV G + G+MF
Sbjct 67 VLRAQRAVQMMIGVTLGIGLGTVVQGMLGPGALPIAVAAPVALGAAVFIGGGFIGHGMMF 126
Query 126 INQAAVSAVLVLVFASNGSVVFERLFDALVGGGLAIVFSILLFPPDPVVMLCSARADVLA 185
NQ VSA+LVL G+ ER+FDAL+GG +AIV ++LLFP DP +L +ARA VLA
Sbjct 127 ANQTVVSALLVLALYRGGAGP-ERIFDALIGGAVAIVVAVLLFPADPRTVLGAARAGVLA 185
Query 186 AVRDILAELVNTVSDPTSAPPDWPMAAADRLHQQLNGLIEVRANAAMVARRAPRRWGVRS 245
+ D+L+ + S +APPDWP++A DR+H+QL+GL+E R A V APRRWG+R
Sbjct 186 VLHDVLSRAADVSSGRRAAPPDWPLSAVDRVHEQLSGLLEARTTAWHVVAIAPRRWGLRD 245
Query 246 TVRDLDQQAVYLALLVSSVLHLARTIAGPGGDKLPTPVHAVLTDLAAGTGLADADPTAAN 305
VR D QAV++ALL SVL LAR +A GD+ PV VL LAA T LAD DP A
Sbjct 246 AVRAADHQAVHVALLAGSVLQLARAVAPGPGDRQGQPVSTVLLVLAAATALADRDPAGAC 305
Query 306 EHAAAARATASTLQSAACGSNE--VVRADIVQACVTDLQRVIE-RPG 349
+ +AR A+ L+S G E V AD V ACV DLQRVI+ RPG
Sbjct 306 VYLGSARRHAARLRSGDGGDREPHVALADAVGACVDDLQRVIDLRPG 352
>gi|118466958|ref|YP_882623.1| hypothetical protein MAV_3441 [Mycobacterium avium 104]
gi|118168245|gb|ABK69142.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=352
Score = 272 bits (696), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 178/347 (52%), Positives = 226/347 (66%), Gaps = 6/347 (1%)
Query 6 LVRTACGGRAVAQRLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATN 65
LVRTA RA +RL V + + QTS+ AGL+WYL HDV +HPQ FFAPI+A V +S +N
Sbjct 9 LVRTAA--RAGGKRLGAVWFNLLQTSLAAGLSWYLAHDVLDHPQPFFAPIAAAVSLSTSN 66
Query 66 VLRARRAQQMIVGVALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMF 125
VLRA+RA QM++GV LGI LG V +LG G + + V +AL AV G + G+MF
Sbjct 67 VLRAQRAVQMMIGVTLGIGLGTVVQGMLGPGALPIAVAALVALGAAVFIGGGFIGHGMMF 126
Query 126 INQAAVSAVLVLVFASNGSVVFERLFDALVGGGLAIVFSILLFPPDPVVMLCSARADVLA 185
NQ VSA+LVL G+ ER+FDAL+GG +AIV ++LLFP DP +L +ARA VLA
Sbjct 127 ANQTVVSALLVLALYRGGAGP-ERIFDALIGGAVAIVVAVLLFPADPRTVLGAARAGVLA 185
Query 186 AVRDILAELVNTVSDPTSAPPDWPMAAADRLHQQLNGLIEVRANAAMVARRAPRRWGVRS 245
+ D+L+ + S +APPDWP++A DR+H+QL+GL+E R A V APRRWG+R
Sbjct 186 VLHDVLSRAADVSSGRRAAPPDWPLSAVDRVHEQLSGLLEARTTARHVVAIAPRRWGLRD 245
Query 246 TVRDLDQQAVYLALLVSSVLHLARTIAGPGGDKLPTPVHAVLTDLAAGTGLADADPTAAN 305
VR D QAV++ALL SVL LAR +A GD+ PV VL LAA T LAD DP A
Sbjct 246 AVRAADHQAVHVALLAGSVLQLARAVAPGPGDRQGQPVSTVLLVLAAATALADRDPAGAC 305
Query 306 EHAAAARATASTLQSAACGSNE--VVRADIVQACVTDLQRVIE-RPG 349
+ +AR A+ L+S G E V AD V ACV DLQRVI+ RPG
Sbjct 306 VYLGSARRHAARLRSGDGGDREPHVALADAVGACVDDLQRVIDLRPG 352
>gi|254775888|ref|ZP_05217404.1| hypothetical protein MaviaA2_14630 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=352
Score = 272 bits (696), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 178/347 (52%), Positives = 226/347 (66%), Gaps = 6/347 (1%)
Query 6 LVRTACGGRAVAQRLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATN 65
LVRTA RA +RL V + + QTS+ AGL+WYL HDV +HPQ FFAPI+A V +S +N
Sbjct 9 LVRTAV--RAGGKRLGAVWFNLLQTSLAAGLSWYLAHDVLDHPQPFFAPIAAAVSLSTSN 66
Query 66 VLRARRAQQMIVGVALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMF 125
VLRA+RA QM++GV LGI LG V +LG G + + V +AL AV G + G+MF
Sbjct 67 VLRAQRAVQMMIGVTLGIGLGTVVQGMLGPGALPIAVAALVALGAAVFIGGGFIGHGMMF 126
Query 126 INQAAVSAVLVLVFASNGSVVFERLFDALVGGGLAIVFSILLFPPDPVVMLCSARADVLA 185
NQ VSA+LVL G+ ER+FDAL+GG +AIV ++LLFP DP +L +ARA VLA
Sbjct 127 ANQTVVSALLVLALYRGGAGP-ERIFDALIGGAVAIVVAVLLFPADPRTVLGAARAGVLA 185
Query 186 AVRDILAELVNTVSDPTSAPPDWPMAAADRLHQQLNGLIEVRANAAMVARRAPRRWGVRS 245
+ D+L+ + S +APPDWP++A DR+H+QL+GL+E R A V APRRWG+R
Sbjct 186 VLHDVLSRAADVSSGRRAAPPDWPLSAVDRVHEQLSGLLEARTTARHVVAIAPRRWGLRD 245
Query 246 TVRDLDQQAVYLALLVSSVLHLARTIAGPGGDKLPTPVHAVLTDLAAGTGLADADPTAAN 305
VR D QAV++ALL SVL LAR +A GD+ PV VL LAA T LAD DP A
Sbjct 246 AVRAADHQAVHVALLAGSVLQLARAVAPGPGDRQGQPVSTVLLVLAAATALADRDPAGAC 305
Query 306 EHAAAARATASTLQSAACGSNE--VVRADIVQACVTDLQRVIE-RPG 349
+ +AR A+ L+S G E V AD V ACV DLQRVI+ RPG
Sbjct 306 VYLGSARRHAARLRSGDGGDREPHVALADAVGACVDDLQRVIDLRPG 352
>gi|336461505|gb|EGO40373.1| putative membrane protein [Mycobacterium avium subsp. paratuberculosis
S397]
Length=352
Score = 272 bits (695), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 178/347 (52%), Positives = 226/347 (66%), Gaps = 6/347 (1%)
Query 6 LVRTACGGRAVAQRLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATN 65
LVRTA RA +RL V + + QTS+ AGL+WYL HDV +HPQ FFAPI+A V +S +N
Sbjct 9 LVRTAV--RAGGKRLGAVWFNLLQTSLAAGLSWYLAHDVLDHPQPFFAPIAAAVSLSTSN 66
Query 66 VLRARRAQQMIVGVALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMF 125
VLRA+RA QM++GV LGI LG V +LG G + + V +AL AV G + G+MF
Sbjct 67 VLRAQRAVQMMIGVTLGIGLGTVVQGMLGPGALPIAVAALVALGAAVFIGGGFIGHGMMF 126
Query 126 INQAAVSAVLVLVFASNGSVVFERLFDALVGGGLAIVFSILLFPPDPVVMLCSARADVLA 185
NQ VSA+LVL G+ ER+FDAL+GG +AIV ++LLFP DP +L +ARA VLA
Sbjct 127 ANQTVVSALLVLALYRGGAGP-ERIFDALIGGAVAIVVAVLLFPADPRTVLGAARAGVLA 185
Query 186 AVRDILAELVNTVSDPTSAPPDWPMAAADRLHQQLNGLIEVRANAAMVARRAPRRWGVRS 245
+ D+L+ + S +APPDWP++A DR+H+QL+GL+E R A V APRRWG+R
Sbjct 186 VLHDVLSRAADVSSGRRAAPPDWPLSAVDRVHEQLSGLLEARTTAWHVVAIAPRRWGLRD 245
Query 246 TVRDLDQQAVYLALLVSSVLHLARTIAGPGGDKLPTPVHAVLTDLAAGTGLADADPTAAN 305
VR D QAV++ALL SVL LAR +A GD+ PV VL LAA T LAD DP A
Sbjct 246 AVRAADHQAVHVALLAGSVLQLARAVAPGPGDRQGQPVSTVLLVLAAATALADRDPAGAC 305
Query 306 EHAAAARATASTLQSAACGSNE--VVRADIVQACVTDLQRVIE-RPG 349
+ +AR A+ L+S G E V AD V ACV DLQRVI+ RPG
Sbjct 306 VYLGSARRHAARLRSGDGGDREPHVALADAVGACVDDLQRVIDLRPG 352
>gi|342858614|ref|ZP_08715269.1| hypothetical protein MCOL_07051 [Mycobacterium colombiense CECT
3035]
gi|342134318|gb|EGT87498.1| hypothetical protein MCOL_07051 [Mycobacterium colombiense CECT
3035]
Length=362
Score = 271 bits (693), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 167/340 (50%), Positives = 222/340 (66%), Gaps = 8/340 (2%)
Query 14 RAVAQRLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATNVLRARRAQ 73
RA ++RLR V + + QT+V AGL+WYL HDV HPQ FFAPI+A V +S +NVLRA+RA
Sbjct 17 RAGSKRLRPVWFNLVQTAVAAGLSWYLAHDVLEHPQPFFAPIAAAVSLSTSNVLRAQRAI 76
Query 74 QMIVGVALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMFINQAAVSA 133
QM++GV LGI +G+ ALLG+G + + V +AL AV G + G+MF NQ VSA
Sbjct 77 QMMIGVTLGIGVGSLAQALLGAGDVPIAVAALVALGAAVFIGGGFIGHGMMFANQTVVSA 136
Query 134 VLVLVFASNGSVVFERLFDALVGGGLAIVFSILLFPPDPVVMLCSARADVLAAVRDILAE 193
+LVL G V ER+FDAL+GG +AIVF+++LFP DP+ +L +AR VL + D+L+
Sbjct 137 ILVLAL-YRGGVGLERIFDALIGGAVAIVFAVVLFPADPLKVLRNARVGVLGVLHDVLSR 195
Query 194 LVNTVSDPTSAPPDWPMAAADRLHQQLNGLIEVRANAAMVARRAPRRWGVRSTVRDLDQQ 253
+ PPDWP+ A DR+H+QL+GL+E R A V APRRW +R+ +R D Q
Sbjct 196 AADVAVGRKEPPPDWPLTAVDRVHEQLSGLLEARTTARHVVTIAPRRWRLRTAIRAADHQ 255
Query 254 AVYLALLVSSVLHLARTIA-GP------GGDKLPTPVHAVLTDLAAGTGLADADPTAANE 306
AV++ALL SVL LAR ++ GP G +++P V VL LAA LAD DP A
Sbjct 256 AVHVALLAGSVLQLARAVSPGPDPSPEGGRERVPQSVPTVLVVLAAAIALADTDPAGACA 315
Query 307 HAAAARATASTLQSAACGSNEVVRADIVQACVTDLQRVIE 346
+ A+AR A+ LQS A +VV AD+V ACV DLQRVI+
Sbjct 316 YTASARHHAADLQSGARERTQVVLADVVSACVDDLQRVID 355
>gi|118465125|ref|YP_884052.1| hypothetical protein MAV_4931 [Mycobacterium avium 104]
gi|118166412|gb|ABK67309.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=336
Score = 268 bits (686), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 157/334 (48%), Positives = 211/334 (64%), Gaps = 10/334 (2%)
Query 16 VAQRLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATNVLRARRAQQM 75
+A+RLR LWPI QT+V AGLAWYL HDV +H + FFAPI+A VC+ TN +RA A +M
Sbjct 4 LARRLRRTLWPIAQTTVAAGLAWYLAHDVLDHREPFFAPIAAAVCLWMTNRVRAELAVEM 63
Query 76 IVGVALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMFINQAAVSAVL 135
I+GVALGI G V A+ G+GPI MG V ++L++AVL AR Q MF+NQ+ +SA+L
Sbjct 64 IIGVALGIGAGTVVLAVFGAGPIGMGAAVMLSLTLAVLIARSFSTQRSMFVNQSVISAIL 123
Query 136 VLVFASNGSVVFERLFDALVGGGLAIVFSILLFPPDPVVMLCSARADVLAAVRDILAELV 195
++ F G V ERL+DAL+GGGLA+VFSILLFP +P+ +L A ++L A+ DILA++
Sbjct 124 IMAFPHTGLGV-ERLYDALIGGGLAVVFSILLFPKNPLAVLHDASGELLTALHDILAQIC 182
Query 196 NTVSDPTSAPPDWPMAAADRLHQQLNGLIEVRANAAMVARRAPRRWGVRSTVRDLDQQAV 255
+D S W ++AADRL + LIE R A +AR PRRW +R V D+QAV
Sbjct 183 CRSTDSASPDQGWALSAADRLQRCSASLIEARGTAGQLARVCPRRWPLRGAVGAADRQAV 242
Query 256 YLALLVSSVLHLARTIAG---PGGDKLPTPVHAVLTDLA-AGTGLADADPTAANEHAAAA 311
++AL SSVL LART+ PGG + A + DL A + LA P A HA +A
Sbjct 243 HVALFGSSVLQLARTLTSVRIPGGPHVEA-FRAAVDDLRDAVSALAAGHPETAAAHAESA 301
Query 312 RATASTLQSAACGSNEVVRADIVQACVTDLQRVI 345
R ++ L + + S VV + AC+ +LQ I
Sbjct 302 RRHSAALPAGSPASVAVV----IDACIDELQHAI 331
>gi|254777369|ref|ZP_05218885.1| hypothetical protein MaviaA2_22251 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=325
Score = 260 bits (665), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 152/326 (47%), Positives = 205/326 (63%), Gaps = 10/326 (3%)
Query 24 LWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATNVLRARRAQQMIVGVALGI 83
+WPI QT+V AGLAWYL HDV +H + FFAPI+A VC+ TN +RA A +MI+GVALGI
Sbjct 1 MWPIAQTTVAAGLAWYLAHDVLDHREPFFAPIAAAVCLWMTNRVRAELAVEMIIGVALGI 60
Query 84 VLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMFINQAAVSAVLVLVFASNG 143
G V A+ G+GPI MG V ++L++AVL AR Q MF+NQ+ +SA+L++ F G
Sbjct 61 GAGTVVLAVFGAGPIGMGAAVMLSLTLAVLIARSFSTQRSMFVNQSVISAILIMAFPHTG 120
Query 144 SVVFERLFDALVGGGLAIVFSILLFPPDPVVMLCSARADVLAAVRDILAELVNTVSDPTS 203
V ERL+DAL+GGGLA+VFSILLFP +P+ +L A ++L A+ DILA++ +D S
Sbjct 121 LGV-ERLYDALIGGGLAVVFSILLFPKNPLAVLHDASGELLTALHDILAQICCRSTDSAS 179
Query 204 APPDWPMAAADRLHQQLNGLIEVRANAAMVARRAPRRWGVRSTVRDLDQQAVYLALLVSS 263
W ++AADRL + LIE R A +AR PRRW +R V D+QAV++AL SS
Sbjct 180 PDQGWALSAADRLQRCSASLIEARGTAGQLARVCPRRWPLRGAVGAADRQAVHVALFGSS 239
Query 264 VLHLARTIAG---PGGDKLPTPVHAVLTDLA-AGTGLADADPTAANEHAAAARATASTLQ 319
VL LART+ PGG + A + DL A + LA P A HA +AR ++ L
Sbjct 240 VLQLARTLTSVRIPGGPHVEA-FRAAVDDLRDAVSALAAGHPETAAAHAESARRHSAALP 298
Query 320 SAACGSNEVVRADIVQACVTDLQRVI 345
+ + S VV + AC+ +LQ I
Sbjct 299 AGSPASVAVV----IDACIDELQHAI 320
>gi|41409777|ref|NP_962613.1| hypothetical protein MAP3679 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41398609|gb|AAS06229.1| hypothetical protein MAP_3679 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336460094|gb|EGO39002.1| putative membrane protein [Mycobacterium avium subsp. paratuberculosis
S397]
Length=336
Score = 249 bits (636), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 154/337 (46%), Positives = 209/337 (63%), Gaps = 16/337 (4%)
Query 16 VAQRLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATNVLRARRAQQM 75
+A+RLR LWPI QT+V AGLAWYL HDV +H + FFAPI+A VC+ TN +RA A +M
Sbjct 4 LARRLRRTLWPIAQTTVAAGLAWYLAHDVLDHREPFFAPIAAAVCLWMTNRVRAELAVEM 63
Query 76 IVGVALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMFINQAAVSAVL 135
I+GVALGI G V A+ G+GPI MG V ++L++AVL AR Q MF+NQ+ +SA+L
Sbjct 64 IIGVALGIGAGTVVLAVFGAGPIGMGAAVMLSLTLAVLIARSFSTQRSMFVNQSLISAIL 123
Query 136 VLVFASNGSVVFERLFDALVGGGLAIVFSILLFPPDPVVMLCSARADVLAAVRDILAELV 195
++ F G V ERL+DAL+GGGLA+VFSILLFP +P+ +L A ++L A+ DILA++
Sbjct 124 IMAFPHTGLGV-ERLYDALIGGGLAVVFSILLFPKNPLAVLHDASGELLTALHDILAQIC 182
Query 196 NTVSDPTSAPPDWPMAAADRLHQQLNGLIEVRANAAMVARRAPRRWGVRSTVRDLDQQAV 255
+D S W ++AADRL + LIE R A +AR PRRW +R V D+Q V
Sbjct 183 CRSADSASPDQGWALSAADRLQRCSASLIEARGTAGQLARVCPRRWPLRGAVGAADRQVV 242
Query 256 YLALLVSSVLHLARTI------AGPGGDKLPTPVHAVLTDLA-AGTGLADADPTAANEHA 308
++AL SSVL L RT+ GP + A + DL A + LA P A HA
Sbjct 243 HVALFGSSVLQLTRTLMSVRIRGGPHAEAF----RAAVDDLRDADSALAAGHPATAAAHA 298
Query 309 AAARATASTLQSAACGSNEVVRADIVQACVTDLQRVI 345
+AR ++ L + + S VV + AC+ +LQ+ I
Sbjct 299 ESARRHSAALPAGSPASVAVV----IDACIDELQQAI 331
>gi|300788406|ref|YP_003768697.1| hypothetical protein AMED_6567 [Amycolatopsis mediterranei U32]
gi|299797920|gb|ADJ48295.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
gi|340530004|gb|AEK45209.1| hypothetical protein RAM_33680 [Amycolatopsis mediterranei S699]
Length=352
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 118/282 (42%), Positives = 165/282 (59%), Gaps = 6/282 (2%)
Query 14 RAVAQRLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATNVLRARRAQ 73
RAVA R R W + QT+V ++W++ HD+ HPQ FFAPI+A V +SA++VLR +RA
Sbjct 3 RAVAGRFRRARWSVLQTAVAVSVSWFVAHDLLGHPQPFFAPIAAAVSLSASDVLRGQRAV 62
Query 74 QMIVGVALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMFINQAAVSA 133
Q++ GVALGI+LG V A+ G+ A V +A+ A+ G QGLMF+NQ A SA
Sbjct 63 QLMSGVALGILLGTAVEAVAGTAAPAFAVAALLAMYAALAFGGGPFGQGLMFVNQTAASA 122
Query 134 VLVLVFASNGSVVFERLFDALVGGGLAIVFSILLFPPDPVVMLCSARADVLAAVRDILAE 193
+L+L GS ERL DAL+GGG+ +V +LL P DP +L A V AAVRD LA+
Sbjct 123 ILILALHRPGSGT-ERLVDALIGGGVVVVIGVLLVPADPHRLLDDAARGVFAAVRDALAD 181
Query 194 LVNTVSD-PTSAPPDWPMAAADRLHQQLNGLIEVRANAAMVARRAPRRWGVRSTVRDLDQ 252
L + V++ PD +A R+H +L L + R A V APRRW R +V
Sbjct 182 LRDEVAEGRRDQDPDRELALGQRIHSRLAALTQARGTARQVVLVAPRRWRSRQSVHRAIA 241
Query 253 QAVYLALLVSSVLHLARTIAG---PGGDKLPTPVHAVLTDLA 291
++ YL L ++ L L R +AG G++LP + + +LA
Sbjct 242 RSKYLTLYANAALSLVR-VAGAALASGEELPRTLREAVAELA 282
>gi|254823289|ref|ZP_05228290.1| hypothetical protein MintA_25399 [Mycobacterium intracellulare
ATCC 13950]
Length=176
Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/166 (54%), Positives = 114/166 (69%), Gaps = 1/166 (0%)
Query 8 RTACGGRAVAQRLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATNVL 67
R RA +RLR V + + QTS AG++WYLTHDV HPQ FFAPI+A V +S +NVL
Sbjct 11 RVLAAARAGGKRLRAVWFNLVQTSAAAGVSWYLTHDVLGHPQPFFAPIAAAVSLSTSNVL 70
Query 68 RARRAQQMIVGVALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMFIN 127
RA+RA QM++GV LGI LG+ V LLG G + + + FIAL AV G + G+MF N
Sbjct 71 RAQRAIQMMIGVTLGIGLGSAVQGLLGPGAVPIAIAAFIALGAAVFIGGGFIGHGMMFAN 130
Query 128 QAAVSAVLVLVFASNGSVVFERLFDALVGGGLAIVFSILLFPPDPV 173
Q VSA+LVL +G V ER+FDAL+GG +AIVF++LLFP DP+
Sbjct 131 QTIVSAILVLAL-YHGGVGLERIFDALIGGAVAIVFAVLLFPADPL 175
>gi|284047326|ref|YP_003397666.1| membrane protein-like protein [Conexibacter woesei DSM 14684]
gi|283951547|gb|ADB54291.1| membrane protein-like protein [Conexibacter woesei DSM 14684]
Length=371
Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 71/176 (41%), Positives = 103/176 (59%), Gaps = 14/176 (7%)
Query 26 PITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATNVLRARRAQQMIVGVALGIVL 85
PI Q S+ AG+AW + DVF H + FFAPISA++C+ AT V R RR ++++GV LGI +
Sbjct 16 PIAQASLAAGVAWLIATDVFGHQRPFFAPISAIICLGATYVERGRRTVELMIGVTLGIAV 75
Query 86 GAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMFINQAAVSAVLVLVFA-SNGS 144
G + A +G G + +V+ +A++ AV V G + + QAAVSA+LV+ +
Sbjct 76 GDLLIAGIGVGTWQLMLVIALAMATAV-----FVGGGPILVTQAAVSAILVVTLQPPDQG 130
Query 145 VVFERLFDALVGGGLAIVFSILLFPPDPVVMLCSARADVLAAVRDILAELVNTVSD 200
+ + R+ DA GG L I SILL P DP+ + AR VR +L EL + D
Sbjct 131 IYWGRMIDAFTGGLLGIAVSILL-PVDPLAL---AR----RTVRPLLDELAGALDD 178
>gi|291441754|ref|ZP_06581144.1| predicted protein [Streptomyces ghanaensis ATCC 14672]
gi|291344649|gb|EFE71605.1| predicted protein [Streptomyces ghanaensis ATCC 14672]
Length=424
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/273 (32%), Positives = 141/273 (52%), Gaps = 14/273 (5%)
Query 25 WPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATNVLRARRAQQMIVGVALGIV 84
W Q + A AW + F+HP +FAPI+A+ ++A R +A +++ GV LG+V
Sbjct 57 WLHLQATASATAAWLVARYGFDHPAPYFAPIAAMNALTANLGERGLQAVRLLQGVVLGLV 116
Query 85 LGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMFINQAAVSAVLVLVFASNGS 144
+G V +G+GP +M + +F+AL+ A V + + QAAVSA+LV+ +
Sbjct 117 VGELVLLTVGAGPGSMALGIFVALTAA-----HAVRSPQIVVVQAAVSAILVVAVGDKAN 171
Query 145 VVFERLFDALVGGGLAIVFSILLFPPDPVVMLCSARADVLAAVRDILAELVNTVSDPTSA 204
+RL D L G G+A+VF+ +LFPP+P+ +L A + LA++ D L+ ++
Sbjct 172 -GLDRLVDVLTGAGIALVFTQVLFPPEPLALLRRAEKEALASIADGLSATAEAIARDDDE 230
Query 205 PPDWPMAAADRLHQQLNGLIEVRANAAMVARRAPRRWGVRSTVRDLDQQAVYLALLVSSV 264
+ + +L L V + V+RRA W + VR+ + + +L LL +S
Sbjct 231 LAGKAVGELRDVRDRLAELRRVGRASTNVSRRA-LVWRAKVVVRE-RESSEHLDLLGASC 288
Query 265 LHLARTIAGPGGD---KLPTPVHA---VLTDLA 291
L LAR ++ G D + PV VLT LA
Sbjct 289 LTLARLVSSAGSDTRGRFQQPVRELTDVLTSLA 321
>gi|296119022|ref|ZP_06837595.1| putative membrane protein [Corynebacterium ammoniagenes DSM 20306]
gi|295968120|gb|EFG81372.1| putative membrane protein [Corynebacterium ammoniagenes DSM 20306]
Length=394
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 80/285 (29%), Positives = 141/285 (50%), Gaps = 15/285 (5%)
Query 14 RAVAQRLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATNVLRARRAQ 73
R+ R+RT I Q ++ AGLA+++ HD HPQ FFAP+S V+ + + R R+
Sbjct 27 RSRVNRVRTRFPYIVQATIGAGLAYWVAHDFVGHPQPFFAPMSVVIILGLSGGDRLSRSF 86
Query 74 QMIVGVALGIVLGAGV-HALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMFINQAAVS 132
+M +G LG+ LG + H+ G+GP+ + ++V +AL + ++ + ++ NQ +
Sbjct 87 EMAIGGVLGVALGDLLFHSTSGTGPLQITLIVLVALILG-----SILTKSVLVSNQIVIG 141
Query 133 AVLVLVF----ASNGSVVFERLFDALVGGGLAIVFSILLFPPDPVVMLCSARADVLAAVR 188
++L+ SNG ER DAL+G + I+ +I L P P+ + + VLA +
Sbjct 142 SILIATILPPDVSNGG--LERAIDALIGCVIGII-TIALLPNSPLTNGRNEISKVLAIIS 198
Query 189 DILAELVNTVSDPTSAPPDWPMAAADRLHQQLNGLIEVRANAAMVARRAPRRWGVRSTVR 248
+L ++V + + SA D M A + ++N ++ + V +P W R +R
Sbjct 199 SVLDDVVEGLRERDSAIIDQAMDAVNNSQAEINSMLAAAKSGKEVTNVSPLMWSSRRQLR 258
Query 249 DLDQQAVYLALLVSSVLHLART--IAGPGGDKLPTPVHAVLTDLA 291
++ + V V LAR + GDK+ +L +LA
Sbjct 259 SFERMLEPVGNCVRLVQVLARRAGVLCEDGDKVSEKQIELLEELA 303
>gi|134103598|ref|YP_001109259.1| hypothetical protein SACE_7176 [Saccharopolyspora erythraea NRRL
2338]
gi|291004866|ref|ZP_06562839.1| hypothetical protein SeryN2_10130 [Saccharopolyspora erythraea
NRRL 2338]
gi|133916221|emb|CAM06334.1| hypothetical protein SACE_7176 [Saccharopolyspora erythraea NRRL
2338]
Length=355
Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 106/329 (33%), Positives = 160/329 (49%), Gaps = 20/329 (6%)
Query 26 PITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATNVLRARRAQQMIVGVALGIVL 85
PI Q +V AGLAW L +V HPQ FFAPI+AV+ + + R RRA +++VGV++GI +
Sbjct 10 PIVQCAVAAGLAWALAKNVIGHPQPFFAPIAAVISLGVSLGQRMRRALELVVGVSIGIGV 69
Query 86 GAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMFINQAAVSAVLVLVF---ASN 142
G + +++G+G + +VV +A+S AVL G V + QAA S+VLV AS
Sbjct 70 GDILISVIGTGWWQIALVVALAMSTAVLLDSGGV-----IVLQAASSSVLVATLLPPASA 124
Query 143 GSVVFERLFDALVGGGLAIVFSILLFPPDPVVMLCSARADVLAAVRDILAELVNTVSDPT 202
G + R+ DA VGG + V + LL P +P+ + VL A+ D L + V+
Sbjct 125 GGLT--RMIDAAVGGLVGFVVAALL-PANPLTVAHRNGRVVLGALADALRGVAGAVARLD 181
Query 203 SAPPDWPMAAADRLHQQLNGLIEVRANAAMVARRAPRRWGVRSTVRDLDQQAVYLALLVS 262
+A +AAA + + + +AR AP RW R + + A + +
Sbjct 182 TAMASNVLAAARKSQRSVEEFRSALEAGREIARFAPIRWRRRGDLERYETAATPIDRALR 241
Query 263 SVLHLART--IAGPGGDKLPTPVHAVLTDLAAGTGL------ADADPTAANEHA-AAARA 313
+ LAR A G+ +P P+ +L +LA L + +P A E A A AR
Sbjct 242 NTRVLARRALAALQDGEPVPRPLPGLLEELAGAVVLLRDELASGVEPLQARETARAVARK 301
Query 314 TASTLQSAACGSNEVVRADIVQACVTDLQ 342
+ L S +VV + V LQ
Sbjct 302 STVELLGEGDFSMQVVVLQVRSIAVDLLQ 330
>gi|294633325|ref|ZP_06711884.1| PE-PGRS family protein [Streptomyces sp. e14]
gi|292831106|gb|EFF89456.1| PE-PGRS family protein [Streptomyces sp. e14]
Length=365
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/248 (35%), Positives = 129/248 (53%), Gaps = 7/248 (2%)
Query 24 LWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATNVLRARRAQQMIVGVALGI 83
LWP+ Q +V A L+W++ V +H Q FAPI+ +V ++ R A + + GV G+
Sbjct 5 LWPVAQQTVAATLSWWIARHVIHHHQPVFAPITTLVALNTARGGRGTNAVRFVAGVVAGV 64
Query 84 VLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMFINQAAVSAVLVLVFASNG 143
++ ALLG G + + VF+A+ A++ V + + QAAVSAV+ + +
Sbjct 65 LVAEAAVALLGPGYPTIALAVFLAILAALV-----VGGERVTMAQAAVSAVIAV--GTGI 117
Query 144 SVVFERLFDALVGGGLAIVFSILLFPPDPVVMLCSARADVLAAVRDILAELVNTVSDPTS 203
R+ DAL+G G+A+VFS LLFP P+ +L A + LA + + LA V V +
Sbjct 118 QAGSNRVVDALLGAGVALVFSQLLFPAHPLALLRRAESGTLADLAEALALTVRAVDGGDA 177
Query 204 APPDWPMAAADRLHQQLNGLIEVRANAAMVARRAPRRWGVRSTVRDLDQQAVYLALLVSS 263
+W + +L L E RA+A ARR+P WG R V + A L LL +S
Sbjct 178 GQREWTWEHLRAAYARLAELGEARADAGTAARRSPVWWGRREPVERESRYAAGLDLLGAS 237
Query 264 VLHLARTI 271
L L RT+
Sbjct 238 CLTLTRTV 245
>gi|296138252|ref|YP_003645495.1| hypothetical protein Tpau_0515 [Tsukamurella paurometabola DSM
20162]
gi|296026386|gb|ADG77156.1| conserved hypothetical protein [Tsukamurella paurometabola DSM
20162]
Length=388
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 104/318 (33%), Positives = 160/318 (51%), Gaps = 17/318 (5%)
Query 18 QRLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATNVLRARRAQQMIV 77
+RL + PI Q ++ AGLAWY+ DV H FFAPI+AV+ + + R RR+ +++
Sbjct 32 RRLWSSKLPILQCALAAGLAWYIAKDVVGHVSPFFAPIAAVISLGLSLNQRLRRSLELVG 91
Query 78 GVALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMFINQAAVSAVLVL 137
GV +GI +G + + +G+GP + +VV IA+SVAVL R G + QAA SAVL+
Sbjct 92 GVTVGIGVGDLLVSQIGTGPWQLALVVAIAMSVAVLADR-----GPLVPMQAASSAVLIA 146
Query 138 VFASNGSVV-FERLFDALVGGGLAIVFSILLFPPDPVVMLCSARADVLAAVRDILAELVN 196
GS + R+ DAL+GG + ++ + L+ P +P A VL +R ++A +
Sbjct 147 TLLPPGSAASWNRMLDALIGGLVGVIIAALI-PNNPARRPRKDAAKVLDTMRRVVASIAA 205
Query 197 TVSDPTSAPPDWPMAAADRLHQQLNGLIEVRANAAMVARRAPRRWGVRSTVRDLDQQAVY 256
++D A DW + A L+ L A +A+ +P W R + L A
Sbjct 206 GLTDGDRASLDWALETARSTQPDLDQLTADLAGGIEIAKVSPVFWSSRGRMDRLQAIADP 265
Query 257 LALLVSSVLHLART--IAGPGGDKLPTPVHAVLTDLAAG-TGLAD---ADPTAANEHAAA 310
L V +V +AR + +K+ + + LA L D ADP A + A A
Sbjct 266 LDNAVRNVRVMARRAIASNQEAEKIDPALVTEIGRLAESFKTLRDVVLADPGAKPDQADA 325
Query 311 ARATASTLQSAACGSNEV 328
AR L+SAA +NE+
Sbjct 326 AR----VLRSAARRANEL 339
>gi|72163212|ref|YP_290869.1| hypothetical protein Tfu_2813 [Thermobifida fusca YX]
gi|71916944|gb|AAZ56846.1| similar to membrane protein [Thermobifida fusca YX]
Length=431
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/179 (37%), Positives = 103/179 (58%), Gaps = 7/179 (3%)
Query 15 AVAQRLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATNVLRARRAQQ 74
AV RL WPI V +AW L ++ FFAPI+AV+ ++A+ R A +
Sbjct 22 AVRDRLTENFWPIVHAVVAGTVAWLLAKNLTATRMPFFAPIAAVIALNASASERGANAVR 81
Query 75 MIVGVALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMFINQAAVSAV 134
+++GV +GI++G ALLG+G A+ + +A+++A+ +V + I QAAVSA+
Sbjct 82 LLLGVVIGILVGELTIALLGTGYRALAFAIGLAMALAI-----VVNFARLVIGQAAVSAM 136
Query 135 LVLVFASNGSVVFERLFDALVGGGLAIVFSILLFPPDPVVMLCSARADVLAAVRDILAE 193
L++ FA S RL DAL+G G+A++ S LLFP V +L A A+ LA + +L +
Sbjct 137 LIVTFAEEAS--LHRLADALIGAGVALIISQLLFPVRVVAILRRAEANALAEMARMLDD 193
>gi|108805176|ref|YP_645113.1| hypothetical protein Rxyl_2373 [Rubrobacter xylanophilus DSM
9941]
gi|108766419|gb|ABG05301.1| membrane protein-like protein [Rubrobacter xylanophilus DSM 9941]
Length=378
Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/157 (41%), Positives = 96/157 (62%), Gaps = 7/157 (4%)
Query 17 AQRLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATNVLRARRAQQMI 76
A+RLR W + QTS AGLA+++ + + Q FFAPI+AV+ + T R RRA +
Sbjct 25 ARRLRNHGWAVVQTSAAAGLAYFVAAFLLGNDQPFFAPIAAVISLGLTIGQRGRRAFETS 84
Query 77 VGVALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMFINQAAVSAVLV 136
+GVALG+V+ + +G+GPI + A+ + A ++ + + +NQAA+SA+LV
Sbjct 85 IGVALGLVVADLLVLAIGTGPIQI-----TAVVALAMAAALMIGERTLLVNQAAISAILV 139
Query 137 LVFAS-NGSVVFERLFDALVGGGLAIVFSILLFPPDP 172
+V S GS +RL +ALVGGG+A+ + LFP DP
Sbjct 140 IVLQSPEGSFSPDRLINALVGGGVALAIN-YLFPVDP 175
>gi|330470384|ref|YP_004408127.1| membrane protein [Verrucosispora maris AB-18-032]
gi|328813355|gb|AEB47527.1| membrane protein [Verrucosispora maris AB-18-032]
Length=410
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 77/235 (33%), Positives = 123/235 (53%), Gaps = 14/235 (5%)
Query 18 QRLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATNVLRARRAQQMIV 77
R+R L Q + AGL+W H++ +PQ FAPISAV ++ + R RR ++I+
Sbjct 39 HRVRMSLALAVQAGLAAGLSWVAAHELLGNPQPVFAPISAVGTLAVSVGQRFRRTVELII 98
Query 78 GVALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMFINQAAVSAVLVL 137
GVA+G+ +G + LG+GP + +VV +A+ + + G VA + QAA +AVL++
Sbjct 99 GVAVGVAVGDILVHFLGTGPWQLALVVTVAILLTIFAG-GSVA----IVIQAAATAVLIV 153
Query 138 VFASN-GSVVFERLFDALVGGGLAIVFSILLFPPDPVVMLCSARADVLAAVRDILAELVN 196
+ ++ R DA VGGG+A++ + +L P +P+ +L A L D+LA+ ++
Sbjct 154 TLSPTVEALEIPRFVDAFVGGGIALLVTAILLPLNPLRVLNRAARPAL----DLLADQLD 209
Query 197 TVSDPTSA-PPDWPMAAADRLHQ---QLNGLIEVRANAAMVARRAPRRWGVRSTV 247
+D A D A DRL +L L E A A +P RW RS +
Sbjct 210 AAADGLRARDRDKVQTALDRLRDNKAELATLTEAIEGAKETALLSPARWHRRSEL 264
>gi|229492963|ref|ZP_04386758.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|229319993|gb|EEN85819.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=381
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 85/244 (35%), Positives = 131/244 (54%), Gaps = 19/244 (7%)
Query 14 RAVAQRLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATNVLRARRAQ 73
R +RL+T PI Q ++ AGLAW++ V H FFAPI+AVV + + R RR+
Sbjct 19 RKSVRRLQTSALPIIQCALAAGLAWWVATTVIGHHAPFFAPIAAVVSLGLSLGARLRRSF 78
Query 74 QMIVGVALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMFINQAAVSA 133
+++ GV +GI +G + + +GSGP + +VV +A+SVAV L+ G +F QA SA
Sbjct 79 ELVAGVTVGIGIGDLIISGIGSGPWQISLVVVLAMSVAV-----LLNSGPIFSMQAGNSA 133
Query 134 VLV-LVFASNGSVVFERLFDALVGG--GLAIVFSILLFPPDPVVMLCSARADVLAAVRDI 190
VLV + GS +R+ DALVGG G+A+V + P PV AR D A++
Sbjct 134 VLVATLIPPGGSGGPDRMIDALVGGLVGIAVVA---IIPTHPV---RRARKDA-ASILGT 186
Query 191 LAELVNTVSDPTSAPPDWPMAAADRLHQQLNGLIE-VRAN---AAMVARRAPRRWGVRST 246
+E++ V+D A P+ A + + G I+ +R+N ++R +P W R
Sbjct 187 ASEVLQLVADGLVANDPDPIVKALQKARATQGAIDGLRSNLLGGREISRISPLYWNSRPR 246
Query 247 VRDL 250
+ L
Sbjct 247 LERL 250
>gi|226304904|ref|YP_002764862.1| hypothetical protein RER_14150 [Rhodococcus erythropolis PR4]
gi|226184019|dbj|BAH32123.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length=360
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 84/240 (35%), Positives = 130/240 (55%), Gaps = 19/240 (7%)
Query 18 QRLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATNVLRARRAQQMIV 77
+RL+T PI Q ++ AGLAW++ V H FFAPI+AVV + + R RR+ +++
Sbjct 2 RRLQTSALPIIQCALAAGLAWWVATTVIGHHAPFFAPIAAVVSLGLSLGARLRRSFELVA 61
Query 78 GVALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMFINQAAVSAVLV- 136
GV +GI +G + + +GSGP + +VV +A+SVAV L+ G +F QA SAVLV
Sbjct 62 GVTVGIGIGDLIISGIGSGPWQISLVVVLAMSVAV-----LLNSGPIFSMQAGNSAVLVA 116
Query 137 LVFASNGSVVFERLFDALVGG--GLAIVFSILLFPPDPVVMLCSARADVLAAVRDILAEL 194
+ GS +R+ DALVGG G+A+V + P PV AR D A++ +E+
Sbjct 117 TLIPPGGSGGPDRMIDALVGGLVGIAVVA---IIPTHPV---RRARKDA-ASILGTASEV 169
Query 195 VNTVSDPTSAPPDWPMAAADRLHQQLNGLIE-VRAN---AAMVARRAPRRWGVRSTVRDL 250
+ V+D A P+ A + + G I+ +R+N ++R +P W R + L
Sbjct 170 LQLVADGLVANDPDPIVKALQKARATQGAIDGLRSNLLGGREISRISPLYWNSRPRLERL 229
>gi|84496630|ref|ZP_00995484.1| hypothetical protein JNB_03885 [Janibacter sp. HTCC2649]
gi|84383398|gb|EAP99279.1| hypothetical protein JNB_03885 [Janibacter sp. HTCC2649]
Length=381
Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/159 (36%), Positives = 88/159 (56%), Gaps = 5/159 (3%)
Query 8 RTACGGRAVAQRLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATNVL 67
R+ R RL L I Q V A LAW+L DVF+HP FFAP++A++ + +
Sbjct 14 RSRIEARIRTDRLSGRLAFILQCGVGAALAWWLAKDVFHHPLPFFAPVTAIISLGLSYGQ 73
Query 68 RARRAQQMIVGVALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMFIN 127
R RRA +++VGVA+G+++G L GSG + + +V+ +A+++A L GL+
Sbjct 74 RVRRAVEVMVGVAIGVLIGDIFAHLFGSGVLQLLIVIMLAMTIA-----SLFGAGLLITI 128
Query 128 QAAVSAVLVLVFASNGSVVFERLFDALVGGGLAIVFSIL 166
QA V A ++ + F R DA++GG +A+ S L
Sbjct 129 QAGVQAAIITTLVAAPGQAFTRWLDAVIGGSVALAISAL 167
>gi|312141295|ref|YP_004008631.1| integral membrane protein [Rhodococcus equi 103S]
gi|311890634|emb|CBH49952.1| putative integral membrane protein [Rhodococcus equi 103S]
Length=381
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/223 (32%), Positives = 113/223 (51%), Gaps = 11/223 (4%)
Query 26 PITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATNVLRARRAQQMIVGVALGIVL 85
PI Q + AG AW+ +V H + FFAPI+AVV + + R RR+ +++ GV +GI +
Sbjct 31 PILQCGLAAGFAWWFATEVVGHTRPFFAPIAAVVSLGLSLGARMRRSVELVCGVTVGIGI 90
Query 86 GAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMFINQAAVSAVLVLVFASNGSV 145
G + +L+G+G + +VV +A+ AV L+ G +F QA SAVLV G
Sbjct 91 GDLLISLIGTGAWQITLVVTLAMGTAV-----LIGSGPIFSMQAGTSAVLVATLLPPGDA 145
Query 146 V-FERLFDALVGG--GLAIVFSILLFPPDPVVMLCSARADVLAAVRDILAELVNTVSDPT 202
FER+ DALVGG G+A+V + P PV A +LA ++L + + +
Sbjct 146 AGFERMVDALVGGLVGIAVVAVV---PTHPVRRARRDAAGILATASEVLQLVADGLIAND 202
Query 203 SAPPDWPMAAADRLHQQLNGLIEVRANAAMVARRAPRRWGVRS 245
P + + A ++ L + ++R +P WG R+
Sbjct 203 PKPIEKALRKARETQPAIDSLRSNLSGGKEISRISPLYWGSRT 245
>gi|325673871|ref|ZP_08153561.1| hypothetical protein HMPREF0724_11343 [Rhodococcus equi ATCC
33707]
gi|325555136|gb|EGD24808.1| hypothetical protein HMPREF0724_11343 [Rhodococcus equi ATCC
33707]
Length=352
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/223 (32%), Positives = 113/223 (51%), Gaps = 11/223 (4%)
Query 26 PITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATNVLRARRAQQMIVGVALGIVL 85
PI Q + AG AW+ +V H + FFAPI+AVV + + R RR+ +++ GV +GI +
Sbjct 2 PILQCGLAAGFAWWFATEVVGHTRPFFAPIAAVVSLGLSLGARMRRSVELVCGVTVGIGI 61
Query 86 GAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMFINQAAVSAVLVLVFASNGSV 145
G + +L+G+G + +VV +A+ AV L+ G +F QA SAVLV G
Sbjct 62 GDLLISLIGTGAWQITLVVTLAMGTAV-----LIGSGPIFSMQAGTSAVLVATLLPPGDA 116
Query 146 V-FERLFDALVGG--GLAIVFSILLFPPDPVVMLCSARADVLAAVRDILAELVNTVSDPT 202
FER+ DALVGG G+A+V + P PV A +LA ++L + + +
Sbjct 117 AGFERMVDALVGGLVGIAVVAVV---PTHPVRRARRDAAGILATASEVLQLVADGLIAND 173
Query 203 SAPPDWPMAAADRLHQQLNGLIEVRANAAMVARRAPRRWGVRS 245
P + + A ++ L + ++R +P WG R+
Sbjct 174 PKPIEKALREARETQPAIDSLRSNLSGGKEISRISPLYWGSRA 216
>gi|343928556|ref|ZP_08768003.1| hypothetical protein GOALK_118_00470 [Gordonia alkanivorans NBRC
16433]
gi|343761567|dbj|GAA14929.1| hypothetical protein GOALK_118_00470 [Gordonia alkanivorans NBRC
16433]
Length=373
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/167 (41%), Positives = 94/167 (57%), Gaps = 7/167 (4%)
Query 24 LWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATNVLRARRAQQMIVGVALGI 83
L PI Q ++ AGLAW++ VF+HP FFAPI+AV+ + R RR+ +++ GVA+GI
Sbjct 32 LVPIVQCALAAGLAWWIAMHVFDHPDPFFAPIAAVISLGLGLGRRWRRSVELVGGVAIGI 91
Query 84 VLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMFINQAAVSAVLVLVFASNG 143
++G +G G + VVV +A+++AV L+ G + QAA SAVLV G
Sbjct 92 LVGDLFIGAVGEGAWQIIVVVVLAMALAV-----LLDDGPLIPMQAASSAVLVATLLPPG 146
Query 144 SVV-FERLFDALVGGGLAIVFSILLFPPDPVVMLCSARADVLAAVRD 189
V F R DAL+GG + I+ LFP +P A VL VRD
Sbjct 147 GVAGFHRAIDALIGGLVGILVGA-LFPVNPAARAREDAAGVLVTVRD 192
>gi|226365023|ref|YP_002782806.1| hypothetical protein ROP_56140 [Rhodococcus opacus B4]
gi|226243513|dbj|BAH53861.1| hypothetical membrane protein [Rhodococcus opacus B4]
Length=381
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 97/327 (30%), Positives = 152/327 (47%), Gaps = 21/327 (6%)
Query 7 VRTACGGRAVAQRLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATNV 66
VR G + RLR PI Q ++ AG AW++ V H FFAPI+AVV + +
Sbjct 12 VRGRDGLKTSVHRLRVSALPILQCAIAAGAAWWVATVVIGHTTPFFAPIAAVVSLGLSLG 71
Query 67 LRARRAQQMIVGVALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMFI 126
R RR+ +++ GV +GI +G + +++GSG + +VV +A+S AV L+ G +F
Sbjct 72 ARLRRSVELVAGVTIGIGVGDLIVSVIGSGTWQITLVVMLAMSAAV-----LLNSGPIFS 126
Query 127 NQAAVSAVLV-LVFASNGSVVFERLFDALVGG--GLAIVFSILLFPPDPVVMLCSARADV 183
QA SAVLV + G+ R+ DAL GG G+A+V L P PV A+V
Sbjct 127 MQAGNSAVLVATLLPPGGAAGINRMVDALTGGLVGIAVVA---LIPTHPVGRARKYAANV 183
Query 184 LAAVRDILAELVNTVSDPTSAPPDWPMAAADRLHQQLNGLIEVRANAAMVARRAPRRWGV 243
L +++ + + + P + + A ++ L A ++R +P W
Sbjct 184 LGTASEVMQLVADGLVANDDKPIEEALQKARATQASIDTLRTHLAGGREISRISPLYWNT 243
Query 244 RSTVRDLDQQAVYLALLVSSVLHLA-RTIAGPGGDKLPTP-----VHAVLTDLAAGTGLA 297
R + L A L + ++ LA R++ D++ P V + L +A
Sbjct 244 RGRLERLTAAADPLDNALRNIRVLARRSLTLVRDDEILNPRLVDQVEKLAHALETLRQMA 303
Query 298 DADPTAANEHAAAARATASTLQSAACG 324
ADP + A AAR L+S A G
Sbjct 304 LADPGQQPDQAEAAR----VLRSVASG 326
>gi|336321921|ref|YP_004601889.1| membrane protein-like protein [Cellvibrio gilvus ATCC 13127]
gi|336105502|gb|AEI13321.1| membrane protein-like protein [Cellvibrio gilvus ATCC 13127]
Length=376
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/156 (40%), Positives = 90/156 (58%), Gaps = 8/156 (5%)
Query 19 RLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATNVLRARRAQQMIVG 78
R+R +PI Q SV AG+A+ + H V HP FFAP+SA + + + ARR ++ VG
Sbjct 31 RVRAAWFPILQASVAAGIAFGIAHYVLGHPYPFFAPVSAWIALGFSTDRSARRVAELAVG 90
Query 79 VALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMFINQAAVSAVLV-- 136
VA+G+ LG V ++G+G + +V+F+A +V+ L R G M QA V A+++
Sbjct 91 VAIGVGLGDAVVHVIGTGLWQVALVLFVAATVSRLLDR-----GAMLTTQAGVQAIVIVG 145
Query 137 LVFASNGSVVFERLFDALVGGGLAIVFSILLFPPDP 172
L A+ F R DALVGG +A+ + LL P DP
Sbjct 146 LPAAAATGGPFGRWTDALVGGAVALAVA-LLTPSDP 180
>gi|317509471|ref|ZP_07967087.1| pyridoxamine 5'-phosphate oxidase [Segniliparus rugosus ATCC
BAA-974]
gi|316252223|gb|EFV11677.1| pyridoxamine 5'-phosphate oxidase [Segniliparus rugosus ATCC
BAA-974]
Length=560
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 82/256 (33%), Positives = 133/256 (52%), Gaps = 12/256 (4%)
Query 19 RLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATNVLRARRAQQMIVG 78
RL++ PI Q S+ AGLAW++ ++ H FFAPI+AV+ + + R RRA +++ G
Sbjct 210 RLKSTALPILQCSIGAGLAWFVAKNLVGHLSPFFAPIAAVISLGVSLGSRWRRAVELVCG 269
Query 79 VALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMFINQAAVSAVLVLV 138
V LGI +G + +++G G + V +A+ A + +GL+F QAA S++LV++
Sbjct 270 VMLGIAIGDVLVSVIGHGWWQISFFVAVAMVAAT-----FIDKGLIFPMQAASSSLLVVL 324
Query 139 F----ASNGSVVFERLFDALVGGGLAIVFSILLFPPDPVVMLCSARADVLAAVRDILAEL 194
F A RL DAL+GG + I+ S LL P P + A A LA +L +
Sbjct 325 FPPTVAGTNIAGPSRLVDALIGGVIGIMISALL-PAHPFLRAHQAAAAALATCETVLRGV 383
Query 195 VNTVSDPTSAPPDWPMAAADRLHQQLNGL-IEVRANAAMVARRAPRRWGVRSTVRDLDQQ 253
+ +A + +AAA Q++ L VRA +V R +P W R+ V ++
Sbjct 384 AEGLQARDAARLEEVLAAARASQPQIDALQTYVRAGDEIV-RISPLFWTRRAEVHEVSVS 442
Query 254 AVYLALLVSSVLHLAR 269
A ++ ++ + LAR
Sbjct 443 ADHIDRIIRDLRVLAR 458
>gi|239985697|ref|ZP_04706361.1| hypothetical protein SrosN1_00170 [Streptomyces roseosporus NRRL
11379]
gi|239992694|ref|ZP_04713358.1| hypothetical protein SrosN1_35700 [Streptomyces roseosporus NRRL
11379]
gi|291449676|ref|ZP_06589066.1| predicted protein [Streptomyces roseosporus NRRL 15998]
gi|291352623|gb|EFE79527.1| predicted protein [Streptomyces roseosporus NRRL 15998]
Length=371
Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 88/254 (35%), Positives = 128/254 (51%), Gaps = 13/254 (5%)
Query 19 RLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATNVLRARRAQQMIVG 78
R+R LWP+ Q SV A L+W++ +VF+H FAPI+ +V ++ R A ++I G
Sbjct 7 RVRDNLWPVLQQSVAAALSWWIAGNVFDHHVPLFAPIATLVALNTPVGGRGTNAVRVISG 66
Query 79 VALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMFINQAAVSAVLVLV 138
V G+V+G LG G A+G V AL VA+L + + QAAV AV+ +
Sbjct 67 VVAGVVVGQLAFHFLGQGDAAVGAAVLCALLVALLLDGQRIT-----MAQAAVGAVISVA 121
Query 139 FASNGSVVFERLFDALVGGGLAIVFSILLFPPDPVVMLCSARADVLAAVRDILAELVNTV 198
+ + +R+ DAL+G G+A+VFS LLFPP P+ +L A L + L +
Sbjct 122 AGAQAGI--DRVQDALLGAGVALVFSQLLFPPHPLALLRRAETATLKGLGRALELTARAL 179
Query 199 SDPTSAPPDWPMAAADRLHQQLNGLIEVRANAAMVARRAPRRWGVRSTVRDLDQQ---AV 255
+ P + +H LN L R++A VARR P W RS + Q+
Sbjct 180 EESAEEREAQPWEESRPVHTLLNDLGGTRSDAIAVARRTP-HW--RSRQEPVHQEIAATR 236
Query 256 YLALLVSSVLHLAR 269
YL LL +S L L R
Sbjct 237 YLDLLGNSCLTLIR 250
>gi|108805952|ref|YP_645889.1| hypothetical protein Rxyl_3171 [Rubrobacter xylanophilus DSM
9941]
gi|108767195|gb|ABG06077.1| conserved hypothetical protein [Rubrobacter xylanophilus DSM
9941]
Length=378
Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/156 (38%), Positives = 90/156 (58%), Gaps = 7/156 (4%)
Query 18 QRLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATNVLRARRAQQMIV 77
+RLR WP+ Q++V A LAWYL + H + F A I+AV+ + A RRA + I
Sbjct 24 ERLRYGGWPVVQSAVAASLAWYLAEALLGHQRPFVAAIAAVISVGAVAGQTLRRAAEWIF 83
Query 78 GVALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMFINQAAVSAVLVL 137
GVALG+ + + +G+G + G +V +A++VA++ RG G+M + +A +SA+LV
Sbjct 84 GVALGLAVADLIVLAIGTGVLQTGFIVGLAMTVALMV-RG----GVMLVTEAGISALLVA 138
Query 138 VFASNG-SVVFERLFDALVGGGLAIVFSILLFPPDP 172
V +R +ALVGGG A+ S +FP DP
Sbjct 139 NLDPTAYGVSPDRFVEALVGGGTALAVSA-VFPSDP 173
>gi|238061341|ref|ZP_04606050.1| membrane protein [Micromonospora sp. ATCC 39149]
gi|237883152|gb|EEP71980.1| membrane protein [Micromonospora sp. ATCC 39149]
Length=411
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 69/215 (33%), Positives = 113/215 (53%), Gaps = 14/215 (6%)
Query 38 WYLTHDVFNHPQAFFAPISAVVCMSATNVLRARRAQQMIVGVALGIVLGAGVHALLGSGP 97
W ++H++ ++PQ FAPISAV ++A+ R RR ++IVGVA+G+ LG + LG+G
Sbjct 59 WIVSHELMHNPQPVFAPISAVGTLAASVGQRLRRTVELIVGVAVGVFLGDVLIYFLGTGG 118
Query 98 IAMGVVVFIALSVAVLCARGLVAQGLMFINQAAVSAVLVLVFA-SNGSVVFERLFDALVG 156
+G+VV A+ + + + + QAA +AVL++ + S + R DA VG
Sbjct 119 WQLGLVVTAAILLTI-----FFGASVAIVIQAAATAVLIVTLSPSTQDLEIPRFVDAFVG 173
Query 157 GGLAIVFSILLFPPDPVVMLCSARADVLAAVRDILAELVNTVSDP-TSAPPDWPMAAADR 215
GG+A+V + LL P +P+ ++ A L D+LAE ++ + D AA +R
Sbjct 174 GGIALVVTALLLPLNPLQVINRAARPAL----DLLAEQLDVAAGALRDRDRDSAQAALER 229
Query 216 LHQ---QLNGLIEVRANAAMVARRAPRRWGVRSTV 247
L + +L E A + +P RW RS +
Sbjct 230 LRENKAELATFTEAIEGAKETSTLSPARWHRRSEL 264
>gi|326333162|ref|ZP_08199410.1| putative membrane protein [Nocardioidaceae bacterium Broad-1]
gi|325949053|gb|EGD41145.1| putative membrane protein [Nocardioidaceae bacterium Broad-1]
Length=371
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/144 (37%), Positives = 83/144 (58%), Gaps = 5/144 (3%)
Query 19 RLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATNVLRARRAQQMIVG 78
RL++ W + Q + AG+AW++ + H Q FAPI+AVV + + R RR ++ +G
Sbjct 23 RLKSKRWHVFQAAGAAGVAWFIAAGLLGHAQPVFAPIAAVVSLGTSYGQRLRRVTEVTIG 82
Query 79 VALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMFINQAAVSAVLVLV 138
VALG+ LG V ++G G M +VV +A++V + ++ G +F NQAAV ++ V+
Sbjct 83 VALGVFLGDVVVQVIGEGAWQMTLVVGMAMAVGI-----FISSGQVFRNQAAVQSIFVMG 137
Query 139 FASNGSVVFERLFDALVGGGLAIV 162
F R DAL+GG +A+V
Sbjct 138 LLPTPGAAFTRWTDALIGGAVALV 161
>gi|326384113|ref|ZP_08205796.1| hypothetical protein SCNU_14319 [Gordonia neofelifaecis NRRL
B-59395]
gi|326197273|gb|EGD54464.1| hypothetical protein SCNU_14319 [Gordonia neofelifaecis NRRL
B-59395]
Length=357
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 90/315 (29%), Positives = 145/315 (47%), Gaps = 13/315 (4%)
Query 14 RAVAQRLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATNVLRARRAQ 73
R +RL L PI Q ++ AGLAW++ DV +H + FFAP++AV + + R RR+
Sbjct 3 RVRVRRLWLSLVPIAQCAIAAGLAWFVAFDVLHHSRPFFAPVAAVASLGLSLARRWRRSV 62
Query 74 QMIVGVALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMFINQAAVSA 133
++IVGV++GI++G V +GSG + + A + V G M QAA SA
Sbjct 63 ELIVGVSIGILVGDLVITQIGSGAWQI-----TVVVAAAMAVAVFVDGGPMLPTQAASSA 117
Query 134 VLVLVFASNGSVV-FERLFDALVGGGLAIVFSILLFPPDPVVMLCSARADVLAAVRDILA 192
VLV G V +ER DAL+GG + ++ L+ P +P A +L RD+
Sbjct 118 VLVATLLPPGDVAGYERAVDALIGGLIGLLVGALV-PVNPARRARRDAAGILDTFRDLSH 176
Query 193 ELVNTVSDPTSAPPDWPMAAADRLHQQLNGLIEVRANAAMVARRAPRRWGVRSTVRDLDQ 252
+L ++ + +A A ++GL V +P W R +R +
Sbjct 177 QLAESLRERDEEAVYRVLAEARGTQSAIDGLRSDVLAGREVGTLSPMYWASRERLRRIAA 236
Query 253 QAVYLALLVSSVLHLARTIAG--PGGDKLPTPVHAVLTDLA----AGTGLADADPTAANE 306
A + V + + R G G + P+ A++ D+ + A+P + +
Sbjct 237 TADPIDNAVRNFRIVTRRALGLTQRGVAVEDPMIAIIDDIGDLFETLRQMMLAEPGESPD 296
Query 307 HAAAARATASTLQSA 321
A AARA S ++ A
Sbjct 297 QADAARAVRSVVRRA 311
>gi|227547854|ref|ZP_03977903.1| membrane protein family protein [Corynebacterium lipophiloflavum
DSM 44291]
gi|227080039|gb|EEI18002.1| membrane protein family protein [Corynebacterium lipophiloflavum
DSM 44291]
Length=388
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/239 (30%), Positives = 122/239 (52%), Gaps = 16/239 (6%)
Query 19 RLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATNVLRARRAQQMIVG 78
R+R L PI QT++ AG+A+++ +VF H Q FFAPIS ++ + T R +A + +G
Sbjct 25 RVRKRLLPIMQTAIAAGVAFWIASEVFGHTQPFFAPISVIIIVGMTGGERISKALDISLG 84
Query 79 VALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMFINQAAVSAVLVLV 138
+G+ +G LGSG + V+V AL +A +R + NQ A+ +VL+
Sbjct 85 CVIGVAVGDLFFYRLGSGGWQIAVIVACALLIASFFSRSQLVN-----NQVAIGSVLIAT 139
Query 139 FASNGSVV--FERLFDALVGGGLAIVFSILLFPPDPVVMLCSARADVLAAVRDILAELVN 196
G+ V +R DA VG +A+V ++ L P PV AR ++ + V ++++ +++
Sbjct 140 IMPPGAEVTGIDRTIDAFVGAAVALV-TLALIPQGPV---GKARQEI-SKVMELMSSVLD 194
Query 197 TVSDPTSAPPDWPMAAADRL----HQQLNGLIEVRANAAMVARRAPRRWGVRSTVRDLD 251
V+D + + + A L ++ + A+ A AR +P WG R V L+
Sbjct 195 DVADGLRSGNEEVIEEALDLIRGSQTDIDAMSSAVASGAESARISPFLWGSRRYVHSLE 253
>gi|111020302|ref|YP_703274.1| hypothetical protein RHA1_ro03313 [Rhodococcus jostii RHA1]
gi|110819832|gb|ABG95116.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=395
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/160 (37%), Positives = 96/160 (60%), Gaps = 5/160 (3%)
Query 14 RAVAQRLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATNVLRARRAQ 73
RA R L PI QT+V AG AW+++ +V H Q AP++AVVC+S R+RRA
Sbjct 37 RAALLRFAGYLVPIAQTAVTAGAAWWVSVEVAGHEQPLLAPLAAVVCLSVARGARSRRAG 96
Query 74 QMIVGVALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMFINQAAVSA 133
++I GV +G ++ V +G+GP + +VV +A+S AVL G V + + + +A
Sbjct 97 ELIAGVTIGTIVSDVVVRYIGNGPWQICLVVAVAMSFAVLLDGGSV----IVLQAGSSAA 152
Query 134 VLVLVFASNGSVVFERLFDALVGGGLAIVFSILLFPPDPV 173
++ + ++ + F+R+ DAL+GG L++V ++ + P DPV
Sbjct 153 LVAAMASATSAHPFDRVVDALIGGALSLV-ALSVLPTDPV 191
>gi|271969899|ref|YP_003344095.1| membrane protein [Streptosporangium roseum DSM 43021]
gi|270513074|gb|ACZ91352.1| membrane protein-like protein [Streptosporangium roseum DSM 43021]
Length=365
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/257 (28%), Positives = 120/257 (47%), Gaps = 7/257 (2%)
Query 27 ITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATNVLRARRAQQMIVGVALGIVLG 86
I Q +V A LAW + + H FAPIS ++C+ R RR +++VGV+LG+ +G
Sbjct 23 IVQCAVGAALAWIVAVHLLGHVHPLFAPISVMICVGVGLGRRLRRVAELVVGVSLGVGIG 82
Query 87 AGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMFINQAAVSAVLVLVFASNGSV- 145
+ + +GSGP M +V+ +A+++A GL+ G +F++Q SAVLV + V
Sbjct 83 DLLVSWIGSGPWQMALVIALAMTIA-----GLLNSGELFVSQVGSSAVLVAMLVPGEDVG 137
Query 146 VFERLFDALVGGGLAIVFSILLFPPDPVVMLCSARADVLAAVRDILAELVNTVSDPTSAP 205
+R+ DAL GG + I ++ L P P+ + + VL A+ +L + +
Sbjct 138 GLDRMADALTGGVIGIA-AVALLPASPLTIAGKHLSGVLDALSTVLEQAAEAIEKCDMDL 196
Query 206 PDWPMAAADRLHQQLNGLIEVRANAAMVARRAPRRWGVRSTVRDLDQQAVYLALLVSSVL 265
+ R + N+ + +P RW R+ + + AV + L + +
Sbjct 197 AAEALEGGRRTQTAVEEFEAALENSKEIIMISPLRWHHRARLTRYETAAVPVDLALRNAR 256
Query 266 HLARTIAGPGGDKLPTP 282
L R G+ P P
Sbjct 257 VLVRRTLAALGEASPPP 273
>gi|229821892|ref|YP_002883418.1| hypothetical protein Bcav_3414 [Beutenbergia cavernae DSM 12333]
gi|229567805|gb|ACQ81656.1| conserved hypothetical protein [Beutenbergia cavernae DSM 12333]
Length=379
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/182 (37%), Positives = 101/182 (56%), Gaps = 12/182 (6%)
Query 19 RLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATNVLRARRAQQMIVG 78
R+RT P+ S+ AG+A + + H FFA I+A VC+ + ++ RR ++ +G
Sbjct 22 RVRTAFVPVLWASLAAGVAVAIAYVGLGHTYPFFAAIAAWVCLGFSPDVQPRRVGELALG 81
Query 79 VALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMFINQAAVSAVLVL- 137
V+LG+ LG L G+GP+ + VV+F+ A L AR L A G MF Q+ V A++V+
Sbjct 82 VSLGVGLGELFAHLFGTGPVQIAVVLFL----AALVARFLDA-GQMFTTQSGVQAIVVVG 136
Query 138 ---VFASNGSVVFERLFDALVGGGLAIVFSILLFPPDPVVMLCSARADVLAAVRDILAEL 194
+ S+G V R DAL+GGG+A++FS L P DP + +VL + D+L L
Sbjct 137 LPAIAVSSGPV--GRWTDALIGGGVALLFSAFL-PGDPRTRPRALGREVLLELADVLGAL 193
Query 195 VN 196
Sbjct 194 TE 195
>gi|296392549|ref|YP_003657433.1| hypothetical protein Srot_0111 [Segniliparus rotundus DSM 44985]
gi|296179696|gb|ADG96602.1| conserved hypothetical protein [Segniliparus rotundus DSM 44985]
Length=362
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 78/256 (31%), Positives = 128/256 (50%), Gaps = 10/256 (3%)
Query 18 QRLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATNVLRARRAQQMIV 77
+RL+ PI Q SV AGLAW++ ++ H FFAP++AV+ + + R RRA +++
Sbjct 11 ERLKLTALPIVQCSVGAGLAWFVAKNIVGHASPFFAPVAAVISLGVSLGSRWRRAVELVC 70
Query 78 GVALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMFINQAAVSAVLVL 137
GV LGIV+G + + G G + V A+ +A + +GL+F QAA SA+LV+
Sbjct 71 GVMLGIVIGDLLVRVTGHGWWQISFFVAAAMVLAT-----FIDKGLIFPMQAASSALLVV 125
Query 138 VF--ASNGSVVF--ERLFDALVGGGLAIVFSILLFPPDPVVMLCSARADVLAAVRDILAE 193
+F G+ + RL DA VGG + I+ S LL P P + A A VLA +L
Sbjct 126 LFPPTVGGASIAGPGRLVDAFVGGVIGILISALL-PAHPFLRAHQAAAAVLATGESVLRG 184
Query 194 LVNTVSDPTSAPPDWPMAAADRLHQQLNGLIEVRANAAMVARRAPRRWGVRSTVRDLDQQ 253
+ ++ + + ++ A Q++ L + R +P W R V ++
Sbjct 185 VAEGLAARDADRIEEVLSLARSSQPQIDTLQNYLRAGDEIVRISPLFWAYRDRVHEVSAS 244
Query 254 AVYLALLVSSVLHLAR 269
A ++ ++ + LAR
Sbjct 245 ADHIDRIIRDLRVLAR 260
>gi|213965157|ref|ZP_03393355.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
gi|213952271|gb|EEB63655.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
Length=467
Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/237 (28%), Positives = 121/237 (52%), Gaps = 8/237 (3%)
Query 18 QRLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSA-TNVLRARRAQQMI 76
R+R+ I Q ++ AGLA++ +V HP FFAP++A + ++ T R + + +++
Sbjct 79 DRVRSRWMLIVQATLAAGLAYWFALEVLGHPNPFFAPMAAFISLNVMTAGPRLKHSVELV 138
Query 77 VGVALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMFINQAAVSAVLV 136
+G +LG+ +G + ++LGSG + V VF+A+ + V R G + +NQAA SAVL+
Sbjct 139 LGASLGVGIGDVIISILGSGIWQLTVGVFVAMVIGVFVGR-----GPLVVNQAASSAVLI 193
Query 137 LVFASNGSV-VFERLFDALVGGGLAIVFSILLFPPDPVVMLCSARADVLAAVRDILAELV 195
G+ + R+ DALVGG + I+ +++ P P+ A VL D+L ++
Sbjct 194 ATIIPPGTAGSYYRMIDALVGGVVGIIV-LMILPRSPLAGARRKVAKVLDMGADVLYDIG 252
Query 196 NTVSDPTSAPPDWPMAAADRLHQQLNGLIEVRANAAMVARRAPRRWGVRSTVRDLDQ 252
+ + + ++ + Q++ + A+A R +P W R + L +
Sbjct 253 IGMKEGDTDRIRTALSVVRSMQAQVSLMDRTVADAGEQVRISPLLWRSRDRIHSLSR 309
>gi|337291693|ref|YP_004630714.1| hypothetical protein CULC22_02090 [Corynebacterium ulcerans BR-AD22]
gi|334699999|gb|AEG84795.1| putative membrane protein [Corynebacterium ulcerans BR-AD22]
Length=384
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/167 (39%), Positives = 99/167 (60%), Gaps = 12/167 (7%)
Query 19 RLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATNVLRARRAQQMIVG 78
RLR+ + Q + AGL++++ +F H Q FFAP+S V+ +S T R RR+ ++++G
Sbjct 20 RLRSNWIYVIQAGLAAGLSYWVGLHLFGHEQPFFAPMSTVIVLSTTGGERFRRSFELVLG 79
Query 79 VALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVA-QGLMFINQAAVSAVLVL 137
V++G+ LG + AL+GSG + VVV ALS+ + G VA +G++ NQA+ +AVL+
Sbjct 80 VSIGVGLGDVLIALVGSGVWQISVVV--ALSIVL----GTVADKGVLVANQASFAAVLIA 133
Query 138 VFASNG-SVVFERLFDALVGGGLAIVFSILLFPPDPVVMLCSARADV 183
G S +R+ DALVGG + I I L P P L S R ++
Sbjct 134 TILPPGTSGGTDRMLDALVGGLVGIAV-IALIPDSP---LRSGRREI 176
>gi|334697664|gb|AEG82461.1| putative membrane protein [Corynebacterium ulcerans 809]
Length=384
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/167 (39%), Positives = 99/167 (60%), Gaps = 12/167 (7%)
Query 19 RLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATNVLRARRAQQMIVG 78
RLR+ + Q + AGL++++ +F H Q FFAP+S V+ +S T R RR+ ++++G
Sbjct 20 RLRSNWIYVIQAGLAAGLSYWVGLHLFGHEQPFFAPMSTVIVLSTTGGERFRRSFELVLG 79
Query 79 VALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVA-QGLMFINQAAVSAVLVL 137
V++G+ LG + AL+GSG + VVV ALS+ + G VA +G++ NQA+ +AVL+
Sbjct 80 VSIGVGLGDVLIALVGSGVWQISVVV--ALSIVL----GTVADKGVLVANQASFAAVLIA 133
Query 138 VFASNG-SVVFERLFDALVGGGLAIVFSILLFPPDPVVMLCSARADV 183
G S +R+ DALVGG + I I L P P L S R ++
Sbjct 134 TILPPGTSGGTDRMLDALVGGLVGIAV-IALIPDSP---LRSGRREI 176
>gi|300780372|ref|ZP_07090228.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
33030]
gi|300534482|gb|EFK55541.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
33030]
Length=445
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/256 (30%), Positives = 126/256 (50%), Gaps = 26/256 (10%)
Query 7 VRTACGGRAVAQRLRTVLWPITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATNV 66
V + G R +R+R L Q + AGLA+++ H+ HPQ FFAPIS V+ + +
Sbjct 13 VENSIGARF--RRVRQRLLAAIQVGIAAGLAYFIAHEWVGHPQPFFAPISVVIIVGISGG 70
Query 67 LRARRAQQMIVGVALGIVLGAGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMFI 126
R RA M +G LG+++G + A LG+G G + +A+ V++L A G ++ ++
Sbjct 71 ERINRAFDMALGCILGVLVGDFLFAPLGTG----GWQIALAVGVSLLFA-GFFSKSVLVA 125
Query 127 NQAAVSAVLV-LVFASNGSVV-FERLFDALVGG--GLAIVFSILLFPPDPVVMLCSARAD 182
NQ A+ ++L+ + + V +R DA +G GLA+ I L P P L +AR +
Sbjct 126 NQVAIGSILIATIMPPDADVTGIDRTIDAFIGSAVGLAV---IALLPSAP---LATARHE 179
Query 183 VLAAVRDILAELVNTVS------DPTSAPPDWPMAAADRLHQQLNGLIEVRANAAMVARR 236
+ +R +L+ ++N VS DPT ++A + + + AR
Sbjct 180 ISNVLR-VLSSVLNDVSHALLTQDPTQVAE--ALSAIRGTQNDIEAITAATKSGRESARL 236
Query 237 APRRWGVRSTVRDLDQ 252
+P W R V L++
Sbjct 237 SPFLWRSRRYVDALEK 252
>gi|19553961|ref|NP_601963.1| hypothetical protein NCgl2672 [Corynebacterium glutamicum ATCC
13032]
gi|62391604|ref|YP_227006.1| hypothetical protein cg3067 [Corynebacterium glutamicum ATCC
13032]
gi|145296762|ref|YP_001139583.1| hypothetical protein cgR_2666 [Corynebacterium glutamicum R]
gi|22002081|sp|Q99340.2|Y2769_CORGL RecName: Full=Uncharacterized protein Cgl2769/cg3067
gi|21325541|dbj|BAC00163.1| Hypothetical membrane protein [Corynebacterium glutamicum ATCC
13032]
gi|41326946|emb|CAF20790.1| putative membrane protein [Corynebacterium glutamicum ATCC 13032]
gi|140846682|dbj|BAF55681.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344046172|gb|EGV41838.1| hypothetical protein CgS9114_00435 [Corynebacterium glutamicum
S9114]
Length=389
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/225 (29%), Positives = 113/225 (51%), Gaps = 7/225 (3%)
Query 27 ITQTSVVAGLAWYLTHDVFNHPQAFFAPISAVVCMSATNVLRARRAQQMIVGVALGIVLG 86
I +++ AG+A+++ +V H Q FFAP+SAV+ + + R +RA ++ +G ALG+ LG
Sbjct 33 IVHSAIGAGVAYWIAVEVIKHGQPFFAPMSAVIILGLSGGDRIKRATELTLGCALGVGLG 92
Query 87 AGVHALLGSGPIAMGVVVFIALSVAVLCARGLVAQGLMFINQAAVSAVLV-LVFASNGSV 145
+ +G+G + VVV +AL VA V+ + NQ A+ +L+ +F
Sbjct 93 DLLIMQIGTGYWQIFVVVGLALLVA-----SFVSPAPLVSNQMAIGGILIATMFPPGDGG 147
Query 146 VFERLFDALVGGGLAIVFSILLFPPDPVVMLCSARADVLAAVRDILAELVNTVSDPTSAP 205
+R+ DA +GGG+ I+ I L P P+ A+VL +L ++ ++ +A
Sbjct 148 SIDRMIDAFIGGGVGILV-IALLPSSPLDAGRHQVANVLGIAASVLEDVAASLKAKDAAK 206
Query 206 PDWPMAAADRLHQQLNGLIEVRANAAMVARRAPRRWGVRSTVRDL 250
+ + A R +N L ++ +P WG R+ VR L
Sbjct 207 LNNALEALRRSQASVNKLETAASSGKEATTVSPFLWGDRARVRSL 251
Lambda K H
0.324 0.134 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 663860846620
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40