BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2578c Length=340 Score E Sequences producing significant alignments: (Bits) Value gi|15609715|ref|NP_217094.1| hypothetical protein Rv2578c [Mycob... 690 0.0 gi|254366779|ref|ZP_04982822.1| conserved hypothetical protein [... 689 0.0 gi|308378406|ref|ZP_07482486.2| hypothetical protein TMIG_03319 ... 666 0.0 gi|306972966|ref|ZP_07485627.1| hypothetical protein TMJG_01558 ... 643 0.0 gi|308369758|ref|ZP_07418953.2| hypothetical protein TMBG_01118 ... 598 4e-169 gi|254823300|ref|ZP_05228301.1| hypothetical protein MintA_25454... 589 3e-166 gi|41407152|ref|NP_959988.1| hypothetical protein MAP1054 [Mycob... 588 3e-166 gi|118466152|ref|YP_882638.1| radical SAM domain-containing prot... 584 7e-165 gi|254775899|ref|ZP_05217415.1| radical SAM domain-containing pr... 577 8e-163 gi|342858600|ref|ZP_08715255.1| hypothetical protein MCOL_06981 ... 574 8e-162 gi|296170810|ref|ZP_06852381.1| radical SAM domain protein [Myco... 566 1e-159 gi|240171987|ref|ZP_04750646.1| hypothetical protein MkanA1_2191... 566 2e-159 gi|183982161|ref|YP_001850452.1| hypothetical protein MMAR_2148 ... 561 6e-158 gi|118617357|ref|YP_905689.1| hypothetical protein MUL_1734 [Myc... 557 1e-156 gi|118468989|ref|YP_887308.1| Fe-S protein, radical SAM family p... 523 2e-146 gi|126434921|ref|YP_001070612.1| radical SAM domain-containing p... 518 5e-145 gi|108799263|ref|YP_639460.1| radical SAM family protein [Mycoba... 518 5e-145 gi|120403584|ref|YP_953413.1| radical SAM domain-containing prot... 514 1e-143 gi|289762749|ref|ZP_06522127.1| DNA repair photolyase [Mycobacte... 491 7e-137 gi|169629952|ref|YP_001703601.1| hypothetical protein MAB_2868c ... 490 1e-136 gi|145224377|ref|YP_001135055.1| radical SAM domain-containing p... 479 2e-133 gi|111024073|ref|YP_707045.1| DNA repair photolyase [Rhodococcus... 461 1e-127 gi|226366313|ref|YP_002784096.1| hypothetical protein ROP_69040 ... 458 4e-127 gi|325672584|ref|ZP_08152280.1| radical SAM family Fe-S protein ... 455 5e-126 gi|312139532|ref|YP_004006868.1| sam dependent methyltrasnferase... 455 6e-126 gi|226306447|ref|YP_002766407.1| hypothetical protein RER_29600 ... 447 1e-123 gi|229493506|ref|ZP_04387291.1| radical SAM domain protein [Rhod... 446 2e-123 gi|333919496|ref|YP_004493077.1| hypothetical protein AS9A_1828 ... 431 6e-119 gi|343928291|ref|ZP_08767744.1| hypothetical protein GOALK_112_0... 422 3e-116 gi|262201690|ref|YP_003272898.1| radical SAM protein [Gordonia b... 417 1e-114 gi|54025629|ref|YP_119871.1| hypothetical protein nfa36590 [Noca... 411 1e-112 gi|317508692|ref|ZP_07966347.1| radical SAM superfamily protein ... 404 8e-111 gi|296393872|ref|YP_003658756.1| radical SAM domain-containing p... 403 2e-110 gi|284033872|ref|YP_003383803.1| Radical SAM domain-containing p... 402 6e-110 gi|332670528|ref|YP_004453536.1| Radical SAM domain-containing p... 399 4e-109 gi|336320705|ref|YP_004600673.1| Radical SAM domain-containing p... 391 7e-107 gi|148272084|ref|YP_001221645.1| hypothetical protein CMM_0905 [... 379 5e-103 gi|258653505|ref|YP_003202661.1| radical SAM domain-containing p... 376 2e-102 gi|119962544|ref|YP_947385.1| radical SAM domain-containing prot... 374 1e-101 gi|296139660|ref|YP_003646903.1| radical SAM protein [Tsukamurel... 372 5e-101 gi|325962870|ref|YP_004240776.1| DNA repair photolyase [Arthroba... 371 1e-100 gi|296129654|ref|YP_003636904.1| Radical SAM domain protein [Cel... 367 1e-99 gi|88855555|ref|ZP_01130219.1| hypothetical protein A20C1_01991 ... 365 6e-99 gi|220912256|ref|YP_002487565.1| radical SAM protein [Arthrobact... 362 6e-98 gi|260905232|ref|ZP_05913554.1| DNA repair photolyase [Brevibact... 355 5e-96 gi|229820495|ref|YP_002882021.1| Radical SAM domain-containing p... 355 8e-96 gi|239917943|ref|YP_002957501.1| DNA repair photolyase [Micrococ... 347 1e-93 gi|50954181|ref|YP_061469.1| hypothetical protein Lxx03480 [Leif... 345 4e-93 gi|289704516|ref|ZP_06500951.1| radical SAM domain protein [Micr... 345 5e-93 gi|257069986|ref|YP_003156241.1| DNA repair photolyase [Brachyba... 344 1e-92 >gi|15609715|ref|NP_217094.1| hypothetical protein Rv2578c [Mycobacterium tuberculosis H37Rv] gi|15842117|ref|NP_337154.1| hypothetical protein MT2655 [Mycobacterium tuberculosis CDC1551] gi|31793762|ref|NP_856255.1| hypothetical protein Mb2609c [Mycobacterium bovis AF2122/97] 62 more sequence titles Length=340 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/340 (100%), Positives = 340/340 (100%), Gaps = 0/340 (0%) Query 1 MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL 60 MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL Sbjct 1 MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL 60 Query 61 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR 120 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR Sbjct 61 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR 120 Query 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV 180 RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV Sbjct 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV 180 Query 181 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH 240 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH Sbjct 181 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH 240 Query 241 LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSY 300 LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSY Sbjct 241 LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSY 300 Query 301 REMLRERVAPLIAKYRLAGDHRPAPPETEAALVPVQATLF 340 REMLRERVAPLIAKYRLAGDHRPAPPETEAALVPVQATLF Sbjct 301 REMLRERVAPLIAKYRLAGDHRPAPPETEAALVPVQATLF 340 >gi|254366779|ref|ZP_04982822.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|134152290|gb|EBA44335.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] Length=340 Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/340 (99%), Positives = 339/340 (99%), Gaps = 0/340 (0%) Query 1 MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL 60 MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL Sbjct 1 MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL 60 Query 61 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR 120 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR Sbjct 61 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR 120 Query 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV 180 RETVALG NTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV Sbjct 121 RETVALGANTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV 180 Query 181 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH 240 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH Sbjct 181 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH 240 Query 241 LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSY 300 LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSY Sbjct 241 LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSY 300 Query 301 REMLRERVAPLIAKYRLAGDHRPAPPETEAALVPVQATLF 340 REMLRERVAPLIAKYRLAGDHRPAPPETEAALVPVQATLF Sbjct 301 REMLRERVAPLIAKYRLAGDHRPAPPETEAALVPVQATLF 340 >gi|308378406|ref|ZP_07482486.2| hypothetical protein TMIG_03319 [Mycobacterium tuberculosis SUMu009] gi|308352634|gb|EFP41485.1| hypothetical protein TMIG_03319 [Mycobacterium tuberculosis SUMu009] Length=328 Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/328 (100%), Positives = 328/328 (100%), Gaps = 0/328 (0%) Query 13 MPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAALPFRYTVNGYRGC 72 MPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAALPFRYTVNGYRGC Sbjct 1 MPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAALPFRYTVNGYRGC 60 Query 73 SHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWRRETVALGTNTDP 132 SHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWRRETVALGTNTDP Sbjct 61 SHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWRRETVALGTNTDP 120 Query 133 YQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQVPVSVAVSLAVGD 192 YQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQVPVSVAVSLAVGD Sbjct 121 YQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQVPVSVAVSLAVGD 180 Query 193 PELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEHLDQLLGQIAAAG 252 PELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEHLDQLLGQIAAAG Sbjct 181 PELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEHLDQLLGQIAAAG 240 Query 253 ATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSYREMLRERVAPLI 312 ATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSYREMLRERVAPLI Sbjct 241 ATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSYREMLRERVAPLI 300 Query 313 AKYRLAGDHRPAPPETEAALVPVQATLF 340 AKYRLAGDHRPAPPETEAALVPVQATLF Sbjct 301 AKYRLAGDHRPAPPETEAALVPVQATLF 328 >gi|306972966|ref|ZP_07485627.1| hypothetical protein TMJG_01558 [Mycobacterium tuberculosis SUMu010] gi|308357657|gb|EFP46508.1| hypothetical protein TMJG_01558 [Mycobacterium tuberculosis SUMu010] Length=319 Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust. Identities = 316/319 (99%), Positives = 317/319 (99%), Gaps = 0/319 (0%) Query 1 MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL 60 MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL Sbjct 1 MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL 60 Query 61 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR 120 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR Sbjct 61 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR 120 Query 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV 180 RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV Sbjct 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV 180 Query 181 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH 240 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH Sbjct 181 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH 240 Query 241 LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSY 300 LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSY Sbjct 241 LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSY 300 Query 301 REMLRERVAPLIAKYRLAG 319 REMLRERVAPLIAKY + G Sbjct 301 REMLRERVAPLIAKYPVGG 319 >gi|308369758|ref|ZP_07418953.2| hypothetical protein TMBG_01118 [Mycobacterium tuberculosis SUMu002] gi|308371060|ref|ZP_07423701.2| hypothetical protein TMCG_01823 [Mycobacterium tuberculosis SUMu003] gi|308374620|ref|ZP_07436760.2| hypothetical protein TMFG_03806 [Mycobacterium tuberculosis SUMu006] gi|308377059|ref|ZP_07441005.2| hypothetical protein TMHG_01772 [Mycobacterium tuberculosis SUMu008] gi|308326550|gb|EFP15401.1| hypothetical protein TMBG_01118 [Mycobacterium tuberculosis SUMu002] gi|308329972|gb|EFP18823.1| hypothetical protein TMCG_01823 [Mycobacterium tuberculosis SUMu003] gi|308341281|gb|EFP30132.1| hypothetical protein TMFG_03806 [Mycobacterium tuberculosis SUMu006] gi|308349089|gb|EFP37940.1| hypothetical protein TMHG_01772 [Mycobacterium tuberculosis SUMu008] Length=295 Score = 598 bits (1542), Expect = 4e-169, Method: Compositional matrix adjust. Identities = 294/295 (99%), Positives = 295/295 (100%), Gaps = 0/295 (0%) Query 46 LCKSALNKVPNAAALPFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTN 105 +CKSALNKVPNAAALPFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTN Sbjct 1 MCKSALNKVPNAAALPFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTN 60 Query 106 VAAVLRHELRRPSWRRETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTL 165 VAAVLRHELRRPSWRRETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTL Sbjct 61 VAAVLRHELRRPSWRRETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTL 120 Query 166 LRRDLPLIAEAAQQVPVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHV 225 LRRDLPLIAEAAQQVPVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHV Sbjct 121 LRRDLPLIAEAAQQVPVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHV 180 Query 226 MVAPVLPQLTDSGEHLDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSR 285 MVAPVLPQLTDSGEHLDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSR Sbjct 181 MVAPVLPQLTDSGEHLDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSR 240 Query 286 YRELYRRGPYLPPSYREMLRERVAPLIAKYRLAGDHRPAPPETEAALVPVQATLF 340 YRELYRRGPYLPPSYREMLRERVAPLIAKYRLAGDHRPAPPETEAALVPVQATLF Sbjct 241 YRELYRRGPYLPPSYREMLRERVAPLIAKYRLAGDHRPAPPETEAALVPVQATLF 295 >gi|254823300|ref|ZP_05228301.1| hypothetical protein MintA_25454 [Mycobacterium intracellulare ATCC 13950] Length=341 Score = 589 bits (1518), Expect = 3e-166, Method: Compositional matrix adjust. Identities = 293/341 (86%), Positives = 303/341 (89%), Gaps = 1/341 (0%) Query 1 MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL 60 MRWA QAVAVNG PV+DGALPGLQRIG VRSVR+PQFDGITFHEVLCKSALNKVPNA+AL Sbjct 1 MRWASQAVAVNGKPVEDGALPGLQRIGFVRSVRSPQFDGITFHEVLCKSALNKVPNASAL 60 Query 61 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR 120 PFRYTVNGYRGCSHACRYCFARPTHEYL+ + G DFDTQVVVKTNVA VLR ELRRPSW+ Sbjct 61 PFRYTVNGYRGCSHACRYCFARPTHEYLELDCGNDFDTQVVVKTNVAEVLRRELRRPSWQ 120 Query 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV 180 RETVALGTNTDPYQRAEGRYALMPGIIGALA SGTPLSILTKGTLLRRDLPLIA+AA QV Sbjct 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAESGTPLSILTKGTLLRRDLPLIADAAAQV 180 Query 181 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH 240 PVSVAVSLAVGD ELHRDVE GTPTPQARL LI AI AAGL+CHVMVAPVLP LTDS EH Sbjct 181 PVSVAVSLAVGDAELHRDVEPGTPTPQARLGLIGAITAAGLNCHVMVAPVLPYLTDSAEH 240 Query 241 LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSY 300 LD LLGQIAAAGA VTVFGLHLR STRGWFM WLAR+HPELV RYRELYRRG YLP Y Sbjct 241 LDALLGQIAAAGAGSVTVFGLHLRSSTRGWFMSWLARSHPELVGRYRELYRRGAYLPQGY 300 Query 301 REMLRERVAPLIAKYRLAGDHRPAPPETEAAL-VPVQATLF 340 R+MLRER APLIAKYRLAGDHRP A PVQ TLF Sbjct 301 RDMLRERAAPLIAKYRLAGDHRPFSQAVSAETPQPVQETLF 341 >gi|41407152|ref|NP_959988.1| hypothetical protein MAP1054 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395503|gb|AAS03371.1| hypothetical protein MAP_1054 [Mycobacterium avium subsp. paratuberculosis K-10] gi|336461518|gb|EGO40386.1| DNA repair photolyase [Mycobacterium avium subsp. paratuberculosis S397] Length=342 Score = 588 bits (1517), Expect = 3e-166, Method: Compositional matrix adjust. Identities = 289/323 (90%), Positives = 299/323 (93%), Gaps = 0/323 (0%) Query 1 MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL 60 MRWA QAVAVNG PV+DGALPGLQR+GLVRSVRAPQF+GITFHEVLCKSALNKVPNA+AL Sbjct 1 MRWASQAVAVNGKPVEDGALPGLQRLGLVRSVRAPQFEGITFHEVLCKSALNKVPNASAL 60 Query 61 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR 120 PFRYTVNGYRGCSHACRYCFARP+HEYL+ N G DFDTQVVVKTNVA VLR ELRRPSWR Sbjct 61 PFRYTVNGYRGCSHACRYCFARPSHEYLELNCGNDFDTQVVVKTNVAQVLRRELRRPSWR 120 Query 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV 180 RETVALGTNTDPYQRAEGRYALMPGIIGALA SGTPLSILTKGTLLRRDLPLIA AA QV Sbjct 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAESGTPLSILTKGTLLRRDLPLIANAAAQV 180 Query 181 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH 240 PVSVAVSLAVGD +LHRDVE GTPTPQARL LI+AIRAAGLDCHVMVAPVLP LTDS EH Sbjct 181 PVSVAVSLAVGDADLHRDVEPGTPTPQARLGLISAIRAAGLDCHVMVAPVLPYLTDSVEH 240 Query 241 LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSY 300 LD LLGQIAAAGA VTVFGLHLRGSTRGWFM WLAR+HPELV RYRELYRRG YLPPSY Sbjct 241 LDDLLGQIAAAGAGSVTVFGLHLRGSTRGWFMEWLARSHPELVGRYRELYRRGAYLPPSY 300 Query 301 REMLRERVAPLIAKYRLAGDHRP 323 R+MLR R APLIAKYRL GDHRP Sbjct 301 RDMLRHRAAPLIAKYRLGGDHRP 323 >gi|118466152|ref|YP_882638.1| radical SAM domain-containing protein [Mycobacterium avium 104] gi|118167439|gb|ABK68336.1| radical SAM domain protein [Mycobacterium avium 104] Length=342 Score = 584 bits (1505), Expect = 7e-165, Method: Compositional matrix adjust. Identities = 287/322 (90%), Positives = 297/322 (93%), Gaps = 0/322 (0%) Query 1 MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL 60 MRWA QAVAVNG PV+DGALPGLQR+GLVRSVRAPQF+GITFHEVLCKSALNKVPNA+AL Sbjct 1 MRWASQAVAVNGKPVEDGALPGLQRLGLVRSVRAPQFEGITFHEVLCKSALNKVPNASAL 60 Query 61 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR 120 PFRYTVNGYRGCSHACRYCFARP+HEYL+ N G DFDTQVVVKTNVA VLR ELRRPSWR Sbjct 61 PFRYTVNGYRGCSHACRYCFARPSHEYLELNCGNDFDTQVVVKTNVAQVLRRELRRPSWR 120 Query 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV 180 RETVALGTNTDPYQRAEGRYALMPGIIGALA SGTPLSILTKGTLLRRDLPLIA AA QV Sbjct 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAESGTPLSILTKGTLLRRDLPLIANAAAQV 180 Query 181 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH 240 PVSVAVSLAVGD +LHRDVE GTPTPQARL LI+AIRAAGLDCHVMVAPVLP LTDS EH Sbjct 181 PVSVAVSLAVGDADLHRDVEPGTPTPQARLGLISAIRAAGLDCHVMVAPVLPYLTDSVEH 240 Query 241 LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSY 300 LD LLGQIAAAGA VTVFGLHLRGSTRGWFM WLAR+HPELV RYRELY RG YLPPSY Sbjct 241 LDDLLGQIAAAGAGSVTVFGLHLRGSTRGWFMEWLARSHPELVGRYRELYSRGAYLPPSY 300 Query 301 REMLRERVAPLIAKYRLAGDHR 322 R+MLR R APLIAKYRL GDHR Sbjct 301 RDMLRHRAAPLIAKYRLGGDHR 322 >gi|254775899|ref|ZP_05217415.1| radical SAM domain-containing protein [Mycobacterium avium subsp. avium ATCC 25291] Length=342 Score = 577 bits (1488), Expect = 8e-163, Method: Compositional matrix adjust. Identities = 285/322 (89%), Positives = 295/322 (92%), Gaps = 0/322 (0%) Query 1 MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL 60 MRWA QAVAVNG PV+DGALPGLQR+GLVRSVRAPQF+GITFHEVLCKSALNKVPNA+AL Sbjct 1 MRWASQAVAVNGKPVEDGALPGLQRLGLVRSVRAPQFEGITFHEVLCKSALNKVPNASAL 60 Query 61 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR 120 FRYTVNGYRGCSHACRYCFARP+HEYL+ N G DFDTQVVVKTNVA VLR ELRRPSWR Sbjct 61 LFRYTVNGYRGCSHACRYCFARPSHEYLELNCGNDFDTQVVVKTNVAQVLRRELRRPSWR 120 Query 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV 180 RETVALGTNTDPYQRAEGRYALMPGIIGALA SGTPLSILTKGTLLRRDLPLIA AA QV Sbjct 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAESGTPLSILTKGTLLRRDLPLIANAAAQV 180 Query 181 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH 240 PVSVAVSLAVGD +LHRDVE GTPTPQARL LI+AIRAAGLDCHVMVAPVLP LTDS EH Sbjct 181 PVSVAVSLAVGDADLHRDVEPGTPTPQARLGLISAIRAAGLDCHVMVAPVLPYLTDSVEH 240 Query 241 LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSY 300 LD LLGQIAAAGA VTVFGLHLRGSTRGWFM WLAR+HPELV RYRELY R YLPPSY Sbjct 241 LDDLLGQIAAAGAGSVTVFGLHLRGSTRGWFMEWLARSHPELVGRYRELYSRRAYLPPSY 300 Query 301 REMLRERVAPLIAKYRLAGDHR 322 R+MLR R APLIAKYRL GDHR Sbjct 301 RDMLRHRAAPLIAKYRLGGDHR 322 >gi|342858600|ref|ZP_08715255.1| hypothetical protein MCOL_06981 [Mycobacterium colombiense CECT 3035] gi|342134304|gb|EGT87484.1| hypothetical protein MCOL_06981 [Mycobacterium colombiense CECT 3035] Length=342 Score = 574 bits (1479), Expect = 8e-162, Method: Compositional matrix adjust. Identities = 292/342 (86%), Positives = 308/342 (91%), Gaps = 2/342 (0%) Query 1 MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL 60 MRWA QAVAVNG PV+DGALPGLQRIG +RSVR+PQFDGITFHEV+CKSALNKVPNAAAL Sbjct 1 MRWANQAVAVNGTPVEDGALPGLQRIGFLRSVRSPQFDGITFHEVVCKSALNKVPNAAAL 60 Query 61 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR 120 PFRYTVNGYRGCSHACRYCFARPTHEYL+ + G DFDTQVVVKTNV VLR ELRRPSW+ Sbjct 61 PFRYTVNGYRGCSHACRYCFARPTHEYLELDCGNDFDTQVVVKTNVVEVLRRELRRPSWQ 120 Query 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV 180 RETVALGTNTDPYQRAEGRYALMPGIIGALA SGTPLSILTKGTLLRRDLPLI++AA QV Sbjct 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAESGTPLSILTKGTLLRRDLPLISQAASQV 180 Query 181 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH 240 PVSVAVSLAVGDPELH+DVE GTPTPQARL LI+AIRAAGLDCHVMVAPVLP LTDS E Sbjct 181 PVSVAVSLAVGDPELHKDVEPGTPTPQARLGLISAIRAAGLDCHVMVAPVLPHLTDSAEQ 240 Query 241 LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSY 300 LD LLGQIAAAGA+ VTVFGLHLR STRGWFM WLAR+HPELV RYRELYRRG YLPP Y Sbjct 241 LDGLLGQIAAAGASSVTVFGLHLRSSTRGWFMAWLARSHPELVGRYRELYRRGAYLPPGY 300 Query 301 REMLRERVAPLIAKYRLAGDHRPAPPETEAALVP--VQATLF 340 R+MLR+R APLIAK+RLAGDHRP A VP VQATLF Sbjct 301 RDMLRQRAAPLIAKHRLAGDHRPFSRAVSPAPVPKAVQATLF 342 >gi|296170810|ref|ZP_06852381.1| radical SAM domain protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894546|gb|EFG74284.1| radical SAM domain protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=342 Score = 566 bits (1460), Expect = 1e-159, Method: Compositional matrix adjust. Identities = 292/344 (85%), Positives = 305/344 (89%), Gaps = 6/344 (1%) Query 1 MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL 60 MRWA QAVAVNG PV+DGALPGLQRIGLVRSVRAPQF+GITFHEVLCKSALNKVP A+AL Sbjct 1 MRWADQAVAVNGAPVEDGALPGLQRIGLVRSVRAPQFEGITFHEVLCKSALNKVPGASAL 60 Query 61 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR 120 PFRYTVNGYRGCSHACRYCFARPTHEYLDFN G DFD+QV+VKTNVA VLR ELRRPSWR Sbjct 61 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNCGNDFDSQVIVKTNVAEVLRRELRRPSWR 120 Query 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV 180 RETVALGTNTDPYQRAEGRYALMPGII ALA SGTPLSILTKGTLLRRDLPLIA+AAQ+V Sbjct 121 RETVALGTNTDPYQRAEGRYALMPGIIAALAESGTPLSILTKGTLLRRDLPLIADAAQRV 180 Query 181 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH 240 P+SVAVSLAVGDP+LHRDVE GTPTPQARL LI AIR AGLDCHVMVAPVLP LTDS EH Sbjct 181 PLSVAVSLAVGDPDLHRDVEPGTPTPQARLGLIAAIRDAGLDCHVMVAPVLPHLTDSTEH 240 Query 241 LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSY 300 LD+LLGQIAAAGATG TVFGLHLRGSTRGWFM WL R+HPELV+ YRELYRRG YLPP Y Sbjct 241 LDRLLGQIAAAGATGATVFGLHLRGSTRGWFMSWLGRSHPELVAPYRELYRRGAYLPPGY 300 Query 301 REMLRERVAPLIAKYRLAGDHR----PAPPETEAALVPVQATLF 340 RE LR R APLIAKYRL G+ R P P E VQATLF Sbjct 301 RETLRARAAPLIAKYRLGGEQRSFRQPVAPRAEPEC--VQATLF 342 >gi|240171987|ref|ZP_04750646.1| hypothetical protein MkanA1_21915 [Mycobacterium kansasii ATCC 12478] Length=342 Score = 566 bits (1459), Expect = 2e-159, Method: Compositional matrix adjust. Identities = 289/342 (85%), Positives = 305/342 (90%), Gaps = 2/342 (0%) Query 1 MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL 60 MRW QAVAVNG PVDDGALPGLQRIG VRSVR+P F+G+TFHEVLCKSALN+VPNAAAL Sbjct 1 MRWTSQAVAVNGTPVDDGALPGLQRIGFVRSVRSPHFEGMTFHEVLCKSALNRVPNAAAL 60 Query 61 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR 120 PFRYT+NGYRGCSHACRYCFARPTHEYLDF+PG DFDTQVVVKTNV AVLR ELRRPSW+ Sbjct 61 PFRYTINGYRGCSHACRYCFARPTHEYLDFDPGADFDTQVVVKTNVVAVLRRELRRPSWQ 120 Query 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV 180 RETVALGTNTDPYQRAEGRYALMPGIIGALA SGTPLSILTKGTLLRRD+PL+ EAA+QV Sbjct 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAESGTPLSILTKGTLLRRDVPLLVEAARQV 180 Query 181 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH 240 PVSVAVSLAV DPELHR VE GTPTPQ RL LITAIR AGL CHVMVAPVLP LTDS H Sbjct 181 PVSVAVSLAVADPELHRHVEPGTPTPQTRLGLITAIREAGLGCHVMVAPVLPHLTDSVGH 240 Query 241 LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSY 300 LD LLGQIAAAGATGVTVFGLHLRGSTR WF+ WL RA+PELV RYRELY RG YLPPSY Sbjct 241 LDGLLGQIAAAGATGVTVFGLHLRGSTRDWFLSWLGRAYPELVGRYRELYGRGAYLPPSY 300 Query 301 REMLRERVAPLIAKYRLAGDHRPAPPETEAALVP--VQATLF 340 REMLR+R APLIAKYRL G+HR P EAA++P VQ TLF Sbjct 301 REMLRKRAAPLIAKYRLGGEHRELSPAAEAAILPKSVQPTLF 342 >gi|183982161|ref|YP_001850452.1| hypothetical protein MMAR_2148 [Mycobacterium marinum M] gi|183175487|gb|ACC40597.1| conserved hypothetical protein [Mycobacterium marinum M] Length=342 Score = 561 bits (1446), Expect = 6e-158, Method: Compositional matrix adjust. Identities = 283/342 (83%), Positives = 306/342 (90%), Gaps = 2/342 (0%) Query 1 MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL 60 MRW QA+AVNG PVDDGALPGLQRIGLVRSVR+P F+G+TFHEVLCKSALNKVPNAAAL Sbjct 1 MRWCAQALAVNGEPVDDGALPGLQRIGLVRSVRSPHFEGMTFHEVLCKSALNKVPNAAAL 60 Query 61 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR 120 PFRYTVNGYRGC+HACRYCFARPTHEYLDF+ G DFDTQ+VVKTNVA VLR ELRRPSWR Sbjct 61 PFRYTVNGYRGCTHACRYCFARPTHEYLDFDSGADFDTQIVVKTNVAEVLRRELRRPSWR 120 Query 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV 180 RETVALGTNTDPYQRAEGRYALMPGIIGALA SGTPLSILTKGTLLRRDLPL+AE + QV Sbjct 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAGSGTPLSILTKGTLLRRDLPLLAEVSGQV 180 Query 181 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH 240 PVSVAVSLA+ DP+LH+++E GTP PQARL LI AIR AGLDCHVMVAPVLP LTDS H Sbjct 181 PVSVAVSLAIADPDLHKEIEPGTPAPQARLGLIAAIRDAGLDCHVMVAPVLPHLTDSAAH 240 Query 241 LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSY 300 LD LLGQIAAAGATGVT FGLHLRG+TRGWFM WLARAHP+LV YRELYRRG YLPP Y Sbjct 241 LDLLLGQIAAAGATGVTAFGLHLRGATRGWFMSWLARAHPDLVGTYRELYRRGAYLPPYY 300 Query 301 REMLRERVAPLIAKYRLAGDHRPAPPETEAALVPV--QATLF 340 R+MLR+RVAPL+AK+RL G RP+ P EA ++PV QATLF Sbjct 301 RDMLRQRVAPLVAKHRLGGTPRPSSPVAEAEVMPVPEQATLF 342 >gi|118617357|ref|YP_905689.1| hypothetical protein MUL_1734 [Mycobacterium ulcerans Agy99] gi|118569467|gb|ABL04218.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length=342 Score = 557 bits (1435), Expect = 1e-156, Method: Compositional matrix adjust. Identities = 281/342 (83%), Positives = 304/342 (89%), Gaps = 2/342 (0%) Query 1 MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL 60 MRW QA+AVNG PVDDGALPGLQRIGLVRSVR+P F+G+TFHEVLCKSALNKVPNAAAL Sbjct 1 MRWCAQALAVNGEPVDDGALPGLQRIGLVRSVRSPHFEGMTFHEVLCKSALNKVPNAAAL 60 Query 61 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR 120 PFRYTVNGYRGC HACRYCFARP HEYLDF+ G DFDTQ+VVKTNVA VLR ELRRPSWR Sbjct 61 PFRYTVNGYRGCMHACRYCFARPIHEYLDFDSGADFDTQIVVKTNVAEVLRRELRRPSWR 120 Query 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV 180 R+TVALGTNTDPYQRAEGRYALMPGIIGALA SGTPLSILTKGTLLRRDLPL+AE + QV Sbjct 121 RKTVALGTNTDPYQRAEGRYALMPGIIGALAGSGTPLSILTKGTLLRRDLPLLAEVSGQV 180 Query 181 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH 240 PVSVAVSLA+ DP+LH+++E GTP PQARL LI AIR AGLDCHVMVAPVLP LTDS H Sbjct 181 PVSVAVSLAIADPDLHKEIEPGTPAPQARLGLIAAIRDAGLDCHVMVAPVLPHLTDSAAH 240 Query 241 LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSY 300 LD LLGQIAAAGATGVT FGLHLRG+TRGWFM WLARAHP+LV YRELYRRG YLPP Y Sbjct 241 LDLLLGQIAAAGATGVTAFGLHLRGATRGWFMSWLARAHPDLVGTYRELYRRGAYLPPYY 300 Query 301 REMLRERVAPLIAKYRLAGDHRPAPPETEAALVPV--QATLF 340 R+MLR+RVAPL+AK+RL G RP+ P EA ++PV QATLF Sbjct 301 RDMLRQRVAPLVAKHRLGGTPRPSSPVAEAEVMPVPEQATLF 342 >gi|118468989|ref|YP_887308.1| Fe-S protein, radical SAM family protein [Mycobacterium smegmatis str. MC2 155] gi|118170276|gb|ABK71172.1| Fe-S protein, radical SAM family protein [Mycobacterium smegmatis str. MC2 155] Length=344 Score = 523 bits (1346), Expect = 2e-146, Method: Compositional matrix adjust. Identities = 263/344 (77%), Positives = 286/344 (84%), Gaps = 9/344 (2%) Query 1 MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL 60 +RW QAV V DDGALPGL R+G VRSVRAP+F+GITFHEVLCKSALNKVP A+AL Sbjct 6 VRWDEQAVRV-----DDGALPGLARVGFVRSVRAPEFEGITFHEVLCKSALNKVPAASAL 60 Query 61 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR 120 PFR+TVNGYRGC+HACRYCFARPTHEYLDF+PG DFD Q+VVKTNV VLR ELRRPSW Sbjct 61 PFRFTVNGYRGCTHACRYCFARPTHEYLDFDPGVDFDRQIVVKTNVVEVLRRELRRPSWT 120 Query 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV 180 ETVALGTNTDPYQRAEGRYALMPGIIGALA S TP SILTKGTLLRRDL LIAEAA++V Sbjct 121 HETVALGTNTDPYQRAEGRYALMPGIIGALADSYTPFSILTKGTLLRRDLGLIAEAARRV 180 Query 181 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH 240 VSVAVSLA+GD +LHRD+E GTP+PQARLALI+AIR AGL CHVMVAPVLP LTDS EH Sbjct 181 EVSVAVSLAIGDADLHRDIEPGTPSPQARLALISAIRDAGLSCHVMVAPVLPYLTDSAEH 240 Query 241 LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSY 300 LD LLG+IA AGAT VT FGLHLRGSTRGWFM WLA +HPELV +YR+LYR+G YLP Y Sbjct 241 LDDLLGRIAEAGATSVTAFGLHLRGSTRGWFMSWLASSHPELVWKYRQLYRKGAYLPAEY 300 Query 301 REMLRERVAPLIAKYRLAGDHRPAPPETEAALV----PVQATLF 340 R ML +RV PLI K+ LAG R PET V PVQA LF Sbjct 301 RHMLHDRVQPLIVKHGLAGQPRMPAPETPTPQVARPEPVQAALF 344 >gi|126434921|ref|YP_001070612.1| radical SAM domain-containing protein [Mycobacterium sp. JLS] gi|126234721|gb|ABN98121.1| Radical SAM domain protein [Mycobacterium sp. JLS] Length=358 Score = 518 bits (1334), Expect = 5e-145, Method: Compositional matrix adjust. Identities = 272/343 (80%), Positives = 289/343 (85%), Gaps = 8/343 (2%) Query 1 MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL 60 MRW+ Q G+ VDDGALPGLQRIGLVRSVR PQF+G+TFHEVLCKSALNKVPNA+ L Sbjct 21 MRWSGQ-----GVEVDDGALPGLQRIGLVRSVRTPQFEGMTFHEVLCKSALNKVPNASML 75 Query 61 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR 120 PF+YTVN YRGCSHACRYCFARPTHEYLDF+ G DFDTQVVVKTNV VLR ELRRPSW Sbjct 76 PFQYTVNAYRGCSHACRYCFARPTHEYLDFDIGIDFDTQVVVKTNVVDVLRRELRRPSWT 135 Query 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV 180 ETVALGTNTDPYQRAEGRYALMPGII AL SGTP SILTKGTLLRRDLPLIAEAA++V Sbjct 136 GETVALGTNTDPYQRAEGRYALMPGIIAALRDSGTPFSILTKGTLLRRDLPLIAEAARRV 195 Query 181 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH 240 PVSVAVSLAVGDP+LHRDVE GTP+PQARLALI AIR AGLDCHVMVAPVLP+LTDS H Sbjct 196 PVSVAVSLAVGDPDLHRDVEPGTPSPQARLALIAAIREAGLDCHVMVAPVLPRLTDSVAH 255 Query 241 LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSY 300 LD LLG+IAAAGA TVFGLHLRG+TRGWFM WLARAHPELV YR LYRRG YLP Y Sbjct 256 LDALLGEIAAAGARSATVFGLHLRGATRGWFMAWLARAHPELVGEYRTLYRRGAYLPADY 315 Query 301 REMLRERVAPLIAKYRLAGDHRPAPP---ETEAALVPVQATLF 340 REMLR R APL+A++ LAG R P AA PVQ TLF Sbjct 316 REMLRARAAPLLARHGLAGGPRRTEPLVGSVPAAAGPVQPTLF 358 >gi|108799263|ref|YP_639460.1| radical SAM family protein [Mycobacterium sp. MCS] gi|119868379|ref|YP_938331.1| radical SAM domain-containing protein [Mycobacterium sp. KMS] gi|108769682|gb|ABG08404.1| Radical SAM [Mycobacterium sp. MCS] gi|119694468|gb|ABL91541.1| Radical SAM domain protein [Mycobacterium sp. KMS] Length=341 Score = 518 bits (1334), Expect = 5e-145, Method: Compositional matrix adjust. Identities = 272/343 (80%), Positives = 289/343 (85%), Gaps = 8/343 (2%) Query 1 MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL 60 MRW+ Q G+ VDDGALPGLQRIGLVRSVR PQF+G+TFHEVLCKSALNKVPNA+ L Sbjct 4 MRWSGQ-----GVEVDDGALPGLQRIGLVRSVRTPQFEGMTFHEVLCKSALNKVPNASML 58 Query 61 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR 120 PF+YTVN YRGCSHACRYCFARPTHEYLDF+ G DFDTQVVVKTNV VLR ELRRPSW Sbjct 59 PFQYTVNAYRGCSHACRYCFARPTHEYLDFDIGIDFDTQVVVKTNVVDVLRRELRRPSWT 118 Query 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV 180 ETVALGTNTDPYQRAEGRYALMPGII AL SGTP SILTKGTLLRRDLPLIAEAA++V Sbjct 119 GETVALGTNTDPYQRAEGRYALMPGIIAALRDSGTPFSILTKGTLLRRDLPLIAEAARRV 178 Query 181 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH 240 PVSVAVSLAVGDP+LHRDVE GTP+PQARLALI AIR AGLDCHVMVAPVLP+LTDS H Sbjct 179 PVSVAVSLAVGDPDLHRDVEPGTPSPQARLALIAAIREAGLDCHVMVAPVLPRLTDSVAH 238 Query 241 LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSY 300 LD LLG+IAAAGA TVFGLHLRG+TRGWFM WLARAHPELV YR LYRRG YLP Y Sbjct 239 LDALLGEIAAAGARSATVFGLHLRGATRGWFMAWLARAHPELVGEYRTLYRRGAYLPADY 298 Query 301 REMLRERVAPLIAKYRLAGDHRPAPP---ETEAALVPVQATLF 340 REMLR R APL+A++ LAG R P AA PVQ TLF Sbjct 299 REMLRARAAPLLARHGLAGGPRRTEPLVGSVPAAAGPVQPTLF 341 >gi|120403584|ref|YP_953413.1| radical SAM domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119956402|gb|ABM13407.1| Radical SAM domain protein [Mycobacterium vanbaalenii PYR-1] Length=338 Score = 514 bits (1323), Expect = 1e-143, Method: Compositional matrix adjust. Identities = 264/345 (77%), Positives = 285/345 (83%), Gaps = 12/345 (3%) Query 1 MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL 60 MRWA Q G+ VDDGALPGLQRIGL+RSVR PQFDGITFHEVLCKSALNK+P A+ L Sbjct 1 MRWAGQ-----GIDVDDGALPGLQRIGLIRSVRTPQFDGITFHEVLCKSALNKIPAASML 55 Query 61 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR 120 PFRYTVNGYRGCSHACRYCFARPTHEYLDF+ G DFDTQVVVKTNVA VLR ELRRPSW Sbjct 56 PFRYTVNGYRGCSHACRYCFARPTHEYLDFDSGRDFDTQVVVKTNVADVLRRELRRPSWT 115 Query 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV 180 RETVALGTNTDPYQRAEGRYALMPGIIGAL GTP SILTKGTLLRRDLPL+ EAA++V Sbjct 116 RETVALGTNTDPYQRAEGRYALMPGIIGALTDFGTPFSILTKGTLLRRDLPLLTEAARRV 175 Query 181 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH 240 VSVAVSLAVGD ELH VE GTP+P+ARL LI+AIR+AGL CHVMVAPVLP LTDS +H Sbjct 176 DVSVAVSLAVGDAELHSLVEPGTPSPEARLGLISAIRSAGLSCHVMVAPVLPGLTDSRDH 235 Query 241 LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSY 300 LD LLG+IAAAGAT TVFGLHLRGSTRGWFM WLAR +P+LV YR LYRRG YLPP Y Sbjct 236 LDDLLGRIAAAGATSATVFGLHLRGSTRGWFMDWLARTYPDLVGEYRRLYRRGAYLPPEY 295 Query 301 REMLRERVAPLIAKYRLAGDHRPAPPETEAALVPV-----QATLF 340 R L VAPL+A++RLA P ++VPV QATLF Sbjct 296 RAELARTVAPLMARHRLA--AAPRMAAPAPSVVPVTAGSLQATLF 338 >gi|289762749|ref|ZP_06522127.1| DNA repair photolyase [Mycobacterium tuberculosis GM 1503] gi|289710255|gb|EFD74271.1| DNA repair photolyase [Mycobacterium tuberculosis GM 1503] Length=242 Score = 491 bits (1264), Expect = 7e-137, Method: Compositional matrix adjust. Identities = 241/241 (100%), Positives = 241/241 (100%), Gaps = 0/241 (0%) Query 1 MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL 60 MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL Sbjct 1 MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL 60 Query 61 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR 120 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR Sbjct 61 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR 120 Query 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV 180 RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV Sbjct 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV 180 Query 181 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH 240 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH Sbjct 181 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH 240 Query 241 L 241 L Sbjct 241 L 241 >gi|169629952|ref|YP_001703601.1| hypothetical protein MAB_2868c [Mycobacterium abscessus ATCC 19977] gi|169241919|emb|CAM62947.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=335 Score = 490 bits (1261), Expect = 1e-136, Method: Compositional matrix adjust. Identities = 242/341 (71%), Positives = 277/341 (82%), Gaps = 7/341 (2%) Query 1 MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL 60 MRW QA+A DDGALPGL+RIGLVRSVR P+F+GITFHEVLCKSALNKVP + L Sbjct 1 MRWDGQALAA-----DDGALPGLERIGLVRSVRTPEFEGITFHEVLCKSALNKVPTVSML 55 Query 61 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR 120 PFR+TVN +RGC+HACRYCFARPTHEYL+F+ G DFD Q+VVKTNV VLR EL R SW Sbjct 56 PFRFTVNAFRGCAHACRYCFARPTHEYLEFDSGADFDNQIVVKTNVVPVLRKELGRKSWG 115 Query 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV 180 RETVALGTNTDPYQRAEGRY LMPG+IGALA SGTP+SILTKGTLLRRDLPL++EAA QV Sbjct 116 RETVALGTNTDPYQRAEGRYQLMPGVIGALADSGTPISILTKGTLLRRDLPLLSEAAGQV 175 Query 181 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH 240 PVS+ +SLA+GD LHR+VESG P+PQARLALI+A AG HVMVAPVLP LTD+ EH Sbjct 176 PVSLGISLAIGDEVLHREVESGVPSPQARLALISAACEAGFQPHVMVAPVLPFLTDTVEH 235 Query 241 LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSY 300 LD LLG+IA AGA GVTVF LHLRG+TRGWFM W++ +HPELV RYRELYR+G Y+P Y Sbjct 236 LDDLLGRIADAGAAGVTVFPLHLRGTTRGWFMSWISHSHPELVGRYRELYRKGAYVPAEY 295 Query 301 REMLRERVAPLIAKYRLAGDHRPAPPETEAALVP-VQATLF 340 R LRERV PL+ K+RL+ HR P + P ++ TLF Sbjct 296 RAWLRERVGPLVQKHRLS-SHREETPTRPVKMAPALEPTLF 335 >gi|145224377|ref|YP_001135055.1| radical SAM domain-containing protein [Mycobacterium gilvum PYR-GCK] gi|315444709|ref|YP_004077588.1| DNA repair photolyase [Mycobacterium sp. Spyr1] gi|145216863|gb|ABP46267.1| Radical SAM domain protein [Mycobacterium gilvum PYR-GCK] gi|315263012|gb|ADT99753.1| DNA repair photolyase [Mycobacterium sp. Spyr1] Length=339 Score = 479 bits (1234), Expect = 2e-133, Method: Compositional matrix adjust. Identities = 258/344 (75%), Positives = 283/344 (83%), Gaps = 9/344 (2%) Query 1 MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL 60 MRWA Q VAV DDGALPGLQR+GLVRSVR PQFDGITFHEVLCK+ALNK+P A+ L Sbjct 1 MRWAGQGVAV-----DDGALPGLQRLGLVRSVRTPQFDGITFHEVLCKTALNKIPAASML 55 Query 61 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR 120 PFR+TVNGYRGCSHACRYCFARPTHEYL+F+PG DFDTQVVVKTNVA VLR ELRRPSW Sbjct 56 PFRFTVNGYRGCSHACRYCFARPTHEYLEFDPGRDFDTQVVVKTNVAEVLRRELRRPSWS 115 Query 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV 180 RETVALGTNTDPYQRAEGRYALMPGIIGAL GTP SILTKGTLLRRDLPL+ +A+++V Sbjct 116 RETVALGTNTDPYQRAEGRYALMPGIIGALTDFGTPFSILTKGTLLRRDLPLLTDASRRV 175 Query 181 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH 240 VSVAVSLAVGDP+LH +E GTPTP+ARL+LI+AIR AGL CHVMVAPVLP LTDS +H Sbjct 176 DVSVAVSLAVGDPDLHGRLEPGTPTPEARLSLISAIREAGLRCHVMVAPVLPGLTDSDDH 235 Query 241 LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSY 300 LD LLG+IA AGAT TVFGLHLRGSTRGWFM WLA A+P+LV YR LYRRG YLP Y Sbjct 236 LDDLLGRIAGAGATSATVFGLHLRGSTRGWFMDWLAEAYPDLVGEYRRLYRRGAYLPAEY 295 Query 301 REMLRERVAPLIAKYRLAGDHRPAPPETEAALV----PVQATLF 340 R L R APL+A++ LA R A P A V +Q TLF Sbjct 296 RADLACRAAPLLARHGLARAPRFAAPLPGAGPVDAAPELQPTLF 339 >gi|111024073|ref|YP_707045.1| DNA repair photolyase [Rhodococcus jostii RHA1] gi|110823603|gb|ABG98887.1| possible DNA repair photolyase [Rhodococcus jostii RHA1] Length=347 Score = 461 bits (1185), Expect = 1e-127, Method: Compositional matrix adjust. Identities = 227/326 (70%), Positives = 261/326 (81%), Gaps = 7/326 (2%) Query 1 MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL 60 MRW QAV DDGALPGL+R GLVRSV+ P+FDGITFHEVLCKSALNK+P + L Sbjct 1 MRWDGQAVDA-----DDGALPGLERAGLVRSVQTPEFDGITFHEVLCKSALNKMPEESQL 55 Query 61 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR 120 PFR+TVN +RGCSH+CRYCFARPTHEYLD + G DFD+Q+VVKTNVAAVLR EL R SW+ Sbjct 56 PFRFTVNAFRGCSHSCRYCFARPTHEYLDLDAGRDFDSQIVVKTNVAAVLRKELGRRSWK 115 Query 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV 180 RE VALGTNTDPYQRAEGRY LMPGII ALA S TP SILTKGTLLRRDLPL+ AAQQV Sbjct 116 REHVALGTNTDPYQRAEGRYRLMPGIIRALAESATPFSILTKGTLLRRDLPLLTLAAQQV 175 Query 181 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH 240 PVS+ VSLA+ DP+L + +E GTPTP+ARL LI AI AGL C+VMVAPV+P LTDS H Sbjct 176 PVSIGVSLAIHDPDLQKSIEPGTPTPKARLDLIRAITDAGLPCNVMVAPVIPFLTDSVRH 235 Query 241 LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSY 300 LD LL IA AGA+GVTVF +HLRGST+GWFM WL+ HP LV +YR+LY R Y+PP Y Sbjct 236 LDGLLESIADAGASGVTVFPMHLRGSTKGWFMNWLSTEHPALVRQYRQLYGRAAYVPPEY 295 Query 301 REMLRERVAPLIAKYRLAG--DHRPA 324 + L++RV PL+ +Y L G +HR A Sbjct 296 KSWLKQRVDPLVDRYDLGGGANHREA 321 >gi|226366313|ref|YP_002784096.1| hypothetical protein ROP_69040 [Rhodococcus opacus B4] gi|226244803|dbj|BAH55151.1| hypothetical protein [Rhodococcus opacus B4] Length=344 Score = 458 bits (1179), Expect = 4e-127, Method: Compositional matrix adjust. Identities = 227/326 (70%), Positives = 260/326 (80%), Gaps = 7/326 (2%) Query 1 MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL 60 MRW QAV V DDGALPGL+R GLVRSV+ P+FDGITFHEVLCKSALNK+P + L Sbjct 1 MRWDGQAVDV-----DDGALPGLERAGLVRSVQTPEFDGITFHEVLCKSALNKMPEESQL 55 Query 61 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR 120 PFR+TVN +RGCSH+CRYCFARPTHEYLD + G DFD+Q+VVKTNVAAVLR EL R SW+ Sbjct 56 PFRFTVNAFRGCSHSCRYCFARPTHEYLDLDAGRDFDSQIVVKTNVAAVLRKELGRRSWK 115 Query 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV 180 RE VALGTNTDPYQRAEGRY LMPGII ALA S TP SILTKGTLLRRDLPL+ AAQQV Sbjct 116 REHVALGTNTDPYQRAEGRYRLMPGIIRALAESATPFSILTKGTLLRRDLPLLTLAAQQV 175 Query 181 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH 240 PVS+ VSLA+ DP+L + +E GTPTP+ARL LI AI AGL C+VMVAPV+P LTDS H Sbjct 176 PVSIGVSLAIHDPDLQKSIEPGTPTPKARLDLIRAITDAGLPCNVMVAPVIPFLTDSVRH 235 Query 241 LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSY 300 LD LL IA AGA+GVTVF +HLRGST+GWFM WL+ HP LV +YR+LY R Y+P Y Sbjct 236 LDGLLESIAEAGASGVTVFPMHLRGSTKGWFMNWLSTEHPALVRQYRQLYGRAAYVPSEY 295 Query 301 REMLRERVAPLIAKYRLAG--DHRPA 324 + L++RV PL+ +Y L G HR A Sbjct 296 KSWLKQRVDPLVDRYGLGGGAKHREA 321 >gi|325672584|ref|ZP_08152280.1| radical SAM family Fe-S protein [Rhodococcus equi ATCC 33707] gi|325556461|gb|EGD26127.1| radical SAM family Fe-S protein [Rhodococcus equi ATCC 33707] Length=341 Score = 455 bits (1171), Expect = 5e-126, Method: Compositional matrix adjust. Identities = 223/327 (69%), Positives = 260/327 (80%), Gaps = 7/327 (2%) Query 1 MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL 60 MRW Q + DDGALPGL+R GLVRSV+ P+F+GITFHEVLCKSALNKVP A+AL Sbjct 1 MRWQGQTI-----DTDDGALPGLERAGLVRSVQTPEFEGITFHEVLCKSALNKVPEASAL 55 Query 61 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR 120 PF++TVN +RGC+HACRYCFARPTHEYLD + G+DFD+QVVVK NVAAVLR EL R SW+ Sbjct 56 PFQFTVNTFRGCTHACRYCFARPTHEYLDLDAGSDFDSQVVVKMNVAAVLRKELARRSWK 115 Query 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV 180 RE VALGTNTDPYQRAEGRY LMP IIGAL S TP SILTKGTLLRRDLP++ +AA++V Sbjct 116 REHVALGTNTDPYQRAEGRYRLMPAIIGALTESDTPFSILTKGTLLRRDLPMLRQAAERV 175 Query 181 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH 240 V + VSLA+ DPEL + VE GTP+P+ARL LI ++ AGL C+VMVAPV+P LTDS H Sbjct 176 SVGIGVSLAIHDPELQKAVEPGTPSPRARLDLIRSVTDAGLPCNVMVAPVMPYLTDSTAH 235 Query 241 LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSY 300 LD LL IA AGATGVT+F +HLRGSTRGWF+ WLA HP LV RYR+LY RG Y+ P Y Sbjct 236 LDGLLCAIAEAGATGVTIFPMHLRGSTRGWFLNWLASEHPALVRRYRQLYGRGAYVAPEY 295 Query 301 REMLRERVAPLIAKYRLAG--DHRPAP 325 + LR RV P++ KY L G +HR AP Sbjct 296 KTWLRARVEPMVEKYGLGGRSEHRDAP 322 >gi|312139532|ref|YP_004006868.1| sam dependent methyltrasnferase [Rhodococcus equi 103S] gi|311888871|emb|CBH48184.1| SAM dependent methyltrasnferase [Rhodococcus equi 103S] Length=341 Score = 455 bits (1170), Expect = 6e-126, Method: Compositional matrix adjust. Identities = 223/327 (69%), Positives = 260/327 (80%), Gaps = 7/327 (2%) Query 1 MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL 60 MRW Q + DDGALPGL+R GLVRSV+ P+F+GITFHEVLCKSALNKVP A+AL Sbjct 1 MRWQGQTI-----DTDDGALPGLERAGLVRSVQTPEFEGITFHEVLCKSALNKVPEASAL 55 Query 61 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR 120 PF++TVN +RGC+HACRYCFARPTHEYLD + G+DFD+QVVVK NVAAVLR EL R SW+ Sbjct 56 PFQFTVNTFRGCTHACRYCFARPTHEYLDLDAGSDFDSQVVVKMNVAAVLRKELARRSWK 115 Query 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV 180 RE VALGTNTDPYQRAEGRY LMP IIGAL S TP SILTKGTLLRRDLP++ +AA++V Sbjct 116 REHVALGTNTDPYQRAEGRYRLMPAIIGALTESDTPFSILTKGTLLRRDLPMLRQAAERV 175 Query 181 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH 240 V + VSLA+ DPEL + VE GTP+P+ARL LI ++ AGL C+VMVAPV+P LTDS H Sbjct 176 SVGIGVSLAIHDPELQKAVEPGTPSPRARLDLIRSVTDAGLPCNVMVAPVIPYLTDSTAH 235 Query 241 LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSY 300 LD LL IA AGATGVT+F +HLRGSTRGWF+ WLA HP LV RYR+LY RG Y+ P Y Sbjct 236 LDGLLCAIAEAGATGVTIFPMHLRGSTRGWFLNWLASEHPALVRRYRQLYGRGAYVAPEY 295 Query 301 REMLRERVAPLIAKYRLAG--DHRPAP 325 + LR RV P++ KY L G +HR AP Sbjct 296 KTWLRARVEPMVEKYGLGGRSEHRDAP 322 >gi|226306447|ref|YP_002766407.1| hypothetical protein RER_29600 [Rhodococcus erythropolis PR4] gi|226185564|dbj|BAH33668.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length=345 Score = 447 bits (1149), Expect = 1e-123, Method: Compositional matrix adjust. Identities = 215/324 (67%), Positives = 252/324 (78%), Gaps = 7/324 (2%) Query 1 MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL 60 MRW+ QA + DDGALPGL+R GLVRSV+ P+F+GITFHEVLCKSALNK+P + L Sbjct 1 MRWSGQA-----LDADDGALPGLERAGLVRSVQTPEFEGITFHEVLCKSALNKMPEESTL 55 Query 61 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR 120 PF +TVN +RGCSHACRYCFARP+HEYLD + G DFD+QVVVKTN+AAVLR EL R SW+ Sbjct 56 PFSFTVNAFRGCSHACRYCFARPSHEYLDLDAGADFDSQVVVKTNIAAVLRKELARKSWK 115 Query 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV 180 RE+VALGTNTDPYQRAEGRY LMPGII AL SGTP SILTKGTLLRRDLPL+ AA QV Sbjct 116 RESVALGTNTDPYQRAEGRYRLMPGIIRALTESGTPFSILTKGTLLRRDLPLLKMAAAQV 175 Query 181 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH 240 V + VSLA+ D L + +E GTP+P+ARL +I AI AG C+VMVAPV+P LTDS H Sbjct 176 DVGIGVSLAINDAALQKQIEPGTPSPRARLEMIRAITDAGFSCNVMVAPVIPFLTDSTSH 235 Query 241 LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSY 300 LD L ++ AGAT VTVF +HLRGSTRGWFM WLA+ HP L+ RYRELY RG Y+ P Y Sbjct 236 LDGLFEALSEAGATSVTVFPMHLRGSTRGWFMNWLAQEHPALIRRYRELYGRGAYVTPEY 295 Query 301 REMLRERVAPLIAKYRLAG--DHR 322 + L RV PL+ ++ L G +HR Sbjct 296 KRWLASRVEPLVERHGLGGRSEHR 319 >gi|229493506|ref|ZP_04387291.1| radical SAM domain protein [Rhodococcus erythropolis SK121] gi|229319467|gb|EEN85303.1| radical SAM domain protein [Rhodococcus erythropolis SK121] Length=345 Score = 446 bits (1147), Expect = 2e-123, Method: Compositional matrix adjust. Identities = 215/324 (67%), Positives = 251/324 (78%), Gaps = 7/324 (2%) Query 1 MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL 60 MRW+ QA + DDGALPGL+R GLVRSV+ P+F+GITFHEVLCKSALNK+P + L Sbjct 1 MRWSGQA-----LDADDGALPGLERAGLVRSVQTPEFEGITFHEVLCKSALNKMPEESTL 55 Query 61 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR 120 PF +TVN +RGCSHACRYCFARP+HEYLD + G DFD+QVVVKTN+AAVLR EL R SW+ Sbjct 56 PFSFTVNAFRGCSHACRYCFARPSHEYLDLDAGADFDSQVVVKTNIAAVLRKELARKSWK 115 Query 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV 180 RE VALGTNTDPYQRAEGRY LMPGII AL SGTP SILTKGTLLRRDLPL+ AA QV Sbjct 116 REAVALGTNTDPYQRAEGRYRLMPGIIRALTESGTPFSILTKGTLLRRDLPLLKMAAAQV 175 Query 181 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH 240 V + VSLA+ D L + +E GTP+P+ARL +I AI AG C+VMVAPV+P LTDS H Sbjct 176 DVGIGVSLAINDAALQKQIEPGTPSPRARLEMIRAITDAGFSCNVMVAPVIPFLTDSTSH 235 Query 241 LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSY 300 LD L ++ AGAT VTVF +HLRGSTRGWFM WLA+ HP L+ RYRELY RG Y+ P Y Sbjct 236 LDGLFEALSEAGATSVTVFPMHLRGSTRGWFMNWLAQEHPALIRRYRELYGRGAYVTPEY 295 Query 301 REMLRERVAPLIAKYRLAG--DHR 322 + L RV PL+ ++ L G +HR Sbjct 296 KRWLASRVEPLVERHGLGGRSEHR 319 >gi|333919496|ref|YP_004493077.1| hypothetical protein AS9A_1828 [Amycolicicoccus subflavus DQS3-9A1] gi|333481717|gb|AEF40277.1| hypothetical protein AS9A_1828 [Amycolicicoccus subflavus DQS3-9A1] Length=334 Score = 431 bits (1109), Expect = 6e-119, Method: Compositional matrix adjust. Identities = 214/334 (65%), Positives = 255/334 (77%), Gaps = 6/334 (1%) Query 13 MPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAALPFRYTVNGYRGC 72 M VDDGALPGL R GLVRS+R+P+FDG+TFHEVLCKSALN+VP + +PFR+TVN RGC Sbjct 1 MAVDDGALPGLTRAGLVRSIRSPEFDGVTFHEVLCKSALNRVPAESGMPFRWTVNPTRGC 60 Query 73 SHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWRRETVALGTNTDP 132 +H C+YCFARPTHEYLD + G+DFD+++VVKTN+ VLR ELRR SWRRE VALGTNTDP Sbjct 61 THQCKYCFARPTHEYLDLSAGSDFDSEIVVKTNIVPVLRRELRRASWRRENVALGTNTDP 120 Query 133 YQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQVPVSVAVSLAVGD 192 YQRAEGRY LMPGII ALA SGTP S+LTKGTLLRRDLPL++ ++ V VS+ VSLA+ D Sbjct 121 YQRAEGRYKLMPGIISALAESGTPFSVLTKGTLLRRDLPLLSAVSRHVDVSLGVSLAMLD 180 Query 193 PELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEHLDQLLGQIAAAG 252 EL + VE GTPTP+ARL+LI AIR AG+ C VM+APV+P LTDS + LD LLG ++ AG Sbjct 181 EELQQSVEPGTPTPRARLSLIRAIREAGMPCGVMIAPVIPYLTDSAQQLDDLLGAVSEAG 240 Query 253 ATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSYREMLRERVAPLI 312 AT VTV +HLRGSTR FM WL HP L+ RYR +Y RG Y Y+E LR RVAPL+ Sbjct 241 ATKVTVLPMHLRGSTRDVFMNWLGEQHPALIRRYRAVYGRGAYASTDYQEWLRARVAPLV 300 Query 313 AKY-----RLAGDHRPAPPETEAALVPVQA-TLF 340 K+ R +GD P + A+ P A TLF Sbjct 301 RKHCLGAKRSSGDCEPRIGKDRRAVHPATALTLF 334 >gi|343928291|ref|ZP_08767744.1| hypothetical protein GOALK_112_00280 [Gordonia alkanivorans NBRC 16433] gi|343761821|dbj|GAA14670.1| hypothetical protein GOALK_112_00280 [Gordonia alkanivorans NBRC 16433] Length=343 Score = 422 bits (1086), Expect = 3e-116, Method: Compositional matrix adjust. Identities = 214/319 (68%), Positives = 251/319 (79%), Gaps = 5/319 (1%) Query 1 MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL 60 MRW+ QAV DDGALPGL R GLVRSVR P F+G+TFHEVL KSALN+VP A+ L Sbjct 1 MRWSEQAVEA-----DDGALPGLSRSGLVRSVRTPDFEGVTFHEVLAKSALNRVPEASHL 55 Query 61 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR 120 PF++TVN +RGC+HACRYCFARPTHEYLD + G DFD+QVVVK NVAAVLR EL+R SW Sbjct 56 PFQFTVNTFRGCTHACRYCFARPTHEYLDLDAGKDFDSQVVVKLNVAAVLRKELKRRSWT 115 Query 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV 180 RETVALGTNTDPYQRAEGRY LMPG+I ALA S TP SILTKGTL+RRDLPL+ +AA QV Sbjct 116 RETVALGTNTDPYQRAEGRYKLMPGVIAALAESRTPFSILTKGTLIRRDLPLLRQAAGQV 175 Query 181 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH 240 PV + +SLA+ DP+L R VE GTP+PQARL+LI + AGL HVMVAPV+P LTD+ H Sbjct 176 PVGIGISLAIIDPDLQRKVEPGTPSPQARLSLIRDLADAGLAPHVMVAPVIPYLTDARSH 235 Query 241 LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSY 300 LD+LLG +A AGA GVT F +HLR ST+ WF+ WLA HP L+ RYR LY RG Y+ P Y Sbjct 236 LDELLGALADAGAAGVTAFPMHLRSSTKPWFLEWLAEEHPALIRRYRGLYGRGAYVTPEY 295 Query 301 REMLRERVAPLIAKYRLAG 319 LRER+ P++ ++ LAG Sbjct 296 SSWLRERMQPMVQRHGLAG 314 >gi|262201690|ref|YP_003272898.1| radical SAM protein [Gordonia bronchialis DSM 43247] gi|262085037|gb|ACY21005.1| Radical SAM domain protein [Gordonia bronchialis DSM 43247] Length=342 Score = 417 bits (1073), Expect = 1e-114, Method: Compositional matrix adjust. Identities = 222/335 (67%), Positives = 254/335 (76%), Gaps = 7/335 (2%) Query 1 MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL 60 MRWA Q+V DDGA PG R GLVRSVR P+F+GITFHEVL KSALN+VP A+ L Sbjct 1 MRWADQSV-----DADDGAFPGFARSGLVRSVRTPEFEGITFHEVLAKSALNRVPEASHL 55 Query 61 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR 120 PFR+TVN +RGC+HACRYCFARPTHEYLD + G DFDTQVVVK NVAAVLR ELRR SW Sbjct 56 PFRFTVNTFRGCTHACRYCFARPTHEYLDLDAGRDFDTQVVVKLNVAAVLRRELRRRSWS 115 Query 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV 180 RE VALGTNTDPYQRAEGRY LMPG+IGALA S TP SILTKGTLLRRDLPL+ +AA QV Sbjct 116 REVVALGTNTDPYQRAEGRYRLMPGVIGALAESRTPFSILTKGTLLRRDLPLLRQAAGQV 175 Query 181 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH 240 VS+ +SLA D +L + +E GTP+PQARL+LI I AG HVMVAPV+P LTDS H Sbjct 176 AVSIGISLAFFDADLQKQIEPGTPSPQARLSLIRDIADAGFAPHVMVAPVIPYLTDSTAH 235 Query 241 LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSY 300 LD LLG +A AGA+GVT F +HLRG+T+ WFM WLA HP LV RYR LY RG Y+ Y Sbjct 236 LDDLLGALAEAGASGVTAFPMHLRGATKPWFMEWLAAEHPALVRRYRGLYGRGAYVTAEY 295 Query 301 REMLRERVAPLIAKYRLAGDHRPAPPE--TEAALV 333 LR+R+ PL+ ++ LAG PE TE A+V Sbjct 296 SAWLRDRMLPLVQQHGLAGSGGLRRPESGTEDAIV 330 >gi|54025629|ref|YP_119871.1| hypothetical protein nfa36590 [Nocardia farcinica IFM 10152] gi|54017137|dbj|BAD58507.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=346 Score = 411 bits (1056), Expect = 1e-112, Method: Compositional matrix adjust. Identities = 212/339 (63%), Positives = 249/339 (74%), Gaps = 5/339 (1%) Query 1 MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL 60 MRW Q + DDGALPGL R G VR+VR P+F+GITFHEVLCKSALN+VP +A+ Sbjct 1 MRWQNQT-----LDADDGALPGLSRAGFVRTVRTPEFEGITFHEVLCKSALNRVPEDSAV 55 Query 61 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR 120 PFR+TVN RGCSHACRYCFARPTHEYLD + G DFD Q+VVKTNVAAVLR EL R SW Sbjct 56 PFRWTVNPMRGCSHACRYCFARPTHEYLDLDAGRDFDAQIVVKTNVAAVLRRELGRRSWH 115 Query 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV 180 RE VALGTNTDPYQRAEGRY LMPGII AL +GTP SILTKGTLLRRDLPL++ AA++V Sbjct 116 REPVALGTNTDPYQRAEGRYRLMPGIIRALTDAGTPFSILTKGTLLRRDLPLLSLAAREV 175 Query 181 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH 240 V +AVS+A+ DP+LHR +E GTP P+ARL L+ A+ AG +VMVAP++P LTDS H Sbjct 176 DVRLAVSIAILDPDLHRQLEPGTPAPRARLDLVRALADAGFAVNVMVAPIIPYLTDSRAH 235 Query 241 LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSY 300 LD+L G IAA+GA +HLRGSTRGWF+ WLA AHP L+ RYR+LY RG Y+ P Y Sbjct 236 LDELFGAIAASGAASAVTIPMHLRGSTRGWFLGWLAEAHPALLRRYRQLYGRGAYVTPEY 295 Query 301 REMLRERVAPLIAKYRLAGDHRPAPPETEAALVPVQATL 339 LRER PL+ ++ L AP + P L Sbjct 296 ASWLRERTVPLLERHGLTRQSAAAPRPADEGSPPADGRL 334 >gi|317508692|ref|ZP_07966347.1| radical SAM superfamily protein [Segniliparus rugosus ATCC BAA-974] gi|316253013|gb|EFV12428.1| radical SAM superfamily protein [Segniliparus rugosus ATCC BAA-974] Length=356 Score = 404 bits (1039), Expect = 8e-111, Method: Compositional matrix adjust. Identities = 198/338 (59%), Positives = 250/338 (74%), Gaps = 7/338 (2%) Query 1 MRWARQAVAVN----GMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPN 56 MRW Q + + P + ALPGL+ +RSV P F G+TFHEVLC+SALN+VP Sbjct 1 MRWQGQLLRNDDGEGARPGETQALPGLEATTFLRSVTTPDFAGVTFHEVLCRSALNRVPK 60 Query 57 AAALPFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRR 116 ++++PF +T+N RGCSHACRYCFAR +HEYLD +PG DFD Q+VVKTN+ VLR ELRR Sbjct 61 SSSMPFGWTINPMRGCSHACRYCFARSSHEYLDLDPGDDFDRQIVVKTNLVEVLRRELRR 120 Query 117 PSWRRETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEA 176 PSW +E VA+GTNTDPYQRAEGRY LMPG+I ALA SGT SILTKGTLLRRDLP++ EA Sbjct 121 PSWAKEPVAMGTNTDPYQRAEGRYRLMPGVIEALAGSGTSFSILTKGTLLRRDLPVLKEA 180 Query 177 AQQVPVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTD 236 A++V V +AVS+A+ D L + +E GTPTP+ARL L+ A+R AG C VM AP+LP +TD Sbjct 181 AKRVRVHLAVSIALVDEPLQQSLEPGTPTPKARLDLVRAVREAGFSCGVMAAPILPGITD 240 Query 237 SGEHLDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYL 296 S + LDQL+ ++ AAGATGVT F LHLR STRGWFM WL + P+LV RY+ELY +G Y+ Sbjct 241 SRDQLDQLVKEVTAAGATGVTAFPLHLRPSTRGWFMSWLEQERPDLVPRYQELYAKGSYV 300 Query 297 PPSYREMLRERVAPLIAKYRLAGDHRPAPPETEAALVP 334 P+YR L + +AP++ ++R RPA P E +P Sbjct 301 TPAYRAWLSQTMAPILRRHR---GRRPASPRHEHRGLP 335 >gi|296393872|ref|YP_003658756.1| radical SAM domain-containing protein [Segniliparus rotundus DSM 44985] gi|296181019|gb|ADG97925.1| Radical SAM domain protein [Segniliparus rotundus DSM 44985] Length=365 Score = 403 bits (1035), Expect = 2e-110, Method: Compositional matrix adjust. Identities = 197/337 (59%), Positives = 245/337 (73%), Gaps = 10/337 (2%) Query 14 PVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAALPFRYTVNGYRGCS 73 P + ALPGL+ +RSV P F G+TFHEVLC+SALNKV + +PF +T+N RGCS Sbjct 29 PGEPQALPGLEATTFLRSVATPDFAGVTFHEVLCRSALNKVTKTSTMPFGWTINPMRGCS 88 Query 74 HACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWRRETVALGTNTDPY 133 HAC YCFAR +HEYLD +PG DFD Q++VKTN+ VLR ELRRPSW +E VA+GTNTDPY Sbjct 89 HACVYCFARTSHEYLDLDPGEDFDKQIIVKTNLVEVLRRELRRPSWAKEAVAMGTNTDPY 148 Query 134 QRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQVPVSVAVSLAVGDP 193 QRAEGRY LMPG+I AL+ASGT SILTKGTLLRRDLP++AEAA +V V ++VS+A+ D Sbjct 149 QRAEGRYRLMPGVIEALSASGTSFSILTKGTLLRRDLPVLAEAATRVRVHLSVSIALVDE 208 Query 194 ELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEHLDQLLGQIAAAGA 253 + + +E GTPTP+AR+ L+ AIR AG C VM AP+LP LTDS EHLDQL+ ++ AAGA Sbjct 209 PMQQSLEPGTPTPKARMELVRAIREAGFSCGVMAAPILPGLTDSREHLDQLVKELTAAGA 268 Query 254 TGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSYREMLRERVAPLI- 312 T ++ F LHLR TRGWFM WL R HPELV RY+ELY RG Y+ P+YRE L + +AP++ Sbjct 269 TSISAFPLHLRPGTRGWFMSWLEREHPELVPRYKELYPRGSYITPAYREWLSQTMAPILR 328 Query 313 ---------AKYRLAGDHRPAPPETEAALVPVQATLF 340 A++R G P + A+ P TLF Sbjct 329 RHQGRRPVSARHRHRGPEGPQRQQAAPAVTPEPQTLF 365 >gi|284033872|ref|YP_003383803.1| Radical SAM domain-containing protein [Kribbella flavida DSM 17836] gi|283813165|gb|ADB35004.1| Radical SAM domain protein [Kribbella flavida DSM 17836] Length=405 Score = 402 bits (1032), Expect = 6e-110, Method: Compositional matrix adjust. Identities = 207/327 (64%), Positives = 237/327 (73%), Gaps = 7/327 (2%) Query 1 MRWARQAVAVNGMPVDDGALPGLQRI-GLVRSVRAPQFDGITFHEVLCKSALNKVPNAAA 59 MRWA Q + GALPGL I GLVR+V P+F GITFHEVL +SALN VP + Sbjct 1 MRWAGQQLDAEA----PGALPGLGSIAGLVRTVTTPEFQGITFHEVLARSALNSVPGSG- 55 Query 60 LPFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSW 119 +PF +TVN YRGC+HACRYCFARPTH YL+ + G DFD Q+VVKTNVA VLR EL RPSW Sbjct 56 MPFNWTVNPYRGCTHACRYCFARPTHRYLELDQGLDFDQQIVVKTNVAEVLRRELARPSW 115 Query 120 RRETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQ 179 R E VALGTNTDPYQRAEGRY LMPGII ALA+SGTPLSILTKGTLLRRDL L+ AA+Q Sbjct 116 RGEQVALGTNTDPYQRAEGRYRLMPGIIEALASSGTPLSILTKGTLLRRDLELLQAAAEQ 175 Query 180 VPVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGE 239 VPV + VSLA+ D EL R VE G P+ + RL L+ A+R AGL C VMVAPVLP LTDS E Sbjct 176 VPVGIGVSLALADEELRRIVEPGVPSARGRLDLVRAVREAGLPCGVMVAPVLPWLTDSAE 235 Query 240 HLDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPS 299 LD L G++AAAGATGVT LHLR + WFM WLA+ P+LV RY LY GP PS Sbjct 236 QLDHLFGELAAAGATGVTTLVLHLRPGVKDWFMSWLAQERPDLVKRYEALYAHGPNAAPS 295 Query 300 YREMLRERVAPLIAKYRLAGD-HRPAP 325 +R +V PL+ K+ G HR +P Sbjct 296 FRNAFEAKVRPLLTKHGFGGSRHRGSP 322 >gi|332670528|ref|YP_004453536.1| Radical SAM domain-containing protein [Cellulomonas fimi ATCC 484] gi|332339566|gb|AEE46149.1| Radical SAM domain protein [Cellulomonas fimi ATCC 484] Length=355 Score = 399 bits (1025), Expect = 4e-109, Method: Compositional matrix adjust. Identities = 206/318 (65%), Positives = 236/318 (75%), Gaps = 4/318 (1%) Query 1 MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL 60 MRW Q+V G ALPGL LVRSVR P+F G+TFHEVLC+SALNKVP A+ + Sbjct 1 MRWDGQSVTTAG----GDALPGLALANLVRSVRTPEFAGVTFHEVLCRSALNKVPAASQM 56 Query 61 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR 120 PFR+TVN RGC HAC YCFARPTHEYLD G DF+TQ+VVKTNV VLR EL RPSWR Sbjct 57 PFRWTVNAVRGCLHACTYCFARPTHEYLDLGAGRDFETQLVVKTNVVDVLRAELARPSWR 116 Query 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV 180 RE VA+GTNTDPYQR EGRY MPGI+ AL TPLSILTKGTLLRRDLPL+AEAA++V Sbjct 117 REHVAMGTNTDPYQRVEGRYQFMPGIVDALVRHRTPLSILTKGTLLRRDLPLLAEAAREV 176 Query 181 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH 240 V + VSLAV DPEL ++E GTP P+ARL LI A+R AGL C VMVAPVLP LTD EH Sbjct 177 RVGIGVSLAVVDPELQAELEPGTPAPRARLELIRAVRDAGLPCGVMVAPVLPWLTDGREH 236 Query 241 LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSY 300 LD LL +A AGATGVTV LHLRGS + F+ WLAR P+LV RY++LY G Y P +Y Sbjct 237 LDALLRALADAGATGVTVLPLHLRGSVKPLFLGWLARYRPDLVPRYQDLYGTGAYAPAAY 296 Query 301 REMLRERVAPLIAKYRLA 318 L +RV PL+ ++ A Sbjct 297 GRWLHDRVTPLLQRHGFA 314 >gi|336320705|ref|YP_004600673.1| Radical SAM domain-containing protein [Cellvibrio gilvus ATCC 13127] gi|336104286|gb|AEI12105.1| Radical SAM domain protein [Cellvibrio gilvus ATCC 13127] Length=344 Score = 391 bits (1005), Expect = 7e-107, Method: Compositional matrix adjust. Identities = 211/349 (61%), Positives = 249/349 (72%), Gaps = 14/349 (4%) Query 1 MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL 60 MRW Q AV DDGALPGL GLVR+VR P+F G+TFHEV ++AL++VP A+ + Sbjct 1 MRWDGQKPAV-----DDGALPGLGLPGLVRTVRTPEFAGVTFHEVHARTALSQVPAASQV 55 Query 61 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR 120 PFR++VN RGC H C YCFAR TH YLD + G DFDTQ+VVKTNVA VLR EL RPSW Sbjct 56 PFRWSVNPMRGCLHRCVYCFARGTHRYLDLDAGEDFDTQIVVKTNVADVLRVELARPSWG 115 Query 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV 180 RE VALGTNTDPYQRAEGRYALMPG+IGALA SGTPLSILTKGTLLRRDLPL+ EAA++V Sbjct 116 REHVALGTNTDPYQRAEGRYALMPGVIGALAGSGTPLSILTKGTLLRRDLPLLVEAAREV 175 Query 181 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH 240 PVS+AVS+AV + +L + +E GTPT + RL L+ AIR AGL HVMVAPVLP LTDS EH Sbjct 176 PVSLAVSVAVLEEDLQQTLEPGTPTARVRLGLVRAIREAGLPVHVMVAPVLPWLTDSTEH 235 Query 241 LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSY 300 LD+LL IA AGA T+ LHLR R WF+ WL R P+L++ Y ++R G Y SY Sbjct 236 LDRLLAAIADAGAQRATILPLHLRPGAREWFLAWLERERPDLLAGYARVFRGGSYPHRSY 295 Query 301 REMLRERVAPLIAKYRL---------AGDHRPAPPETEAALVPVQATLF 340 RE L RV P++A++ L AG + A V VQ TLF Sbjct 296 REWLTARVRPILARHGLDRRTSEASAAGVRWQRAEHSHPATVEVQPTLF 344 >gi|148272084|ref|YP_001221645.1| hypothetical protein CMM_0905 [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830014|emb|CAN00942.1| conserved hypothetical protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length=394 Score = 379 bits (972), Expect = 5e-103, Method: Compositional matrix adjust. Identities = 198/347 (58%), Positives = 241/347 (70%), Gaps = 16/347 (4%) Query 1 MRWARQAVAVNGMPVDDGALPGLQRI-GLVRSVRAPQFDGITFHEVLCKSALNKVP-NAA 58 MRW+ Q ++ ALPGL R+ LV+SVR P+F G+TFHEVL KSALN+VP + Sbjct 1 MRWSAQRLS----EASADALPGLARLSNLVQSVRTPEFQGVTFHEVLAKSALNRVPGESK 56 Query 59 ALPFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPS 118 +P+ +T+N YRGC+HAC YCFARPTHEYLD + G DFD Q+VVK NVA VL EL +P+ Sbjct 57 VMPYGWTINPYRGCTHACVYCFARPTHEYLDLDGGRDFDDQIVVKVNVAEVLARELAKPT 116 Query 119 WRRETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQ 178 W + VALGTNTDPYQRAEGRYALMPGII ALA+SGTPLSILTKGTLLRRDLPL+AEA+ Sbjct 117 WTHDAVALGTNTDPYQRAEGRYALMPGIIAALASSGTPLSILTKGTLLRRDLPLLAEAST 176 Query 179 QVPVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSG 238 VPV +A+S+AV D EL + VE GTPT ARLA +TAIR AGLDC V + P+LP LTD Sbjct 177 SVPVDLAMSIAVLDDELQQSVEPGTPTTTARLATVTAIRDAGLDCTVFMMPILPMLTDGV 236 Query 239 EHLDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPP 298 EHLD L +I AG T V L+L+ + W++ WL R P+LV RY +LY RG Y P Sbjct 237 EHLDHALTRIREAGGTRVLYSALYLKPGVKEWYLQWLERERPDLVGRYLDLYARGGYAPQ 296 Query 299 SYREMLRERVAPLIAKYRLAGDH----------RPAPPETEAALVPV 335 +YR L+ R+ PL+ ++ L G R P EAA PV Sbjct 297 AYRSWLKARMDPLVRRHGLGGGRVDPRTGGVLSRADLPGVEAARAPV 343 >gi|258653505|ref|YP_003202661.1| radical SAM domain-containing protein [Nakamurella multipartita DSM 44233] gi|258556730|gb|ACV79672.1| Radical SAM domain protein [Nakamurella multipartita DSM 44233] Length=362 Score = 376 bits (966), Expect = 2e-102, Method: Compositional matrix adjust. Identities = 191/319 (60%), Positives = 228/319 (72%), Gaps = 5/319 (1%) Query 1 MRWARQAVAVNGMPVDDGALPGLQRI-GLVRSVRAPQFDGITFHEVLCKSALNKVPNAAA 59 MRW Q +A + D ALPG+ R+ GLVRSVR P+F G+TFHEV KSALN+VP + Sbjct 1 MRWQEQVLATD----DPSALPGMSRLAGLVRSVRTPEFAGVTFHEVHAKSALNRVPGGSP 56 Query 60 LPFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSW 119 +PF +TVN YRGC+H C YCFAR +H YLDF+ G DFD Q+VVKTNV +VLR E+ P W Sbjct 57 MPFAWTVNPYRGCTHGCVYCFARKSHTYLDFDSGADFDQQIVVKTNVGSVLRKEVGSPRW 116 Query 120 RRETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQ 179 RRE VA+GTNTDPYQRAEGRY LMP IIGALA SGTP SILTKGT+L RDLPL+A A + Sbjct 117 RREHVAMGTNTDPYQRAEGRYRLMPEIIGALADSGTPFSILTKGTVLSRDLPLLAAAGRS 176 Query 180 VPVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGE 239 VPV V VSLA+ DPEL +E GTP+P+ARL L+ IR AGL C V VAP+LP LTD + Sbjct 177 VPVGVGVSLALLDPELQATLEPGTPSPKARLDLVRRIRDAGLPCGVFVAPILPFLTDGPD 236 Query 240 HLDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPS 299 + L+ Q+A AGATGV+ GLHLR R WF WL R P+LV RY +LY G LP Sbjct 237 QIRALVRQLADAGATGVSGIGLHLRPGAREWFFGWLGRTRPDLVDRYHKLYAGGANLPAD 296 Query 300 YREMLRERVAPLIAKYRLA 318 YR+ L RV + A++ L Sbjct 297 YRKELAGRVRRISAEFALG 315 >gi|119962544|ref|YP_947385.1| radical SAM domain-containing protein [Arthrobacter aurescens TC1] gi|119949403|gb|ABM08314.1| putative radical SAM domain protein [Arthrobacter aurescens TC1] Length=376 Score = 374 bits (960), Expect = 1e-101, Method: Compositional matrix adjust. Identities = 193/343 (57%), Positives = 230/343 (68%), Gaps = 15/343 (4%) Query 1 MRWARQAVAVNGMPVDD-------GALPGLQRI----GLVRSVRAPQFDGITFHEVLCKS 49 MRW QA++ P + G P L + GLVRS+ P+F G+TFHEV KS Sbjct 13 MRWDAQALSPTRGPASETSDTQAPGPAPALDALLPLAGLVRSISTPEFSGVTFHEVTAKS 72 Query 50 ALNKVPNAAALPFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAV 109 LNKVP+ + +PF +TVN YRGCSHAC YCFAR +H YL+F+ G DFD+QVVVK N A V Sbjct 73 VLNKVPSGSNMPFEWTVNPYRGCSHACVYCFARKSHTYLEFDAGRDFDSQVVVKINAAEV 132 Query 110 LRHELRRPSWRRETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRD 169 LR EL +PSW R VALGTNTDPYQRAEGRYALMPGII ALA SGTP SILTKGTLL RD Sbjct 133 LRKELAKPSWARPQVALGTNTDPYQRAEGRYALMPGIIRALADSGTPFSILTKGTLLARD 192 Query 170 LPLIAEAAQQVPVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAP 229 +PL+ AA QVPV + +SLA+ + +L +E GTP+P+ARL LI +R AGL C VM P Sbjct 193 IPLLKHAATQVPVDLGISLAMTNEDLAALIEPGTPSPRARLKLIARLRDAGLGCGVMAMP 252 Query 230 VLPQLTDSGEHLDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYREL 289 +LP LTDS E LD L ++ AGATGVT L+L+ TR W+M WLA HPELV +YR L Sbjct 253 ILPWLTDSDEALDSLFAELTKAGATGVTAGALYLKPGTREWYMKWLAVQHPELVGKYRRL 312 Query 290 YRRGPYLPPSYREMLRERVAPLIAKYRLAG----DHRPAPPET 328 Y +G Y YR L R++ AKY G HR A P T Sbjct 313 YGQGSYASKEYRAWLTGRISYFKAKYGFTGTSGFSHRNARPST 355 >gi|296139660|ref|YP_003646903.1| radical SAM protein [Tsukamurella paurometabola DSM 20162] gi|296027794|gb|ADG78564.1| Radical SAM domain protein [Tsukamurella paurometabola DSM 20162] Length=344 Score = 372 bits (955), Expect = 5e-101, Method: Compositional matrix adjust. Identities = 202/348 (59%), Positives = 240/348 (69%), Gaps = 12/348 (3%) Query 1 MRWARQAVAVN-GMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAA 59 MRW Q + G V ALPGL+ IG R+V P F+GITFHEVLCKSALN+VP +AA Sbjct 1 MRWEGQLLTDEPGSGVR--ALPGLEGIG--RAVTTPDFEGITFHEVLCKSALNRVPESAA 56 Query 60 LPFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSW 119 LPF +T+N YRGC+HAC YCFAR +HEYLDF+ G DFDTQ+VVKTN+ +VL+ ELRR SW Sbjct 57 LPFEWTINPYRGCTHACTYCFARSSHEYLDFDAGGDFDTQIVVKTNLVSVLKKELRRASW 116 Query 120 RRETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQ 179 R E VALGTNTDPYQRAEGRY LMPG+IGALA +G+P+SILTKGTLL+RDLPL+A AA Sbjct 117 RGEAVALGTNTDPYQRAEGRYRLMPGVIGALAGAGSPISILTKGTLLQRDLPLLATAATT 176 Query 180 VPVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGE 239 VPV ++VSLA+ DP L +E GTP P ARL LI AI AG DC+VMVAPV+P LTD Sbjct 177 VPVRLSVSLALLDPALQASLEPGTPKPAARLGLIRAIADAGFDCNVMVAPVIPYLTDDSA 236 Query 240 HLDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPS 299 L L +A AGA TV L+L G R WF+ WLA+ HP LV RYR+LY + Sbjct 237 SLRALFEALAGAGAASATVMALNLTGRYRDWFLSWLAQNHPALVRRYRQLYGSTGRVSAE 296 Query 300 YREMLRERVAPLIAKYRL-------AGDHRPAPPETEAALVPVQATLF 340 YR LR R PL+ ++ L A D RP T + +Q LF Sbjct 297 YRAHLRSRTEPLMKEFGLSIREEYSAPDRRPVRRPTGSVAPDLQEPLF 344 >gi|325962870|ref|YP_004240776.1| DNA repair photolyase [Arthrobacter phenanthrenivorans Sphe3] gi|323468957|gb|ADX72642.1| DNA repair photolyase [Arthrobacter phenanthrenivorans Sphe3] Length=370 Score = 371 bits (952), Expect = 1e-100, Method: Compositional matrix adjust. Identities = 187/316 (60%), Positives = 219/316 (70%), Gaps = 1/316 (0%) Query 1 MRWARQAVAVNGMPVDDGALPGLQRI-GLVRSVRAPQFDGITFHEVLCKSALNKVPNAAA 59 MRW QA+ A+P L + GLVRSV P+F GITFHEV KS LNKVP + Sbjct 1 MRWEAQALVPAAGETGAAAVPALLPLAGLVRSVTTPEFAGITFHEVTAKSVLNKVPAGSR 60 Query 60 LPFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSW 119 +PF +T+N YRGCSHAC YCFAR +H YLDF+ G DFD+QVVVK N A VLR EL +PSW Sbjct 61 MPFEWTINPYRGCSHACVYCFARKSHMYLDFDAGLDFDSQVVVKVNAAEVLRKELAKPSW 120 Query 120 RRETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQ 179 R+ VALGTNTDPYQRAEGRY LMPGII ALA SGTPLSILTKGTLL RD+PL+ AA Q Sbjct 121 SRQQVALGTNTDPYQRAEGRYRLMPGIINALAESGTPLSILTKGTLLARDIPLLKSAAAQ 180 Query 180 VPVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGE 239 VPV + +SLA+ D EL VE GTP P+ARL L++ +R AGL C VM P+LP L+DS E Sbjct 181 VPVGLGISLAMTDEELSEAVEPGTPGPRARLKLVSRLREAGLPCGVMAMPILPWLSDSDE 240 Query 240 HLDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPS 299 LD L +AAAGATGV+ L+L+ TR WFM W+A HP L RYR LY G Y Sbjct 241 ALDSLFASLAAAGATGVSAGALYLKPGTREWFMKWIAEHHPALAGRYRRLYGSGSYASKE 300 Query 300 YREMLRERVAPLIAKY 315 YR L +V A++ Sbjct 301 YRSWLAGKVRYFKARH 316 >gi|296129654|ref|YP_003636904.1| Radical SAM domain protein [Cellulomonas flavigena DSM 20109] gi|296021469|gb|ADG74705.1| Radical SAM domain protein [Cellulomonas flavigena DSM 20109] Length=345 Score = 367 bits (943), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 200/323 (62%), Positives = 239/323 (74%), Gaps = 13/323 (4%) Query 1 MRWARQAVAVNGMPVDDG---ALPGLQRI---GLVRSVRAPQFDGITFHEVLCKSALNKV 54 MRW +G +D G ALPGL GLVRSVR P F G+TFHEVL ++ALN+V Sbjct 1 MRW-------DGQKIDAGEGSALPGLDLRTLPGLVRSVRTPDFAGVTFHEVLARTALNRV 53 Query 55 PNAAALPFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHEL 114 P+A+++PFR+TVN RGC H C YCF+R TH YLD + G DFDTQ+VVKTNV VLR E+ Sbjct 54 PDASSVPFRWTVNPMRGCLHRCTYCFSRGTHRYLDLDAGRDFDTQIVVKTNVVEVLRAEV 113 Query 115 RRPSWRRETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIA 174 R SW RE VALGTNTDPYQRAEGRY LMPGII ALA SGTPLS+LTKGTLLRRDLPL+A Sbjct 114 SRASWAREHVALGTNTDPYQRAEGRYELMPGIIDALAGSGTPLSVLTKGTLLRRDLPLLA 173 Query 175 EAAQQVPVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQL 234 AA+ VPVS+AVS+AV D EL + +E GTP ++RL L+ A+R AGL HV+VAPVLP L Sbjct 174 AAARDVPVSLAVSIAVLDDELQQSLEPGTPNARSRLGLVRAVRDAGLPVHVLVAPVLPWL 233 Query 235 TDSGEHLDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGP 294 TDS +HLD+LLG +AAAGA +V GLHLR R WF+ WLAR P+L++ YR +YR G Sbjct 234 TDSTDHLDRLLGAVAAAGADSASVMGLHLRPGAREWFLAWLARERPDLLAGYRRVYRGGS 293 Query 295 YLPPSYREMLRERVAPLIAKYRL 317 Y YR LR RV PL+A++ L Sbjct 294 YAHEGYRTWLRRRVTPLLARHGL 316 >gi|88855555|ref|ZP_01130219.1| hypothetical protein A20C1_01991 [marine actinobacterium PHSC20C1] gi|88815462|gb|EAR25320.1| hypothetical protein A20C1_01991 [marine actinobacterium PHSC20C1] Length=356 Score = 365 bits (937), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 182/301 (61%), Positives = 226/301 (76%), Gaps = 1/301 (0%) Query 18 GALPGLQRIG-LVRSVRAPQFDGITFHEVLCKSALNKVPNAAALPFRYTVNGYRGCSHAC 76 ALPGL R+ LVR+VR P+FDG+TF+EVL KSALNKVP + +PF +T+N RGC H C Sbjct 7 NALPGLARLNNLVRTVRTPEFDGVTFYEVLAKSALNKVPTTSDMPFGWTINPMRGCLHQC 66 Query 77 RYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWRRETVALGTNTDPYQRA 136 YCFARPTHEYLD + G DFDTQ++VK NVA VL EL +PSW R VALGTNTDPYQRA Sbjct 67 TYCFARPTHEYLDLDAGKDFDTQIIVKVNVAEVLAKELSQPSWGRHPVALGTNTDPYQRA 126 Query 137 EGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQVPVSVAVSLAVGDPELH 196 EGRY LMPGII ALA SGTPLSILTKGTLLRRDL L+AEA++ VPV + +S+A+ D EL Sbjct 127 EGRYRLMPGIIAALAGSGTPLSILTKGTLLRRDLALLAEASEHVPVDIGMSIAIYDDELQ 186 Query 197 RDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEHLDQLLGQIAAAGATGV 256 + VE GTPT +ARLA + A+R AGLDC V + P+LP LTD+ +HL+ + Q+ AAGAT + Sbjct 187 QSVEPGTPTAKARLATVAAVRNAGLDCAVFLMPILPFLTDTRDHLEHAVAQVKAAGATSI 246 Query 257 TVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSYREMLRERVAPLIAKYR 316 T LHL+ T+ W+ WLA AHPELV +Y+ +Y G Y P YR+ L ++ P+I ++ Sbjct 247 TYSALHLKPGTKEWYFQWLAGAHPELVDKYQSMYAHGTYAPKEYRQWLAAKLGPIIRRHG 306 Query 317 L 317 L Sbjct 307 L 307 >gi|220912256|ref|YP_002487565.1| radical SAM protein [Arthrobacter chlorophenolicus A6] gi|219859134|gb|ACL39476.1| Radical SAM domain protein [Arthrobacter chlorophenolicus A6] Length=368 Score = 362 bits (928), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 183/312 (59%), Positives = 212/312 (68%), Gaps = 4/312 (1%) Query 27 GLVRSVRAPQFDGITFHEVLCKSALNKVPNAAALPFRYTVNGYRGCSHACRYCFARPTHE 86 GLVRSV P+F GITFHEV KS LN+VP + +PF +TVN YRGCSHAC YCFAR +H Sbjct 27 GLVRSVTTPEFAGITFHEVTAKSVLNRVPAGSKMPFEWTVNPYRGCSHACVYCFARKSHT 86 Query 87 YLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWRRETVALGTNTDPYQRAEGRYALMPGI 146 YLDF+ G DFD+QVVVK N A VLR EL +PSW R VALGTNTDPYQRAEGRY LMPGI Sbjct 87 YLDFDAGLDFDSQVVVKVNAAEVLRKELAKPSWTRAQVALGTNTDPYQRAEGRYKLMPGI 146 Query 147 IGALAASGTPLSILTKGTLLRRDLPLIAEAAQQVPVSVAVSLAVGDPELHRDVESGTPTP 206 I ALA SGTPLSILTKGTLL RD+PL+ AA QVPV + +SLA+ D L +E GTP P Sbjct 147 IAALADSGTPLSILTKGTLLARDIPLLKSAAAQVPVGLGISLAMTDEALSEAIEPGTPGP 206 Query 207 QARLALITAIRAAGLDCHVMVAPVLPQLTDSGEHLDQLLGQIAAAGATGVTVFGLHLRGS 266 + RL L++ +R AGL C VM P+LP L+DS E LD L +AAAGATGV+ L+L+ Sbjct 207 RGRLKLVSRLREAGLPCGVMAMPILPWLSDSDEALDALFASLAAAGATGVSAGALYLKPG 266 Query 267 TRGWFMCWLARAHPELVSRYRELYRRGPYLPPSYREMLRERVAPLIAKYRLA----GDHR 322 TR WFM W+A HP L RYR LY G Y YR L +V A++ A HR Sbjct 267 TREWFMKWIAANHPGLAGRYRRLYGSGSYASKEYRTWLAAKVRYFKARHGFAFSSGFSHR 326 Query 323 PAPPETEAALVP 334 P E A P Sbjct 327 DLDPREEEAEYP 338 >gi|260905232|ref|ZP_05913554.1| DNA repair photolyase [Brevibacterium linens BL2] Length=376 Score = 355 bits (912), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 173/293 (60%), Positives = 206/293 (71%), Gaps = 0/293 (0%) Query 27 GLVRSVRAPQFDGITFHEVLCKSALNKVPNAAALPFRYTVNGYRGCSHACRYCFARPTHE 86 GLVRSVR P+F G+TFHEVL KSALNKVP A+++PF +T+N YRGCSHAC YCFAR TH Sbjct 45 GLVRSVRTPEFAGVTFHEVLAKSALNKVPAASSMPFTWTINPYRGCSHACVYCFARSTHR 104 Query 87 YLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWRRETVALGTNTDPYQRAEGRYALMPGI 146 YLDF+ G DFD QV+VK N VL E+ +P W RE VALGTNTDPYQRAEGRY+LMPGI Sbjct 105 YLDFDSGQDFDRQVIVKVNTPEVLAAEVAKPKWARELVALGTNTDPYQRAEGRYSLMPGI 164 Query 147 IGALAASGTPLSILTKGTLLRRDLPLIAEAAQQVPVSVAVSLAVGDPELHRDVESGTPTP 206 I ALA GTP+S+LTKGTLLRRDLPL+A A + V V +++S+AV D L + +E GTPT Sbjct 165 ITALAEHGTPMSVLTKGTLLRRDLPLLARAREDVDVEISMSIAVFDDTLQQTIEPGTPTT 224 Query 207 QARLALITAIRAAGLDCHVMVAPVLPQLTDSGEHLDQLLGQIAAAGATGVTVFGLHLRGS 266 ARLA + A G + V + PV+P+LTDS +HLD L I AGA+ V LHLR Sbjct 225 TARLATVRAAANLGFNVTVFLMPVMPKLTDSMDHLDAALSAIKEAGASRVVYGALHLRPG 284 Query 267 TRGWFMCWLARAHPELVSRYRELYRRGPYLPPSYREMLRERVAPLIAKYRLAG 319 R WF WL R HPEL+ RYR +Y + Y YR L R+ PLI Y L G Sbjct 285 AREWFFEWLEREHPELLPRYRRMYAKSSYASKEYRAWLSRRINPLIDAYDLRG 337 >gi|229820495|ref|YP_002882021.1| Radical SAM domain-containing protein [Beutenbergia cavernae DSM 12333] gi|229566408|gb|ACQ80259.1| Radical SAM domain protein [Beutenbergia cavernae DSM 12333] Length=368 Score = 355 bits (910), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 192/318 (61%), Positives = 227/318 (72%), Gaps = 3/318 (0%) Query 1 MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL 60 MRW Q + +G G LPGL GLVRSV P+F G+TFHEV KS LN+VP+ +A+ Sbjct 1 MRWDTQEL--DGA-AGAGELPGLGLRGLVRSVTTPEFAGVTFHEVAAKSLLNRVPSGSAM 57 Query 61 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR 120 P+ +T+N YRGC+HAC YCFARPTH YLD + G DFD Q+VVK N A VL ELRRP W Sbjct 58 PYGWTINPYRGCTHACTYCFARPTHTYLDLDAGEDFDRQIVVKVNAADVLHAELRRPGWN 117 Query 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV 180 RE VA+GTNTDPYQRAEGRY LMPGI+ LA SGTP SILTKGTLLRRDLPL+ A + V Sbjct 118 REHVAMGTNTDPYQRAEGRYRLMPGIVAELARSGTPFSILTKGTLLRRDLPLLTAARKDV 177 Query 181 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH 240 V + VSL + D L +E GTP+P ARL L+ A R AGLDC V VAPVLP LTDS +H Sbjct 178 AVGLGVSLTLLDAGLQASLEPGTPSPAARLGLVRAARDAGLDCGVFVAPVLPWLTDSADH 237 Query 241 LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSY 300 LD LL +A AGA+GVTV LHL+ TR WF+ WL + P+LV RY++LYR Y PP Y Sbjct 238 LDALLAALADAGASGVTVTSLHLKPHTREWFLGWLGQVRPDLVPRYQDLYRGRVYAPPEY 297 Query 301 REMLRERVAPLIAKYRLA 318 R L RVAPL+A++ A Sbjct 298 RRWLAARVAPLLARHGFA 315 >gi|239917943|ref|YP_002957501.1| DNA repair photolyase [Micrococcus luteus NCTC 2665] gi|239839150|gb|ACS30947.1| DNA repair photolyase [Micrococcus luteus NCTC 2665] Length=357 Score = 347 bits (891), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 180/326 (56%), Positives = 221/326 (68%), Gaps = 10/326 (3%) Query 1 MRWARQAV--------AVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALN 52 MRW Q + A G P AL L L RSV P+F G+TFHEVL K+ALN Sbjct 1 MRWEAQTLRSEGGAQRATAGTPAGSAALLPLS--DLQRSVTTPEFAGVTFHEVLAKTALN 58 Query 53 KVPNAAALPFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRH 112 VP+A+A+PFR+TVN YRGC+HACRYC+AR TH +L+ + G DFD Q+VVK NVA VLR Sbjct 59 SVPSASAMPFRWTVNPYRGCTHACRYCYARSTHTFLELDAGADFDRQIVVKVNVAEVLRA 118 Query 113 ELRRPSWRRETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPL 172 EL RP+W RE VALGTNTDPYQRAEGRYALMPGII ALA SGTP S+LTKGTLL RD+PL Sbjct 119 ELARPTWGREAVALGTNTDPYQRAEGRYALMPGIIRALADSGTPFSVLTKGTLLARDVPL 178 Query 173 IAEAAQQVPVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLP 232 + A++QVPV V++SLA+ DP + VE GTP+P ARL LI + AAG D VM P+LP Sbjct 179 LQAASRQVPVQVSLSLAMLDPAIAAAVEPGTPSPTARLRLIERLAAAGADVTVMAMPLLP 238 Query 233 QLTDSGEHLDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRR 292 LTD +D L+ +A AGA V LHLR + W++ W+ R HP+L++ Y ++Y R Sbjct 239 WLTDGDREIDALMRALADAGAARVMPGALHLRPGAKEWYLGWIRREHPDLLAGYEQMYAR 298 Query 293 GPYLPPSYREMLRERVAPLIAKYRLA 318 Y P SYR ML A++ LA Sbjct 299 SAYAPESYRRMLTRVAGEAAARHGLA 324 >gi|50954181|ref|YP_061469.1| hypothetical protein Lxx03480 [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950663|gb|AAT88364.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str. CTCB07] Length=347 Score = 345 bits (886), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 190/351 (55%), Positives = 225/351 (65%), Gaps = 15/351 (4%) Query 1 MRWARQAVAVNGMPVDDGALPGLQRI-GLVRSVRAPQFDGITFHEVLCKSALNKVPNAAA 59 MRW+ Q + AL GL R+ VRSVR P+F ITFHE+L KSALN+VP Sbjct 1 MRWSGQELTAE----TPAALSGLARLSAFVRSVRTPEFANITFHEILAKSALNRVPGGGG 56 Query 60 LPFR-YTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPS 118 +TVN YR CSHAC YCFARPTH YLD + G DFD +++VK NVA VLR EL RPS Sbjct 57 PMPFGWTVNPYRVCSHACVYCFARPTHSYLDLDQGKDFDQEIIVKVNVAEVLRKELARPS 116 Query 119 WRRETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQ 178 W R VALGTNTDPYQRAEGRYALMPGII ALA+SGTP SILTKG+LLRRDL +A+AA Sbjct 117 WGRHPVALGTNTDPYQRAEGRYALMPGIIDALASSGTPFSILTKGSLLRRDLDRLADAAT 176 Query 179 QVPVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSG 238 +VPV +A+S+AV D EL + VE GTPT +ARLA + A+R GLDC V + P+LP LTD+ Sbjct 177 RVPVDLALSIAVYDDELQQSVEPGTPTTKARLATVAAVRDRGLDCAVFLMPILPYLTDTR 236 Query 239 EHLDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPP 298 +LD+ L Q AGAT V LHL + W+ WL R H EL+ +YR +Y RG Y P Sbjct 237 GNLDRALRQARDAGATSVLYSALHLNPGVKEWYYLWLGREHTELLPQYRAMYGRGTYAPK 296 Query 299 SYREMLRERVAPLIAKYRLAGDHRPAPPETEAALVP---------VQATLF 340 YR L R+ PL G+ R A VP VQ TLF Sbjct 297 EYRRWLATRIKPLRTLRDSEGERRAFAGAAIAGEVPGVAGLMTLGVQPTLF 347 >gi|289704516|ref|ZP_06500951.1| radical SAM domain protein [Micrococcus luteus SK58] gi|289558774|gb|EFD52030.1| radical SAM domain protein [Micrococcus luteus SK58] Length=357 Score = 345 bits (886), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 179/326 (55%), Positives = 220/326 (68%), Gaps = 10/326 (3%) Query 1 MRWARQAV--------AVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALN 52 MRW Q + A G P AL L L RSV P+F G+TFHEVL K+ALN Sbjct 1 MRWEAQTLRSEGGAQRATAGTPAGSAAL--LPLSDLQRSVTTPEFAGVTFHEVLAKTALN 58 Query 53 KVPNAAALPFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRH 112 VP+A+A+PFR+TVN YRGC+HACRYC+AR TH +L+ + G DFD Q+VVK NVA VLR Sbjct 59 SVPSASAMPFRWTVNPYRGCTHACRYCYARSTHTFLELDAGADFDRQIVVKVNVAEVLRA 118 Query 113 ELRRPSWRRETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPL 172 EL RP+W RE VALGTNTDPYQRAEGRYALMPGII LA SGTP S+LTKGTLL RD+PL Sbjct 119 ELARPTWGREAVALGTNTDPYQRAEGRYALMPGIIRVLADSGTPFSVLTKGTLLARDVPL 178 Query 173 IAEAAQQVPVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLP 232 + A++QVPV V++SLA+ DP + VE GTP+P ARL LI + AAG D VM P+LP Sbjct 179 LQAASRQVPVQVSLSLAMLDPAIAAAVEPGTPSPTARLRLIERLAAAGADVTVMAMPLLP 238 Query 233 QLTDSGEHLDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRR 292 LTD +D L+ +A AGA V LHLR + W++ W+ R HP+L++ Y ++Y R Sbjct 239 WLTDGDREIDALMRALADAGAARVMPGALHLRPGAKEWYLDWIRREHPDLLAGYEQMYAR 298 Query 293 GPYLPPSYREMLRERVAPLIAKYRLA 318 Y P SYR ML A++ LA Sbjct 299 SAYAPESYRRMLTRVAGEAAARHGLA 324 >gi|257069986|ref|YP_003156241.1| DNA repair photolyase [Brachybacterium faecium DSM 4810] gi|256560804|gb|ACU86651.1| DNA repair photolyase [Brachybacterium faecium DSM 4810] Length=350 Score = 344 bits (882), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 187/327 (58%), Positives = 223/327 (69%), Gaps = 5/327 (1%) Query 1 MRWARQAVAVNGMPVDDGALPGLQRIGLVRSVRAPQFDGITFHEVLCKSALNKVPNAAAL 60 MRW+ Q V G + AL G+ GLVRSVR P+F G+TFHEV KSALN+VP A+++ Sbjct 1 MRWSGQTV---GAEQRERALLGMS--GLVRSVRTPEFAGVTFHEVTAKSALNRVPAASSM 55 Query 61 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR 120 PF +TVN YRGCSHAC YCFAR TH YLD + G DFD QVVVK NV VLR EL R SWR Sbjct 56 PFEWTVNPYRGCSHACVYCFARSTHRYLDLDAGADFDQQVVVKVNVDEVLRAELARRSWR 115 Query 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV 180 R+ VALGTNTDPYQRAEGRY LMPGII ALA SGTPLSILTKGTLLRRDLP + AA++V Sbjct 116 RDLVALGTNTDPYQRAEGRYRLMPGIISALADSGTPLSILTKGTLLRRDLPQLVTAAERV 175 Query 181 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLTDSGEH 240 PV +++S+AV D L + VE GTP+ ARLA + A AG V + P++P LTDS Sbjct 176 PVDLSMSIAVFDDALQKAVEPGTPSTAARLATVRAAADAGFRVTVFLMPIMPWLTDSDAQ 235 Query 241 LDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELYRRGPYLPPSY 300 LD+ L +IA AGA V LHLR + WF+ W+AR HPEL + YR Y Y P Y Sbjct 236 LDEALARIAEAGADRVVHGALHLRPGAKEWFLEWIAREHPELATGYRRFYGSSSYAPAGY 295 Query 301 REMLRERVAPLIAKYRLAGDHRPAPPE 327 R L +R+ PL+ ++ LA PE Sbjct 296 RRNLAQRLRPLLRRHGLASHEDEDQPE 322 Lambda K H 0.323 0.137 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 617544973600 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40