BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2587c Length=573 Score E Sequences producing significant alignments: (Bits) Value gi|15609724|ref|NP_217103.1| preprotein translocase subunit SecD... 1140 0.0 gi|31793771|ref|NP_856264.1| preprotein translocase subunit SecD... 1137 0.0 gi|289570758|ref|ZP_06450985.1| preprotein translocase subunit s... 1130 0.0 gi|308232183|ref|ZP_07415198.2| preprotein translocase subunit s... 1129 0.0 gi|13882410|gb|AAK46977.1| protein-export membrane protein SecD ... 1105 0.0 gi|183982134|ref|YP_001850425.1| protein-export membrane protein... 879 0.0 gi|118617349|ref|YP_905681.1| preprotein translocase subunit Sec... 877 0.0 gi|307085273|ref|ZP_07494386.1| protein-export membrane protein ... 853 0.0 gi|221229642|ref|YP_002503058.1| preprotein translocase subunit ... 845 0.0 gi|161723271|ref|NP_301427.2| preprotein translocase subunit Sec... 842 0.0 gi|118471632|ref|YP_887280.1| preprotein translocase subunit Sec... 732 0.0 gi|169629964|ref|YP_001703613.1| preprotein translocase subunit ... 727 0.0 gi|466811|gb|AAA17086.1| secD [Mycobacterium leprae] 691 0.0 gi|289762758|ref|ZP_06522136.1| export membrane protein secD [My... 689 0.0 gi|240171977|ref|ZP_04750636.1| preprotein translocase subunit S... 664 0.0 gi|226306414|ref|YP_002766374.1| protein-export membrane protein... 638 0.0 gi|229491968|ref|ZP_04385785.1| protein-export membrane protein ... 637 1e-180 gi|296170832|ref|ZP_06852397.1| protein-export membrane protein ... 621 9e-176 gi|118463542|ref|YP_882650.1| preprotein translocase subunit Sec... 608 6e-172 gi|41407141|ref|NP_959977.1| preprotein translocase subunit SecD... 608 1e-171 gi|254775915|ref|ZP_05217431.1| preprotein translocase subunit S... 606 3e-171 gi|111023848|ref|YP_706820.1| preprotein translocase subunit Sec... 599 5e-169 gi|254821448|ref|ZP_05226449.1| preprotein translocase subunit S... 597 1e-168 gi|333991014|ref|YP_004523628.1| protein-export membrane protein... 586 5e-165 gi|342858588|ref|ZP_08715243.1| preprotein translocase subunit S... 579 5e-163 gi|54025661|ref|YP_119903.1| preprotein translocase subunit SecD... 573 2e-161 gi|257055540|ref|YP_003133372.1| protein-export membrane protein... 573 3e-161 gi|226366284|ref|YP_002784067.1| preprotein translocase subunit ... 572 5e-161 gi|262202234|ref|YP_003273442.1| protein-export membrane protein... 568 1e-159 gi|312139497|ref|YP_004006833.1| preprotein translocase subunit ... 564 2e-158 gi|343924324|ref|ZP_08763875.1| protein-export membrane protein ... 563 3e-158 gi|325672613|ref|ZP_08152309.1| protein-export membrane protein ... 561 1e-157 gi|120403568|ref|YP_953397.1| preprotein translocase subunit Sec... 546 5e-153 gi|108799243|ref|YP_639440.1| preprotein translocase subunit Sec... 539 5e-151 gi|296139651|ref|YP_003646894.1| protein-export membrane protein... 526 3e-147 gi|296393863|ref|YP_003658747.1| protein-export membrane protein... 525 1e-146 gi|315444730|ref|YP_004077609.1| protein-export membrane protein... 524 2e-146 gi|145224398|ref|YP_001135076.1| preprotein translocase subunit ... 524 2e-146 gi|336461528|gb|EGO40396.1| protein-export membrane protein, Sec... 521 1e-145 gi|326382130|ref|ZP_08203822.1| preprotein translocase subunit S... 517 2e-144 gi|256375830|ref|YP_003099490.1| protein-export membrane protein... 512 7e-143 gi|317508683|ref|ZP_07966338.1| protein-export membrane protein ... 511 2e-142 gi|302527848|ref|ZP_07280190.1| protein-export membrane protein ... 508 9e-142 gi|333919486|ref|YP_004493067.1| protein-export membrane protein... 503 3e-140 gi|340528669|gb|AEK43874.1| preprotein translocase SecD subunit ... 500 3e-139 gi|134098599|ref|YP_001104260.1| preprotein translocase subunit ... 498 1e-138 gi|300787170|ref|YP_003767461.1| preprotein translocase SecD sub... 485 1e-134 gi|237785618|ref|YP_002906323.1| preprotein translocase subunit ... 454 2e-125 gi|311739554|ref|ZP_07713389.1| protein-export membrane protein ... 439 5e-121 gi|300781062|ref|ZP_07090916.1| protein-export membrane protein ... 438 1e-120 >gi|15609724|ref|NP_217103.1| preprotein translocase subunit SecD [Mycobacterium tuberculosis H37Rv] gi|121638472|ref|YP_978696.1| preprotein translocase subunit SecD [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662426|ref|YP_001283949.1| preprotein translocase subunit SecD [Mycobacterium tuberculosis H37Ra] 46 more sequence titles Length=573 Score = 1140 bits (2949), Expect = 0.0, Method: Compositional matrix adjust. Identities = 572/573 (99%), Positives = 573/573 (100%), Gaps = 0/573 (0%) Query 1 VASSSAPVHPARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGS 60 +ASSSAPVHPARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGS Sbjct 1 MASSSAPVHPARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGS 60 Query 61 APSREALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRP 120 APSREALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRP Sbjct 61 APSREALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRP 120 Query 121 VLNSMPAQPAAEEPQPAPSAEPQPPGQPAAPPPAQSGAPASPQPGAQPRPYPQDPAPSPN 180 VLNSMPAQPAAEEPQPAPSAEPQPPGQPAAPPPAQSGAPASPQPGAQPRPYPQDPAPSPN Sbjct 121 VLNSMPAQPAAEEPQPAPSAEPQPPGQPAAPPPAQSGAPASPQPGAQPRPYPQDPAPSPN 180 Query 181 PTSPASPPPAPPAEAPATDPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDIL 240 PTSPASPPPAPPAEAPATDPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDIL Sbjct 181 PTSPASPPPAPPAEAPATDPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDIL 240 Query 241 AGNDDPKLPLVTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANI 300 AGNDDPKLPLVTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANI Sbjct 241 AGNDDPKLPLVTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANI 300 Query 301 WADYTAAHIGTQTAFTLDSQVVSAPQIQEAIPGGRTQISGGDPPFTAATARQLANVLKYG 360 WADYTAAHIGTQTAFTLDSQVVSAPQIQEAIPGGRTQISGGDPPFTAATARQLANVLKYG Sbjct 301 WADYTAAHIGTQTAFTLDSQVVSAPQIQEAIPGGRTQISGGDPPFTAATARQLANVLKYG 360 Query 361 SLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASG 420 SLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASG Sbjct 361 SLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASG 420 Query 421 SMVFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPR 480 SMVFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPR Sbjct 421 SMVFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPR 480 Query 481 GWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLA 540 GWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLA Sbjct 481 GWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLA 540 Query 541 SKSSLLAKPAYNGLGAVQQVARERRAMARTGRG 573 SKSSLLAKPAYNGLGAVQQVARERRAMARTGRG Sbjct 541 SKSSLLAKPAYNGLGAVQQVARERRAMARTGRG 573 >gi|31793771|ref|NP_856264.1| preprotein translocase subunit SecD [Mycobacterium bovis AF2122/97] gi|31619365|emb|CAD94803.1| PROTEIN-EXPORT MEMBRANE PROTEIN SECD [Mycobacterium bovis AF2122/97] Length=573 Score = 1137 bits (2942), Expect = 0.0, Method: Compositional matrix adjust. Identities = 571/573 (99%), Positives = 573/573 (100%), Gaps = 0/573 (0%) Query 1 VASSSAPVHPARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGS 60 +ASSSAPVHPARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGS Sbjct 1 MASSSAPVHPARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGS 60 Query 61 APSREALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRP 120 APSREALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRP Sbjct 61 APSREALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRP 120 Query 121 VLNSMPAQPAAEEPQPAPSAEPQPPGQPAAPPPAQSGAPASPQPGAQPRPYPQDPAPSPN 180 VLNSMPAQPAAEEPQPAPSAEPQPPGQPAAPPPAQSGAPASPQPGAQPRPYPQDPAPSPN Sbjct 121 VLNSMPAQPAAEEPQPAPSAEPQPPGQPAAPPPAQSGAPASPQPGAQPRPYPQDPAPSPN 180 Query 181 PTSPASPPPAPPAEAPATDPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDIL 240 PTSPASPPPAPPAEAPATDPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDIL Sbjct 181 PTSPASPPPAPPAEAPATDPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDIL 240 Query 241 AGNDDPKLPLVTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANI 300 AGNDDPKLPLVTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANI Sbjct 241 AGNDDPKLPLVTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANI 300 Query 301 WADYTAAHIGTQTAFTLDSQVVSAPQIQEAIPGGRTQISGGDPPFTAATARQLANVLKYG 360 WADYTAAHIGTQTAFTLDSQVVSAPQIQEAIPGGRTQISGGDPPFTAATARQLANVLKYG Sbjct 301 WADYTAAHIGTQTAFTLDSQVVSAPQIQEAIPGGRTQISGGDPPFTAATARQLANVLKYG 360 Query 361 SLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASG 420 SLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASG Sbjct 361 SLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASG 420 Query 421 SMVFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPR 480 SMVFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPR Sbjct 421 SMVFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPR 480 Query 481 GWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLA 540 GWARARKTIVSG+AVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLA Sbjct 481 GWARARKTIVSGSAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLA 540 Query 541 SKSSLLAKPAYNGLGAVQQVARERRAMARTGRG 573 SKSSLLAKPAYNGLGAVQQVARERRAMARTGRG Sbjct 541 SKSSLLAKPAYNGLGAVQQVARERRAMARTGRG 573 >gi|289570758|ref|ZP_06450985.1| preprotein translocase subunit secD [Mycobacterium tuberculosis T17] gi|289544512|gb|EFD48160.1| preprotein translocase subunit secD [Mycobacterium tuberculosis T17] Length=573 Score = 1130 bits (2924), Expect = 0.0, Method: Compositional matrix adjust. Identities = 569/573 (99%), Positives = 570/573 (99%), Gaps = 0/573 (0%) Query 1 VASSSAPVHPARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGS 60 +ASSSAPVHPARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGS Sbjct 1 MASSSAPVHPARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGS 60 Query 61 APSREALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRP 120 APSREALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRP Sbjct 61 APSREALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRP 120 Query 121 VLNSMPAQPAAEEPQPAPSAEPQPPGQPAAPPPAQSGAPASPQPGAQPRPYPQDPAPSPN 180 VLNSMPAQ AAEEPQPA SAEPQ PGQPAAPPPAQSGAPASPQPGAQPRPYPQDPAPSPN Sbjct 121 VLNSMPAQLAAEEPQPALSAEPQLPGQPAAPPPAQSGAPASPQPGAQPRPYPQDPAPSPN 180 Query 181 PTSPASPPPAPPAEAPATDPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDIL 240 PTSPASPPPAPPAEAPATDPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDIL Sbjct 181 PTSPASPPPAPPAEAPATDPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDIL 240 Query 241 AGNDDPKLPLVTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANI 300 AGNDDPKLPLVTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANI Sbjct 241 AGNDDPKLPLVTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANI 300 Query 301 WADYTAAHIGTQTAFTLDSQVVSAPQIQEAIPGGRTQISGGDPPFTAATARQLANVLKYG 360 WADYTAAHIGTQTAFTLDSQVVSAPQIQEAIPGGRTQISGGDPPFTAATARQLANVLKYG Sbjct 301 WADYTAAHIGTQTAFTLDSQVVSAPQIQEAIPGGRTQISGGDPPFTAATARQLANVLKYG 360 Query 361 SLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASG 420 SLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASG Sbjct 361 SLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASG 420 Query 421 SMVFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPR 480 SMVFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPR Sbjct 421 SMVFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPR 480 Query 481 GWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLA 540 GWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLA Sbjct 481 GWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLA 540 Query 541 SKSSLLAKPAYNGLGAVQQVARERRAMARTGRG 573 SKSSLLAKPAYNGLGAVQQVARERRAMARTGRG Sbjct 541 SKSSLLAKPAYNGLGAVQQVARERRAMARTGRG 573 >gi|308232183|ref|ZP_07415198.2| preprotein translocase subunit secD [Mycobacterium tuberculosis SUMu001] gi|308369763|ref|ZP_07418962.2| preprotein translocase subunit secD [Mycobacterium tuberculosis SUMu002] gi|308371065|ref|ZP_07423710.2| preprotein translocase subunit secD [Mycobacterium tuberculosis SUMu003] 19 more sequence titles Length=566 Score = 1129 bits (2921), Expect = 0.0, Method: Compositional matrix adjust. Identities = 565/566 (99%), Positives = 566/566 (100%), Gaps = 0/566 (0%) Query 8 VHPARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGSAPSREAL 67 +HPARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGSAPSREAL Sbjct 1 MHPARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGSAPSREAL 60 Query 68 AQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRPVLNSMPA 127 AQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRPVLNSMPA Sbjct 61 AQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRPVLNSMPA 120 Query 128 QPAAEEPQPAPSAEPQPPGQPAAPPPAQSGAPASPQPGAQPRPYPQDPAPSPNPTSPASP 187 QPAAEEPQPAPSAEPQPPGQPAAPPPAQSGAPASPQPGAQPRPYPQDPAPSPNPTSPASP Sbjct 121 QPAAEEPQPAPSAEPQPPGQPAAPPPAQSGAPASPQPGAQPRPYPQDPAPSPNPTSPASP 180 Query 188 PPAPPAEAPATDPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDILAGNDDPK 247 PPAPPAEAPATDPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDILAGNDDPK Sbjct 181 PPAPPAEAPATDPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDILAGNDDPK 240 Query 248 LPLVTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANIWADYTAA 307 LPLVTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANIWADYTAA Sbjct 241 LPLVTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANIWADYTAA 300 Query 308 HIGTQTAFTLDSQVVSAPQIQEAIPGGRTQISGGDPPFTAATARQLANVLKYGSLPLSFE 367 HIGTQTAFTLDSQVVSAPQIQEAIPGGRTQISGGDPPFTAATARQLANVLKYGSLPLSFE Sbjct 301 HIGTQTAFTLDSQVVSAPQIQEAIPGGRTQISGGDPPFTAATARQLANVLKYGSLPLSFE 360 Query 368 PSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGSMVFAIL 427 PSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGSMVFAIL Sbjct 361 PSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGSMVFAIL 420 Query 428 VLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARK 487 VLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARK Sbjct 421 VLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARK 480 Query 488 TIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSSLLA 547 TIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSSLLA Sbjct 481 TIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSSLLA 540 Query 548 KPAYNGLGAVQQVARERRAMARTGRG 573 KPAYNGLGAVQQVARERRAMARTGRG Sbjct 541 KPAYNGLGAVQQVARERRAMARTGRG 566 >gi|13882410|gb|AAK46977.1| protein-export membrane protein SecD [Mycobacterium tuberculosis CDC1551] Length=554 Score = 1105 bits (2857), Expect = 0.0, Method: Compositional matrix adjust. Identities = 554/554 (100%), Positives = 554/554 (100%), Gaps = 0/554 (0%) Query 20 MLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGSAPSREALAQAQQIISARVN 79 MLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGSAPSREALAQAQQIISARVN Sbjct 1 MLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGSAPSREALAQAQQIISARVN 60 Query 80 GLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRPVLNSMPAQPAAEEPQPAPS 139 GLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRPVLNSMPAQPAAEEPQPAPS Sbjct 61 GLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRPVLNSMPAQPAAEEPQPAPS 120 Query 140 AEPQPPGQPAAPPPAQSGAPASPQPGAQPRPYPQDPAPSPNPTSPASPPPAPPAEAPATD 199 AEPQPPGQPAAPPPAQSGAPASPQPGAQPRPYPQDPAPSPNPTSPASPPPAPPAEAPATD Sbjct 121 AEPQPPGQPAAPPPAQSGAPASPQPGAQPRPYPQDPAPSPNPTSPASPPPAPPAEAPATD 180 Query 200 PRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDILAGNDDPKLPLVTCSTDHKT 259 PRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDILAGNDDPKLPLVTCSTDHKT Sbjct 181 PRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDILAGNDDPKLPLVTCSTDHKT 240 Query 260 AYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANIWADYTAAHIGTQTAFTLDS 319 AYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANIWADYTAAHIGTQTAFTLDS Sbjct 241 AYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANIWADYTAAHIGTQTAFTLDS 300 Query 320 QVVSAPQIQEAIPGGRTQISGGDPPFTAATARQLANVLKYGSLPLSFEPSEAQTVSATLG 379 QVVSAPQIQEAIPGGRTQISGGDPPFTAATARQLANVLKYGSLPLSFEPSEAQTVSATLG Sbjct 301 QVVSAPQIQEAIPGGRTQISGGDPPFTAATARQLANVLKYGSLPLSFEPSEAQTVSATLG 360 Query 380 LSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGSMVFAILVLLGRYINYTLD 439 LSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGSMVFAILVLLGRYINYTLD Sbjct 361 LSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGSMVFAILVLLGRYINYTLD 420 Query 440 LAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTIVSGNAVTFLA 499 LAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTIVSGNAVTFLA Sbjct 421 LAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTIVSGNAVTFLA 480 Query 500 AAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSSLLAKPAYNGLGAVQQ 559 AAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSSLLAKPAYNGLGAVQQ Sbjct 481 AAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSSLLAKPAYNGLGAVQQ 540 Query 560 VARERRAMARTGRG 573 VARERRAMARTGRG Sbjct 541 VARERRAMARTGRG 554 >gi|183982134|ref|YP_001850425.1| protein-export membrane protein SecD [Mycobacterium marinum M] gi|183175460|gb|ACC40570.1| protein-export membrane protein SecD [Mycobacterium marinum M] Length=615 Score = 879 bits (2272), Expect = 0.0, Method: Compositional matrix adjust. Identities = 507/619 (82%), Positives = 532/619 (86%), Gaps = 50/619 (8%) Query 1 VASSSAPVHPARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGS 60 +ASSSAPVHPARYLSVFLV+LIG+YLLVF TGDK APKLGIDLQGGTRVTLTARTPDGS Sbjct 1 MASSSAPVHPARYLSVFLVLLIGVYLLVFLTGDKKAAPKLGIDLQGGTRVTLTARTPDGS 60 Query 61 APSREALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRP 120 APSREALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDG+EARNLGQTARLYIRP Sbjct 61 APSREALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGNEARNLGQTARLYIRP 120 Query 121 VLNSMPAQPAAEEPQ---------------PAPSAEPQPP--GQPAAPPPAQSGAPASPQ 163 V+NSMPAQPAA+EPQ PAP+A QPP G PA+P QSGAPA+PQ Sbjct 121 VMNSMPAQPAAQEPQQEPQQPGGTAPAPGGPAPNAG-QPPESGAPASP---QSGAPAAPQ 176 Query 164 PGAQPRPYPQDP--------------------APSPNPTSPASPPPAPPAEAPAT-DPRK 202 G RP Q +P+P T P PP E PA DPRK Sbjct 177 SGTPGRPGAQPRPYPQDPPPSPAPAPSPAPTGSPAPPATGAQQPADLPPGEEPALPDPRK 236 Query 203 DLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDILAGNDDPKLPLVTCSTDHKTAYL 262 DLAERIAQEKK RQSTNQY+QMVALQF+AT+C DDILAGNDDPKLPLVTCSTDHKTAYL Sbjct 237 DLAERIAQEKKWRQSTNQYIQMVALQFEATQCGKDDILAGNDDPKLPLVTCSTDHKTAYL 296 Query 263 LAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANIWADYTAAHIGTQTAFTLDSQVV 322 LAPSIISGDQIQNATSGMDQR IGYVVDLQFK AAN WADYTAAHIGTQTAFTLDSQVV Sbjct 297 LAPSIISGDQIQNATSGMDQRSIGYVVDLQFKSQAANTWADYTAAHIGTQTAFTLDSQVV 356 Query 323 SAPQIQEAIPGGRTQISGGDPPFTAATARQLANVLKYGSLPLSFEPSEAQTVSATLGLSS 382 SAPQI EAIPGGRTQISGG+PPF+A+TARQLANVLKYGSLPLSFE SEAQTVSATLGL+S Sbjct 357 SAPQILEAIPGGRTQISGGEPPFSASTARQLANVLKYGSLPLSFESSEAQTVSATLGLTS 416 Query 383 LRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGSMVFAILVLLGRYINYTLDLAG 442 LRAG+IAGAIGL LVL+YSLLYYRVLGLLTALSL+ASG+MVFAILVLLGRYINYTLDLAG Sbjct 417 LRAGLIAGAIGLALVLLYSLLYYRVLGLLTALSLIASGAMVFAILVLLGRYINYTLDLAG 476 Query 443 IAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTIVSGNAVTFLAAAV 502 IAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTIVSGNAVTFLAAAV Sbjct 477 IAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTIVSGNAVTFLAAAV 536 Query 503 LYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSSLLAKPAYNGLGAVQQVAR 562 LYFLAIGQVKGFAFTLGLTTILD+VVVFLVTWPLVYLASKS LAKPAYNGLGAVQQVAR Sbjct 537 LYFLAIGQVKGFAFTLGLTTILDIVVVFLVTWPLVYLASKSPRLAKPAYNGLGAVQQVAR 596 Query 563 ERRA--------MARTGRG 573 ERRA +A+TGRG Sbjct 597 ERRASDSRTRSGIAKTGRG 615 >gi|118617349|ref|YP_905681.1| preprotein translocase subunit SecD [Mycobacterium ulcerans Agy99] gi|118569459|gb|ABL04210.1| protein-export membrane protein SecD [Mycobacterium ulcerans Agy99] Length=615 Score = 877 bits (2266), Expect = 0.0, Method: Compositional matrix adjust. Identities = 503/614 (82%), Positives = 527/614 (86%), Gaps = 42/614 (6%) Query 1 VASSSAPVHPARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGS 60 +ASSSAPVHPARYLSVFLV+LIG+YLLVF TGDK APKLGIDLQGGTRVTLTARTPDGS Sbjct 1 MASSSAPVHPARYLSVFLVLLIGVYLLVFLTGDKKAAPKLGIDLQGGTRVTLTARTPDGS 60 Query 61 APSREALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRP 120 APSREALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDG+EARNLGQTARLYIRP Sbjct 61 APSREALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGNEARNLGQTARLYIRP 120 Query 121 VLNSMPAQPAAEEPQ----------PAPSAEPQPPGQP---AAPPPAQSGAPASPQPGAQ 167 V+NSMPAQPAA+EPQ PAP GQP +AP QSGAPA+PQ G Sbjct 121 VMNSMPAQPAAQEPQQEPQQPGGTAPAPGGPAPNAGQPPESSAPASPQSGAPAAPQSGTP 180 Query 168 PRPYPQDP--------------------APSPNPTSPASPPPAPPAEAPAT-DPRKDLAE 206 RP Q +P+P T P PP E PA DPRKDLAE Sbjct 181 GRPGAQPRPYPQDPPPSPAPAPSPAPTGSPAPPATGAQQPADLPPGEEPALPDPRKDLAE 240 Query 207 RIAQEKKLRQSTNQYMQMVALQFQATRCESDDILAGNDDPKLPLVTCSTDHKTAYLLAPS 266 RIAQEKK RQSTNQY+QMVALQF+AT+C DDILAGNDDPKLPLVTCSTDHKTAYLLAPS Sbjct 241 RIAQEKKWRQSTNQYIQMVALQFEATQCGKDDILAGNDDPKLPLVTCSTDHKTAYLLAPS 300 Query 267 IISGDQIQNATSGMDQRGIGYVVDLQFKGPAANIWADYTAAHIGTQTAFTLDSQVVSAPQ 326 IISGDQIQNATSGMDQR IGYVVDLQFK AAN WADYTAAHIGTQTAFTLDSQVVSAPQ Sbjct 301 IISGDQIQNATSGMDQRSIGYVVDLQFKSQAANTWADYTAAHIGTQTAFTLDSQVVSAPQ 360 Query 327 IQEAIPGGRTQISGGDPPFTAATARQLANVLKYGSLPLSFEPSEAQTVSATLGLSSLRAG 386 I EAIPGGRTQISGG+PPF+A+TARQLANVLKYGSLPLSFE SEAQTVSATLGL+SLRAG Sbjct 361 ILEAIPGGRTQISGGEPPFSASTARQLANVLKYGSLPLSFESSEAQTVSATLGLTSLRAG 420 Query 387 MIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGSMVFAILVLLGRYINYTLDLAGIAGL 446 +IAGAIGL LVL+YSLLYYRVLGLLTALSL+ASG+MVFAILVLLGRYINYTLDLAGIAGL Sbjct 421 LIAGAIGLALVLLYSLLYYRVLGLLTALSLIASGAMVFAILVLLGRYINYTLDLAGIAGL 480 Query 447 IIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTIVSGNAVTFLAAAVLYFL 506 IIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTIVSGNAVTFLAAAVLYFL Sbjct 481 IIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTIVSGNAVTFLAAAVLYFL 540 Query 507 AIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSSLLAKPAYNGLGAVQQVARERRA 566 AIGQVKGFAFTLGLTTILD+VVVFLVTWPLVYLASKS LAKPAYNGLGAVQQVARERRA Sbjct 541 AIGQVKGFAFTLGLTTILDIVVVFLVTWPLVYLASKSPRLAKPAYNGLGAVQQVARERRA 600 Query 567 --------MARTGR 572 +A+TGR Sbjct 601 SDSRTRSGIAKTGR 614 >gi|307085273|ref|ZP_07494386.1| protein-export membrane protein SecD [Mycobacterium tuberculosis SUMu012] gi|308365181|gb|EFP54032.1| protein-export membrane protein SecD [Mycobacterium tuberculosis SUMu012] Length=427 Score = 853 bits (2204), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/427 (100%), Positives = 427/427 (100%), Gaps = 0/427 (0%) Query 147 QPAAPPPAQSGAPASPQPGAQPRPYPQDPAPSPNPTSPASPPPAPPAEAPATDPRKDLAE 206 QPAAPPPAQSGAPASPQPGAQPRPYPQDPAPSPNPTSPASPPPAPPAEAPATDPRKDLAE Sbjct 1 QPAAPPPAQSGAPASPQPGAQPRPYPQDPAPSPNPTSPASPPPAPPAEAPATDPRKDLAE 60 Query 207 RIAQEKKLRQSTNQYMQMVALQFQATRCESDDILAGNDDPKLPLVTCSTDHKTAYLLAPS 266 RIAQEKKLRQSTNQYMQMVALQFQATRCESDDILAGNDDPKLPLVTCSTDHKTAYLLAPS Sbjct 61 RIAQEKKLRQSTNQYMQMVALQFQATRCESDDILAGNDDPKLPLVTCSTDHKTAYLLAPS 120 Query 267 IISGDQIQNATSGMDQRGIGYVVDLQFKGPAANIWADYTAAHIGTQTAFTLDSQVVSAPQ 326 IISGDQIQNATSGMDQRGIGYVVDLQFKGPAANIWADYTAAHIGTQTAFTLDSQVVSAPQ Sbjct 121 IISGDQIQNATSGMDQRGIGYVVDLQFKGPAANIWADYTAAHIGTQTAFTLDSQVVSAPQ 180 Query 327 IQEAIPGGRTQISGGDPPFTAATARQLANVLKYGSLPLSFEPSEAQTVSATLGLSSLRAG 386 IQEAIPGGRTQISGGDPPFTAATARQLANVLKYGSLPLSFEPSEAQTVSATLGLSSLRAG Sbjct 181 IQEAIPGGRTQISGGDPPFTAATARQLANVLKYGSLPLSFEPSEAQTVSATLGLSSLRAG 240 Query 387 MIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGSMVFAILVLLGRYINYTLDLAGIAGL 446 MIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGSMVFAILVLLGRYINYTLDLAGIAGL Sbjct 241 MIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGSMVFAILVLLGRYINYTLDLAGIAGL 300 Query 447 IIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTIVSGNAVTFLAAAVLYFL 506 IIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTIVSGNAVTFLAAAVLYFL Sbjct 301 IIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTIVSGNAVTFLAAAVLYFL 360 Query 507 AIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSSLLAKPAYNGLGAVQQVARERRA 566 AIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSSLLAKPAYNGLGAVQQVARERRA Sbjct 361 AIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSSLLAKPAYNGLGAVQQVARERRA 420 Query 567 MARTGRG 573 MARTGRG Sbjct 421 MARTGRG 427 >gi|221229642|ref|YP_002503058.1| preprotein translocase subunit SecD [Mycobacterium leprae Br4923] gi|13092712|emb|CAC29995.1| putative protein-export membrane protein [Mycobacterium leprae] gi|219932749|emb|CAR70580.1| putative protein-export membrane protein [Mycobacterium leprae Br4923] Length=597 Score = 845 bits (2182), Expect = 0.0, Method: Compositional matrix adjust. Identities = 469/583 (81%), Positives = 504/583 (87%), Gaps = 22/583 (3%) Query 1 VASSSAPVHPARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGS 60 VASSSAPVH RYLS+FLV+ IG+YLL F TGDK P+LGIDLQGGTRVTLTARTPDGS Sbjct 27 VASSSAPVHFGRYLSMFLVLFIGVYLLAFLTGDKRVVPRLGIDLQGGTRVTLTARTPDGS 86 Query 61 APSREALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRP 120 PSREAL+QAQQIIS+RVNGLGVSGSEVVVDGDNLVITVPGNDG+EARNLGQTARLYIRP Sbjct 87 RPSREALSQAQQIISSRVNGLGVSGSEVVVDGDNLVITVPGNDGNEARNLGQTARLYIRP 146 Query 121 VLNSMPAQPAAEEPQPAPSAEPQPPGQPAAPPPAQSGAPASP-QPGAQPRPYPQDPAPSP 179 VLNS+P Q ++P+P G PA P + AP P PGAQPRPY QDP SP Sbjct 147 VLNSLPVQ-RGQDPKP---------GSPAGTLP--NFAPMPPDHPGAQPRPYLQDPTSSP 194 Query 180 NP--------TSPASPPPAPPAEAPAT-DPRKDLAERIAQEKKLRQSTNQYMQMVALQFQ 230 + T A P P E PA DPRKDLAERIA+EKK RQST Q +Q +ALQF+ Sbjct 195 SSDPMPSPVPTGAALPGEVPSVEQPAPPDPRKDLAERIAEEKKWRQSTKQSIQFLALQFE 254 Query 231 ATRCESDDILAGNDDPKLPLVTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVD 290 +T C+ DDILAGNDDP LPL TCSTDH AYLLAPSIISGDQIQN+TSGM+QRG+GYVVD Sbjct 255 STHCDKDDILAGNDDPNLPLATCSTDHNMAYLLAPSIISGDQIQNSTSGMNQRGVGYVVD 314 Query 291 LQFKGPAANIWADYTAAHIGTQTAFTLDSQVVSAPQIQEAIPGGRTQISGGDPPFTAATA 350 LQFK AA++WAD+TAAHIGTQTAFTLDS+VVS P I EAI GGRTQISGGDPPFTAATA Sbjct 315 LQFKSAAADVWADFTAAHIGTQTAFTLDSEVVSVPVINEAILGGRTQISGGDPPFTAATA 374 Query 351 RQLANVLKYGSLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGL 410 RQLANVLKYGSLPLSFEPSEAQTVSATLGL+SLRAG+IAGAIGL LVL+YSLLYYRVLGL Sbjct 375 RQLANVLKYGSLPLSFEPSEAQTVSATLGLTSLRAGLIAGAIGLSLVLLYSLLYYRVLGL 434 Query 411 LTALSLVASGSMVFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIRE 470 LTA SL SG+++FAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIRE Sbjct 435 LTAFSLFCSGTIIFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIRE 494 Query 471 GRSFRSAVPRGWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVF 530 GRSFRSAVPRGW RARKTIVSGNAVTFLAAAVL+FLAIGQVKGFAFTLGLTTILDLVVVF Sbjct 495 GRSFRSAVPRGWVRARKTIVSGNAVTFLAAAVLHFLAIGQVKGFAFTLGLTTILDLVVVF 554 Query 531 LVTWPLVYLASKSSLLAKPAYNGLGAVQQVARERRAMARTGRG 573 LVTWPLVYLASKS LLA+PAYNGLGAVQQVARERRA A+TGRG Sbjct 555 LVTWPLVYLASKSPLLARPAYNGLGAVQQVARERRASAKTGRG 597 >gi|161723271|ref|NP_301427.2| preprotein translocase subunit SecD [Mycobacterium leprae TN] gi|6648084|sp|P38387.2|SECD_MYCLE RecName: Full=Protein translocase subunit SecD gi|3136009|emb|CAA19080.1| protein export membrane protein SecD [Mycobacterium leprae] Length=571 Score = 842 bits (2176), Expect = 0.0, Method: Compositional matrix adjust. Identities = 468/583 (81%), Positives = 504/583 (87%), Gaps = 22/583 (3%) Query 1 VASSSAPVHPARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGS 60 +ASSSAPVH RYLS+FLV+ IG+YLL F TGDK P+LGIDLQGGTRVTLTARTPDGS Sbjct 1 MASSSAPVHFGRYLSMFLVLFIGVYLLAFLTGDKRVVPRLGIDLQGGTRVTLTARTPDGS 60 Query 61 APSREALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRP 120 PSREAL+QAQQIIS+RVNGLGVSGSEVVVDGDNLVITVPGNDG+EARNLGQTARLYIRP Sbjct 61 RPSREALSQAQQIISSRVNGLGVSGSEVVVDGDNLVITVPGNDGNEARNLGQTARLYIRP 120 Query 121 VLNSMPAQPAAEEPQPAPSAEPQPPGQPAAPPPAQSGAPASP-QPGAQPRPYPQDPAPSP 179 VLNS+P Q ++P+P G PA P + AP P PGAQPRPY QDP SP Sbjct 121 VLNSLPVQ-RGQDPKP---------GSPAGTLP--NFAPMPPDHPGAQPRPYLQDPTSSP 168 Query 180 NP--------TSPASPPPAPPAEAPAT-DPRKDLAERIAQEKKLRQSTNQYMQMVALQFQ 230 + T A P P E PA DPRKDLAERIA+EKK RQST Q +Q +ALQF+ Sbjct 169 SSDPMPSPVPTGAALPGEVPSVEQPAPPDPRKDLAERIAEEKKWRQSTKQSIQFLALQFE 228 Query 231 ATRCESDDILAGNDDPKLPLVTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVD 290 +T C+ DDILAGNDDP LPL TCSTDH AYLLAPSIISGDQIQN+TSGM+QRG+GYVVD Sbjct 229 STHCDKDDILAGNDDPNLPLATCSTDHNMAYLLAPSIISGDQIQNSTSGMNQRGVGYVVD 288 Query 291 LQFKGPAANIWADYTAAHIGTQTAFTLDSQVVSAPQIQEAIPGGRTQISGGDPPFTAATA 350 LQFK AA++WAD+TAAHIGTQTAFTLDS+VVS P I EAI GGRTQISGGDPPFTAATA Sbjct 289 LQFKSAAADVWADFTAAHIGTQTAFTLDSEVVSVPVINEAILGGRTQISGGDPPFTAATA 348 Query 351 RQLANVLKYGSLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGL 410 RQLANVLKYGSLPLSFEPSEAQTVSATLGL+SLRAG+IAGAIGL LVL+YSLLYYRVLGL Sbjct 349 RQLANVLKYGSLPLSFEPSEAQTVSATLGLTSLRAGLIAGAIGLSLVLLYSLLYYRVLGL 408 Query 411 LTALSLVASGSMVFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIRE 470 LTA SL SG+++FAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIRE Sbjct 409 LTAFSLFCSGTIIFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIRE 468 Query 471 GRSFRSAVPRGWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVF 530 GRSFRSAVPRGW RARKTIVSGNAVTFLAAAVL+FLAIGQVKGFAFTLGLTTILDLVVVF Sbjct 469 GRSFRSAVPRGWVRARKTIVSGNAVTFLAAAVLHFLAIGQVKGFAFTLGLTTILDLVVVF 528 Query 531 LVTWPLVYLASKSSLLAKPAYNGLGAVQQVARERRAMARTGRG 573 LVTWPLVYLASKS LLA+PAYNGLGAVQQVARERRA A+TGRG Sbjct 529 LVTWPLVYLASKSPLLARPAYNGLGAVQQVARERRASAKTGRG 571 >gi|118471632|ref|YP_887280.1| preprotein translocase subunit SecD [Mycobacterium smegmatis str. MC2 155] gi|118172919|gb|ABK73815.1| protein-export membrane protein SecD [Mycobacterium smegmatis str. MC2 155] Length=620 Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/623 (70%), Positives = 485/623 (78%), Gaps = 53/623 (8%) Query 1 VASSSAPVHPARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGS 60 +ASSSAPVHPARYL++FLV+L+G+YLLVF TGDK PKLGIDLQGGTRVTLTARTPDGS Sbjct 1 MASSSAPVHPARYLTLFLVLLVGVYLLVFLTGDKKPEPKLGIDLQGGTRVTLTARTPDGS 60 Query 61 APSREALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRP 120 AP+R+AL QAQQIISARV+GLGVSGSEVV+DGDNLVITVPGNDG+EARNLGQTARLYIRP Sbjct 61 APTRDALNQAQQIISARVDGLGVSGSEVVIDGDNLVITVPGNDGNEARNLGQTARLYIRP 120 Query 121 VLNSMPAQPAAEEPQPAPSA--------------------------------------EP 142 V+++M AQP E+ QP A + Sbjct 121 VIHAMAAQPPTEDGQPPAGAPGAPGAPGGAPGAPGLPGLPGLSGLPGMPGAPGAPGAPQE 180 Query 143 QPPGQPA---APPPAQSGAPASPQPGAQPRPYPQDPAPSPNPTSPASPPPAPPAEAPATD 199 PPG P AP PA QP QPRPYP +PAP+P +PA P P E P Sbjct 181 APPGMPVPGEAPGGEAPAPPAGEQPAPQPRPYPLEPAPTPGEPTPAPAPEPAPGENPPAA 240 Query 200 -------PRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDILAGNDDPKLPLVT 252 + DLA+RIA K+ RQST+ MQ++ LQ QA C DDILAGNDDP LPL+T Sbjct 241 PAPGADGDKADLAQRIATAKQWRQSTDPTMQILGLQVQANLCGEDDILAGNDDPNLPLIT 300 Query 253 CSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANIWADYTAAHIGTQ 312 CSTD T YLL SI+SG++I+NATSG+DQ+ YVVD++FK A WAD+TAA++GTQ Sbjct 301 CSTDGSTVYLLNKSIMSGEEIKNATSGLDQQQGQYVVDVEFKSGGAQTWADFTAANVGTQ 360 Query 313 TAFTLDSQVVSAPQIQEAIPGGRTQISGGDPPFTAATARQLANVLKYGSLPLSFEPSEAQ 372 TAFTLDS+VVSAP+I+EAIPGG TQI+G FTA +A++LANVLKYGSLPLSFE SEA+ Sbjct 361 TAFTLDSKVVSAPEIREAIPGGNTQITG---QFTADSAKELANVLKYGSLPLSFESSEAE 417 Query 373 TVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGSMVFAILVLLGR 432 TVSATLGLSSLRAG+IAGAIGL VL+YSLLYYRVLGLL ALSLVA+G++V+AILVLLGR Sbjct 418 TVSATLGLSSLRAGLIAGAIGLAAVLLYSLLYYRVLGLLVALSLVAAGAVVYAILVLLGR 477 Query 433 YINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTIVSG 492 YI YTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGW RARKTIVSG Sbjct 478 YIGYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWVRARKTIVSG 537 Query 493 NAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSSLLAKPAYN 552 NAVTFLAAAVLY LAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKS +AKP N Sbjct 538 NAVTFLAAAVLYVLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSPTMAKPKLN 597 Query 553 GLGAVQQVARERRAM--ARTGRG 573 GLGAVQQ+ARERR + A GRG Sbjct 598 GLGAVQQIARERREVSHATAGRG 620 >gi|169629964|ref|YP_001703613.1| preprotein translocase subunit SecD [Mycobacterium abscessus ATCC 19977] gi|169241931|emb|CAM62959.1| Probable protein-export membrane protein SecD [Mycobacterium abscessus] Length=586 Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/598 (70%), Positives = 476/598 (80%), Gaps = 42/598 (7%) Query 1 VASSSAPVHPARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGS 60 +ASSSAPVHP RYL+ FLV+LIG YLLVF TGDK PKLGIDLQGGTRVTLTARTPDGS Sbjct 1 MASSSAPVHPMRYLAAFLVLLIGAYLLVFLTGDKQPKPKLGIDLQGGTRVTLTARTPDGS 60 Query 61 APSREALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRP 120 P++EAL QAQQII+ARVNGLGVSGSEV++DGDNLVITVPGNDGSEARNLGQTA+LYIRP Sbjct 61 KPTKEALTQAQQIINARVNGLGVSGSEVIIDGDNLVITVPGNDGSEARNLGQTAKLYIRP 120 Query 121 VLNSMPAQPAAEEPQPAPSAEPQPPGQPAAPPPAQSGAPASPQPGAQP------------ 168 V+ ++PAQP E P+P A Q GQPA PA+ P +P G Sbjct 121 VVQAVPAQPK-ENPEPGAGAPQQ--GQPA---PAKEATPPAPGAGKSTPAAPPSPKPQPR 174 Query 169 ----------RPYPQDPAPSPNPTSPASPPPAPPAEAPATDPRKDLAERIAQEKKLRQST 218 P P +PN T+ +PP P + + + RK L I EK++RQS Sbjct 175 PYPAQTTTPPPPPPATQPATPNATTAPAPPADLPPKPGSGEERKQL---IDFEKQIRQSE 231 Query 219 NQYMQMVALQFQATRC-ESDDILAGNDDPKLPLVTCSTDH---KTAYLLAPSIISGDQIQ 274 + +QM+ALQ QA+RC + DD LAGNDDP LPLVTC D K AYLL SIISG++I+ Sbjct 232 DPRIQMLALQVQASRCYDPDDPLAGNDDPNLPLVTCGDDSQGGKAAYLLDKSIISGEEIK 291 Query 275 NATSGMDQ-RGIGYVVDLQFKGPAANIWADYTAAHI--GTQTAFTLDSQVVSAPQIQEAI 331 +A+SG+DQ RGI YVV ++FK A +WADYT+AH GTQTAFTLDS+V+SAP I+E I Sbjct 292 DASSGLDQQRGI-YVVSMEFKPTGAKVWADYTSAHWQQGTQTAFTLDSKVISAPAIREPI 350 Query 332 PGGRTQISGGDPPFTAATARQLANVLKYGSLPLSFEPSEAQTVSATLGLSSLRAGMIAGA 391 PGG+T+ISG FT+ +A+QLA LKYGSLPLSFE S+AQTVSATLGL+SL+AG+IAGA Sbjct 351 PGGKTEISG---QFTSDSAKQLAAALKYGSLPLSFESSDAQTVSATLGLTSLKAGLIAGA 407 Query 392 IGLLLVLVYSLLYYRVLGLLTALSLVASGSMVFAILVLLGRYINYTLDLAGIAGLIIGIG 451 IGL +VL+YSL+YYRVLGLLTALSLVASG+MVFAILVLLGRYI+YTLDLAGIAGLIIGIG Sbjct 408 IGLAIVLLYSLIYYRVLGLLTALSLVASGAMVFAILVLLGRYISYTLDLAGIAGLIIGIG 467 Query 452 TTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTIVSGNAVTFLAAAVLYFLAIGQV 511 TTADSFVVFFERIKDEIREGRS+RSAVPRGWARARKTI+SGNAVT LAA VLY LAIGQV Sbjct 468 TTADSFVVFFERIKDEIREGRSYRSAVPRGWARARKTILSGNAVTLLAAVVLYILAIGQV 527 Query 512 KGFAFTLGLTTILDLVVVFLVTWPLVYLASKSSLLAKPAYNGLGAVQQVARERRAMAR 569 KGFAFTLGLTTILD+VVVFLVTWPLVYL+SKS+ L+KPAYNGLGAVQQ+ARER+A A Sbjct 528 KGFAFTLGLTTILDVVVVFLVTWPLVYLSSKSATLSKPAYNGLGAVQQIARERKAAAH 585 >gi|466811|gb|AAA17086.1| secD [Mycobacterium leprae] Length=701 Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/496 (80%), Positives = 423/496 (86%), Gaps = 22/496 (4%) Query 88 VVVDGDNLVITVPGNDGSEARNLGQTARLYIRPVLNSMPAQPAAEEPQPAPSAEPQPPGQ 147 +VVDGDNLVITVPGNDG+EARNLGQTARLYIRPVLNS+P Q ++P+P G Sbjct 1 MVVDGDNLVITVPGNDGNEARNLGQTARLYIRPVLNSLPVQ-RGQDPKP---------GS 50 Query 148 PAAPPPAQSGAPASP-QPGAQPRPYPQDPAPSPNP--------TSPASPPPAPPAEAPAT 198 PA P + AP P PGAQPRPY QDP SP+ T A P P E PA Sbjct 51 PAGTLP--NFAPMPPDHPGAQPRPYLQDPTSSPSSDPMPSPVPTGAALPGEVPSVEQPAP 108 Query 199 -DPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDILAGNDDPKLPLVTCSTDH 257 DPRKDLAERIA+EKK RQST Q +Q +ALQF++T C+ DDILAGNDDP LPL TCSTDH Sbjct 109 PDPRKDLAERIAEEKKWRQSTKQSIQFLALQFESTHCDKDDILAGNDDPNLPLATCSTDH 168 Query 258 KTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANIWADYTAAHIGTQTAFTL 317 AYLLAPSIISGDQIQN+TSGM+QRG+GYVVDLQFK AA++WAD+TAAHIGTQTAFTL Sbjct 169 NMAYLLAPSIISGDQIQNSTSGMNQRGVGYVVDLQFKSAAADVWADFTAAHIGTQTAFTL 228 Query 318 DSQVVSAPQIQEAIPGGRTQISGGDPPFTAATARQLANVLKYGSLPLSFEPSEAQTVSAT 377 DS+VVS P I EAI GGRTQISGGDPPFTAATARQLANVLKYGSLPLSFEPSEAQTVSAT Sbjct 229 DSEVVSVPVINEAILGGRTQISGGDPPFTAATARQLANVLKYGSLPLSFEPSEAQTVSAT 288 Query 378 LGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGSMVFAILVLLGRYINYT 437 LGL+SLRAG+IAGAIGL LVL+YSLLYYRVLGLLTA SL SG+++FAILVLLGRYINYT Sbjct 289 LGLTSLRAGLIAGAIGLSLVLLYSLLYYRVLGLLTAFSLFCSGTIIFAILVLLGRYINYT 348 Query 438 LDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTIVSGNAVTF 497 LDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGW RARKTIVSGNAVTF Sbjct 349 LDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWVRARKTIVSGNAVTF 408 Query 498 LAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSSLLAKPAYNGLGAV 557 LAAAVL+FLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKS LLA+PAYNGLGAV Sbjct 409 LAAAVLHFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSPLLARPAYNGLGAV 468 Query 558 QQVARERRAMARTGRG 573 QQVARERRA AR G Sbjct 469 QQVARERRASARQDGG 484 >gi|289762758|ref|ZP_06522136.1| export membrane protein secD [Mycobacterium tuberculosis GM 1503] gi|289710264|gb|EFD74280.1| export membrane protein secD [Mycobacterium tuberculosis GM 1503] Length=386 Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/342 (99%), Positives = 342/342 (100%), Gaps = 0/342 (0%) Query 1 VASSSAPVHPARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGS 60 +ASSSAPVHPARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGS Sbjct 1 MASSSAPVHPARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGS 60 Query 61 APSREALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRP 120 APSREALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRP Sbjct 61 APSREALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRP 120 Query 121 VLNSMPAQPAAEEPQPAPSAEPQPPGQPAAPPPAQSGAPASPQPGAQPRPYPQDPAPSPN 180 VLNSMPAQPAAEEPQPAPSAEPQPPGQPAAPPPAQSGAPASPQPGAQPRPYPQDPAPSPN Sbjct 121 VLNSMPAQPAAEEPQPAPSAEPQPPGQPAAPPPAQSGAPASPQPGAQPRPYPQDPAPSPN 180 Query 181 PTSPASPPPAPPAEAPATDPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDIL 240 PTSPASPPPAPPAEAPATDPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDIL Sbjct 181 PTSPASPPPAPPAEAPATDPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDIL 240 Query 241 AGNDDPKLPLVTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANI 300 AGNDDPKLPLVTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANI Sbjct 241 AGNDDPKLPLVTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANI 300 Query 301 WADYTAAHIGTQTAFTLDSQVVSAPQIQEAIPGGRTQISGGD 342 WADYTAAHIGTQTAFTLDSQVVSAPQIQEAIPGGRTQISGGD Sbjct 301 WADYTAAHIGTQTAFTLDSQVVSAPQIQEAIPGGRTQISGGD 342 >gi|240171977|ref|ZP_04750636.1| preprotein translocase subunit SecD [Mycobacterium kansasii ATCC 12478] Length=394 Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/392 (91%), Positives = 366/392 (94%), Gaps = 6/392 (1%) Query 188 PPA--PPAEAPAT-DPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDILAGND 244 PPA PP E PA DPRKDLAERIAQEKK RQST+ Y+QMVALQF+ATRC+ +DILAGND Sbjct 3 PPADLPPGEQPAPPDPRKDLAERIAQEKKWRQSTSPYIQMVALQFEATRCDKEDILAGND 62 Query 245 DPKLPLVTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANIWADY 304 DPKLPLVTCSTDHKTAYLL PSIISGDQIQ+AT GMDQRG+GYVVDLQFK AA+ WA Y Sbjct 63 DPKLPLVTCSTDHKTAYLLEPSIISGDQIQDATFGMDQRGVGYVVDLQFKSGAADEWARY 122 Query 305 TAAHIGTQTAFTLDSQVVSAPQIQEAIPGGRTQISGGDPPFTAATARQLANVLKYGSLPL 364 TAAH+G QTAFTLDSQVVSAPQI E IPGGRTQISGGDPPFTAATARQLANVLKYGSLPL Sbjct 123 TAAHLGKQTAFTLDSQVVSAPQILEPIPGGRTQISGGDPPFTAATARQLANVLKYGSLPL 182 Query 365 SFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGSMVF 424 SFE SEAQTVSATLGL+SLRAG+IAG IGL LVLVYSLLYYRVLGLLTALSLVASG+MVF Sbjct 183 SFESSEAQTVSATLGLTSLRAGLIAGGIGLALVLVYSLLYYRVLGLLTALSLVASGAMVF 242 Query 425 AILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWAR 484 AILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWAR Sbjct 243 AILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWAR 302 Query 485 ARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSS 544 ARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSS Sbjct 303 ARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSS 362 Query 545 LLAKPAYNGLGAVQQVARERRAM---ARTGRG 573 LAKPAYNGLGAVQQVARERRA A+TGRG Sbjct 363 TLAKPAYNGLGAVQQVARERRAQAGAAKTGRG 394 >gi|226306414|ref|YP_002766374.1| protein-export membrane protein SecD [Rhodococcus erythropolis PR4] gi|226185531|dbj|BAH33635.1| protein-export membrane protein SecD [Rhodococcus erythropolis PR4] Length=573 Score = 638 bits (1645), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/572 (62%), Positives = 431/572 (76%), Gaps = 12/572 (2%) Query 1 VASSSAPVHPARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGS 60 +A S+ VHP RYL++F V+++ +Y LVFFTGDK PKLGIDLQGGTRVTLTARTPDGS Sbjct 1 MAPSTGTVHPVRYLALFGVLVVALYALVFFTGDKSATPKLGIDLQGGTRVTLTARTPDGS 60 Query 61 APSREALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRP 120 APS+++L QAQ+II RVNGLGVSGSEVVVDGDNLVITVPG+D ++AR+LGQTARLYIRP Sbjct 61 APSQDSLKQAQEIIETRVNGLGVSGSEVVVDGDNLVITVPGDDSAQARSLGQTARLYIRP 120 Query 121 VLNSMPAQPAAEEPQPAPSAEPQPPGQPAAPPPAQSGAPASPQPGAQPRPY-PQDPAPSP 179 V S+ A + + E PA PA APA P Q RP+ QDP Sbjct 121 VTGSIDV--ATRDANRTATPEVPAAETPATDAPAPE-APADGTPTPQNRPFLAQDPTTPE 177 Query 180 NPTSPASPPPAPPAEAPA--TDPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESD 237 +P + PAPP +A + TD A IA + LRQS++ +Q A+ C Sbjct 178 ATPAPETTTPAPPVDASSDGTDEGDAAAAEIAAARALRQSSDPTVQQQAVA--NLDCSVA 235 Query 238 DILAGNDDPKLPLVTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPA 297 D L GNDDP LPLV CS D YLL PSII G +I +A+S + + + + L FK Sbjct 236 DPLRGNDDPTLPLVACSQDGLNIYLLGPSIIDGQEIADASSVFNSQQSRHEISLSFKTTG 295 Query 298 ANIWADYTAAHIGTQTAFTLDSQVVSAPQIQEAIPGGR-TQISGGDPPFTAATARQLANV 356 +N WA++T+A+IG Q AFTLDS+VVSAP IQ A P G T I+G FTA +A++LAN Sbjct 296 SNTWAEFTSANIGKQAAFTLDSKVVSAPTIQGATPAGSATSITGS---FTAESAKELANT 352 Query 357 LKYGSLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSL 416 LKYGSLPLSF SEA+TVSATLGL+SL+A +IAGA+GL+LVL+Y L+YYR+LG+LTALSL Sbjct 353 LKYGSLPLSFAASEAETVSATLGLASLQAALIAGAVGLVLVLLYCLVYYRMLGVLTALSL 412 Query 417 VASGSMVFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRS 476 + SG MV+AI+VLLGRYI +TLDLAG+AGLIIGIG TADSFVVFFERIKDE+REGRSFRS Sbjct 413 ILSGVMVYAIMVLLGRYIGFTLDLAGMAGLIIGIGMTADSFVVFFERIKDEMREGRSFRS 472 Query 477 AVPRGWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPL 536 AVPRGWARAR+TI+SGNAV+F+AAAVLY LA+GQV+GFAFTLGLTTILD++VVFLVTWPL Sbjct 473 AVPRGWARARRTILSGNAVSFIAAAVLYVLAVGQVRGFAFTLGLTTILDVIVVFLVTWPL 532 Query 537 VYLASKSSLLAKPAYNGLGAVQQVARERRAMA 568 V +AS+S+ +KP+ NGLGAVQ+VARER+ A Sbjct 533 VSMASRSAFWSKPSVNGLGAVQEVARERKVAA 564 >gi|229491968|ref|ZP_04385785.1| protein-export membrane protein SecD [Rhodococcus erythropolis SK121] gi|229321100|gb|EEN86904.1| protein-export membrane protein SecD [Rhodococcus erythropolis SK121] Length=573 Score = 637 bits (1644), Expect = 1e-180, Method: Compositional matrix adjust. Identities = 357/577 (62%), Positives = 435/577 (76%), Gaps = 22/577 (3%) Query 1 VASSSAPVHPARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGS 60 +A S+ VHP RYL++F V+++ +Y LVFFTGDK PKLGIDLQGGTRVTLTARTPDGS Sbjct 1 MAPSTGTVHPVRYLALFGVLVVALYALVFFTGDKSATPKLGIDLQGGTRVTLTARTPDGS 60 Query 61 APSREALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRP 120 APS+++L QAQ+II RVNGLGVSGSEVVVDGDNLVITVPG+D ++AR+LGQTARLYIRP Sbjct 61 APSQDSLKQAQEIIETRVNGLGVSGSEVVVDGDNLVITVPGDDSAQARSLGQTARLYIRP 120 Query 121 VLNSMPAQPAAEEPQPAPSAEPQPPGQPAAPPPAQSG-APASPQPGAQP---RPY-PQDP 175 V S+ P A PAA PA AP +P G Q RP+ QDP Sbjct 121 VTGSIDVATRDANRTATPEA-------PAAETPATDAPAPEAPADGTQTPQNRPFLAQDP 173 Query 176 APSPNPT-SPASPPPAPPAEAPA--TDPRKDLAERIAQEKKLRQSTNQYMQMVALQFQAT 232 +P+ T +P + PAP +AP+ TD A IA + LRQS++ +Q A+ Sbjct 174 T-TPDATPAPQTTTPAPTGDAPSDGTDEGDAAAAEIAAARALRQSSDPTVQQQAVA--NL 230 Query 233 RCESDDILAGNDDPKLPLVTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQ 292 C D L GNDDP LPLV CS D YLL PSII G +I +A+S + + + + L Sbjct 231 DCSVADPLRGNDDPTLPLVACSQDGLNIYLLGPSIIDGQEIADASSVFNSQQSRHEISLS 290 Query 293 FKGPAANIWADYTAAHIGTQTAFTLDSQVVSAPQIQEAIPGGR-TQISGGDPPFTAATAR 351 FK +N WA++T+A+IG Q AFTLDS+VVSAP IQ A P G T I+G FTA +A+ Sbjct 291 FKTTGSNTWAEFTSANIGKQAAFTLDSKVVSAPTIQGATPAGSATSITGS---FTAESAK 347 Query 352 QLANVLKYGSLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLL 411 +LAN LKYGSLPLSF SEA+TVSATLGL+SL+A +IAGA+GL+LVL+Y L+YYR+LG+L Sbjct 348 ELANTLKYGSLPLSFAASEAETVSATLGLASLQAALIAGAVGLVLVLLYCLVYYRMLGVL 407 Query 412 TALSLVASGSMVFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREG 471 TALSL+ SG MV+AI+VLLGRYI +TLDLAG+AGLIIGIG TADSFVVFFERIKDE+REG Sbjct 408 TALSLILSGVMVYAIMVLLGRYIGFTLDLAGMAGLIIGIGMTADSFVVFFERIKDEMREG 467 Query 472 RSFRSAVPRGWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFL 531 RSFRSAVPRGWARAR+TI+SGNAV+F+AAAVLY LA+GQV+GFAFTLGLTTILD++VVFL Sbjct 468 RSFRSAVPRGWARARRTILSGNAVSFIAAAVLYVLAVGQVRGFAFTLGLTTILDVIVVFL 527 Query 532 VTWPLVYLASKSSLLAKPAYNGLGAVQQVARERRAMA 568 VTWPLV +AS+S+ +KP+ NGLGAVQ+VARER+ A Sbjct 528 VTWPLVSMASRSAFWSKPSVNGLGAVQEVARERKVAA 564 >gi|296170832|ref|ZP_06852397.1| protein-export membrane protein SecD [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894521|gb|EFG74261.1| protein-export membrane protein SecD [Mycobacterium parascrofulaceum ATCC BAA-614] Length=387 Score = 621 bits (1602), Expect = 9e-176, Method: Compositional matrix adjust. Identities = 343/386 (89%), Positives = 363/386 (95%), Gaps = 3/386 (0%) Query 191 PPAEAPAT-DPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDILAGNDDPKLP 249 PPAE PA DPRK+LAERIA EKK RQST Q +Q +ALQFQATRC+ +DILAGNDDP LP Sbjct 2 PPAEQPAPPDPRKELAERIADEKKWRQSTRQGVQFLALQFQATRCDKEDILAGNDDPNLP 61 Query 250 LVTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANIWADYTAAHI 309 LVTCSTDHK AYLLAPSIISGDQI +A+SGM+QRGIGYVVD+QFK AAN WAD+TAAHI Sbjct 62 LVTCSTDHKVAYLLAPSIISGDQIADASSGMNQRGIGYVVDVQFKPAAANTWADFTAAHI 121 Query 310 GTQTAFTLDSQVVSAPQIQEAIPGGRTQISGGDPPFTAATARQLANVLKYGSLPLSFEPS 369 GTQTAFTLDSQVVSAP IQEAIPGGRTQI+GGDPPFTAATA+QLANVLKYGSLPLSF+ S Sbjct 122 GTQTAFTLDSQVVSAPMIQEAIPGGRTQITGGDPPFTAATAKQLANVLKYGSLPLSFQSS 181 Query 370 EAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGSMVFAILVL 429 EAQTVSATLGL+SLRAG+IAG IGL+LVL+YSLLYYRVLGLLTALSL+ASG+MVFAILVL Sbjct 182 EAQTVSATLGLTSLRAGLIAGGIGLVLVLLYSLLYYRVLGLLTALSLIASGAMVFAILVL 241 Query 430 LGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTI 489 LGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTI Sbjct 242 LGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTI 301 Query 490 VSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSSLLAKP 549 VSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKS LAKP Sbjct 302 VSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSPTLAKP 361 Query 550 AYNGLGAVQQVARERRAMA--RTGRG 573 AYNGLGAVQQVARERRA A +TGRG Sbjct 362 AYNGLGAVQQVARERRASAQVKTGRG 387 >gi|118463542|ref|YP_882650.1| preprotein translocase subunit SecD [Mycobacterium avium 104] gi|118164829|gb|ABK65726.1| protein-export membrane protein SecD [Mycobacterium avium 104] Length=608 Score = 608 bits (1569), Expect = 6e-172, Method: Compositional matrix adjust. Identities = 336/387 (87%), Positives = 357/387 (93%), Gaps = 8/387 (2%) Query 189 PAPPAEAPATDPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDILAGNDDPKL 248 PAPP DPRKDLAERIA+EKK RQST Q +Q +ALQFQATRC+ DDILAGNDDP Sbjct 228 PAPP------DPRKDLAERIAEEKKWRQSTRQGIQFLALQFQATRCDKDDILAGNDDPAQ 281 Query 249 PLVTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANIWADYTAAH 308 PL+TCSTDHK AYLL PSIISGDQI++A++ +QRGIG+VVDLQFK AAN WAD+TAAH Sbjct 282 PLITCSTDHKVAYLLGPSIISGDQIKDASASQNQRGIGFVVDLQFKPAAANTWADFTAAH 341 Query 309 IGTQTAFTLDSQVVSAPQIQEAIPGGRTQISGGDPPFTAATARQLANVLKYGSLPLSFEP 368 IGTQTAFTLDSQVVSAP IQEAIPGGRTQISGGDPPFTAATA+QLANVLKYGSLPLSF+ Sbjct 342 IGTQTAFTLDSQVVSAPMIQEAIPGGRTQISGGDPPFTAATAKQLANVLKYGSLPLSFQS 401 Query 369 SEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGSMVFAILV 428 SEAQTVSATLGL+SLRAG+IAGAIGLLLVL+YSLLYYRVLGLLTALSL ASG+MVFAIL+ Sbjct 402 SEAQTVSATLGLTSLRAGLIAGAIGLLLVLLYSLLYYRVLGLLTALSLAASGAMVFAILI 461 Query 429 LLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKT 488 LLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGR+FRSAVPRGW RARKT Sbjct 462 LLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRTFRSAVPRGWTRARKT 521 Query 489 IVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSSLLAK 548 IVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKS LAK Sbjct 522 IVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSPTLAK 581 Query 549 PAYNGLGAVQQVARERRAMAR--TGRG 573 PAYNGLGAVQQVARERRA A TG+G Sbjct 582 PAYNGLGAVQQVARERRAAAHVSTGQG 608 >gi|41407141|ref|NP_959977.1| preprotein translocase subunit SecD [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395492|gb|AAS03360.1| SecD [Mycobacterium avium subsp. paratuberculosis K-10] Length=607 Score = 608 bits (1567), Expect = 1e-171, Method: Compositional matrix adjust. Identities = 336/387 (87%), Positives = 357/387 (93%), Gaps = 8/387 (2%) Query 189 PAPPAEAPATDPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDILAGNDDPKL 248 PAPP DPRKDLAERIA+EKK RQST Q +Q +ALQFQATRC+ DDILAGNDDP Sbjct 227 PAPP------DPRKDLAERIAEEKKWRQSTRQGIQFLALQFQATRCDKDDILAGNDDPAQ 280 Query 249 PLVTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANIWADYTAAH 308 PL+TCSTDHK AYLL PSIISGDQI++A++ +QRGIG+VVDLQFK AAN WAD+TAAH Sbjct 281 PLITCSTDHKVAYLLGPSIISGDQIKDASASQNQRGIGFVVDLQFKPAAANTWADFTAAH 340 Query 309 IGTQTAFTLDSQVVSAPQIQEAIPGGRTQISGGDPPFTAATARQLANVLKYGSLPLSFEP 368 IGTQTAFTLDSQVVSAP IQEAIPGGRTQISGGDPPFTAATA+QLANVLKYGSLPLSF+ Sbjct 341 IGTQTAFTLDSQVVSAPMIQEAIPGGRTQISGGDPPFTAATAKQLANVLKYGSLPLSFQS 400 Query 369 SEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGSMVFAILV 428 SEAQTVSATLGL+SLRAG+IAGAIGLLLVL+YSLLYYRVLGLLTALSL ASG+MVFAIL+ Sbjct 401 SEAQTVSATLGLTSLRAGLIAGAIGLLLVLLYSLLYYRVLGLLTALSLAASGAMVFAILI 460 Query 429 LLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKT 488 LLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGR+FRSAVPRGW RARKT Sbjct 461 LLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRTFRSAVPRGWTRARKT 520 Query 489 IVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSSLLAK 548 IVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKS LAK Sbjct 521 IVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSPTLAK 580 Query 549 PAYNGLGAVQQVARERRAMAR--TGRG 573 PAYNGLGAVQQVARERRA A TG+G Sbjct 581 PAYNGLGAVQQVARERRAAAHVSTGQG 607 >gi|254775915|ref|ZP_05217431.1| preprotein translocase subunit SecD [Mycobacterium avium subsp. avium ATCC 25291] Length=379 Score = 606 bits (1563), Expect = 3e-171, Method: Compositional matrix adjust. Identities = 332/377 (89%), Positives = 353/377 (94%), Gaps = 2/377 (0%) Query 199 DPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDILAGNDDPKLPLVTCSTDHK 258 DPRKDLAERIA+EKK RQST Q +Q +ALQFQATRC+ DDILAGNDDP PL+TCSTDHK Sbjct 3 DPRKDLAERIAEEKKWRQSTRQGIQFLALQFQATRCDKDDILAGNDDPAQPLITCSTDHK 62 Query 259 TAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANIWADYTAAHIGTQTAFTLD 318 AYLL PSIISGDQI++A++ +QRGIG+VVDLQFK AAN WAD+TAAHIGTQTAFTLD Sbjct 63 VAYLLGPSIISGDQIKDASASQNQRGIGFVVDLQFKPAAANTWADFTAAHIGTQTAFTLD 122 Query 319 SQVVSAPQIQEAIPGGRTQISGGDPPFTAATARQLANVLKYGSLPLSFEPSEAQTVSATL 378 SQVVSAP IQEAIPGGRTQISGGDPPFTAATA+QLANVLKYGSLPLSF+ SEAQTVSATL Sbjct 123 SQVVSAPMIQEAIPGGRTQISGGDPPFTAATAKQLANVLKYGSLPLSFQSSEAQTVSATL 182 Query 379 GLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGSMVFAILVLLGRYINYTL 438 GL+SLRAG+IAGAIGLLLVL+YSLLYYRVLGLLTALSL ASG+MVFAIL+LLGRYINYTL Sbjct 183 GLTSLRAGLIAGAIGLLLVLLYSLLYYRVLGLLTALSLAASGAMVFAILILLGRYINYTL 242 Query 439 DLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTIVSGNAVTFL 498 DLAGIAGLIIGIGTTADSFVVFFERIKDEIREGR+FRSAVPRGW RARKTIVSGNAVTFL Sbjct 243 DLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRTFRSAVPRGWTRARKTIVSGNAVTFL 302 Query 499 AAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSSLLAKPAYNGLGAVQ 558 AAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKS LAKPAYNGLGAVQ Sbjct 303 AAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSPTLAKPAYNGLGAVQ 362 Query 559 QVARERRAMAR--TGRG 573 QVARERRA A TG+G Sbjct 363 QVARERRAAAHVSTGQG 379 >gi|111023848|ref|YP_706820.1| preprotein translocase subunit SecD [Rhodococcus jostii RHA1] gi|110823378|gb|ABG98662.1| protein-export membrane protein [Rhodococcus jostii RHA1] Length=556 Score = 599 bits (1544), Expect = 5e-169, Method: Compositional matrix adjust. Identities = 356/562 (64%), Positives = 425/562 (76%), Gaps = 24/562 (4%) Query 1 VASSSAPVHPARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGS 60 +A S+ VHP RYL+VF V++ +Y LVFFTGDK PKLGIDLQGGTRVTLTARTPDGS Sbjct 1 MAPSTGSVHPVRYLTVFAVLVAVLYALVFFTGDKSATPKLGIDLQGGTRVTLTARTPDGS 60 Query 61 APSREALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRP 120 P+ ++L QAQ+II RVNGLGVSGSEVV+DGDNLVITVPG+D ++AR+LGQTARLY+RP Sbjct 61 KPTPDSLRQAQEIIETRVNGLGVSGSEVVIDGDNLVITVPGDDSAQARSLGQTARLYVRP 120 Query 121 VLNSMPAQPAAEEPQPAPSAEPQPPGQPAAPPPAQSGAPASPQPGAQPRPYP-QDPAPSP 179 V S A PA + AP+A P PA + P Q RP+P QDP+ SP Sbjct 121 VQTSQAAAPAGTQ---APAAGGTPAQAPAG----------TETPAPQNRPFPAQDPSTSP 167 Query 180 NPTSPASPPPAPPAEAPATDPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDI 239 PT A P PA +A T+ + A+ IA + RQST+ +Q A+ C D Sbjct 168 EPTPTAEPAPA---DASGTE-TAEAADEIAAARATRQSTDPAVQQQAMA--TLDCSVPDP 221 Query 240 LAGNDDPKLPLVTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAAN 299 L GNDDP LPLV CSTD + YLL P+II G +I +ATSG + + + V L FK +N Sbjct 222 LRGNDDPALPLVACSTDGQAVYLLEPAIIDGQEIADATSGYNSQQSRHEVSLTFKSEGSN 281 Query 300 IWADYTAAHIGTQTAFTLDSQVVSAPQIQEAIPGGR-TQISGGDPPFTAATARQLANVLK 358 WA +T+ +IG Q AFTLDS+VVSAP +Q A P G T I+G F+A +A++LAN LK Sbjct 282 TWATFTSQNIGKQAAFTLDSKVVSAPVVQGATPAGSSTSITGS---FSAESAKELANTLK 338 Query 359 YGSLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVA 418 YGSLPLSF SEA+TVSATLGL+SL AG+IAG +GL+LVL+Y LLYYR+LG+LTALSLV Sbjct 339 YGSLPLSFAASEAETVSATLGLASLEAGLIAGLVGLVLVLLYCLLYYRMLGVLTALSLVL 398 Query 419 SGSMVFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAV 478 SG MV+AI+VLLGRYIN+TLDLAGIAGLIIGIG TADSFVVFFERIKDE+REGRSFRSAV Sbjct 399 SGVMVYAIMVLLGRYINFTLDLAGIAGLIIGIGMTADSFVVFFERIKDEMREGRSFRSAV 458 Query 479 PRGWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVY 538 PRGWARAR+TI+SGNAV+F+AAAVLY LA+GQV+GFAFTLGLTTILD+VVVFLVTWPLV+ Sbjct 459 PRGWARARRTILSGNAVSFIAAAVLYILAVGQVRGFAFTLGLTTILDVVVVFLVTWPLVH 518 Query 539 LASKSSLLAKPAYNGLGAVQQV 560 LASKS +KP NGLGAVQQ+ Sbjct 519 LASKSPFWSKPGVNGLGAVQQI 540 >gi|254821448|ref|ZP_05226449.1| preprotein translocase subunit SecD [Mycobacterium intracellulare ATCC 13950] Length=390 Score = 597 bits (1540), Expect = 1e-168, Method: Compositional matrix adjust. Identities = 340/389 (88%), Positives = 359/389 (93%), Gaps = 3/389 (0%) Query 188 PPAPPAEAPAT-DPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDILAGNDDP 246 P APPAE PA+ DPRKDLAERIA EKK RQST Q +Q +ALQFQATRC+ +DILAGNDDP Sbjct 2 PGAPPAEQPASPDPRKDLAERIADEKKWRQSTRQGIQFLALQFQATRCDKEDILAGNDDP 61 Query 247 KLPLVTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANIWADYTA 306 PL+TCSTDHK AYLL PSIISGDQIQ+ATS +QRGIGYVVDLQFK AAN WAD+TA Sbjct 62 TQPLITCSTDHKVAYLLGPSIISGDQIQDATSSQNQRGIGYVVDLQFKSAAANTWADFTA 121 Query 307 AHIGTQTAFTLDSQVVSAPQIQEAIPGGRTQISGGDPPFTAATARQLANVLKYGSLPLSF 366 AHIGTQTAFTLDSQVVSAP IQEAIPGGRTQISGGDPPFTAATA+QLANVLKYGSLPLSF Sbjct 122 AHIGTQTAFTLDSQVVSAPMIQEAIPGGRTQISGGDPPFTAATAKQLANVLKYGSLPLSF 181 Query 367 EPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGSMVFAI 426 E SEAQTVSATLGL+SLRAG+IAGAIGL+LVL+YSLLYYRVLGLLTALSL ASG+MVFAI Sbjct 182 ESSEAQTVSATLGLTSLRAGLIAGAIGLVLVLLYSLLYYRVLGLLTALSLAASGAMVFAI 241 Query 427 LVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARAR 486 LV+LGR INYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGW RAR Sbjct 242 LVILGRQINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWTRAR 301 Query 487 KTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSSLL 546 KTIVSGNAVTFLAAAVLY LAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKS L Sbjct 302 KTIVSGNAVTFLAAAVLYALAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSPTL 361 Query 547 AKPAYNGLGAVQQVARERRAMAR--TGRG 573 AKPAYNGLGA+QQVARERR ++ TGRG Sbjct 362 AKPAYNGLGAIQQVARERRGSSQVTTGRG 390 >gi|333991014|ref|YP_004523628.1| protein-export membrane protein SecD [Mycobacterium sp. JDM601] gi|333486982|gb|AEF36374.1| protein-export membrane protein SecD [Mycobacterium sp. JDM601] Length=692 Score = 586 bits (1510), Expect = 5e-165, Method: Compositional matrix adjust. Identities = 342/460 (75%), Positives = 372/460 (81%), Gaps = 28/460 (6%) Query 126 PAQPAA--EEPQPAPSAEPQPP-----------GQPAAPPPAQSGAPASPQ-PGAQPRPY 171 PAQP +EP PAP + P G P P Q GAPA P PGAQ Sbjct 228 PAQPRPYPQEPAPAPGTTSESPEPEDTTETTTPGVSETPGPTQPGAPAEPPIPGAQLPGL 287 Query 172 PQDPAPSPNPTSPASPPPAPPAEAPATDPRKDLAERIAQEKKLRQSTNQYMQMVALQFQA 231 P P P P P + LA RIA EK+LRQS N+ +Q +ALQ QA Sbjct 288 PGLPGMPGVPGQPGQP--------------QGLAARIAAEKRLRQSDNKVVQALALQIQA 333 Query 232 TRCESDDILAGNDDPKLPLVTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDL 291 +RC+ +DILAGNDDP LPLVTCS DH+TAYLLAPSIISGDQI +A+SGMDQR +V + Sbjct 334 SRCDKEDILAGNDDPDLPLVTCSQDHQTAYLLAPSIISGDQIADASSGMDQRSGSNIVQV 393 Query 292 QFKGPAANIWADYTAAHIGTQTAFTLDSQVVSAPQIQEAIPGGRTQISGGDPPFTAATAR 351 QFK AA++WADYTAAHIGTQTAFTLDSQVVSAPQIQEAIPGGRTQI+GG P FT AR Sbjct 394 QFKSGAADVWADYTAAHIGTQTAFTLDSQVVSAPQIQEAIPGGRTQITGGSPGFTQDEAR 453 Query 352 QLANVLKYGSLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLL 411 QLANVLKYGSLPLSFE SEA+TVSATLG++SLRAG+IAGAIGLLLVLVYSLLYYRVLG+L Sbjct 454 QLANVLKYGSLPLSFESSEAETVSATLGMTSLRAGLIAGAIGLLLVLVYSLLYYRVLGVL 513 Query 412 TALSLVASGSMVFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREG 471 TALSLV +G+MV+AILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREG Sbjct 514 TALSLVVAGAMVYAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREG 573 Query 472 RSFRSAVPRGWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFL 531 RSFRSAVPRGW RARKTIVSGNAVTFLAAAVLYFLA+GQVKGFAFTLGLTTILDLVVVFL Sbjct 574 RSFRSAVPRGWTRARKTIVSGNAVTFLAAAVLYFLAVGQVKGFAFTLGLTTILDLVVVFL 633 Query 532 VTWPLVYLASKSSLLAKPAYNGLGAVQQVARERRAMARTG 571 VTWPLVYLASKS LAKP+YNGLGAVQQVARERRA+AR+G Sbjct 634 VTWPLVYLASKSPTLAKPSYNGLGAVQQVARERRAVARSG 673 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 107/151 (71%), Positives = 122/151 (81%), Gaps = 6/151 (3%) Query 1 VASSSAPVHPARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGS 60 +AS SAPV PAR L+VFL MLIG+YLLVF TGDK PKLGIDLQGGTRVTLTARTPDGS Sbjct 1 MASPSAPVRPARSLAVFLAMLIGVYLLVFLTGDKLAEPKLGIDLQGGTRVTLTARTPDGS 60 Query 61 APSREALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRP 120 AP+R+AL QAQQIISARVNGLGVSGSEV++DG NLVITVPG+DG+EAR LGQTARLYIRP Sbjct 61 APTRDALNQAQQIISARVNGLGVSGSEVIIDGSNLVITVPGSDGNEARTLGQTARLYIRP 120 Query 121 VLNSMPAQPAAEEPQPAPSAEPQPPGQPAAP 151 V++ + + A + + Q PG P P Sbjct 121 VISGVSVEEAKQ------AGGGQMPGLPGGP 145 >gi|342858588|ref|ZP_08715243.1| preprotein translocase subunit SecD [Mycobacterium colombiense CECT 3035] gi|342134292|gb|EGT87472.1| preprotein translocase subunit SecD [Mycobacterium colombiense CECT 3035] Length=611 Score = 579 bits (1492), Expect = 5e-163, Method: Compositional matrix adjust. Identities = 326/377 (87%), Positives = 351/377 (94%), Gaps = 2/377 (0%) Query 199 DPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDILAGNDDPKLPLVTCSTDHK 258 DPRK+LAERIA EKK RQST Q +Q +ALQFQATRC+ +DILAGNDDP PL+TCSTDHK Sbjct 235 DPRKELAERIADEKKWRQSTRQGIQFLALQFQATRCDKEDILAGNDDPAQPLITCSTDHK 294 Query 259 TAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANIWADYTAAHIGTQTAFTLD 318 AYLL PSIISGDQIQ+A++ +QRGIGYVVDLQFK AAN WAD+TAAHIGTQTAFTLD Sbjct 295 VAYLLGPSIISGDQIQDASASQNQRGIGYVVDLQFKSAAANTWADFTAAHIGTQTAFTLD 354 Query 319 SQVVSAPQIQEAIPGGRTQISGGDPPFTAATARQLANVLKYGSLPLSFEPSEAQTVSATL 378 SQVVSAP IQEAIPGGRTQISGGDPPFTAATA+QLANVLKYGSLPLSFE SEAQTVSATL Sbjct 355 SQVVSAPMIQEAIPGGRTQISGGDPPFTAATAKQLANVLKYGSLPLSFESSEAQTVSATL 414 Query 379 GLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGSMVFAILVLLGRYINYTL 438 GL+SLRAG++AGAIGL+LVL+YSLLYYRVLGLLTALSL ASG+M+FAILV+LGR INYTL Sbjct 415 GLTSLRAGLVAGAIGLILVLLYSLLYYRVLGLLTALSLGASGAMIFAILVILGRQINYTL 474 Query 439 DLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTIVSGNAVTFL 498 DLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGW RARKTIVSGNAVTFL Sbjct 475 DLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWTRARKTIVSGNAVTFL 534 Query 499 AAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSSLLAKPAYNGLGAVQ 558 AAAVLY LAIGQV+GFAFTLGLTT+LD+VVVFLVTWPLVYLASKS LAKPAYNGLGAVQ Sbjct 535 AAAVLYALAIGQVRGFAFTLGLTTVLDIVVVFLVTWPLVYLASKSPTLAKPAYNGLGAVQ 594 Query 559 QVARERRAMA--RTGRG 573 +VARERRA A +TGRG Sbjct 595 RVARERRASAQVKTGRG 611 >gi|54025661|ref|YP_119903.1| preprotein translocase subunit SecD [Nocardia farcinica IFM 10152] gi|54017169|dbj|BAD58539.1| putative protein exporter membrane protein [Nocardia farcinica IFM 10152] Length=561 Score = 573 bits (1478), Expect = 2e-161, Method: Compositional matrix adjust. Identities = 337/572 (59%), Positives = 408/572 (72%), Gaps = 20/572 (3%) Query 4 SSAPVHPARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGSAPS 63 S HP R L V+ +L IY LVFFTGD+ PKLGIDLQGGTRVTLTARTPDGS PS Sbjct 4 SQGSAHPLRLLGVYAALLAVIYALVFFTGDQSPTPKLGIDLQGGTRVTLTARTPDGSRPS 63 Query 64 REALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRPVLN 123 +++L +AQ+II RVNGLGV GSEV ++GDN+VITVPG+DG +AR L TA+LYIR Sbjct 64 QDSLRKAQEIIENRVNGLGVGGSEVAIEGDNIVITVPGDDGQQARALATTAKLYIR---- 119 Query 124 SMPAQPAAEEPQPAPSAEPQPPGQPAAPPPAQSGAPASPQPGAQPRPYPQDPAPSPNPTS 183 P Q +A+P P AP +P P A P D AP Sbjct 120 -----PVLAAQQAGAAAQPAPAPATPAPAEPAPATAPAPAPAAPEAEAPVDTAPQQR-VF 173 Query 184 PASPPPAPPAEAPATDPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDILAGN 243 PA PP + P++ I K+ RQST+ +Q A+ A C D LAGN Sbjct 174 PAQAPPT--TDDDNLTPQERAQREITAAKQTRQSTDPAVQQAAMA--ALDCSKQDPLAGN 229 Query 244 DDPKLPLVTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANIWAD 303 DDP LPLVTCS D +LL + I G +I++A + +DQ+ +VVDL+FK ++ WA Sbjct 230 DDPNLPLVTCSQDGTEVFLLDKTRIDGQEIKDAVANLDQQQSRWVVDLEFKSSGSDAWAS 289 Query 304 YTAAHIGTQTAFTLDSQVVSAPQIQEAIP--GGRTQISGGDPPFTAATARQLANVLKYGS 361 T ++ + AFTLDS+VVSAPQ+Q A P GGRTQISG FTAA+A++LAN LKYGS Sbjct 290 LTGEYLYKRVAFTLDSEVVSAPQVQ-AGPQLGGRTQISG---QFTAASAKELANTLKYGS 345 Query 362 LPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGS 421 LPLSF+ SEA+TVSATLGLSS+RAG+IAGA+GL +VL+Y L+YYR+LGLLT LSLVASG Sbjct 346 LPLSFQTSEAETVSATLGLSSMRAGLIAGAVGLAVVLLYCLVYYRMLGLLTGLSLVASGL 405 Query 422 MVFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRG 481 V+ ++VLLGR+I +TLDLAGIAGLIIGIG TADSFVVFFERIKDE+REGRSFRSAVPRG Sbjct 406 AVYGLMVLLGRWIGFTLDLAGIAGLIIGIGMTADSFVVFFERIKDEMREGRSFRSAVPRG 465 Query 482 WARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLAS 541 W RAR+TI+SGN V+F+AAAVLY LA+GQVKGFAFTLGLTTILD+VVVFLVT PLV LAS Sbjct 466 WQRARRTILSGNGVSFIAAAVLYVLAVGQVKGFAFTLGLTTILDVVVVFLVTAPLVLLAS 525 Query 542 KSSLLAKPAYNGLGAVQQVARERRAMARTGRG 573 +S+ +KP+ NGLGA+Q+VARERRA G Sbjct 526 RSAFWSKPSVNGLGAIQEVARERRAAESAAEG 557 >gi|257055540|ref|YP_003133372.1| protein-export membrane protein SecD [Saccharomonospora viridis DSM 43017] gi|256585412|gb|ACU96545.1| protein-export membrane protein SecD [Saccharomonospora viridis DSM 43017] Length=603 Score = 573 bits (1477), Expect = 3e-161, Method: Compositional matrix adjust. Identities = 303/593 (52%), Positives = 396/593 (67%), Gaps = 34/593 (5%) Query 8 VHPARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGSAPSREAL 67 + P RY + F+V++ +Y LVFFTGD PKLGIDL+GGTRVTLTARTPDGS PSRE L Sbjct 8 IRPGRYFAFFVVIVAALYSLVFFTGDGSPTPKLGIDLKGGTRVTLTARTPDGSEPSREQL 67 Query 68 AQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRPVLNSMPA 127 QA+QII RVNG+GVSG+EV++DG+N+VITVPG+ G +A+ LGQTA+L R VL ++PA Sbjct 68 QQARQIIENRVNGIGVSGAEVLLDGNNVVITVPGDQGEQAKTLGQTAKLGFRQVLAAVPA 127 Query 128 QPAAEEPQPAPSAEPQPPGQPAAPPPAQSGAPASPQPGAQPRPYPQD------------- 174 A++P+ + G+ + + Q A + Sbjct 128 AGPAQQPESGAGSGEDSDGEDGQGSESGEDGKDTEQGSADEDGAADEDSDADSADSGDTQ 187 Query 175 ------PAPSPNPTSPASPPPAPPAEAPATDPRKDLAERIAQEKKLRQS--------TNQ 220 P +P S S + ++ AE+I + KK RQ +Q Sbjct 188 GGGSTPPGSAPTQQSDESDRDDDDGDRDGRTEQEKAAEQIQEAKKWRQDPALLPTGPEDQ 247 Query 221 YMQMVALQFQATR--CESD--DILAGNDDPKLPLVTCSTDHKTAYLLAPSIISGDQIQNA 276 Q R C+ D D LAGNDDP LPLVTC+ D Y+L+P + G I NA Sbjct 248 AEAQQLQQQALARLTCDPDTLDPLAGNDDPNLPLVTCNQDGTEKYVLSPVFLEGTSISNA 307 Query 277 TSGMDQRGIGYVVDLQFKGPAANIWADYTAAHIGTQTAFTLDSQVVSAPQIQEAIPGGRT 336 ++ D +G G+VV+L F A+ WAD+TA +IG + AF LD++VVSAP I EAI GG T Sbjct 308 SAVYDTQGGGWVVNLSFDSEGADTWADFTAQNIGERAAFVLDTEVVSAPSINEAIAGGDT 367 Query 337 QISGGDPPFTAATARQLANVLKYGSLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLL 396 +ISG FT + A+ LA+VLKYGSLPLSFE S+A TVSATLG+++L+AG+IAGAIGL L Sbjct 368 RISG---QFTQSEAQNLADVLKYGSLPLSFESSDATTVSATLGMATLKAGLIAGAIGLAL 424 Query 397 VLVYSLLYYRVLGLLTALSLVASGSMVFAILVLLGRYINYTLDLAGIAGLIIGIGTTADS 456 V VY LLYYR+LG+LT LSL S +V+A+LVLLGR+I+YTLD+AG+ G I+ +G TADS Sbjct 425 VFVYCLLYYRILGVLTVLSLALSALIVYAVLVLLGRWIDYTLDIAGVVGFIVAVGVTADS 484 Query 457 FVVFFERIKDEIREGRSFRSAVPRGWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAF 516 FVV+FERIKDE+REGR+FRSAVPRGW +AR+TI++ +A+ FLAA VLY LA+G+VKGFAF Sbjct 485 FVVYFERIKDEMREGRTFRSAVPRGWVKARRTILASDAIMFLAAGVLYVLAVGEVKGFAF 544 Query 517 TLGLTTILDLVVVFLVTWPLVYLASKSSLLAKPAYNGLGAVQQVARERRAMAR 569 TLG++T+LDL+VVFLVT PLV + S+S L+ P +GLGAVQ++ RRA R Sbjct 545 TLGMSTVLDLIVVFLVTHPLVVVVSRSKKLSSPRLSGLGAVQRIGDSRRAAVR 597 >gi|226366284|ref|YP_002784067.1| preprotein translocase subunit SecD [Rhodococcus opacus B4] gi|226244774|dbj|BAH55122.1| protein-export membrane protein SecD [Rhodococcus opacus B4] Length=556 Score = 572 bits (1475), Expect = 5e-161, Method: Compositional matrix adjust. Identities = 349/562 (63%), Positives = 414/562 (74%), Gaps = 24/562 (4%) Query 1 VASSSAPVHPARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGS 60 +A S+ VHP RYL+VF V++ +Y LVFFTGDK PKLGIDLQGGTRVTLTARTPDGS Sbjct 1 MAPSTGSVHPVRYLTVFAVLVAVLYALVFFTGDKSATPKLGIDLQGGTRVTLTARTPDGS 60 Query 61 APSREALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRP 120 P+ ++L QAQ+II RVNGLGVSGSEVV+DGDNLVITVPG+D ++AR+LGQTARLY+RP Sbjct 61 KPTPDSLRQAQEIIETRVNGLGVSGSEVVIDGDNLVITVPGDDSAQARSLGQTARLYVRP 120 Query 121 VLNSMPAQPAAEEPQPAPSAEPQPPGQPAAPPPAQSGAPASPQPGAQPRPYP-QDPAPSP 179 V S A A + A Q P P P Q RP+P QDP+ SP Sbjct 121 VQTSQAAAAAGTQAPAAGETPAQAPAGTETPAP-------------QNRPFPAQDPSTSP 167 Query 180 NPTSPASPPPAPPAEAPATDPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDI 239 P A PA+ T+ + E A RQST+ +Q A+ C D Sbjct 168 EPAPTAE---PAPADESGTETAQAADEIAAARAT-RQSTDPAVQQQAMA--TLDCSVPDP 221 Query 240 LAGNDDPKLPLVTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAAN 299 L GNDDP LPLV CSTD + YLL P+II G +I +ATSG + + + V L FK +N Sbjct 222 LRGNDDPALPLVACSTDGQAVYLLDPAIIDGQEIADATSGYNSQQSRHEVSLTFKSEGSN 281 Query 300 IWADYTAAHIGTQTAFTLDSQVVSAPQIQEAIPGGR-TQISGGDPPFTAATARQLANVLK 358 WA +T+ +IG Q AFTLDS+VVSAP +Q A P G T I+G FTA +A++LAN LK Sbjct 282 TWATFTSQNIGKQAAFTLDSKVVSAPVVQGATPAGSSTSITGS---FTADSAKELANTLK 338 Query 359 YGSLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVA 418 YGSLPLSF SEA+TVSATLGL+SL AG+IAG +GL+LVL+Y LLYYR+LG+LTALSLV Sbjct 339 YGSLPLSFAASEAETVSATLGLASLEAGLIAGLVGLVLVLLYCLLYYRMLGVLTALSLVL 398 Query 419 SGSMVFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAV 478 SG MV+AI+VLLGRYIN+TLDLAGIAGLIIGIG TADSFVVFFERIKDE+REGRSFRSAV Sbjct 399 SGVMVYAIMVLLGRYINFTLDLAGIAGLIIGIGMTADSFVVFFERIKDEMREGRSFRSAV 458 Query 479 PRGWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVY 538 PRGWARAR+TI+SGNAV+F+AAAVLY LA+GQV+GFAFTLGLTTILD+VVVFLVTWPLV+ Sbjct 459 PRGWARARRTILSGNAVSFIAAAVLYVLAVGQVRGFAFTLGLTTILDVVVVFLVTWPLVH 518 Query 539 LASKSSLLAKPAYNGLGAVQQV 560 LASKS ++P NGLGAVQQ+ Sbjct 519 LASKSPFWSRPGVNGLGAVQQI 540 >gi|262202234|ref|YP_003273442.1| protein-export membrane protein SecD [Gordonia bronchialis DSM 43247] gi|262085581|gb|ACY21549.1| protein-export membrane protein SecD [Gordonia bronchialis DSM 43247] Length=550 Score = 568 bits (1463), Expect = 1e-159, Method: Compositional matrix adjust. Identities = 326/560 (59%), Positives = 392/560 (70%), Gaps = 49/560 (8%) Query 5 SAPVHPARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGSAPSR 64 S + P + L+VFL +L +Y L+FFTG K PKLGIDLQGGTRVTLTART +G PSR Sbjct 20 SREIPPWQPLAVFLALLAVVYGLIFFTGAKTLEPKLGIDLQGGTRVTLTARTENGQQPSR 79 Query 65 EALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRPVLNS 124 E L +A+QII RVNGLGV GSEVV++GDNLVITVPG DGS+AR LGQTARLY+RPV+ Sbjct 80 EQLDRAKQIIEQRVNGLGVGGSEVVINGDNLVITVPGKDGSQARTLGQTARLYVRPVIG- 138 Query 125 MPAQPAAEEPQPAPSAEPQPPGQPAAPPPAQSGAPASPQPGAQPRPYPQDPAPSPNPTSP 184 EPQ A P+P Q APPP Q+ + Q A+ R Q PA + Sbjct 139 --------EPQLARPQAPKPEDQ--APPPGQTQSEQVQQAIAEQRKLRQAPANAD----- 183 Query 185 ASPPPAPPAEAPATDPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDILAGND 244 Q T +Q Q SD ++ GND Sbjct 184 -------------------------------QQTIARLQAQMAQMNCAEGTSDPLM-GND 211 Query 245 DPKLPLVTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANIWADY 304 P LV CS D YLL P II G I+ A++ D + ++V L FKG AA+ W Y Sbjct 212 LPDQYLVACSQDGSQVYLLGPEIIDGRDIKEASAETDSQTGEWIVSLTFKGDAASFWPQY 271 Query 305 TAAHIGTQTAFTLDSQVVSAPQIQEAIPGGRTQISGGD-PPFTAATARQLANVLKYGSLP 363 TA+H+GT TAFTLD++VVSAP I +AIPGG T+ISGG PFT A+A LANVLKYGSLP Sbjct 272 TASHVGTATAFTLDTRVVSAPVINQAIPGGSTRISGGSADPFTEASAGDLANVLKYGSLP 331 Query 364 LSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGSMV 423 LSF+ S A+TVSATLGLSSLRAG++AGAIGLL VL+Y+L YYR+LG+LT SLV +G MV Sbjct 332 LSFDASNAETVSATLGLSSLRAGLLAGAIGLLAVLIYALAYYRMLGILTFASLVLAGLMV 391 Query 424 FAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWA 483 + I+VLLGR+I +TLDLAGIAGLIIGIG TADSFVV+FERIKDE+REGRSFRSAVPRGWA Sbjct 392 YGIMVLLGRWIGFTLDLAGIAGLIIGIGMTADSFVVYFERIKDEMREGRSFRSAVPRGWA 451 Query 484 RARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKS 543 AR+TI SGNAV+F+AAAV+Y LA+G+V+GFAFTLGLTTILD+VVVFLVT PLV AS+S Sbjct 452 SARRTIWSGNAVSFIAAAVIYILAVGEVRGFAFTLGLTTILDVVVVFLVTHPLVVYASRS 511 Query 544 SLLAKPAYNGLGAVQQVARE 563 + L++P+ NGLGAV +VAR+ Sbjct 512 TFLSRPSVNGLGAVAEVARQ 531 >gi|312139497|ref|YP_004006833.1| preprotein translocase subunit secd [Rhodococcus equi 103S] gi|311888836|emb|CBH48148.1| putative preprotein translocase subunit SecD [Rhodococcus equi 103S] Length=551 Score = 564 bits (1453), Expect = 2e-158, Method: Compositional matrix adjust. Identities = 354/559 (64%), Positives = 419/559 (75%), Gaps = 18/559 (3%) Query 12 RYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGSAPSREALAQAQ 71 R L+VF ++ +Y LVFFTGDK P+LGIDLQGGTRVTLTARTPDGS PS+++L QAQ Sbjct 2 RALAVFTALVAALYALVFFTGDKSPTPELGIDLQGGTRVTLTARTPDGSTPSQDSLRQAQ 61 Query 72 QIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRPVLNSMPAQPAA 131 QII RVNGLGVSGSEVV+DGDNLVITVPG+D S+AR+LGQTARLYIRPV+ S A Sbjct 62 QIIETRVNGLGVSGSEVVIDGDNLVITVPGDDSSQARSLGQTARLYIRPVVGSQAAAAPG 121 Query 132 EEPQPAPSAEPQPPGQPAAPPPAQSGAPASPQPGAQPRPYP-QDPAPSPNPTSPASPPPA 190 +P PA A PA + + P Q RP+P QDP P+ +P PA Sbjct 122 AQPAPATQA---------PTTPAPAPTEPAATPDVQERPFPAQDPTEPAEPSPSPAPGPA 172 Query 191 PPAEAPATDPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDILAGNDDPKLPL 250 P P + A IA+ K+ RQS + +Q A+ C + D L GNDDP LPL Sbjct 173 PGEPVPGSPEAA--AAEIAKAKETRQSEDPAVQQQAMA--TLDCSAPDPLQGNDDPNLPL 228 Query 251 VTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANIWADYTAAHIG 310 V CSTD T YLLAPSII G +I +A+SG + + Y V L FK ++ WA +TAA+IG Sbjct 229 VACSTDGTTVYLLAPSIIDGQEISDASSGYNTQQSRYEVSLSFKSSGSSTWAQFTAANIG 288 Query 311 TQTAFTLDSQVVSAPQIQEAIPGGR-TQISGGDPPFTAATARQLANVLKYGSLPLSFEPS 369 Q AFTLDS+VVSAP +Q A P G T I+G F A++LAN LKYGSLPLSF+ S Sbjct 289 KQAAFTLDSKVVSAPVVQGATPAGSSTSITG---QFNQTQAQELANTLKYGSLPLSFQAS 345 Query 370 EAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGSMVFAILVL 429 EA+TVSATLGL+SL AG+IAGA+GL+LVLVY L+YYR+LG+LTALSLV SG MV+A++VL Sbjct 346 EAETVSATLGLASLEAGLIAGAVGLVLVLVYCLVYYRMLGVLTALSLVLSGLMVYAVMVL 405 Query 430 LGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTI 489 LGRYI +TLDLAGIAGLIIGIG TADSFVVFFERIKDE+REGRSFRSAVPRGWARAR+TI Sbjct 406 LGRYIGFTLDLAGIAGLIIGIGMTADSFVVFFERIKDEMREGRSFRSAVPRGWARARRTI 465 Query 490 VSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSSLLAKP 549 +SGNAV+F+AAAVLY LA+GQV+GFAFTLGLTTILD+VVVFLVTWPLVY+ASKS +KP Sbjct 466 LSGNAVSFIAAAVLYVLAVGQVRGFAFTLGLTTILDVVVVFLVTWPLVYMASKSRFWSKP 525 Query 550 AYNGLGAVQQVARERRAMA 568 NGLGAVQQVARER+ +A Sbjct 526 GVNGLGAVQQVARERKLVA 544 >gi|343924324|ref|ZP_08763875.1| protein-export membrane protein SecD [Gordonia alkanivorans NBRC 16433] gi|343765758|dbj|GAA10801.1| protein-export membrane protein SecD [Gordonia alkanivorans NBRC 16433] Length=564 Score = 563 bits (1451), Expect = 3e-158, Method: Compositional matrix adjust. Identities = 328/574 (58%), Positives = 402/574 (71%), Gaps = 63/574 (10%) Query 5 SAPVHPARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGSAPSR 64 S + P R L FL +L +Y L++FTG + PKLGIDLQGGTRVTLTART DG P+R Sbjct 21 SREIPPWRPLVAFLALLAVVYGLIYFTGPRTLEPKLGIDLQGGTRVTLTARTEDGKEPTR 80 Query 65 EALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRPVLNS 124 + L QA+QII RVNGLGVSGSEVVV G+NLVITVPG DG++A++L QTARLY+RPV+ Sbjct 81 QQLDQAKQIIEQRVNGLGVSGSEVVVTGNNLVITVPGEDGAQAKSLSQTARLYVRPVVG- 139 Query 125 MPAQPAAEEPQPAPSAEPQPPGQPAAPPPAQSGAPASPQPGAQPRPYPQDPAPSPNPTSP 184 A +A PQPP +P QD Sbjct 140 ------------ATAATPQPP-----------------------KPENQDEDQGN----- 159 Query 185 ASPPPAPPAEAPATDPRKDLAERIAQEKKLRQS--TNQYMQMVALQFQATRCE----SDD 238 A P E A IA+++K+RQ+ + Q+V LQ Q + + ++D Sbjct 160 -----AMPTEVAAA--------AIAEQRKIRQAPGDAKQEQLVPLQEQMAKMDCSPTAND 206 Query 239 ILAGNDDPKLPLVTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAA 298 L GND P LV CSTD K YLL P II G I++A++G D + +VV L+FKG AA Sbjct 207 PLRGNDLPDQYLVACSTDGKEVYLLGPQIIDGRDIKDASAGTDPQTGEWVVTLEFKGKAA 266 Query 299 NIWADYTAAHI--GTQTAFTLDSQVVSAPQIQEAIPGGRTQISGGD-PPFTAATARQLAN 355 + W YTA TQTAFTLDS VVSAP I E IPGG+T+ISG PFT ++ +LAN Sbjct 267 DFWPKYTAQEAPNRTQTAFTLDSAVVSAPAINEPIPGGQTRISGSSADPFTEKSSNELAN 326 Query 356 VLKYGSLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALS 415 VLKYGSLPLSF S+A+TVSATLGLSSL+AG++AGAIGL+ VL+Y+L YYR+LG+LT LS Sbjct 327 VLKYGSLPLSFNASDAETVSATLGLSSLKAGLLAGAIGLVAVLIYALAYYRMLGILTMLS 386 Query 416 LVASGSMVFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFR 475 LV +G+MV+ I+VLLGR+I +TLDLAGIAGLIIGIG TADSFVV+FERIKDE+REGRSFR Sbjct 387 LVLAGAMVYGIIVLLGRWIGFTLDLAGIAGLIIGIGMTADSFVVYFERIKDEMREGRSFR 446 Query 476 SAVPRGWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWP 535 SAVPRGWA AR+TI SGNAV+F+AA+V+Y LAIG+V+GFAFTLGLTTILD++VVFLVT P Sbjct 447 SAVPRGWASARRTIWSGNAVSFIAASVIYILAIGEVRGFAFTLGLTTILDVMVVFLVTHP 506 Query 536 LVYLASKSSLLAKPAYNGLGAVQQVARERRAMAR 569 LV AS+SS L+KP+ NGLGAV +VARER+ AR Sbjct 507 LVVYASRSSFLSKPSVNGLGAVSEVARERKVAAR 540 >gi|325672613|ref|ZP_08152309.1| protein-export membrane protein SecD [Rhodococcus equi ATCC 33707] gi|325556490|gb|EGD26156.1| protein-export membrane protein SecD [Rhodococcus equi ATCC 33707] Length=551 Score = 561 bits (1446), Expect = 1e-157, Method: Compositional matrix adjust. Identities = 354/559 (64%), Positives = 419/559 (75%), Gaps = 18/559 (3%) Query 12 RYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGSAPSREALAQAQ 71 R L+VF ++ +Y LVFFTGDK P+LGIDLQGGTRVTLTARTPDGS PS+++L QAQ Sbjct 2 RALAVFTALVAALYALVFFTGDKSPTPELGIDLQGGTRVTLTARTPDGSTPSQDSLRQAQ 61 Query 72 QIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRPVLNSMPAQPAA 131 QII RVNGLGVSGSEVV+DGDNLVITVPG+D S+AR+LGQTARLYIRPV+ S A Sbjct 62 QIIETRVNGLGVSGSEVVIDGDNLVITVPGDDSSQARSLGQTARLYIRPVVGSQAAAAPG 121 Query 132 EEPQPAPSAEPQPPGQPAAPPPAQSGAPASPQPGAQPRPYP-QDPAPSPNPTSPASPPPA 190 +P PA A PA + + P Q RP+P QDP P+ +P PA Sbjct 122 AQPAPATQA---------PTTPAPAPTEPAATPDVQERPFPAQDPTEPAEPSPSPAPAPA 172 Query 191 PPAEAPATDPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDILAGNDDPKLPL 250 P P + A IA+ K+ RQS + +Q A+ C + D L GNDDP LPL Sbjct 173 PGEPVPGSPEAA--AAEIAKAKETRQSEDPAVQQQAMA--TLDCSAPDPLQGNDDPNLPL 228 Query 251 VTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANIWADYTAAHIG 310 V CSTD T YLLAPSII G +I +A+SG + + Y V L FK ++ WA +TAA+IG Sbjct 229 VACSTDGTTVYLLAPSIIDGQEISDASSGYNTQQSRYEVSLSFKSSGSSTWAQFTAANIG 288 Query 311 TQTAFTLDSQVVSAPQIQEAIPGGR-TQISGGDPPFTAATARQLANVLKYGSLPLSFEPS 369 Q AFTLDS+VVSAP +Q A P G T I+G F A++LAN LKYGSLPLSF+ S Sbjct 289 KQAAFTLDSKVVSAPVVQGATPAGSSTSITG---QFNQTQAQELANTLKYGSLPLSFQAS 345 Query 370 EAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGSMVFAILVL 429 EA+TVSATLGL+SL AG+IAGA+GL+LVLVY L+YYR+LG+LTALSLV SG MV+A++VL Sbjct 346 EAETVSATLGLASLEAGLIAGAVGLVLVLVYCLVYYRMLGVLTALSLVLSGLMVYAVMVL 405 Query 430 LGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTI 489 LGRYI +TLDLAGIAGLIIGIG TADSFVVFFERIKDE+REGRSFRSAVPRGWARAR+TI Sbjct 406 LGRYIGFTLDLAGIAGLIIGIGMTADSFVVFFERIKDEMREGRSFRSAVPRGWARARRTI 465 Query 490 VSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSSLLAKP 549 +SGNAV+F+AAAVLY LA+GQV+GFAFTLGLTTILD+VVVFLVTWPLVY+ASKS +KP Sbjct 466 LSGNAVSFIAAAVLYVLAVGQVRGFAFTLGLTTILDVVVVFLVTWPLVYMASKSRFWSKP 525 Query 550 AYNGLGAVQQVARERRAMA 568 NGLGAVQQVARER+ +A Sbjct 526 GVNGLGAVQQVARERKLVA 544 >gi|120403568|ref|YP_953397.1| preprotein translocase subunit SecD [Mycobacterium vanbaalenii PYR-1] gi|119956386|gb|ABM13391.1| protein-export membrane protein SecD [Mycobacterium vanbaalenii PYR-1] Length=599 Score = 546 bits (1406), Expect = 5e-153, Method: Compositional matrix adjust. Identities = 285/357 (80%), Positives = 318/357 (90%), Gaps = 3/357 (0%) Query 204 LAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDILAGNDDPKLPLVTCSTDHKTAYLL 263 LA RI EK+LRQST Q +Q++ALQFQATRC +D+LAGNDDP LPLVTCS D YLL Sbjct 232 LATRIQDEKRLRQSTEQAIQILALQFQATRCGQEDVLAGNDDPNLPLVTCSQDGNEVYLL 291 Query 264 APSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANIWADYTAAHIGTQTAFTLDSQVVS 323 SIISG+QI NA+SG++Q+ YVVD++FK AA +WAD+TAA++GTQTAF LDSQVVS Sbjct 292 DKSIISGEQIANASSGLNQQAGEYVVDVEFKSDAAKVWADFTAANVGTQTAFVLDSQVVS 351 Query 324 APQIQEAIPGGRTQISGGDPPFTAATARQLANVLKYGSLPLSFEPSEAQTVSATLGLSSL 383 AP IQEAIPGGRTQI+G FT TAR+LANVLKYGSLPLSFE SEA+TVSATLGLSSL Sbjct 352 APVIQEAIPGGRTQITG---QFTQTTARELANVLKYGSLPLSFESSEAETVSATLGLSSL 408 Query 384 RAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGSMVFAILVLLGRYINYTLDLAGI 443 RAG+IAG +GL+ VL+YSLLYYRVLG+L ALSL ASG+MVFAILVLLGRYI+YTLDLAGI Sbjct 409 RAGLIAGVVGLVAVLLYSLLYYRVLGVLIALSLTASGAMVFAILVLLGRYISYTLDLAGI 468 Query 444 AGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTIVSGNAVTFLAAAVL 503 AGLIIGIG TADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTIVSGNAVT LAAAVL Sbjct 469 AGLIIGIGMTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTIVSGNAVTLLAAAVL 528 Query 504 YFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSSLLAKPAYNGLGAVQQV 560 YFLA+GQVKGFAFTLGLTTILD+VVVFLVTWPLVY+ASKS+L AKP+ NGLGAVQQ+ Sbjct 529 YFLAVGQVKGFAFTLGLTTILDIVVVFLVTWPLVYMASKSTLWAKPSLNGLGAVQQI 585 >gi|108799243|ref|YP_639440.1| preprotein translocase subunit SecD [Mycobacterium sp. MCS] gi|119868359|ref|YP_938311.1| preprotein translocase subunit SecD [Mycobacterium sp. KMS] gi|126434901|ref|YP_001070592.1| preprotein translocase subunit SecD [Mycobacterium sp. JLS] gi|108769662|gb|ABG08384.1| protein-export membrane protein SecD [Mycobacterium sp. MCS] gi|119694448|gb|ABL91521.1| protein-export membrane protein SecD [Mycobacterium sp. KMS] gi|126234701|gb|ABN98101.1| protein-export membrane protein SecD [Mycobacterium sp. JLS] Length=598 Score = 539 bits (1389), Expect = 5e-151, Method: Compositional matrix adjust. Identities = 292/362 (81%), Positives = 330/362 (92%), Gaps = 3/362 (0%) Query 199 DPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDILAGNDDPKLPLVTCSTDHK 258 + R DLA+RIA EK+LRQST+ +Q++ALQFQATRC DD+LAGNDDP LPL+TCSTD + Sbjct 225 NKRADLAQRIADEKQLRQSTDPSIQLLALQFQATRCGEDDVLAGNDDPNLPLITCSTDGQ 284 Query 259 TAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANIWADYTAAHIGTQTAFTLD 318 T YLL SIISG+QI NA+SG+D + Y+VDL+FK AA IWAD+TAA++GTQTAFTLD Sbjct 285 TVYLLNKSIISGEQIANASSGLDNQRGEYIVDLEFKSDAAKIWADFTAANVGTQTAFTLD 344 Query 319 SQVVSAPQIQEAIPGGRTQISGGDPPFTAATARQLANVLKYGSLPLSFEPSEAQTVSATL 378 SQVVSAP+IQEAIPGGRTQI+G FTA +AR+LANVLKYGSLPLSFE SEA+TVSATL Sbjct 345 SQVVSAPEIQEAIPGGRTQING---RFTADSARELANVLKYGSLPLSFESSEAETVSATL 401 Query 379 GLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGSMVFAILVLLGRYINYTL 438 GL+SL+AG+IAGA+GL VL+YSLLYYR+LG+L ALSLVASG+MVFAILVLLGRYINYTL Sbjct 402 GLASLKAGLIAGAVGLAAVLLYSLLYYRLLGVLIALSLVASGAMVFAILVLLGRYINYTL 461 Query 439 DLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTIVSGNAVTFL 498 DLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTIVSGNAVTFL Sbjct 462 DLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTIVSGNAVTFL 521 Query 499 AAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSSLLAKPAYNGLGAVQ 558 AAAVLYFLA+GQVKGFAFTLGLTTILD+VVVFLVTWPLVYLASK++ AKP +NGLGAVQ Sbjct 522 AAAVLYFLAVGQVKGFAFTLGLTTILDVVVVFLVTWPLVYLASKTTWAAKPKFNGLGAVQ 581 Query 559 QV 560 Q+ Sbjct 582 QI 583 >gi|296139651|ref|YP_003646894.1| protein-export membrane protein SecD [Tsukamurella paurometabola DSM 20162] gi|296027785|gb|ADG78555.1| protein-export membrane protein SecD [Tsukamurella paurometabola DSM 20162] Length=538 Score = 526 bits (1356), Expect = 3e-147, Method: Compositional matrix adjust. Identities = 317/574 (56%), Positives = 383/574 (67%), Gaps = 76/574 (13%) Query 9 HPARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGSAPSREA-- 66 P + L+ F V+LI ++ L+FFTGDK PKLGIDLQGGT VTL A PDG+ P + Sbjct 13 DPWKPLAFFGVLLIAVFGLIFFTGDKKPEPKLGIDLQGGTSVTLQATRPDGTVPDSNSPE 72 Query 67 LAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRPVLNSMP 126 L QA+ II+ RVNGLGV+GSEV ++G NLVITVPG DG +AR LGQTARL +RPVL Sbjct 73 LEQARDIINQRVNGLGVAGSEVKINGSNLVITVPGEDGDQARTLGQTARLLVRPVL---- 128 Query 127 AQPAAEEPQPAPSAEPQPPGQPAAPPPAQSGAPASPQPGAQPRPYPQDPAPSPNPTSPAS 186 S PA+PQP A P+P+ T+P + Sbjct 129 -----------------------------SAVPATPQPNA----------PAPDLTNPDT 149 Query 187 PPPAPPAEAPATDPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDILAGNDDP 246 A + K RQST+ Q A C++ D LAGNDDP Sbjct 150 AKKA-----------------LLDAKAARQSTDPAAQQKAAS--QLNCDATDPLAGNDDP 190 Query 247 KLPLVTC---STDHKT-----AYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAA 298 KLPLVTC D K Y LAPSII G I+NA+SG+ Q YVV L+F G AA Sbjct 191 KLPLVTCGKLENDPKNPQPRMVYTLAPSIIDGQSIKNASSGIPQNQAQYVVTLEFTGDAA 250 Query 299 NIWADYTAAHIGTQTAFTLDSQVVSAPQIQEAIPGGRTQISGGDPPFTAATARQLANVLK 358 WADYT+ + G Q AF LDSQV++APQI E I GG+TQISG F +A LANVLK Sbjct 251 KAWADYTSNNRGKQAAFVLDSQVITAPQINEPITGGQTQISGS---FNQQSAADLANVLK 307 Query 359 YGSLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVA 418 YGSLPLSF+ AQTVSATLG SLRAG+IAG IGL+LVL+Y+L YYR LG+L ALSLV Sbjct 308 YGSLPLSFKAGTAQTVSATLGFDSLRAGVIAGLIGLVLVLIYALAYYRALGVLVALSLVL 367 Query 419 SGSMVFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAV 478 S ++++ +LVLLGR+I Y+LDL+GIAG+IIGIG TADSFVV+FERIKDEIR+GRSFRSAV Sbjct 368 SIALLYGLLVLLGRWIGYSLDLSGIAGIIIGIGMTADSFVVYFERIKDEIRDGRSFRSAV 427 Query 479 PRGWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVY 538 PRGWA AR+TI +GNAV+ L+A VLY LA+G V+GFAFTLGL+T+LD+V+VFLVT PLV Sbjct 428 PRGWASARRTIWTGNAVSLLSAVVLYILAVGDVRGFAFTLGLSTVLDVVIVFLVTHPLVV 487 Query 539 LASKSSLLAKPAYNGLGAVQQVARE-RRAMARTG 571 LAS++ AKP+ NGLGAV + RE RRA+A TG Sbjct 488 LASRTDFFAKPSMNGLGAVAAIGRERRRAVANTG 521 >gi|296393863|ref|YP_003658747.1| protein-export membrane protein SecD [Segniliparus rotundus DSM 44985] gi|296181010|gb|ADG97916.1| protein-export membrane protein SecD [Segniliparus rotundus DSM 44985] Length=555 Score = 525 bits (1351), Expect = 1e-146, Method: Compositional matrix adjust. Identities = 320/555 (58%), Positives = 384/555 (70%), Gaps = 23/555 (4%) Query 8 VHPARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGSAPSREAL 67 + P +YL VF+V + G Y LVFFTGDK P LGIDLQ GTRVTLTARTPDG P + +L Sbjct 8 MRPLQYLLVFVVFVAGSYSLVFFTGDKKKIPHLGIDLQSGTRVTLTARTPDGKDPDQSSL 67 Query 68 AQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRPVL-NSMP 126 A++II RVNGLGVSGSEVVV G+NLVITVPG +GS+AR LGQTARLYIRPV N++ Sbjct 68 NLAKEIIEKRVNGLGVSGSEVVVQGNNLVITVPGEEGSQARTLGQTARLYIRPVAKNAVN 127 Query 127 AQPAAEEPQPAPSAEPQPPGQPAAPPPAQSGAPASPQPGAQPRPYPQDPA-----PSPNP 181 Q + Q +P+ +PP AP G PA P + SP+ Sbjct 128 GQATVWDKQNSPNMF-EPPPPAPAPAAGPDGQPAPADPNVSAAQAAEIQQARAIRQSPDV 186 Query 182 TSPASPPPAPPAEAPA-TDPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDIL 240 SP A A TDP + A +I ++K + ++ C D L Sbjct 187 IVNISPEEIQNIRAMAVTDP--EAAAKIVEQK---------FGPLDKAVKSLDCGKPDPL 235 Query 241 AGNDDPKLPLVTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANI 300 GNDDPKLPLVTCS D ++L P+II G +I A + MD + +VV++ FK I Sbjct 236 RGNDDPKLPLVTCSQDGTEKFVLEPAIIDGQEISQAGAQMDNQAGAWVVNVSFKPHGQEI 295 Query 301 WADYTAAHIGTQTAFTLDSQVVSAPQIQEAIPGGRTQISGGDPPFTAATARQLANVLKYG 360 W+ YTA H+GTQTA TLDS VVS P IQ I G TQISG FTA +A++LANVL+YG Sbjct 296 WSKYTADHVGTQTAITLDSVVVSHPVIQGVI-NGSTQISGN---FTATSAKELANVLQYG 351 Query 361 SLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASG 420 SLPLSF SEAQT+SATLGL+SLRAG+IAGA+GL+LVL+YSL YYR LG L LSL+ SG Sbjct 352 SLPLSFSSSEAQTISATLGLASLRAGLIAGAVGLVLVLLYSLFYYRALGFLALLSLLLSG 411 Query 421 SMVFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPR 480 +AI+VLLGR+I +TLDLAGIAG IIGIG TADSFVV+FERIKDE++EGRSFRSAVPR Sbjct 412 VANYAIVVLLGRWIGFTLDLAGIAGFIIGIGMTADSFVVYFERIKDEVQEGRSFRSAVPR 471 Query 481 GWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLA 540 W RAR+TI+SGNAVTF+AAAVLY LAIG+V+GFAFTLGLTTI+DLVVVFLVT PLV+ A Sbjct 472 AWERARRTILSGNAVTFIAAAVLYILAIGEVRGFAFTLGLTTIMDLVVVFLVTHPLVHAA 531 Query 541 SKSSLLAKPAYNGLG 555 S + AKP+ GLG Sbjct 532 STRAWWAKPSRTGLG 546 >gi|315444730|ref|YP_004077609.1| protein-export membrane protein SecD [Mycobacterium sp. Spyr1] gi|315263033|gb|ADT99774.1| protein-export membrane protein SecD [Mycobacterium sp. Spyr1] Length=610 Score = 524 bits (1350), Expect = 2e-146, Method: Compositional matrix adjust. Identities = 276/364 (76%), Positives = 316/364 (87%), Gaps = 3/364 (0%) Query 197 ATDPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDILAGNDDPKLPLVTCSTD 256 A D LA++I QEK RQS++Q +Q++A+Q QA++C +D+LAGNDDP LPL+TCS D Sbjct 236 ADDENLSLADQIKQEKLRRQSSDQMIQILAMQLQASQCGQEDVLAGNDDPNLPLITCSQD 295 Query 257 HKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANIWADYTAAHIGTQTAFT 316 T YLL SII+G++I NATSG++Q+ YVVDL+FK + WA++TAA++G QTAF Sbjct 296 GTTVYLLDKSIIAGEEIANATSGLNQQAGEYVVDLEFKDQGSKTWAEFTAANVGVQTAFV 355 Query 317 LDSQVVSAPQIQEAIPGGRTQISGGDPPFTAATARQLANVLKYGSLPLSFEPSEAQTVSA 376 LDS+VVSAP I E IPGG+TQI+G FT TAR+LANVLKYGSLPLSFE SEA+TVSA Sbjct 356 LDSKVVSAPVINEPIPGGKTQITG---QFTQDTARELANVLKYGSLPLSFESSEAETVSA 412 Query 377 TLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGSMVFAILVLLGRYINY 436 TLGLSSLRAG+IAGA+GL VL+YSLLYYR LG+L ALSLVASG+MVFAILVLLGRYINY Sbjct 413 TLGLSSLRAGLIAGAVGLAAVLLYSLLYYRALGVLIALSLVASGAMVFAILVLLGRYINY 472 Query 437 TLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTIVSGNAVT 496 TLDLAGIAGLIIGIG TADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTI+SGNAVT Sbjct 473 TLDLAGIAGLIIGIGMTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTILSGNAVT 532 Query 497 FLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSSLLAKPAYNGLGA 556 FLAAAVLYFLA+GQVKGFAFTLGLTTILD+VVVFLVTWPLVYLASKS L AKP+ NGLGA Sbjct 533 FLAAAVLYFLAVGQVKGFAFTLGLTTILDVVVVFLVTWPLVYLASKSPLWAKPSLNGLGA 592 Query 557 VQQV 560 VQQ+ Sbjct 593 VQQI 596 >gi|145224398|ref|YP_001135076.1| preprotein translocase subunit SecD [Mycobacterium gilvum PYR-GCK] gi|145216884|gb|ABP46288.1| protein-export membrane protein SecD [Mycobacterium gilvum PYR-GCK] Length=617 Score = 524 bits (1349), Expect = 2e-146, Method: Compositional matrix adjust. Identities = 276/364 (76%), Positives = 316/364 (87%), Gaps = 3/364 (0%) Query 197 ATDPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDILAGNDDPKLPLVTCSTD 256 A D LA++I QEK RQS++Q +Q++A+Q QA++C +D+LAGNDDP LPL+TCS D Sbjct 243 ADDENLSLADQIKQEKLRRQSSDQMIQILAMQLQASQCGQEDVLAGNDDPNLPLITCSQD 302 Query 257 HKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANIWADYTAAHIGTQTAFT 316 T YLL SII+G++I NATSG++Q+ YVVDL+FK + WA++TAA++G QTAF Sbjct 303 GTTVYLLDKSIIAGEEIANATSGLNQQAGEYVVDLEFKDQGSKTWAEFTAANVGVQTAFV 362 Query 317 LDSQVVSAPQIQEAIPGGRTQISGGDPPFTAATARQLANVLKYGSLPLSFEPSEAQTVSA 376 LDS+VVSAP I E IPGG+TQI+G FT TAR+LANVLKYGSLPLSFE SEA+TVSA Sbjct 363 LDSKVVSAPVINEPIPGGKTQITG---QFTQDTARELANVLKYGSLPLSFESSEAETVSA 419 Query 377 TLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGSMVFAILVLLGRYINY 436 TLGLSSLRAG+IAGA+GL VL+YSLLYYR LG+L ALSLVASG+MVFAILVLLGRYINY Sbjct 420 TLGLSSLRAGLIAGAVGLAAVLLYSLLYYRALGVLIALSLVASGAMVFAILVLLGRYINY 479 Query 437 TLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTIVSGNAVT 496 TLDLAGIAGLIIGIG TADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTI+SGNAVT Sbjct 480 TLDLAGIAGLIIGIGMTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTILSGNAVT 539 Query 497 FLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSSLLAKPAYNGLGA 556 FLAAAVLYFLA+GQVKGFAFTLGLTTILD+VVVFLVTWPLVYLASKS L AKP+ NGLGA Sbjct 540 FLAAAVLYFLAVGQVKGFAFTLGLTTILDVVVVFLVTWPLVYLASKSPLWAKPSLNGLGA 599 Query 557 VQQV 560 VQQ+ Sbjct 600 VQQI 603 >gi|336461528|gb|EGO40396.1| protein-export membrane protein, SecD/SecF family/protein-export membrane protein SecD [Mycobacterium avium subsp. paratuberculosis S397] Length=326 Score = 521 bits (1342), Expect = 1e-145, Method: Compositional matrix adjust. Identities = 291/326 (90%), Positives = 309/326 (95%), Gaps = 2/326 (0%) Query 250 LVTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANIWADYTAAHI 309 ++TCSTDHK AYLL PSIISGDQI++A++ +QRGIG+VVDLQFK AAN WAD+TAAHI Sbjct 1 MITCSTDHKVAYLLGPSIISGDQIKDASASQNQRGIGFVVDLQFKPAAANTWADFTAAHI 60 Query 310 GTQTAFTLDSQVVSAPQIQEAIPGGRTQISGGDPPFTAATARQLANVLKYGSLPLSFEPS 369 GTQTAFTLDSQVVSAP IQEAIPGGRTQISGGDPPFTAATA+QLANVLKYGSLPLSF+ S Sbjct 61 GTQTAFTLDSQVVSAPMIQEAIPGGRTQISGGDPPFTAATAKQLANVLKYGSLPLSFQSS 120 Query 370 EAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGSMVFAILVL 429 EAQTVSATLGL+SLRAG+IAGAIGLLLVL+YSLLYYRVLGLLTALSL ASG+MVFAIL+L Sbjct 121 EAQTVSATLGLTSLRAGLIAGAIGLLLVLLYSLLYYRVLGLLTALSLAASGAMVFAILIL 180 Query 430 LGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTI 489 LGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGR+FRSAVPRGW RARKTI Sbjct 181 LGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRTFRSAVPRGWTRARKTI 240 Query 490 VSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSSLLAKP 549 VSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKS LAKP Sbjct 241 VSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSPTLAKP 300 Query 550 AYNGLGAVQQVARERRAMAR--TGRG 573 AYNGLGAVQQVARERRA A TG+G Sbjct 301 AYNGLGAVQQVARERRAAAHVSTGQG 326 >gi|326382130|ref|ZP_08203822.1| preprotein translocase subunit SecD [Gordonia neofelifaecis NRRL B-59395] gi|326198860|gb|EGD56042.1| preprotein translocase subunit SecD [Gordonia neofelifaecis NRRL B-59395] Length=544 Score = 517 bits (1332), Expect = 2e-144, Method: Compositional matrix adjust. Identities = 297/565 (53%), Positives = 372/565 (66%), Gaps = 56/565 (9%) Query 8 VHPARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGSAPSREAL 67 V P + L+VF V+L IY LVFFTG PKLGIDLQGGTRV LTART DG APS + L Sbjct 17 VAPWKPLTVFFVVLGIIYALVFFTGGGSPTPKLGIDLQGGTRVVLTARTDDGRAPSADQL 76 Query 68 AQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRPVLNSMPA 127 QA+QII RVNGLGV GSEVVV+G+ +VITVPG+DG +AR LGQTARLYIRPV+ PA Sbjct 77 DQARQIIDQRVNGLGVGGSEVVVNGNTIVITVPGDDGKQARALGQTARLYIRPVVEQAPA 136 Query 128 QPAAEEPQPAPSAEPQPPGQPAAPPPAQSGAPASPQPGAQPRPYPQDPAPSPNPTSPASP 187 P +P A+ +P+ + A Sbjct 137 TPQKPDPNAKKVADM-----------------------------------TPDEQTAAID 161 Query 188 PPAPPAEAPATDPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDILAGNDDPK 247 +APA + L A+ KL S + ++D L G+D P Sbjct 162 EQRALRQAPANADKATLDRLRAEMGKLDCSAS----------------ANDPLVGHDRPN 205 Query 248 LPLVTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANIWADYTAA 307 LV C YLL P +I G I NA +G +Q G + V++ FKG WA+YT Sbjct 206 EYLVACGEKDGMVYLLEPMLIDGRDIANAKAGQNQTG-AWTVNVDFKGDGKKTWAEYTGK 264 Query 308 HIGTQTAFTLDSQVVSAPQIQEAIPGGRTQISGGDPPFTAATARQLANVLKYGSLPLSFE 367 H+GTQTA TLD++V+SAP I + I G T+ISG FT A QLAN LKYGSLPLSF Sbjct 265 HVGTQTAVTLDTRVLSAPSINQQIIG-TTEISG---SFTQDEADQLANALKYGSLPLSFA 320 Query 368 PSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGSMVFAIL 427 S+AQTVSATLGL SL+AG+IAG +GL+LVL+YSL+YYR +G ++ LSL+ +G+MV+ I+ Sbjct 321 VSDAQTVSATLGLHSLQAGLIAGLVGLILVLIYSLIYYRAMGFISVLSLILAGAMVYGII 380 Query 428 VLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARK 487 VLLGR+I +TLDLAGIAGLIIGIG TADSFVV+FERIKDE+REGR+ RSAV RGW AR+ Sbjct 381 VLLGRWIGFTLDLAGIAGLIIGIGMTADSFVVYFERIKDEMREGRTVRSAVSRGWQSARR 440 Query 488 TIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSSLLA 547 T+ +GNAV+F+ AA++Y LA+G V+GFAFTLGLTT++D+V+VFLVT PLV LAS++ L+ Sbjct 441 TVWTGNAVSFICAAIIYMLAVGAVRGFAFTLGLTTLIDIVIVFLVTHPLVVLASRNKFLS 500 Query 548 KPAYNGLGAVQQVARERRAMARTGR 572 +P+ NGLGAV +VARERR A R Sbjct 501 RPSVNGLGAVSEVARERRKAAVAAR 525 >gi|256375830|ref|YP_003099490.1| protein-export membrane protein SecD [Actinosynnema mirum DSM 43827] gi|255920133|gb|ACU35644.1| protein-export membrane protein SecD [Actinosynnema mirum DSM 43827] Length=632 Score = 512 bits (1318), Expect = 7e-143, Method: Compositional matrix adjust. Identities = 314/616 (51%), Positives = 389/616 (64%), Gaps = 62/616 (10%) Query 8 VHPARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGSAPSREAL 67 + PA+YL F++++ +Y LVFFTG+ PKLGIDLQGGTRVTLTAR PDG P+ EAL Sbjct 8 IRPAKYLGAFVLIVAVLYALVFFTGNGSAIPKLGIDLQGGTRVTLTARAPDGKTPTDEAL 67 Query 68 AQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRPVLNSMPA 127 QA+ +I RVNGLGVSG+EVV DG NLVITVPG+D A++LGQTA+L R V+ + A Sbjct 68 NQARTLIETRVNGLGVSGAEVVRDGSNLVITVPGSDSEGAKSLGQTAKLNFRKVIGAPLA 127 Query 128 Q---PAAEEP-----QPAPSAEPQPPGQPAAPPPAQSGAPASPQPGAQPRP-YPQDPA-- 176 P+ E P PAP++ Q P A PP++ + S +P P Y Q P+ Sbjct 128 NQQAPSTETPPSTSGSPAPTSGSQAPTSGAGAPPSEGASAPSTTGQGRPAPAYQQQPSGD 187 Query 177 -------------PSPNPTSPASPPPAPPAEAPATDPRK-------------DLAERIAQ 210 +P +P S P A PATDP + D + I + Sbjct 188 AAQPSQSGQPQQSGAPESGAPQSGAPQSDAPNPATDPSQVDCQAVFLGNYSEDTTKAITE 247 Query 211 EKKLRQS---TNQYMQMVALQFQATRCESDDILAGNDDPKLPLVTCSTDHKTAYLLAP-- 265 + RQ T V A C ++D L GNDDP PL+TC D T Y+L P Sbjct 248 ARTCRQDPALTTLDASTVQQALAAFTCPTNDPLLGNDDPAQPLLTCDQDMVTKYVLGPVT 307 Query 266 ---------------SIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANIWADYTAAHIG 310 S ++G+ I NA SG D +G G+VV L FKG + W +T+A++ Sbjct 308 PPADGSVPDSDYSMYSRLTGEDIDNAVSGTDPQGAGFVVSLTFKGSGGDKWGKFTSANVN 367 Query 311 TQTAFTLDSQVVSAPQIQEAIPGGRTQISGGDPPFTAATARQLANVLKYGSLPLSFEPSE 370 Q A LDSQVVSAP I E I GG TQISG F A LANVLKYGSLPLSFE SE Sbjct 368 QQVAVVLDSQVVSAPNINEPILGGSTQISG---QFGQREADNLANVLKYGSLPLSFEASE 424 Query 371 AQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGSMVFAILVLL 430 A+TVSATLGL+SL AG+IAGA+GL LV +Y + YYR+LGLLT LSLV SG +V+A++VLL Sbjct 425 AETVSATLGLASLEAGLIAGAVGLFLVFLYCVFYYRLLGLLTILSLVLSGVIVYAVMVLL 484 Query 431 GRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTIV 490 GR + +TLDLAGIAGLII IG TADSFVVFFER+KDE+REGRSFRSAVPR W R+R+TI+ Sbjct 485 GRVVGFTLDLAGIAGLIIAIGITADSFVVFFERLKDEMREGRSFRSAVPRAWVRSRRTIL 544 Query 491 SGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKS--SLLAK 548 S +AV+FL A +LY +A+GQVKGFAFTLG++T+LDL+VVFLVT PLV + SKS L Sbjct 545 SADAVSFLCAMILYVIAVGQVKGFAFTLGVSTVLDLIVVFLVTHPLVAIISKSKTKFLNN 604 Query 549 PAYNGLGAVQQVARER 564 P GLG V A + Sbjct 605 PKVIGLGDVAHAAHLK 620 >gi|317508683|ref|ZP_07966338.1| protein-export membrane protein SecD [Segniliparus rugosus ATCC BAA-974] gi|316253004|gb|EFV12419.1| protein-export membrane protein SecD [Segniliparus rugosus ATCC BAA-974] Length=559 Score = 511 bits (1315), Expect = 2e-142, Method: Compositional matrix adjust. Identities = 314/565 (56%), Positives = 383/565 (68%), Gaps = 33/565 (5%) Query 5 SAPVHPARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGSAPSR 64 S + P +YL+VF++ L G+Y LV FTGDK P LGIDLQ GTRVTLTART DG P + Sbjct 5 SRGMQPLQYLTVFVLFLAGLYSLVLFTGDKKKIPHLGIDLQSGTRVTLTARTLDGKDPDQ 64 Query 65 EALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRPVLNS 124 +L A+ II RVNGLGV+GSEV++ G NLVITVPG +GS+A+ LGQTARLYIRPV Sbjct 65 NSLKLAKNIIEQRVNGLGVAGSEVLIQGSNLVITVPGEEGSQAKTLGQTARLYIRPV--- 121 Query 125 MPAQPAAEEPQPAPSAEPQPPGQPAAPPPAQSGAPASPQPGAQPRPYPQDPAPSPNPTSP 184 A++P E + AP P +P + P +PAP+ + Sbjct 122 ------AKDP---VKGEAMVWNKETAPDMFAPPPPPAPPANGEQAPPAGEPAPAGQDVTE 172 Query 185 ASPPPAPPAEAPATDPRKDLAERIAQEK----KLRQSTN--QYMQMVALQF-------QA 231 A A P D+ +++QE+ +L T+ ++V +F ++ Sbjct 173 EQAKEIQQARAIRQSP--DVLVKVSQEEIQNIRLMMLTDPEGTAKLVEQKFGPLDKAVKS 230 Query 232 TRCESDDILAGNDDPKLPLVTCSTDHKTAYLLAPSIISGDQIQNATSGMD-QRGIGYVVD 290 C D L GNDDPKLPLVTCSTD K +L PSII G +I A S D QRG + V Sbjct 231 LDCSKPDPLRGNDDPKLPLVTCSTDGKEKLVLEPSIIDGQEISEAGSQFDNQRGT-WSVS 289 Query 291 LQFKGPAANIWADYTAAHIGTQTAFTLDSQVVSAPQIQEAIPGGRTQISGGDPPFTAATA 350 L FK IW+ YT H+GTQTA TLDS+VVS P IQ I G TQI+G F+A A Sbjct 290 LSFKPHGQEIWSKYTEGHVGTQTAITLDSRVVSHPVIQGVI-NGSTQITG---DFSATQA 345 Query 351 RQLANVLKYGSLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGL 410 R+LANVL+YGSLPLSF SEAQT+SATLGL+SLRAG+IAG +GL+LVL+YSL YYR LG Sbjct 346 RELANVLRYGSLPLSFSSSEAQTISATLGLASLRAGLIAGVVGLVLVLLYSLFYYRALGF 405 Query 411 LTALSLVASGSMVFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIRE 470 L LSL+ +G +A++VLLGR+I +TLDLAGIAG IIGIG TADSFVV+FERIKDE+RE Sbjct 406 LALLSLILTGVANYAVVVLLGRWIGFTLDLAGIAGFIIGIGMTADSFVVYFERIKDEVRE 465 Query 471 GRSFRSAVPRGWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVF 530 GRSFRSAVPR W RAR+TI+SGNAVTF+AAAVLY LAIG+V+GFAFTLGLTTI+DLVVVF Sbjct 466 GRSFRSAVPRAWERARRTILSGNAVTFIAAAVLYILAIGEVRGFAFTLGLTTIMDLVVVF 525 Query 531 LVTWPLVYLASKSSLLAKPAYNGLG 555 LVT PLV+ AS + AKP+ GLG Sbjct 526 LVTHPLVHAASTRAWWAKPSRTGLG 550 >gi|302527848|ref|ZP_07280190.1| protein-export membrane protein SecD [Streptomyces sp. AA4] gi|302436743|gb|EFL08559.1| protein-export membrane protein SecD [Streptomyces sp. AA4] Length=570 Score = 508 bits (1309), Expect = 9e-142, Method: Compositional matrix adjust. Identities = 310/573 (55%), Positives = 394/573 (69%), Gaps = 24/573 (4%) Query 1 VASSSAPVHPARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGS 60 +A S+ + P RYL+ F ++++ +Y LVFFTG PKLGIDLQGGTRVTLTARTPDG Sbjct 1 MAPSAGHLRPGRYLAFFALIVVVLYALVFFTGSGKATPKLGIDLQGGTRVTLTARTPDGG 60 Query 61 APSREALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRP 120 P+R++L QA+QII RVNG+GV G+EVV+DG+N+VITVPG G EA+NLG+TA+L IR Sbjct 61 QPTRDSLNQARQIIETRVNGIGVGGTEVVLDGNNIVITVPGEQGDEAKNLGRTAKLGIRE 120 Query 121 VLNSMPAQPAAEEPQPAPSAEPQPPGQPAAPPPAQSGAPASPQPGAQPRPYPQDPAPSPN 180 V+ S+P PAA PA A A + AP+ P G P PS Sbjct 121 VITSVPNTPAAPPSAPASGAPS-----------APATAPSKPAGGGGAAGAPAQQPPSTT 169 Query 181 PTSPASPPPA---PPAEAPATDPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESD 237 P++PAS A P EA A L + ++ K +Q A C + Sbjct 170 PSAPASGQNAGKNPIEEARAVRQAPAL---LPKDPKNQQEAAAAQAAQQKALAALTCAPN 226 Query 238 --DILAGNDDPKLPLVTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKG 295 D L GND P PLVTC + T Y+L P II G +I NA SG DQ+ ++VDL FK Sbjct 227 VADPLEGNDLPNQPLVTCGDKNATKYVLGPEIIPGTEIANANSGYDQQRGQWIVDLSFKS 286 Query 296 PAANIWADYTAAHIGTQTAFTLDSQVVSAPQIQEAIPGGRTQISGGDPPFTAATARQLAN 355 W D+T+A+IG Q AF LD+ VVSAP +Q AI GG TQI+G FT A+ LA+ Sbjct 287 AGGKTWGDFTSANIGKQAAFVLDTDVVSAPTVQNAILGGNTQITG---KFTQTDAKNLAD 343 Query 356 VLKYGSLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALS 415 +LKYGSLPLSF+ S+A TVSATLG +SL+AG+IAGAIGL +V VY L YYR+LG+LT S Sbjct 344 ILKYGSLPLSFDSSDATTVSATLGYASLQAGLIAGAIGLAVVFVYCLFYYRLLGILTIWS 403 Query 416 LVASGSMVFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFR 475 LV SG +V+A+LVLLGR+I YTLDLAG+AGLII IG TADSFV++FER+KDEIREGR+FR Sbjct 404 LVLSGLLVYAVLVLLGRWIGYTLDLAGVAGLIIAIGITADSFVIYFERLKDEIREGRTFR 463 Query 476 SAVPRGWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWP 535 SAVPRGWARAR+TI++ +AV+FLAAA+LY +A+G V+GFAFTLG++T+LDLVVV+LVT P Sbjct 464 SAVPRGWARARRTILASDAVSFLAAAILYIIAVGDVQGFAFTLGMSTVLDLVVVYLVTHP 523 Query 536 LVYL--ASKSSLLAKPAYNGLGAVQQVARERRA 566 LV + SKS L+ P GLGAVQ++ +R++ Sbjct 524 LVAMVSTSKSKFLSNPRNLGLGAVQKLGSQRKS 556 >gi|333919486|ref|YP_004493067.1| protein-export membrane protein SecD [Amycolicicoccus subflavus DQS3-9A1] gi|333481707|gb|AEF40267.1| Protein-export membrane protein SecD [Amycolicicoccus subflavus DQS3-9A1] Length=518 Score = 503 bits (1296), Expect = 3e-140, Method: Compositional matrix adjust. Identities = 295/550 (54%), Positives = 370/550 (68%), Gaps = 55/550 (10%) Query 14 LSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGSAPSREALAQAQQI 73 LS F V+ + Y L+ FTGD+ P+LG+DLQGGTRV LTA TPDGS PS +AL QAQQI Sbjct 2 LSAFGVLFVLCYTLILFTGDRGATPRLGVDLQGGTRVVLTAITPDGSRPSEDALRQAQQI 61 Query 74 ISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRPVLNSMPAQPAAEE 133 IS R++GLGV+GSEV+VDGDNLVITVPG DG++AR LG+TAR+++RPV+ S Sbjct 62 ISTRIDGLGVAGSEVIVDGDNLVITVPGQDGAQARTLGETARMFVRPVIGS--------- 112 Query 134 PQPAPSAEPQPPGQPAAPPPAQSGAPASPQPGAQPRPYPQDPAPSPNPTSPASPPPAPPA 193 QPAP A P + ++P DP Sbjct 113 -QPAPDA-----------PAEGEDDEGAADDDSEPVSEVLDP------------------ 142 Query 194 EAPATDPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDILAGNDDPKLPLVTC 253 +LA +I++ + LRQS + +Q AL + C DILAGND P PLVTC Sbjct 143 --------DELAAQISEARDLRQSDDPAVQEEALT--SHECAPTDILAGNDLPDRPLVTC 192 Query 254 STDHKTAYLLAPSIISGDQIQNAT--SGMDQRGIGYVVDLQFKGPAANIWADYTAAHIGT 311 S D YLL P I G+ I + + G +Q+ + V +F G A WA +T ++G Sbjct 193 SNDGAMVYLLGPVFIEGEDIDSGSVSDGYNQQQARWEVSFRFGGDAGRDWATFTRENVGQ 252 Query 312 QTAFTLDSQVVSAPQIQEAIPGGR-TQISGGDPPFTAATARQLANVLKYGSLPLSFEPSE 370 Q AF LD+ VVSAP I+E P G T ISG FT R LAN L+YG+LPLSF+ S+ Sbjct 253 QAAFVLDTAVVSAPVIREPTPAGSATSISGN---FTQDEVRDLANQLRYGALPLSFDSSQ 309 Query 371 AQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGSMVFAILVLL 430 A TVSATLGL+SL AG+IAG I ++ VL+YSLLYYR+LG++ A SL +G +V+ ILVLL Sbjct 310 AVTVSATLGLASLEAGLIAGGIAMVAVLLYSLLYYRLLGVVAAFSLTLAGMIVYGILVLL 369 Query 431 GRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTIV 490 GRY+N+TLDLA IAG IIGIG TADSF+VFFERIKDE+REGRSFRSAV RGW RAR+TI+ Sbjct 370 GRYVNFTLDLAAIAGFIIGIGMTADSFIVFFERIKDEMREGRSFRSAVERGWQRARRTIL 429 Query 491 SGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSSLLAKPA 550 +GNAV+F+AAA+LY LA+GQVKGFAF LGL TILDLVVVF+VT+P++ LA+KS LL+ P Sbjct 430 TGNAVSFIAAAILYALAVGQVKGFAFALGLVTILDLVVVFMVTYPILALATKSKLLSNPR 489 Query 551 YNGLGAVQQV 560 +NGLGA+ QV Sbjct 490 FNGLGAITQV 499 >gi|340528669|gb|AEK43874.1| preprotein translocase SecD subunit [Amycolatopsis mediterranei S699] Length=601 Score = 500 bits (1287), Expect = 3e-139, Method: Compositional matrix adjust. Identities = 313/602 (52%), Positives = 405/602 (68%), Gaps = 37/602 (6%) Query 1 VASSSAPVHPARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGS 60 +A+S+ + P RYL++F +++I +Y LVF TG+ PKLGIDLQGGTRVTLTARTPDG Sbjct 1 MAASAGHLRPGRYLTLFALIVIVLYALVFLTGNHKPTPKLGIDLQGGTRVTLTARTPDGG 60 Query 61 APSREALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRP 120 P+RE+L QA+QII RVNG+GV G+EV++DG+N+VITVPG G +A++LG+TA+L R Sbjct 61 QPTRESLNQARQIIERRVNGIGVGGTEVLLDGNNVVITVPGEQGDQAKSLGKTAKLGFRK 120 Query 121 VLNSMPAQPAAEEPQPAPSAEPQPPGQPAAPPPAQSGAPA--SPQPGAQ----------- 167 V++S QP P+ P G P + P SGAPA S P + Sbjct 121 VVSS-ATQPVVPPQTAPPATTPPTSGAPKSSTPPSSGAPAATSGTPTTKPGGGGAPGAAL 179 Query 168 -PRPYPQDPAPSPNPTSPASPPPAPPAEAPATDPRKD--LAERIAQEKKLRQST------ 218 + APS + T P PA +D D A+ I K LRQ+ Sbjct 180 AQQQSTTPAAPSSSSTPPPPASTPAPATPAPSDGSVDAQTAQEIQVAKALRQNPQLVGAD 239 Query 219 ---NQYMQMVALQFQATRC--ESDDILAGNDDPKLPLVTCSTDHKT-AYLLAPSIISGDQ 272 NQ ++V+ A C + D L GNDDP+LPLV C DH T YL+ P + G + Sbjct 240 GQPNQ--ELVSKAMAALTCAPNAKDPLEGNDDPRLPLVACG-DHDTYKYLMEPEFLPGTE 296 Query 273 IQNATSGMDQRGIGYVVDLQFKGPAANIWADYTAAHIGTQTAFTLDSQVVSAPQIQEAIP 332 I +A S + + +VV+L FK IWAD+T+ ++G Q AF LD+QVVSAP IQ AI Sbjct 297 IADANSSYNSQNGQWVVNLSFKSAGTKIWADFTSKNVGQQAAFVLDTQVVSAPNIQVAIV 356 Query 333 GGRTQISGGDPPFTAATARQLANVLKYGSLPLSFEPSEAQTVSATLGLSSLRAGMIAGAI 392 G TQI+G FT A A+ L+++LKYGSLPLSF S+A TVSATLGL+SL+AG+IAG I Sbjct 357 DGNTQITG---KFTQAEAKDLSDILKYGSLPLSFASSDATTVSATLGLASLQAGLIAGGI 413 Query 393 GLLLVLVYSLLYYRVLGLLTALSLVASGSMVFAILVLLGRYINYTLDLAGIAGLIIGIGT 452 GLL+V +Y L YYR+LG+LT LSL SG++VFA+LVLLGR+I YTLDLAGIAGLII IG Sbjct 414 GLLVVFIYCLFYYRLLGVLTILSLALSGALVFAVLVLLGRWIGYTLDLAGIAGLIIAIGI 473 Query 453 TADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTIVSGNAVTFLAAAVLYFLAIGQVK 512 TADSFV++FER+KDEIREGR+FRSAVPRGW RAR+TI++ + V+FLAAA+LY +A+G V+ Sbjct 474 TADSFVIYFERLKDEIREGRTFRSAVPRGWVRARRTILASDGVSFLAAAILYVIAVGDVQ 533 Query 513 GFAFTLGLTTILDLVVVFLVTWPLVYL--ASKSSLLAKPAYNGLGAVQQVARERRAMART 570 GFAFTLG++T+LDLVVV+LVT PLV + SKS L+ P GLGAVQQ+ +R+ Sbjct 534 GFAFTLGMSTVLDLVVVYLVTHPLVAMVSTSKSPFLSNPRNLGLGAVQQLGSQRKKSTSV 593 Query 571 GR 572 GR Sbjct 594 GR 595 >gi|134098599|ref|YP_001104260.1| preprotein translocase subunit SecD [Saccharopolyspora erythraea NRRL 2338] gi|291008204|ref|ZP_06566177.1| preprotein translocase subunit SecD [Saccharopolyspora erythraea NRRL 2338] gi|133911222|emb|CAM01335.1| preprotein translocase subunit SecD [Saccharopolyspora erythraea NRRL 2338] Length=531 Score = 498 bits (1281), Expect = 1e-138, Method: Compositional matrix adjust. Identities = 304/566 (54%), Positives = 378/566 (67%), Gaps = 62/566 (10%) Query 8 VHPARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGSAPSREAL 67 + P RYL++F +++ +Y LVF TGD PKLGIDLQGGTRVTLTARTPDG P+ E+L Sbjct 8 IRPGRYLAIFTLIVAALYALVFLTGDHKPLPKLGIDLQGGTRVTLTARTPDGRPPTNESL 67 Query 68 AQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRPVLNSMPA 127 QA+QII RVNG+G+SGSEV DG NLVITVPG G EA+ LGQTA L R V+ M Sbjct 68 DQARQIIETRVNGMGISGSEVTRDGSNLVITVPGAGGEEAKQLGQTAELNFRKVVPGMMV 127 Query 128 QPAAEEPQPAPSAEPQPPGQPAAPPPAQSGAPASPQPGAQPRPYPQDPAPSPNPTSPASP 187 P Q A SPQ +P P DP Sbjct 128 PATPPAPPNQAPP--------------QGPAGNSPQGALNQQPAPADP------------ 161 Query 188 PPAPPAEAPATDPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDILAGNDDPK 247 I + KK RQST+ +QM ALQ A C ++D L GNDDPK Sbjct 162 --------------------IEEAKKTRQSTDPNVQMAALQ--ALDCNAEDPLRGNDDPK 199 Query 248 LPLVTCSTDHKTAYLLAPSIISGDQIQ-------NATSGMDQRGIGYVVDLQFKGPAANI 300 LPLV C + K Y+L P + G +I N T+G G+ VDL+FK A + Sbjct 200 LPLVACDREGKQKYVLEPVFLEGKEIDSAQASPPNPTNG----NPGWSVDLKFKSAGAKV 255 Query 301 WADYTAAHIGTQTAFTLDSQVVSAPQIQEAIPGGRTQISGGDPPFTAATARQLANVLKYG 360 WAD+T+A++ AF LD++VVSAP IQ + GG I+G F +A LAN+LKYG Sbjct 256 WADFTSANVQQNAAFVLDTEVVSAPTIQAPLLGGNANITG---QFNQQSATDLANILKYG 312 Query 361 SLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASG 420 SLPL+F+ SEA+TVSATLG++SL AG++AG +GLLLV VY L YYR+LGLLT LSLV SG Sbjct 313 SLPLAFDQSEAETVSATLGVASLEAGLLAGGLGLLLVAVYCLAYYRLLGLLTILSLVLSG 372 Query 421 SMVFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPR 480 ++V+A+LVLLGR++ +TLDLAG+AGLII IG TADSF+VFFER+KDEIREGR+FRSAVPR Sbjct 373 AIVYAVLVLLGRWVGFTLDLAGVAGLIIAIGITADSFIVFFERLKDEIREGRTFRSAVPR 432 Query 481 GWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLA 540 W RA++TI+S +AV+FLAAAVLY LA+GQVKGFAFTLG++T+LDLVVVFLVT PLV LA Sbjct 433 AWERAKRTILSADAVSFLAAAVLYVLAVGQVKGFAFTLGMSTVLDLVVVFLVTHPLVALA 492 Query 541 SKSSLLAKPAYNGLGAVQQVARERRA 566 SK+ L+KPA++GLGAVQ++ + RA Sbjct 493 SKNKFLSKPAFSGLGAVQRMGAQHRA 518 >gi|300787170|ref|YP_003767461.1| preprotein translocase SecD subunit [Amycolatopsis mediterranei U32] gi|299796684|gb|ADJ47059.1| preprotein translocase SecD subunit [Amycolatopsis mediterranei U32] Length=583 Score = 485 bits (1248), Expect = 1e-134, Method: Compositional matrix adjust. Identities = 306/584 (53%), Positives = 392/584 (68%), Gaps = 37/584 (6%) Query 19 VMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGSAPSREALAQAQQIISARV 78 +++I +Y LVF TG+ PKLGIDLQGGTRVTLTARTPDG P+RE+L QA+QII RV Sbjct 1 MIVIVLYALVFLTGNHKPTPKLGIDLQGGTRVTLTARTPDGGQPTRESLNQARQIIERRV 60 Query 79 NGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRPVLNSMPAQPAAEEPQPAP 138 NG+GV G+EV++DG+N+VITVPG G +A++LG+TA+L R V++S QP P Sbjct 61 NGIGVGGTEVLLDGNNVVITVPGEQGDQAKSLGKTAKLGFRKVVSS-ATQPVVPPQTAPP 119 Query 139 SAEPQPPGQPAAPPPAQSGAPA--SPQPGAQ------------PRPYPQDPAPSPNPTSP 184 + P G P + P SGAPA S P + + APS + T P Sbjct 120 ATTPPTSGAPKSSTPPSSGAPAATSGTPTTKPGGGGAPGAALAQQQSTTPAAPSSSSTPP 179 Query 185 ASPPPAPPAEAPATDPRKD--LAERIAQEKKLRQST---------NQYMQMVALQFQATR 233 PA +D D A+ I K LRQ+ NQ ++V+ A Sbjct 180 PPASTPAPATPAPSDGSVDAQTAQEIQVAKALRQNPQLVGADGQPNQ--ELVSKAMAALT 237 Query 234 C--ESDDILAGNDDPKLPLVTCSTDHKT-AYLLAPSIISGDQIQNATSGMDQRGIGYVVD 290 C + D L GNDDP+LPLV C DH T YL+ P + G +I +A S + + +VV+ Sbjct 238 CAPNAKDPLEGNDDPRLPLVACG-DHDTYKYLMEPEFLPGTEIADANSSYNSQNGQWVVN 296 Query 291 LQFKGPAANIWADYTAAHIGTQTAFTLDSQVVSAPQIQEAIPGGRTQISGGDPPFTAATA 350 L FK IWAD+T+ ++G Q AF LD+QVVSAP IQ AI G TQI+G FT A A Sbjct 297 LSFKSAGTKIWADFTSKNVGQQAAFVLDTQVVSAPNIQVAIVDGNTQITG---KFTQAEA 353 Query 351 RQLANVLKYGSLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGL 410 + L+++LKYGSLPLSF S+A TVSATLGL+SL+AG+IAG IGLL+V +Y L YYR+LG+ Sbjct 354 KDLSDILKYGSLPLSFASSDATTVSATLGLASLQAGLIAGGIGLLVVFIYCLFYYRLLGV 413 Query 411 LTALSLVASGSMVFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIRE 470 LT LSL SG++VFA+LVLLGR+I YTLDLAGIAGLII IG TADSFV++FER+KDEIRE Sbjct 414 LTILSLALSGALVFAVLVLLGRWIGYTLDLAGIAGLIIAIGITADSFVIYFERLKDEIRE 473 Query 471 GRSFRSAVPRGWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVF 530 GR+FRSAVPRGW RAR+TI++ + V+FLAAA+LY +A+G V+GFAFTLG++T+LDLVVV+ Sbjct 474 GRTFRSAVPRGWVRARRTILASDGVSFLAAAILYVIAVGDVQGFAFTLGMSTVLDLVVVY 533 Query 531 LVTWPLVYL--ASKSSLLAKPAYNGLGAVQQVARERRAMARTGR 572 LVT PLV + SKS L+ P GLGAVQQ+ +R+ GR Sbjct 534 LVTHPLVAMVSTSKSPFLSNPRNLGLGAVQQLGSQRKKSTSVGR 577 >gi|237785618|ref|YP_002906323.1| preprotein translocase subunit SecD [Corynebacterium kroppenstedtii DSM 44385] gi|237758530|gb|ACR17780.1| protein-export membrane protein [Corynebacterium kroppenstedtii DSM 44385] Length=648 Score = 454 bits (1168), Expect = 2e-125, Method: Compositional matrix adjust. Identities = 283/600 (48%), Positives = 368/600 (62%), Gaps = 46/600 (7%) Query 2 ASSSAPVHPARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGSA 61 A S+ P R + +F++ L+ +YLLVF TG+K PKLGIDLQGGTRVTL P GS Sbjct 8 ARSTKSRWPYRAIGIFVIFLVAVYLLVFLTGNKKPEPKLGIDLQGGTRVTLV---PQGSQ 64 Query 62 PSREALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRPV 121 PS + L QA++I+ RVNG+GVSG+ V DG+ LVITVPG+D ++ARNLGQT++L RPV Sbjct 65 PSNDQLEQARKILENRVNGMGVSGATVQTDGNTLVITVPGDDSAQARNLGQTSQLLFRPV 124 Query 122 LNSMPAQPAAEEPQPAPS----AEPQPPGQPAAPPPAQSG----APASPQPGAQPRPYPQ 173 LN A + + A + A +P AQ Q + + Q Sbjct 125 LNQQAAAQEVDRGKLAQTVVDMANRWVKTDVISPDNAQKALDELKKQLEQYNSSGQAQGQ 184 Query 174 DPAPSPNPTSPASPPPAPPAEAPATDPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATR 233 + P + P A PA + + +++ + A K RQS + A Sbjct 185 EAFAIPESMKITAKPEAKPANSIEENKQRE--QTSAMLLKDRQSEDPTTLQAAGSL--LE 240 Query 234 CESDDILAGNDDPKLPLVTCSTDHKTAYLLA-------------PSIISGDQIQNA---T 277 C+ D LAG DDP PLVTC D K+ +LL P ++G++I T Sbjct 241 CKGSDPLAGQDDPAKPLVTCDQD-KSVHLLDAAPVLVGQEGKKDPQRLTGEEIDTNSPIT 299 Query 278 SGMD----QRGIGYVVDLQFKGPAANIWADYTAAHIGTQTAFTLDSQVVSAPQIQEAIPG 333 G D Q I + K + WA+ T + G Q A TLDS+V+SAP IQ P Sbjct 300 GGYDSNSGQMAITFKFKTSNKDKGGDTWAEVTQKYQGQQVAITLDSEVISAPTIQSPTPA 359 Query 334 GRT-QISGGDPPFTAATARQLANVLKYGSLPLSF--EPSE----AQTVSATLGLSSLRAG 386 G T QI+G F+ A A+ LAN LKYG+LP+SF E E A T+ ATLG +SL+AG Sbjct 360 GSTTQITG---KFSEAEAKDLANNLKYGALPISFAGENGEKGGTATTIPATLGFASLKAG 416 Query 387 MIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGSMVFAILVLLGRYINYTLDLAGIAGL 446 +IAG IGL+LV +Y+L YYR LG++T SL+ S +++ LVLLGR++ Y+LDLAGIAGL Sbjct 417 LIAGGIGLILVALYALAYYRGLGVITIFSLLLSALLIYGSLVLLGRWVGYSLDLAGIAGL 476 Query 447 IIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTIVSGNAVTFLAAAVLYFL 506 IIGIGTTADSFVV+FERIKDEIR+GR+FRSAVP+ W RAR+TI+SGN V+ +AA VLY L Sbjct 477 IIGIGTTADSFVVYFERIKDEIRDGRTFRSAVPKAWERARRTILSGNLVSLIAAVVLYIL 536 Query 507 AIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSSLLAKPAYNGLGAVQQVARERRA 566 A+G VKGFAFTLGLTT+ DL VVFLV+ PL+ LAS+ +KP+ NGLGAV +VA RRA Sbjct 537 AVGDVKGFAFTLGLTTVFDLFVVFLVSAPLIILASRKPFFSKPSVNGLGAVMRVAERRRA 596 >gi|311739554|ref|ZP_07713389.1| protein-export membrane protein SecD [Corynebacterium pseudogenitalium ATCC 33035] gi|311305370|gb|EFQ81438.1| protein-export membrane protein SecD [Corynebacterium pseudogenitalium ATCC 33035] Length=638 Score = 439 bits (1130), Expect = 5e-121, Method: Compositional matrix adjust. Identities = 255/598 (43%), Positives = 356/598 (60%), Gaps = 50/598 (8%) Query 10 PARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGSAPSREALAQ 69 P R +++F+++++ IY L+F TG + + PKLGIDLQGGTRVTL P G P+++ L Q Sbjct 17 PKRAIALFVLIVVVIYALIFLTGSRQSTPKLGIDLQGGTRVTLA---PQGEEPTQDQLKQ 73 Query 70 AQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRPVLNSMPAQP 129 A+ I+ RVNG+GVSGSEVV++G+ LVITVPG D S+A+ +GQT++L+ RPV + P+ P Sbjct 74 ARNILEQRVNGMGVSGSEVVINGNTLVITVPGEDASQAQAVGQTSQLFFRPV--AKPSMP 131 Query 130 AAEEPQPAPSAEPQPPGQPAAPPPAQSGAPASPQPGAQPRPYPQ--------DPAPSPNP 181 E+ + E + S A+ Q + Q +P P Sbjct 132 DMEKL----NKELEDMANRWVKYDVLSAEEANKQMEQMTKAIAQQEAQMTGKEPKKQKAP 187 Query 182 TSPASPPPAPPAEAPATDPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDILA 241 A P P T R ++ E + ++++ T Q + Q S D LA Sbjct 188 KVSAKPLEEPSNSIEQTKRRDEVTEMLLKDRQSEDPTTQAAASALMTCQG----STDPLA 243 Query 242 GNDDPKLPLVTCSTDHKTAYLLAPS-IISGDQIQNAT--------------SGMDQRGIG 286 G DDP P VTC Y+L P+ +++G + +N T G++ + Sbjct 244 GADDPAKPFVTCDYSKGNPYVLEPAPLLNGIKDENGTRLTGNEIDTNSPIEGGLNGQSGQ 303 Query 287 YVVDLQFK---GP-AANIWADYTAAHIGTQTAFTLDSQVVSAPQIQEAIP-GGRTQISGG 341 ++ FK GP + WAD T H+ Q A TLDS V+SAP IQ A P G T I+G Sbjct 304 MEINFSFKTGDGPNGSQTWADLTQEHLKDQVAITLDSGVISAPVIQGATPVGSATSITG- 362 Query 342 DPPFTAATARQLANVLKYGSLPLSF-----EPS-EAQTVSATLGLSSLRAGMIAGAIGLL 395 F+ A+ LAN LKYG+LPLSF EP +++ TLG ++L+AG+IAG +GL+ Sbjct 363 --DFSQEEAQNLANNLKYGALPLSFAGENGEPGGTVESIPPTLGKAALQAGLIAGLVGLV 420 Query 396 LVLVYSLLYYRVLGLLTALSLVASGSMVFAILVLLGRYINYTLDLAGIAGLIIGIGTTAD 455 LV+ YSL Y+R L ++ + L+ASG + + LVLLGR+I Y+LDL+GIAGL+IG+G TAD Sbjct 421 LVMAYSLYYFRALAGVSLIFLIASGVLTYGSLVLLGRWIGYSLDLSGIAGLVIGVGATAD 480 Query 456 SFVVFFERIKDEIREGRSFRSAVPRGWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFA 515 SFVV++ERIKDE+ EGR+FRSA + W RAR TIV+GNAVT + + V+YFLAIG+VKGFA Sbjct 481 SFVVYYERIKDELLEGRTFRSATQKAWERARATIVTGNAVTLIGSVVVYFLAIGEVKGFA 540 Query 516 FTLGLTTILDLVVVFLVTWPLVYLASKSSLLAKPAYNGLGAVQQVARERRAMARTGRG 573 FT+GLTT+ DLVV FLV PL+ + + AKP+ NGLG + + ERR G G Sbjct 541 FTMGLTTVFDLVVSFLVMAPLMQMVGRRPAAAKPSMNGLGGIYALVEERRERGYFGSG 598 >gi|300781062|ref|ZP_07090916.1| protein-export membrane protein SecD [Corynebacterium genitalium ATCC 33030] gi|300532769|gb|EFK53830.1| protein-export membrane protein SecD [Corynebacterium genitalium ATCC 33030] Length=721 Score = 438 bits (1127), Expect = 1e-120, Method: Compositional matrix adjust. Identities = 268/622 (44%), Positives = 357/622 (58%), Gaps = 73/622 (11%) Query 5 SAPVHPARYLSVFLVMLIGIYLLVFFTGDKHTAPKLGIDLQGGTRVTLTARTPDGSAPSR 64 S PAR L++F ++++ Y LVFFTGD+ +PKLGIDLQGGTRVTL P G P++ Sbjct 40 SKRAWPARALALFALIVVATYALVFFTGDRTASPKLGIDLQGGTRVTLV---PQGEQPTQ 96 Query 65 EALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRPVLNS 124 E L QA+ I+ RVNG+GVS + VVVDG+ LVITV G D SE RN+GQT++L RPV Sbjct 97 EQLDQARTILENRVNGMGVSDASVVVDGNTLVITVAGEDTSEVRNIGQTSQLLFRPV--- 153 Query 125 MPAQPAAEEPQPAPSAEPQPPGQPA---------APPPAQSGAP---------------A 160 + P A P G+ A P A++ A Sbjct 154 -----GQQSPMIDQEAFPDVFGEMANRWVEYRVLTPEEAETTVKQFADGMNQQIEAMKRA 208 Query 161 SPQPGAQPRPYPQDPAPSPNPTSPASPPPAPPAEAPATDPRKDLAERIAQEKKLRQSTNQ 220 + G + + P P P A P P P A+D R++ E + ++++ T Sbjct 209 QEEQGEEVPEGMELPEPIEAPEITAQPKPEPDNTLEASDFRQETTEMLREDRQSDDPTKL 268 Query 221 YMQMVALQFQATRCESD-----DILAGNDDPKLPLVTCSTDHKTAYLL--APSI------ 267 + +Q T D D LAG DDP PLV C + LL P + Sbjct 269 QAATILMQALCTPKGEDGTVPADPLAGTDDPTKPLVACDSSGGQPMLLEAVPLLQGVEDP 328 Query 268 ----ISGDQIQ---------NATSGMDQRGIGYVVDLQFKGPAANIWADYTAAHIGTQTA 314 ++G +I N +G + + D +F G ++ WA+ T A +G Q A Sbjct 329 EGPRLTGSEIDTNRPITGGFNPQTGQMEINFAFKQDGEFNG--SSTWAELTGAMVGQQVA 386 Query 315 FTLDSQVVSAPQIQEAIP-GGRTQISGGDPPFTAATARQLANVLKYGSLPLSF-----EP 368 TLDSQV+SAPQIQ P G T I+G FT A LAN L+YG+LPLSF EP Sbjct 387 ITLDSQVISAPQIQSPTPVGSATSITG---QFTEEEAETLANNLRYGALPLSFAGENGEP 443 Query 369 -SEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGSMVFAIL 427 A TV +LG++SL AG+IAG +GLLLV Y YYR+ G+++ +L A+G++V+ L Sbjct 444 GGTAMTVPPSLGVASLNAGIIAGLVGLLLVAAYVFYYYRLFGVISLFTLFAAGALVYGAL 503 Query 428 VLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARK 487 VLLGR+I YTLDL+G+AGL+IGIGTTADSFVV +ERIKDE+R GR+ RSA GW RA+ Sbjct 504 VLLGRWIGYTLDLSGVAGLVIGIGTTADSFVVLYERIKDEVRRGRTLRSATLNGWDRAKD 563 Query 488 TIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSSLLA 547 TIV+GN VT + A V+Y LA+G+VKGFAFT+GLTTI DL+V FLVT PL+ LAS++ A Sbjct 564 TIVTGNIVTLIGAVVIYILAVGEVKGFAFTMGLTTIFDLLVTFLVTAPLMILASRNPFWA 623 Query 548 KPAYNGLGAVQQVARERRAMAR 569 KP+ NG+G + A+ + A R Sbjct 624 KPSVNGMGKAFEAAKSKNANPR 645 Lambda K H 0.317 0.134 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1288955502984 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40