BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2588c Length=115 Score E Sequences producing significant alignments: (Bits) Value gi|15609725|ref|NP_217104.1| preprotein translocase subunit YajC... 231 3e-59 gi|118617348|ref|YP_905680.1| preprotein translocase subunit Yaj... 165 2e-39 gi|240173206|ref|ZP_04751864.1| preprotein translocase subunit Y... 165 2e-39 gi|296170838|ref|ZP_06852399.1| protein-export membrane protein ... 145 2e-33 gi|342858587|ref|ZP_08715242.1| preprotein translocase subunit Y... 143 1e-32 gi|254819905|ref|ZP_05224906.1| preprotein translocase subunit Y... 142 2e-32 gi|15827163|ref|NP_301426.1| preprotein translocase subunit YajC... 142 2e-32 gi|333991015|ref|YP_004523629.1| hypothetical protein JDM601_237... 140 5e-32 gi|145224399|ref|YP_001135077.1| preprotein translocase subunit ... 140 6e-32 gi|120403567|ref|YP_953396.1| preprotein translocase subunit Yaj... 140 6e-32 gi|118464311|ref|YP_882651.1| preprotein translocase subunit Yaj... 139 1e-31 gi|41407140|ref|NP_959976.1| preprotein translocase subunit YajC... 139 1e-31 gi|118471559|ref|YP_887279.1| preprotein translocase subunit Yaj... 136 1e-30 gi|108799242|ref|YP_639439.1| preprotein translocase subunit Yaj... 132 1e-29 gi|169629965|ref|YP_001703614.1| preprotein translocase subunit ... 131 3e-29 gi|466824|gb|AAA17099.1| B1177_C3_235 [Mycobacterium leprae] 108 3e-22 gi|226306413|ref|YP_002766373.1| protein-export membrane protein... 87.8 5e-16 gi|229491997|ref|ZP_04385814.1| preprotein translocase, YajC sub... 87.8 5e-16 gi|134098598|ref|YP_001104259.1| preprotein translocase, YajC su... 87.0 9e-16 gi|312139496|ref|YP_004006832.1| preprotein translocase subunit ... 85.1 3e-15 gi|326382129|ref|ZP_08203821.1| preprotein translocase, YajC sub... 84.3 5e-15 gi|258653553|ref|YP_003202709.1| preprotein translocase subunit ... 84.0 6e-15 gi|296139650|ref|YP_003646893.1| preprotein translocase subunit ... 79.0 2e-13 gi|331697368|ref|YP_004333607.1| preprotein translocase subunit ... 76.3 1e-12 gi|226366283|ref|YP_002784066.1| protein-export membrane protein... 76.3 2e-12 gi|256375829|ref|YP_003099489.1| preprotein translocase subunit ... 75.1 4e-12 gi|25028328|ref|NP_738382.1| hypothetical protein CE1772 [Coryne... 73.9 7e-12 gi|325001437|ref|ZP_08122549.1| preprotein translocase, YajC sub... 72.8 2e-11 gi|257055539|ref|YP_003133371.1| preprotein translocase, YajC su... 72.4 2e-11 gi|319947803|ref|ZP_08021997.1| preprotein translocase, YajC sub... 72.4 2e-11 gi|333919485|ref|YP_004493066.1| preprotein translocase subunit ... 72.0 3e-11 gi|296393862|ref|YP_003658746.1| preprotein translocase subunit ... 70.9 5e-11 gi|300787171|ref|YP_003767462.1| preprotein translocase YajC sub... 70.1 1e-10 gi|271967388|ref|YP_003341584.1| preprotein translocase subunit ... 69.3 2e-10 gi|111023847|ref|YP_706819.1| hypothetical protein RHA1_ro06895 ... 68.6 3e-10 gi|262202233|ref|YP_003273441.1| preprotein translocase subunit ... 68.2 4e-10 gi|302527849|ref|ZP_07280191.1| predicted protein [Streptomyces ... 68.2 4e-10 gi|295839918|ref|ZP_06826851.1| secreted protein [Streptomyces s... 67.4 6e-10 gi|254391317|ref|ZP_05006521.1| secreted protein [Streptomyces c... 66.6 1e-09 gi|19552869|ref|NP_600871.1| preprotein translocase subunit YajC... 66.6 1e-09 gi|145295779|ref|YP_001138600.1| hypothetical protein cgR_1704 [... 66.6 1e-09 gi|317508681|ref|ZP_07966336.1| preprotein translocase [Segnilip... 66.2 1e-09 gi|302517989|ref|ZP_07270331.1| secreted protein [Streptomyces s... 65.5 3e-09 gi|256832599|ref|YP_003161326.1| preprotein translocase, YajC su... 64.3 5e-09 gi|297626358|ref|YP_003688121.1| Preprotein translocase subunit ... 64.3 5e-09 gi|172040617|ref|YP_001800331.1| preprotein translocase SecN sub... 64.3 6e-09 gi|296270035|ref|YP_003652667.1| preprotein translocase subunit ... 63.9 7e-09 gi|297195498|ref|ZP_06912896.1| secreted protein [Streptomyces p... 63.2 1e-08 gi|343924325|ref|ZP_08763876.1| putative protein-export membrane... 62.8 2e-08 gi|284991598|ref|YP_003410152.1| preprotein translocase subunit ... 62.4 2e-08 >gi|15609725|ref|NP_217104.1| preprotein translocase subunit YajC [Mycobacterium tuberculosis H37Rv] gi|15842127|ref|NP_337164.1| preprotein translocase subunit YajC [Mycobacterium tuberculosis CDC1551] gi|31793772|ref|NP_856265.1| preprotein translocase subunit YajC [Mycobacterium bovis AF2122/97] 82 more sequence titles Length=115 Score = 231 bits (589), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 115/115 (100%), Positives = 115/115 (100%), Gaps = 0/115 (0%) Query 1 MESFVLFLPFLLIMGGFMYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIAD 60 MESFVLFLPFLLIMGGFMYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIAD Sbjct 1 MESFVLFLPFLLIMGGFMYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIAD 60 Query 61 DTIDLEIAPGVVTTWMKLAIRDRILPDDDIDEELNEDLDKDVDDVAGERRVTNDS 115 DTIDLEIAPGVVTTWMKLAIRDRILPDDDIDEELNEDLDKDVDDVAGERRVTNDS Sbjct 61 DTIDLEIAPGVVTTWMKLAIRDRILPDDDIDEELNEDLDKDVDDVAGERRVTNDS 115 >gi|118617348|ref|YP_905680.1| preprotein translocase subunit YajC [Mycobacterium ulcerans Agy99] gi|183982133|ref|YP_001850424.1| membrane protein secretion factor YajC [Mycobacterium marinum M] gi|118569458|gb|ABL04209.1| conserved membrane protein secretion factor YajC [Mycobacterium ulcerans Agy99] gi|183175459|gb|ACC40569.1| conserved membrane protein secretion factor YajC [Mycobacterium marinum M] Length=113 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 75/86 (88%), Positives = 84/86 (98%), Gaps = 0/86 (0%) Query 1 MESFVLFLPFLLIMGGFMYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIAD 60 MESFVLFLPFLLIMGGFMYFASRRQR+AMQATIDLH+SL+PG+RVHTTSGL+AT+V I + Sbjct 1 MESFVLFLPFLLIMGGFMYFASRRQRKAMQATIDLHESLEPGDRVHTTSGLQATVVGITE 60 Query 61 DTIDLEIAPGVVTTWMKLAIRDRILP 86 DT+DLEIAPGVVTTWMKLA+RDRILP Sbjct 61 DTVDLEIAPGVVTTWMKLAVRDRILP 86 >gi|240173206|ref|ZP_04751864.1| preprotein translocase subunit YajC [Mycobacterium kansasii ATCC 12478] Length=127 Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 77/86 (90%), Positives = 83/86 (97%), Gaps = 0/86 (0%) Query 1 MESFVLFLPFLLIMGGFMYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIAD 60 MES VLFLPFLLIMGGFMYFASRRQRRAMQATIDLH+SL+PG+RVHTTSG+EAT+V I D Sbjct 3 MESLVLFLPFLLIMGGFMYFASRRQRRAMQATIDLHESLEPGDRVHTTSGMEATVVGITD 62 Query 61 DTIDLEIAPGVVTTWMKLAIRDRILP 86 DT+DLEIAPGVVTTWMKLAIRDRILP Sbjct 63 DTVDLEIAPGVVTTWMKLAIRDRILP 88 >gi|296170838|ref|ZP_06852399.1| protein-export membrane protein YajC [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894494|gb|EFG74235.1| protein-export membrane protein YajC [Mycobacterium parascrofulaceum ATCC BAA-614] Length=129 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 78/86 (91%), Positives = 84/86 (98%), Gaps = 0/86 (0%) Query 1 MESFVLFLPFLLIMGGFMYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIAD 60 MES +LFLPFLLIMGGFMYFASRRQ+RAMQATIDLH+SLQPG+RVHTTSGL+AT+VAI D Sbjct 13 MESLILFLPFLLIMGGFMYFASRRQKRAMQATIDLHESLQPGDRVHTTSGLQATVVAITD 72 Query 61 DTIDLEIAPGVVTTWMKLAIRDRILP 86 DTIDLEIAPGVVTTWMKLAIRDRILP Sbjct 73 DTIDLEIAPGVVTTWMKLAIRDRILP 98 >gi|342858587|ref|ZP_08715242.1| preprotein translocase subunit YajC [Mycobacterium colombiense CECT 3035] gi|342134291|gb|EGT87471.1| preprotein translocase subunit YajC [Mycobacterium colombiense CECT 3035] Length=108 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 82/114 (72%), Positives = 96/114 (85%), Gaps = 7/114 (6%) Query 1 MESFVLFLPFLLIMGGFMYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIAD 60 M+S +LFLPFLLIMGGFMY ASRRQ+RAMQATIDLH+SL+PG+RVHTTSGL+AT+VAI D Sbjct 1 MQSLILFLPFLLIMGGFMYLASRRQKRAMQATIDLHESLRPGDRVHTTSGLQATVVAITD 60 Query 61 DTIDLEIAPGVVTTWMKLAIRDRILPDDDIDEELNEDLDKDVDDVAGERRVTND 114 + +DLEI+PGVVTTWMKLAIRDRILPDDD EDL D +D A E ++ D Sbjct 61 ENVDLEISPGVVTTWMKLAIRDRILPDDD------EDL-ADGEDSADEGSISKD 107 >gi|254819905|ref|ZP_05224906.1| preprotein translocase subunit YajC [Mycobacterium intracellulare ATCC 13950] Length=108 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 75/86 (88%), Positives = 83/86 (97%), Gaps = 0/86 (0%) Query 1 MESFVLFLPFLLIMGGFMYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIAD 60 MES +LFLPFLLIMGGFMYFASRRQ+RAMQATIDLH+SL PG+RVHTTSGL+AT+VAI D Sbjct 1 MESLILFLPFLLIMGGFMYFASRRQKRAMQATIDLHESLSPGDRVHTTSGLQATVVAITD 60 Query 61 DTIDLEIAPGVVTTWMKLAIRDRILP 86 DT+DLEI+PGVVTTWMKLAIRDRILP Sbjct 61 DTVDLEISPGVVTTWMKLAIRDRILP 86 >gi|15827163|ref|NP_301426.1| preprotein translocase subunit YajC [Mycobacterium leprae TN] gi|221229641|ref|YP_002503057.1| preprotein translocase subunit YajC [Mycobacterium leprae Br4923] gi|6136489|sp|Q49647.2|Y486_MYCLE RecName: Full=Uncharacterized protein ML0486; Flags: Precursor gi|3136008|emb|CAA19079.1| putative secreted protein [Mycobacterium leprae] gi|13092711|emb|CAC29994.1| putative secreted protein [Mycobacterium leprae] gi|219932748|emb|CAR70579.1| putative secreted protein [Mycobacterium leprae Br4923] Length=114 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 73/88 (83%), Positives = 83/88 (95%), Gaps = 0/88 (0%) Query 1 MESFVLFLPFLLIMGGFMYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIAD 60 MES VL L FLLIMGGFM+FASRRQRR+MQATIDL++SLQPG+RV+TTSGL+ATI+ + D Sbjct 1 MESLVLLLLFLLIMGGFMFFASRRQRRSMQATIDLYNSLQPGDRVNTTSGLQATIIVVGD 60 Query 61 DTIDLEIAPGVVTTWMKLAIRDRILPDD 88 DT+DLEIAPGVVTTWMKLAIRDRILPDD Sbjct 61 DTVDLEIAPGVVTTWMKLAIRDRILPDD 88 >gi|333991015|ref|YP_004523629.1| hypothetical protein JDM601_2375 [Mycobacterium sp. JDM601] gi|333486983|gb|AEF36375.1| membrane protein secretion factor YajC [Mycobacterium sp. JDM601] Length=99 Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 64/84 (77%), Positives = 75/84 (90%), Gaps = 0/84 (0%) Query 5 VLFLPFLLIMGGFMYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIADDTID 64 V FLP L++MG FM+FASRRQ+RAMQATIDLH+SL+ G+RVHTTSG+EATI I DD +D Sbjct 2 VAFLPLLIVMGAFMFFASRRQKRAMQATIDLHESLRVGDRVHTTSGMEATITGITDDNVD 61 Query 65 LEIAPGVVTTWMKLAIRDRILPDD 88 LEIAPGVVTTWMKLAIRD+I P+D Sbjct 62 LEIAPGVVTTWMKLAIRDKIEPED 85 >gi|145224399|ref|YP_001135077.1| preprotein translocase subunit YajC [Mycobacterium gilvum PYR-GCK] gi|315444731|ref|YP_004077610.1| protein translocase subunit yajC [Mycobacterium sp. Spyr1] gi|145216885|gb|ABP46289.1| protein translocase subunit yajC [Mycobacterium gilvum PYR-GCK] gi|315263034|gb|ADT99775.1| protein translocase subunit yajC [Mycobacterium sp. Spyr1] Length=110 Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 64/94 (69%), Positives = 81/94 (87%), Gaps = 0/94 (0%) Query 4 FVLFLPFLLIMGGFMYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIADDTI 63 V+FLP L+IMG FMYFASRRQ++AMQATIDLH+SL+ G+R+HTTSGL+ TI I DD + Sbjct 3 LVVFLPLLIIMGAFMYFASRRQKKAMQATIDLHNSLEIGDRIHTTSGLQGTITGIGDDYV 62 Query 64 DLEIAPGVVTTWMKLAIRDRILPDDDIDEELNED 97 D+EIAPGVVTTWMKLA+RDRI+ D + D EL+++ Sbjct 63 DVEIAPGVVTTWMKLAVRDRIVDDVEDDAELDDE 96 >gi|120403567|ref|YP_953396.1| preprotein translocase subunit YajC [Mycobacterium vanbaalenii PYR-1] gi|119956385|gb|ABM13390.1| protein translocase subunit yajC [Mycobacterium vanbaalenii PYR-1] Length=115 Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 64/81 (80%), Positives = 72/81 (89%), Gaps = 0/81 (0%) Query 4 FVLFLPFLLIMGGFMYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIADDTI 63 V+FLP L+IMG FMYFASRRQ++AMQATIDLH+SLQ G+RVHTTSGL ATI I DD + Sbjct 3 LVVFLPLLIIMGAFMYFASRRQKKAMQATIDLHNSLQIGDRVHTTSGLRATITGITDDYV 62 Query 64 DLEIAPGVVTTWMKLAIRDRI 84 DLEIAPGVVTTWMKLA+RDRI Sbjct 63 DLEIAPGVVTTWMKLAVRDRI 83 >gi|118464311|ref|YP_882651.1| preprotein translocase subunit YajC [Mycobacterium avium 104] gi|118165598|gb|ABK66495.1| preprotein translocase, YajC subunit [Mycobacterium avium 104] Length=110 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 73/86 (85%), Positives = 83/86 (97%), Gaps = 0/86 (0%) Query 1 MESFVLFLPFLLIMGGFMYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIAD 60 MES +LFLPFLLIMGGFMYFASRRQRRAMQATI+LH+SL+PG+RVHTTSGL+AT+V + D Sbjct 3 MESLILFLPFLLIMGGFMYFASRRQRRAMQATIELHESLRPGDRVHTTSGLQATVVGLTD 62 Query 61 DTIDLEIAPGVVTTWMKLAIRDRILP 86 DT+DLEIAPGVVTTWMKLAIRDRI+P Sbjct 63 DTVDLEIAPGVVTTWMKLAIRDRIVP 88 >gi|41407140|ref|NP_959976.1| preprotein translocase subunit YajC [Mycobacterium avium subsp. paratuberculosis K-10] gi|254775917|ref|ZP_05217433.1| preprotein translocase subunit YajC [Mycobacterium avium subsp. avium ATCC 25291] gi|41395491|gb|AAS03359.1| hypothetical protein MAP_1042 [Mycobacterium avium subsp. paratuberculosis K-10] gi|336461529|gb|EGO40397.1| preprotein translocase, YajC subunit [Mycobacterium avium subsp. paratuberculosis S397] Length=108 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 73/86 (85%), Positives = 83/86 (97%), Gaps = 0/86 (0%) Query 1 MESFVLFLPFLLIMGGFMYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIAD 60 MES +LFLPFLLIMGGFMYFASRRQRRAMQATI+LH+SL+PG+RVHTTSGL+AT+V + D Sbjct 1 MESLILFLPFLLIMGGFMYFASRRQRRAMQATIELHESLRPGDRVHTTSGLQATVVGLTD 60 Query 61 DTIDLEIAPGVVTTWMKLAIRDRILP 86 DT+DLEIAPGVVTTWMKLAIRDRI+P Sbjct 61 DTVDLEIAPGVVTTWMKLAIRDRIVP 86 >gi|118471559|ref|YP_887279.1| preprotein translocase subunit YajC [Mycobacterium smegmatis str. MC2 155] gi|118172846|gb|ABK73742.1| preprotein translocase, YajC subunit [Mycobacterium smegmatis str. MC2 155] Length=107 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 63/98 (65%), Positives = 80/98 (82%), Gaps = 5/98 (5%) Query 4 FVLFLPFLLIMGGFMYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIADDTI 63 V+FLP L+IMG FM+FASRRQ++AMQATIDLH+SLQ G+++HTTSGL+ TI I+DD + Sbjct 3 LVIFLPLLIIMGAFMFFASRRQKKAMQATIDLHNSLQIGDQIHTTSGLKGTITGISDDYV 62 Query 64 DLEIAPGVVTTWMKLAIRDRI-----LPDDDIDEELNE 96 DLEIAPGV+TTWMKLA+RDRI DD++ E N+ Sbjct 63 DLEIAPGVITTWMKLAVRDRIDSGLAQDDDELSEHTND 100 >gi|108799242|ref|YP_639439.1| preprotein translocase subunit YajC [Mycobacterium sp. MCS] gi|119868358|ref|YP_938310.1| preprotein translocase subunit YajC [Mycobacterium sp. KMS] gi|126434900|ref|YP_001070591.1| preprotein translocase subunit YajC [Mycobacterium sp. JLS] gi|108769661|gb|ABG08383.1| protein translocase subunit yajC [Mycobacterium sp. MCS] gi|119694447|gb|ABL91520.1| protein translocase subunit yajC [Mycobacterium sp. KMS] gi|126234700|gb|ABN98100.1| protein translocase subunit yajC [Mycobacterium sp. JLS] Length=117 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 60/81 (75%), Positives = 71/81 (88%), Gaps = 0/81 (0%) Query 4 FVLFLPFLLIMGGFMYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIADDTI 63 V+FLP L+IMG FM+FASRRQ++AMQATIDLH+SLQ G+R+HTTSGL+ TI I DD + Sbjct 3 LVVFLPLLIIMGAFMFFASRRQKKAMQATIDLHESLQIGDRIHTTSGLQGTITGITDDDV 62 Query 64 DLEIAPGVVTTWMKLAIRDRI 84 LEIAPGVVTTWMKLA+RDRI Sbjct 63 HLEIAPGVVTTWMKLAVRDRI 83 >gi|169629965|ref|YP_001703614.1| preprotein translocase subunit YajC [Mycobacterium abscessus ATCC 19977] gi|169241932|emb|CAM62960.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=112 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 63/105 (60%), Positives = 84/105 (80%), Gaps = 3/105 (2%) Query 1 MESFVLFLPFLLIMGGFMYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIAD 60 MES ++FLP +L+MG F++FA+RRQR+A+ ATI+LH SL G+RVHTTSGL+ TI A+ D Sbjct 1 MESIIVFLPLILVMGAFLFFANRRQRKALDATIELHASLAIGDRVHTTSGLQGTITAVTD 60 Query 61 DTIDLEIAPGVVTTWMKLAIRDRILPDDDIDEELNEDLDKDVDDV 105 DT+DLEIAPGVVT WMKLA+RD+I+ D++++ D D V DV Sbjct 61 DTVDLEIAPGVVTRWMKLAVRDKIV--DEVEDSAAAD-DGTVRDV 102 >gi|466824|gb|AAA17099.1| B1177_C3_235 [Mycobacterium leprae] Length=86 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 50/60 (84%), Positives = 58/60 (97%), Gaps = 0/60 (0%) Query 29 MQATIDLHDSLQPGERVHTTSGLEATIVAIADDTIDLEIAPGVVTTWMKLAIRDRILPDD 88 MQATIDL++SLQPG+RV+TTSGL+ATI+ + DDT+DLEIAPGVVTTWMKLAIRDRILPDD Sbjct 1 MQATIDLYNSLQPGDRVNTTSGLQATIIVVGDDTVDLEIAPGVVTTWMKLAIRDRILPDD 60 >gi|226306413|ref|YP_002766373.1| protein-export membrane protein YajC [Rhodococcus erythropolis PR4] gi|226185530|dbj|BAH33634.1| putative protein-export membrane protein YajC [Rhodococcus erythropolis PR4] Length=113 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 39/75 (52%), Positives = 57/75 (76%), Gaps = 0/75 (0%) Query 18 MYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIADDTIDLEIAPGVVTTWMK 77 M+ R+Q++A+ AT ++ DSLQ G+RV TT+GL ATI ++ DDT+DLEIA GV+TTW + Sbjct 17 MFLGMRKQKKALAATSEMQDSLQVGDRVQTTAGLYATIASLDDDTVDLEIADGVITTWSR 76 Query 78 LAIRDRILPDDDIDE 92 L IR+R++ + DE Sbjct 77 LVIRERVVETTETDE 91 >gi|229491997|ref|ZP_04385814.1| preprotein translocase, YajC subunit [Rhodococcus erythropolis SK121] gi|229321129|gb|EEN86933.1| preprotein translocase, YajC subunit [Rhodococcus erythropolis SK121] Length=115 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 45/100 (45%), Positives = 71/100 (71%), Gaps = 3/100 (3%) Query 18 MYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIADDTIDLEIAPGVVTTWMK 77 M+ R+Q++A+ AT ++ DSLQ G+RV TT+GL ATI ++ DDT+DLEIA GV+TTW + Sbjct 17 MFLGMRKQKKALAATSEMQDSLQVGDRVQTTAGLYATIASLDDDTVDLEIADGVITTWSR 76 Query 78 LAIRDRILPDDDIDEELNEDLDKDVDDVAG--ERRVTNDS 115 L IR+R++ + D E ++D ++++ A E R+T +S Sbjct 77 LVIRERVVETTETD-EYDDDSISEIEESAADTEIRLTKES 115 >gi|134098598|ref|YP_001104259.1| preprotein translocase, YajC subunit [Saccharopolyspora erythraea NRRL 2338] gi|291008205|ref|ZP_06566178.1| preprotein translocase, YajC subunit [Saccharopolyspora erythraea NRRL 2338] gi|133911221|emb|CAM01334.1| preprotein translocase, YajC subunit [Saccharopolyspora erythraea NRRL 2338] Length=133 Score = 87.0 bits (214), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 45/115 (40%), Positives = 69/115 (60%), Gaps = 9/115 (7%) Query 6 LFLPFLL-IMGGFMYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIADDTID 64 L P L+ ++ ++ +R+Q+RAMQ L +SL G+RV TTSGL T+V+ +DDTI+ Sbjct 6 LIFPLLIALLAVPLFLQARKQKRAMQDQQKLQNSLAAGDRVMTTSGLFGTVVSTSDDTIE 65 Query 65 LEIAPGVVTTWMKLAIRDRILPDDD--------IDEELNEDLDKDVDDVAGERRV 111 LEIA G+ TTW++ A+R+++ + DEE E DKD + A E + Sbjct 66 LEIASGITTTWVRAAVREKVETGSEAATETAASTDEESAESADKDTAEQATESKA 120 >gi|312139496|ref|YP_004006832.1| preprotein translocase subunit yajc [Rhodococcus equi 103S] gi|325672614|ref|ZP_08152310.1| protein-export membrane protein YajC [Rhodococcus equi ATCC 33707] gi|311888835|emb|CBH48147.1| putative preprotein translocase subunit YajC [Rhodococcus equi 103S] gi|325556491|gb|EGD26157.1| protein-export membrane protein YajC [Rhodococcus equi ATCC 33707] Length=110 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 43/97 (45%), Positives = 64/97 (66%), Gaps = 2/97 (2%) Query 18 MYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIADDTIDLEIAPGVVTTWMK 77 M+ RRQ++ MQ T DL DSL+ G+RV TT+GL AT+ + + T+DLEIAPGVVTTW + Sbjct 16 MFLGIRRQKKEMQKTADLQDSLKIGDRVMTTAGLHATVAGLDEGTVDLEIAPGVVTTWSR 75 Query 78 LAIRDRILPDDDIDEELNEDLDKDVDDVAGERRVTND 114 + +R+ ++ +D E E D+ DD +RR+ + Sbjct 76 MVVREHVVDEDAAGTESVEHDDETPDDT--QRRLNGE 110 >gi|326382129|ref|ZP_08203821.1| preprotein translocase, YajC subunit [Gordonia neofelifaecis NRRL B-59395] gi|326198859|gb|EGD56041.1| preprotein translocase, YajC subunit [Gordonia neofelifaecis NRRL B-59395] Length=140 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 43/92 (47%), Positives = 60/92 (66%), Gaps = 4/92 (4%) Query 1 MESFVLFLPFLLIMGGFMYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIAD 60 MES +L L L +M GFM+F+ R Q++ A ++ SL+PG RV SGL AT+V D Sbjct 1 MESLILPL-MLALMAGFMFFSIRNQKKRAAAMNEMQSSLEPGARVQLHSGLFATVVDAGD 59 Query 61 ---DTIDLEIAPGVVTTWMKLAIRDRILPDDD 89 + + LE+APGVVT W +LAIR+ + P+DD Sbjct 60 GGNEVVKLELAPGVVTEWNRLAIREVVSPEDD 91 >gi|258653553|ref|YP_003202709.1| preprotein translocase subunit YajC [Nakamurella multipartita DSM 44233] gi|258556778|gb|ACV79720.1| preprotein translocase, YajC subunit [Nakamurella multipartita DSM 44233] Length=127 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 45/110 (41%), Positives = 69/110 (63%), Gaps = 7/110 (6%) Query 1 MESFVLFLPFLLIMGGFMYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIAD 60 MES +L + +G MYF+ ++Q+R A ++ + L PG RV TTSGL T+ A+AD Sbjct 1 MESMLLPILMFAALGALMYFSMKKQKRQAAAVKEMQNQLVPGSRVMTTSGLHGTVTAVAD 60 Query 61 DTIDLEIAPGVVTTWMKLAIRDRILP-------DDDIDEELNEDLDKDVD 103 DTI+LE+APG+ TTW++ A+R+ ++P +D +E E +D D D Sbjct 61 DTIELEVAPGMRTTWVRAAVREVVVPGPVEESYEDSYTDESTEIVDADPD 110 >gi|296139650|ref|YP_003646893.1| preprotein translocase subunit YajC [Tsukamurella paurometabola DSM 20162] gi|296027784|gb|ADG78554.1| preprotein translocase, YajC subunit [Tsukamurella paurometabola DSM 20162] Length=113 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 32/73 (44%), Positives = 52/73 (72%), Gaps = 0/73 (0%) Query 16 GFMYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIADDTIDLEIAPGVVTTW 75 GFM+F+ R+Q++ M T+ + ++L G V T++GL T+V + DDTI+LEIAPG+ TTW Sbjct 14 GFMFFSFRKQKKQMNETLQMQENLGVGTEVMTSTGLYGTVVGLGDDTIELEIAPGITTTW 73 Query 76 MKLAIRDRILPDD 88 ++ A+ I P++ Sbjct 74 VRRAVAKVITPEE 86 >gi|331697368|ref|YP_004333607.1| preprotein translocase subunit YajC [Pseudonocardia dioxanivorans CB1190] gi|326952057|gb|AEA25754.1| preprotein translocase, YajC subunit [Pseudonocardia dioxanivorans CB1190] Length=171 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 40/76 (53%), Positives = 54/76 (72%), Gaps = 5/76 (6%) Query 18 MYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIV-AIADDTIDLEIAPGVVTTWM 76 ++ + R+QRR MQ L SL+PG+ V TTSGL T+V A +DTIDLEIA GVVTTW+ Sbjct 17 IFLSGRKQRRNMQEMQRLQTSLEPGDVVTTTSGLRGTVVDASYEDTIDLEIADGVVTTWL 76 Query 77 KLAIRDRI----LPDD 88 + A+RD++ +PDD Sbjct 77 RAAVRDKVDTTTVPDD 92 >gi|226366283|ref|YP_002784066.1| protein-export membrane protein YajC [Rhodococcus opacus B4] gi|226244773|dbj|BAH55121.1| putative protein-export membrane protein YajC [Rhodococcus opacus B4] Length=125 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 34/68 (50%), Positives = 48/68 (71%), Gaps = 0/68 (0%) Query 18 MYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIADDTIDLEIAPGVVTTWMK 77 M+ RRQ++ L DSL G+R+ TT+GL T+VA+ D TI+LEIAPGVVTTW + Sbjct 16 MFLGIRRQKKEAAKVTALQDSLSVGDRILTTAGLHGTVVALGDQTIELEIAPGVVTTWSR 75 Query 78 LAIRDRIL 85 L +R++I+ Sbjct 76 LVVREQIV 83 >gi|256375829|ref|YP_003099489.1| preprotein translocase subunit YajC [Actinosynnema mirum DSM 43827] gi|255920132|gb|ACU35643.1| preprotein translocase, YajC subunit [Actinosynnema mirum DSM 43827] Length=133 Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 36/81 (45%), Positives = 58/81 (72%), Gaps = 2/81 (2%) Query 6 LFLPFLLIMGGF-MYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIADD-TI 63 L P LLI+ ++ ++R+Q++A +L +L+PG+RV TTSGL AT+ +D+ TI Sbjct 6 LMFPLLLILFAVPLFLSARKQKKAAAEQQELLSALEPGDRVMTTSGLFATVADASDEATI 65 Query 64 DLEIAPGVVTTWMKLAIRDRI 84 DLE+A GVVTTW++ A+R+++ Sbjct 66 DLEVADGVVTTWLRQAVREKV 86 >gi|25028328|ref|NP_738382.1| hypothetical protein CE1772 [Corynebacterium efficiens YS-314] gi|259507383|ref|ZP_05750283.1| preprotein translocase subunit YajC [Corynebacterium efficiens YS-314] gi|23493613|dbj|BAC18582.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|259165008|gb|EEW49562.1| preprotein translocase subunit YajC [Corynebacterium efficiens YS-314] Length=137 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 34/65 (53%), Positives = 48/65 (74%), Gaps = 0/65 (0%) Query 22 SRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIADDTIDLEIAPGVVTTWMKLAIR 81 SRRQR M L D+LQPG+RV TT+GL A +V++++D +DLEIAPGVVT+W K+++ Sbjct 21 SRRQRAKMAEIQKLQDALQPGDRVVTTAGLHAIVVSVSEDLVDLEIAPGVVTSWEKMSVV 80 Query 82 DRILP 86 + P Sbjct 81 RVVAP 85 >gi|325001437|ref|ZP_08122549.1| preprotein translocase, YajC subunit [Pseudonocardia sp. P1] Length=128 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 38/77 (50%), Positives = 53/77 (69%), Gaps = 1/77 (1%) Query 18 MYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIV-AIADDTIDLEIAPGVVTTWM 76 ++ R+QRR M T + +L+ G+ V TTSGL TIV A +DTIDLEIA GVVTTW+ Sbjct 30 LFLNGRKQRRQMAETQAMQQALEDGDVVVTTSGLRGTIVDASYEDTIDLEIADGVVTTWL 89 Query 77 KLAIRDRILPDDDIDEE 93 + AIR+++ D+ DE+ Sbjct 90 RAAIREKVAADEPADEQ 106 >gi|257055539|ref|YP_003133371.1| preprotein translocase, YajC subunit [Saccharomonospora viridis DSM 43017] gi|256585411|gb|ACU96544.1| preprotein translocase, YajC subunit [Saccharomonospora viridis DSM 43017] Length=125 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/89 (47%), Positives = 59/89 (67%), Gaps = 3/89 (3%) Query 18 MYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIADDT-IDLEIAPGVVTTWM 76 + ++R+Q++ M ++ +SL G+RV TTSGL AT+ +DDT IDLEIA GVVTTW+ Sbjct 18 LILSTRKQKKLMAEQQEMQNSLTEGDRVMTTSGLYATVADASDDTTIDLEIAEGVVTTWL 77 Query 77 KLAIRDRILP--DDDIDEELNEDLDKDVD 103 + A+R+R+ P DD D E D + D D Sbjct 78 RQAVRERVHPADADDNDVEALSDPESDSD 106 >gi|319947803|ref|ZP_08021997.1| preprotein translocase, YajC subunit [Dietzia cinnamea P4] gi|319438527|gb|EFV93453.1| preprotein translocase, YajC subunit [Dietzia cinnamea P4] Length=102 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 37/79 (47%), Positives = 54/79 (69%), Gaps = 1/79 (1%) Query 6 LFLPFLLI-MGGFMYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIADDTID 64 L LP ++I + M+ S +QRRAM+ ++ +SL G+ V TTSGL ATIVA+ DT++ Sbjct 5 LLLPLMIIVLLVLMFMQSSKQRRAMKELREMQESLTVGDHVLTTSGLHATIVAVEADTLE 64 Query 65 LEIAPGVVTTWMKLAIRDR 83 LEIAPG+ T W + IR++ Sbjct 65 LEIAPGIRTRWDRRVIREK 83 >gi|333919485|ref|YP_004493066.1| preprotein translocase subunit YajC [Amycolicicoccus subflavus DQS3-9A1] gi|333481706|gb|AEF40266.1| Preprotein translocase, YajC subunit [Amycolicicoccus subflavus DQS3-9A1] Length=125 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 35/67 (53%), Positives = 48/67 (72%), Gaps = 0/67 (0%) Query 23 RRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIADDTIDLEIAPGVVTTWMKLAIRD 82 RRQ++ + L D+L G+RV TTSG+ +VAIAD T+DLEIAPGVVTTW+++ +RD Sbjct 21 RRQKKEVDRQRSLQDALTIGDRVMTTSGMYGDVVAIADTTVDLEIAPGVVTTWLRVVVRD 80 Query 83 RILPDDD 89 + D D Sbjct 81 IVTEDTD 87 >gi|296393862|ref|YP_003658746.1| preprotein translocase subunit YajC [Segniliparus rotundus DSM 44985] gi|296181009|gb|ADG97915.1| preprotein translocase, YajC subunit [Segniliparus rotundus DSM 44985] Length=105 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 37/80 (47%), Positives = 49/80 (62%), Gaps = 4/80 (5%) Query 8 LPFLLIMGGFMYFA----SRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIADDTI 63 LP L+ +G M+F R + +AM DSL G+RV TTSGL + + D+T+ Sbjct 4 LPLLIGLGALMFFVLWWQGRSRNKAMAQFQSFQDSLVRGDRVVTTSGLRGEVREVRDETV 63 Query 64 DLEIAPGVVTTWMKLAIRDR 83 LEIAPGVVT W KLA+R+R Sbjct 64 LLEIAPGVVTEWTKLAVRER 83 >gi|300787171|ref|YP_003767462.1| preprotein translocase YajC subunit [Amycolatopsis mediterranei U32] gi|299796685|gb|ADJ47060.1| preprotein translocase YajC subunit [Amycolatopsis mediterranei U32] gi|340528670|gb|AEK43875.1| preprotein translocase, YajC subunit [Amycolatopsis mediterranei S699] Length=131 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 37/88 (43%), Positives = 62/88 (71%), Gaps = 1/88 (1%) Query 20 FASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIV-AIADDTIDLEIAPGVVTTWMKL 78 ++R+Q++ A +L SL PG+RV TTSGL T+ A D+TID+EIAPGVVTTW++L Sbjct 16 MSTRKQKKQQAAQQELQSSLAPGDRVMTTSGLYGTVADASGDNTIDIEIAPGVVTTWLRL 75 Query 79 AIRDRILPDDDIDEELNEDLDKDVDDVA 106 A+R+++ P + +E+ ++++ ++ A Sbjct 76 AVREKVEPVVETEEDAADEVEIPAEEPA 103 >gi|271967388|ref|YP_003341584.1| preprotein translocase subunit YajC [Streptosporangium roseum DSM 43021] gi|270510563|gb|ACZ88841.1| preprotein translocase subunit YajC, putative [Streptosporangium roseum DSM 43021] Length=121 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/77 (47%), Positives = 48/77 (63%), Gaps = 0/77 (0%) Query 17 FMYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIADDTIDLEIAPGVVTTWM 76 F + R QR+ Q + +SL G R+ TT+GL AT+VAI D + LEIAPGV T W+ Sbjct 17 FYFLLIRPQRKRQQEQAQMQNSLTSGTRIMTTTGLFATVVAIDADDVILEIAPGVETRWV 76 Query 77 KLAIRDRILPDDDIDEE 93 K AI + P DD+D+E Sbjct 77 KAAIGRVLTPVDDVDQE 93 >gi|111023847|ref|YP_706819.1| hypothetical protein RHA1_ro06895 [Rhodococcus jostii RHA1] gi|110823377|gb|ABG98661.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=96 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 31/51 (61%), Positives = 42/51 (83%), Gaps = 0/51 (0%) Query 35 LHDSLQPGERVHTTSGLEATIVAIADDTIDLEIAPGVVTTWMKLAIRDRIL 85 L DSL G+R+ TT+GL T+VA+ D+TIDLEIAPGVVTTW +L +R++I+ Sbjct 4 LQDSLSVGDRILTTAGLHGTVVALGDETIDLEIAPGVVTTWSRLVVREQIV 54 >gi|262202233|ref|YP_003273441.1| preprotein translocase subunit YajC [Gordonia bronchialis DSM 43247] gi|262085580|gb|ACY21548.1| preprotein translocase, YajC subunit [Gordonia bronchialis DSM 43247] Length=137 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 55/85 (65%), Gaps = 2/85 (2%) Query 6 LFLPFLLIMGGFMYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIV-AIADDTID 64 LF L ++ FM+ + R+Q++ M ++ DS+Q G R+ TSGL T++ A + D ID Sbjct 4 LFPVLLAMLAVFMFMSMRKQKKRMSEMQEMQDSVQTGTRIQLTSGLFGTVIDASSSDVID 63 Query 65 LEIAPGVVTTWMKLAIRDRILPDDD 89 +EIA GVVT W +LA+ R++P ++ Sbjct 64 VEIATGVVTRWNRLAVM-RVIPTEE 87 >gi|302527849|ref|ZP_07280191.1| predicted protein [Streptomyces sp. AA4] gi|302436744|gb|EFL08560.1| predicted protein [Streptomyces sp. AA4] Length=140 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 34/75 (46%), Positives = 53/75 (71%), Gaps = 7/75 (9%) Query 34 DLHDSLQPGERVHTTSGLEATIV-AIADDTIDLEIAPGVVTTWMKLAIRDRILPDDDIDE 92 ++ +S+ PG+RV TTSGL T+ ++ TID+EIAPGVVTTW++LA+R+++ P + +E Sbjct 34 EMQNSIAPGDRVMTTSGLYGTVADTSSETTIDIEIAPGVVTTWLRLAVREKVEPVVETEE 93 Query 93 ELNEDLDKDVDDVAG 107 ++D DVAG Sbjct 94 ------NEDPADVAG 102 >gi|295839918|ref|ZP_06826851.1| secreted protein [Streptomyces sp. SPB74] gi|197696747|gb|EDY43680.1| secreted protein [Streptomyces sp. SPB74] Length=152 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 37/104 (36%), Positives = 61/104 (59%), Gaps = 4/104 (3%) Query 3 SFVLFLPFLLIMGGFMYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIADDT 62 S V LPF+LI+G M+ +R ++ QA +++ +QPG V T G+ A + + +DT Sbjct 2 SLVSLLPFVLIIGA-MFLMTRSAKKKQQAAVNMRSEMQPGSGVRTIGGMYALVKEVGEDT 60 Query 63 IDLEIAPGVVTTWMKLAIRDRILPDDDIDEELN--EDLDKDVDD 104 + LE+APGV + K AI ++ D++ + +N EDLD + D Sbjct 61 VLLEVAPGVHARYAKNAI-GSVVGDEEWERIVNDGEDLDAVIPD 103 >gi|254391317|ref|ZP_05006521.1| secreted protein [Streptomyces clavuligerus ATCC 27064] gi|294811582|ref|ZP_06770225.1| secreted protein [Streptomyces clavuligerus ATCC 27064] gi|326440229|ref|ZP_08214963.1| secreted protein [Streptomyces clavuligerus ATCC 27064] gi|197705008|gb|EDY50820.1| secreted protein [Streptomyces clavuligerus ATCC 27064] gi|294324181|gb|EFG05824.1| secreted protein [Streptomyces clavuligerus ATCC 27064] Length=147 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/77 (39%), Positives = 47/77 (62%), Gaps = 1/77 (1%) Query 4 FVLFLPFLLIMGGFMYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIADDTI 63 V LPF+L++G M+ +R ++ Q D+ +S+QPG V T G+ AT+ + DDT+ Sbjct 3 LVALLPFVLLIG-LMFLMTRSAKKKQQQAADMRNSMQPGSGVRTIGGMYATVKEVHDDTV 61 Query 64 DLEIAPGVVTTWMKLAI 80 LE+APGV + K +I Sbjct 62 LLEVAPGVHAMYAKNSI 78 >gi|19552869|ref|NP_600871.1| preprotein translocase subunit YajC [Corynebacterium glutamicum ATCC 13032] gi|62390540|ref|YP_225942.1| preprotein translocase subunit YajC-like protein [Corynebacterium glutamicum ATCC 13032] gi|13346825|gb|AAK19841.1|AF331924_6 hypothetical protein [Corynebacterium glutamicum] gi|21324428|dbj|BAB99052.1| Preprotein translocase subunit YajC [Corynebacterium glutamicum ATCC 13032] gi|41325878|emb|CAF20041.1| Preprotein translocase subunit YajC homolog [Corynebacterium glutamicum ATCC 13032] Length=121 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 34/77 (45%), Positives = 52/77 (68%), Gaps = 2/77 (2%) Query 4 FVLFLPFLLIMGGFMYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIADDTI 63 F++ L + I+ F+ SRRQR M L DS+ PG+R+ TT+G AT+++ +T+ Sbjct 5 FLIILLAIFIVPTFLM--SRRQRARMTEIQKLQDSVVPGDRIVTTAGQHATVISTTAETV 62 Query 64 DLEIAPGVVTTWMKLAI 80 DLEIAPG+++T+ KLAI Sbjct 63 DLEIAPGMISTFEKLAI 79 >gi|145295779|ref|YP_001138600.1| hypothetical protein cgR_1704 [Corynebacterium glutamicum R] gi|140845699|dbj|BAF54698.1| hypothetical protein [Corynebacterium glutamicum R] gi|344044897|gb|EGV40571.1| preprotein translocase subunit YajC [Corynebacterium glutamicum S9114] Length=121 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 36/77 (47%), Positives = 51/77 (67%), Gaps = 1/77 (1%) Query 5 VLFLPFLL-IMGGFMYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIADDTI 63 +LFL LL I + SRRQR M L DS+ PG+R+ TT+G AT+++ +T+ Sbjct 3 ILFLIVLLAIFIVPTFLMSRRQRARMTEIQKLQDSVVPGDRIVTTAGQHATVISTTAETV 62 Query 64 DLEIAPGVVTTWMKLAI 80 DLEIAPG+++T+ KLAI Sbjct 63 DLEIAPGMISTFEKLAI 79 >gi|317508681|ref|ZP_07966336.1| preprotein translocase [Segniliparus rugosus ATCC BAA-974] gi|316253002|gb|EFV12417.1| preprotein translocase [Segniliparus rugosus ATCC BAA-974] Length=109 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/65 (50%), Positives = 43/65 (67%), Gaps = 0/65 (0%) Query 17 FMYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIADDTIDLEIAPGVVTTWM 76 FM++ R + RA++ HDSL G+RV TTSGL ++ + D TI LEIA GVVT W Sbjct 17 FMWWQGRSRNRALEQLQAFHDSLVAGDRVVTTSGLRGSVREVRDQTILLEIATGVVTEWT 76 Query 77 KLAIR 81 K+A+R Sbjct 77 KIAVR 81 >gi|302517989|ref|ZP_07270331.1| secreted protein [Streptomyces sp. SPB78] gi|318057100|ref|ZP_07975823.1| secreted protein [Streptomyces sp. SA3_actG] gi|318075774|ref|ZP_07983106.1| secreted protein [Streptomyces sp. SA3_actF] gi|333028333|ref|ZP_08456397.1| putative secreted protein [Streptomyces sp. Tu6071] gi|302426884|gb|EFK98699.1| secreted protein [Streptomyces sp. SPB78] gi|332748185|gb|EGJ78626.1| putative secreted protein [Streptomyces sp. Tu6071] Length=156 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 31/78 (40%), Positives = 46/78 (59%), Gaps = 1/78 (1%) Query 3 SFVLFLPFLLIMGGFMYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIADDT 62 S V LPF+LI+G M+ +R +R QA ++ +QPG V T G+ A + + +DT Sbjct 4 SLVSLLPFVLIIGA-MFLMTRSAKRKQQAAANMRSEMQPGSGVRTIGGMYALVKEVGEDT 62 Query 63 IDLEIAPGVVTTWMKLAI 80 + LE+APGV + K AI Sbjct 63 VLLEVAPGVHARYAKNAI 80 >gi|256832599|ref|YP_003161326.1| preprotein translocase, YajC subunit [Jonesia denitrificans DSM 20603] gi|256686130|gb|ACV09023.1| preprotein translocase, YajC subunit [Jonesia denitrificans DSM 20603] Length=129 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 33/94 (36%), Positives = 49/94 (53%), Gaps = 3/94 (3%) Query 10 FLLIMGGFMYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIADDTIDLEIAP 69 L++M M+F +R R+ + + DS+ PG+RV T SG TIV I DD + LE P Sbjct 7 LLVVMVAMMFFMTRGTRKRQKEMMSFRDSMAPGQRVMTASGYVGTIVEIGDDLVTLESEP 66 Query 70 GVVTTWMKLAIRDRILPDDDIDEELNEDLDKDVD 103 G T W+K AI P D + ++ + + D Sbjct 67 GSRTQWVKAAISK---PYDSVSTAMDTETHSETD 97 >gi|297626358|ref|YP_003688121.1| Preprotein translocase subunit YajC [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922123|emb|CBL56691.1| Preprotein translocase subunit YajC [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length=167 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 32/89 (36%), Positives = 51/89 (58%), Gaps = 0/89 (0%) Query 1 MESFVLFLPFLLIMGGFMYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIAD 60 M L + F+ ++ F + R QR+ + ++H++++PG RV TSG+ T+ AI D Sbjct 1 MNGPYLIIAFVALIALFYFMTIRPQRKQAEKQREMHNAIEPGTRVMLTSGIYGTVTAIGD 60 Query 61 DTIDLEIAPGVVTTWMKLAIRDRILPDDD 89 LE+APGV T +K AI + PDD+ Sbjct 61 KQFVLELAPGVDITVLKQAIVRVVQPDDE 89 >gi|172040617|ref|YP_001800331.1| preprotein translocase SecN subunit [Corynebacterium urealyticum DSM 7109] gi|171851921|emb|CAQ04897.1| preprotein translocase SecN subunit [Corynebacterium urealyticum DSM 7109] Length=130 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 37/115 (33%), Positives = 60/115 (53%), Gaps = 4/115 (3%) Query 1 MESFVLFLPFLLIMGGFMYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIAD 60 M S +L L +++ R+Q + M+ + DSLQPG V TSG++ + + D Sbjct 1 MNSLILIL-IVVVFIALPLLQIRKQNQRMKQIREFQDSLQPGMVVQMTSGIQGRVTHVGD 59 Query 61 DTIDLEIAPGVVTTWMKLAIR---DRILPDDDIDEELNEDLDKDVDDVAGERRVT 112 +IDLEI+P VVTTW + A+ + + P +E+L D + V G+ + T Sbjct 60 TSIDLEISPAVVTTWDRAAVLQAVNSVEPGSQQEEQLTNRPDSPAETVDGDVQNT 114 >gi|296270035|ref|YP_003652667.1| preprotein translocase subunit YajC [Thermobispora bispora DSM 43833] gi|296092822|gb|ADG88774.1| preprotein translocase, YajC subunit [Thermobispora bispora DSM 43833] Length=113 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 33/67 (50%), Positives = 46/67 (69%), Gaps = 1/67 (1%) Query 23 RRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIADDTIDLEIAPGVVTTWMKLAIRD 82 R QR+ Q I + +SL PG RV T++GL AT+VA+ D + LE+APGV T W+K AI Sbjct 25 RPQRKRQQELIQMQNSLTPGMRVMTSTGLFATVVALRGDDVILEVAPGVETRWVKAAI-A 83 Query 83 RILPDDD 89 RI+P ++ Sbjct 84 RIVPPEE 90 >gi|297195498|ref|ZP_06912896.1| secreted protein [Streptomyces pristinaespiralis ATCC 25486] gi|197722113|gb|EDY66021.1| secreted protein [Streptomyces pristinaespiralis ATCC 25486] Length=164 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/77 (39%), Positives = 46/77 (60%), Gaps = 1/77 (1%) Query 4 FVLFLPFLLIMGGFMYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVAIADDTI 63 + LPF++++G M+ +R ++ QA ++ D +QPG V T GL AT+ + DDT+ Sbjct 9 ILTLLPFIVLIGA-MFLMTRSAKKKQQAAANMRDQMQPGTGVRTIGGLYATVKEVNDDTV 67 Query 64 DLEIAPGVVTTWMKLAI 80 LE APGV + K AI Sbjct 68 LLEAAPGVHLVFAKNAI 84 >gi|343924325|ref|ZP_08763876.1| putative protein-export membrane protein [Gordonia alkanivorans NBRC 16433] gi|343765759|dbj|GAA10802.1| putative protein-export membrane protein [Gordonia alkanivorans NBRC 16433] Length=128 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/75 (42%), Positives = 49/75 (66%), Gaps = 2/75 (2%) Query 16 GFMYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIV-AIADDTIDLEIAPGVVTT 74 GFM+ + R+Q++ D+ +S+ G R+ TSGL T++ A + D +D+EIA GVVT Sbjct 15 GFMFLSMRKQKKRAAEMQDMQNSVSTGTRIQLTSGLFGTVIDAASSDFVDVEIATGVVTR 74 Query 75 WMKLAIRDRILPDDD 89 W +LAI R++P D+ Sbjct 75 WNRLAIM-RVIPTDE 88 >gi|284991598|ref|YP_003410152.1| preprotein translocase subunit YajC [Geodermatophilus obscurus DSM 43160] gi|284064843|gb|ADB75781.1| preprotein translocase, YajC subunit [Geodermatophilus obscurus DSM 43160] Length=107 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/103 (36%), Positives = 59/103 (58%), Gaps = 16/103 (15%) Query 1 MESF---VLFLPFLLIMGGFMYFASRRQRRAMQATIDLHDSLQPGERVHTTSGLEATIVA 57 ME F +L L F+L++ +R+++++ + L +SL PG V TT+GL T+ A Sbjct 1 MELFPLVILVLAFVLLI----VLPARQRKKSQEQQRMLQESLTPGTPVMTTAGLHGTVAA 56 Query 58 IADDTIDLEIAPGVVTTWMKLAIRD---------RILPDDDID 91 + + T+DLEIAPGVV T+ + A+ + +LP DD D Sbjct 57 LGEGTVDLEIAPGVVVTFARQAVLEIRKPAVADGPVLPGDDAD 99 Lambda K H 0.321 0.139 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 131043835296 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40