BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2593c
Length=196
Score E
Sequences producing significant alignments: (Bits) Value
gi|229597664|pdb|2ZTC|A Chain A, Mtruva Form Ii >gi|229597665|pd... 380 5e-104
gi|15609730|ref|NP_217109.1| Holliday junction DNA helicase RuvA... 380 8e-104
gi|289751217|ref|ZP_06510595.1| holliday junction DNA helicase r... 376 7e-103
gi|118617340|ref|YP_905672.1| Holliday junction DNA helicase Ruv... 319 2e-85
gi|296170845|ref|ZP_06852406.1| crossover junction ATP-dependent... 309 2e-82
gi|41407135|ref|NP_959971.1| Holliday junction DNA helicase moto... 305 2e-81
gi|108799233|ref|YP_639430.1| Holliday junction DNA helicase Ruv... 299 1e-79
gi|333991019|ref|YP_004523633.1| Holliday junction DNA helicase ... 294 4e-78
gi|118467715|ref|YP_887263.1| Holliday junction DNA helicase Ruv... 288 3e-76
gi|342858580|ref|ZP_08715235.1| Holliday junction DNA helicase R... 287 5e-76
gi|15827159|ref|NP_301422.1| Holliday junction DNA helicase RuvA... 287 5e-76
gi|6729740|pdb|1BVS|A Chain A, Ruva Complexed To A Holliday Junc... 281 4e-74
gi|120403560|ref|YP_953389.1| Holliday junction DNA helicase Ruv... 278 3e-73
gi|226366281|ref|YP_002784064.1| Holliday junction DNA helicase ... 276 9e-73
gi|169629967|ref|YP_001703616.1| Holliday junction DNA helicase ... 276 1e-72
gi|145224407|ref|YP_001135085.1| Holliday junction DNA helicase ... 275 2e-72
gi|240173173|ref|ZP_04751831.1| Holliday junction DNA helicase R... 273 7e-72
gi|111023845|ref|YP_706817.1| Holliday junction DNA helicase Ruv... 273 1e-71
gi|312139494|ref|YP_004006830.1| holliday junction DNA helicase ... 266 1e-69
gi|325672616|ref|ZP_08152312.1| crossover junction ATP-dependent... 266 1e-69
gi|229491976|ref|ZP_04385793.1| holliday junction DNA helicase R... 263 1e-68
gi|54025666|ref|YP_119908.1| Holliday junction DNA helicase RuvA... 258 2e-67
gi|226306411|ref|YP_002766371.1| Holliday junction DNA helicase ... 256 2e-66
gi|257055537|ref|YP_003133369.1| Holliday junction DNA helicase ... 218 3e-55
gi|317508678|ref|ZP_07966333.1| Holliday junction DNA helicase R... 215 3e-54
gi|343924327|ref|ZP_08763878.1| Holliday junction ATP-dependent ... 214 5e-54
gi|331697370|ref|YP_004333609.1| Holliday junction ATP-dependent... 212 3e-53
gi|262202231|ref|YP_003273439.1| Holliday junction DNA helicase ... 212 3e-53
gi|256375826|ref|YP_003099486.1| Holliday junction DNA helicase ... 209 2e-52
gi|333919483|ref|YP_004493064.1| Holliday junction ATP-dependent... 207 9e-52
gi|300787173|ref|YP_003767464.1| holliday junction DNA helicase ... 202 3e-50
gi|302527851|ref|ZP_07280193.1| Holliday junction DNA helicase R... 198 4e-49
gi|296393859|ref|YP_003658743.1| Holliday junction DNA helicase ... 197 7e-49
gi|326382127|ref|ZP_08203819.1| Holliday junction DNA helicase R... 194 8e-48
gi|134098596|ref|YP_001104257.1| Holliday junction DNA helicase ... 192 2e-47
gi|227833242|ref|YP_002834949.1| holliday junction DNA helicase ... 182 2e-44
gi|225021302|ref|ZP_03710494.1| hypothetical protein CORMATOL_01... 182 2e-44
gi|254821998|ref|ZP_05226999.1| Holliday junction DNA helicase R... 182 3e-44
gi|305681259|ref|ZP_07404066.1| Holliday junction DNA helicase R... 181 5e-44
gi|269795058|ref|YP_003314513.1| Holliday junction DNA helicase ... 181 7e-44
gi|255325096|ref|ZP_05366202.1| holliday junction DNA helicase R... 179 3e-43
gi|311739557|ref|ZP_07713392.1| crossover junction ATP-dependent... 178 4e-43
gi|311742330|ref|ZP_07716139.1| crossover junction ATP-dependent... 174 7e-42
gi|300858594|ref|YP_003783577.1| holliday junction resolvasome h... 173 9e-42
gi|332670539|ref|YP_004453547.1| Holliday junction DNA helicase ... 173 1e-41
gi|319947801|ref|ZP_08021995.1| Holliday junction DNA helicase R... 172 2e-41
gi|296129641|ref|YP_003636891.1| Holliday junction DNA helicase ... 171 4e-41
gi|227504981|ref|ZP_03935030.1| Holliday junction DNA helicase m... 171 5e-41
gi|269219375|ref|ZP_06163229.1| holliday junction DNA helicase R... 170 9e-41
gi|296139644|ref|YP_003646887.1| Holliday junction DNA helicase ... 170 1e-40
>gi|229597664|pdb|2ZTC|A Chain A, Mtruva Form Ii
gi|229597665|pdb|2ZTC|B Chain B, Mtruva Form Ii
gi|229597666|pdb|2ZTC|C Chain C, Mtruva Form Ii
gi|229597667|pdb|2ZTC|D Chain D, Mtruva Form Ii
gi|229597668|pdb|2ZTD|A Chain A, Mtruva Form Iii
gi|229597669|pdb|2ZTD|B Chain B, Mtruva Form Iii
gi|229597670|pdb|2ZTE|A Chain A, Mtruva Form Iv
Length=212
Score = 380 bits (976), Expect = 5e-104, Method: Compositional matrix adjust.
Identities = 196/196 (100%), Positives = 196/196 (100%), Gaps = 0/196 (0%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY
Sbjct 17 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 76
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA
Sbjct 77 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 136
Query 121 ERMVLELRDKVGVAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAANHDAT 180
ERMVLELRDKVGVAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAANHDAT
Sbjct 137 ERMVLELRDKVGVAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAANHDAT 196
Query 181 TSSALRSALSLLGKAR 196
TSSALRSALSLLGKAR
Sbjct 197 TSSALRSALSLLGKAR 212
>gi|15609730|ref|NP_217109.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
H37Rv]
gi|15842133|ref|NP_337170.1| Holliday junction DNA helicase RuvA [Mycobacterium tuberculosis
CDC1551]
gi|31793777|ref|NP_856270.1| Holliday junction DNA helicase RuvA [Mycobacterium bovis AF2122/97]
87 more sequence titles
Length=196
Score = 380 bits (975), Expect = 8e-104, Method: Compositional matrix adjust.
Identities = 196/196 (100%), Positives = 196/196 (100%), Gaps = 0/196 (0%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY
Sbjct 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA
Sbjct 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
Query 121 ERMVLELRDKVGVAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAANHDAT 180
ERMVLELRDKVGVAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAANHDAT
Sbjct 121 ERMVLELRDKVGVAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAANHDAT 180
Query 181 TSSALRSALSLLGKAR 196
TSSALRSALSLLGKAR
Sbjct 181 TSSALRSALSLLGKAR 196
>gi|289751217|ref|ZP_06510595.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
T92]
gi|289691804|gb|EFD59233.1| holliday junction DNA helicase ruvA [Mycobacterium tuberculosis
T92]
Length=196
Score = 376 bits (966), Expect = 7e-103, Method: Compositional matrix adjust.
Identities = 195/196 (99%), Positives = 195/196 (99%), Gaps = 0/196 (0%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY
Sbjct 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GFPDGETRDLFLTLL VSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA
Sbjct 61 GFPDGETRDLFLTLLLVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
Query 121 ERMVLELRDKVGVAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAANHDAT 180
ERMVLELRDKVGVAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAANHDAT
Sbjct 121 ERMVLELRDKVGVAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAANHDAT 180
Query 181 TSSALRSALSLLGKAR 196
TSSALRSALSLLGKAR
Sbjct 181 TSSALRSALSLLGKAR 196
>gi|118617340|ref|YP_905672.1| Holliday junction DNA helicase RuvA [Mycobacterium ulcerans Agy99]
gi|183982124|ref|YP_001850415.1| Holliday junction DNA helicase RuvA [Mycobacterium marinum M]
gi|166230572|sp|A0PPD2.1|RUVA_MYCUA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
gi|229560107|sp|B2HN62.1|RUVA_MYCMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
gi|118569450|gb|ABL04201.1| Holliday junction DNA helicase RuvA [Mycobacterium ulcerans Agy99]
gi|183175450|gb|ACC40560.1| Holliday junction DNA helicase RuvA [Mycobacterium marinum M]
Length=197
Score = 319 bits (817), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 167/197 (85%), Positives = 180/197 (92%), Gaps = 1/197 (0%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MI+S+RGEVLEVALDHVVIEAAGVGYRVNATP+TLATLRQGT+ARLITAMIVREDSMTLY
Sbjct 1 MISSLRGEVLEVALDHVVIEAAGVGYRVNATPSTLATLRQGTDARLITAMIVREDSMTLY 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GF DGETRDLFLTLLSVSGVGPRLAMA L+VHDA LRQ LADG+V ALTRVPGIGKRGA
Sbjct 61 GFVDGETRDLFLTLLSVSGVGPRLAMATLSVHDANGLRQALADGDVTALTRVPGIGKRGA 120
Query 121 ERMVLELRDKVGVAATGG-ALSTNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAANHDA 179
ERMV+ELRDKVG A + A + NGH VR+PVVEALVGLGFAAKQAEEATD VLA + +A
Sbjct 121 ERMVVELRDKVGPAGSAATAPAVNGHTVRAPVVEALVGLGFAAKQAEEATDKVLAGDGEA 180
Query 180 TTSSALRSALSLLGKAR 196
TTSSALR+ALSLLGKAR
Sbjct 181 TTSSALRAALSLLGKAR 197
>gi|296170845|ref|ZP_06852406.1| crossover junction ATP-dependent DNA helicase RuvA [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295894501|gb|EFG74242.1| crossover junction ATP-dependent DNA helicase RuvA [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length=197
Score = 309 bits (791), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 167/197 (85%), Positives = 174/197 (89%), Gaps = 1/197 (0%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MIASVRGEVL VALDH VIEAAGVGYRVNATP+TLATLR GTEARLITAM+VREDSMTLY
Sbjct 1 MIASVRGEVLGVALDHAVIEAAGVGYRVNATPSTLATLRTGTEARLITAMVVREDSMTLY 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GF D ETRDLFLTLL+VSGVGPRLAMA LAVHDA ALRQVL DG+V ALTRVPGIGKRGA
Sbjct 61 GFTDAETRDLFLTLLTVSGVGPRLAMATLAVHDAAALRQVLHDGDVTALTRVPGIGKRGA 120
Query 121 ERMVLELRDKVGVAATGGALS-TNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAANHDA 179
ERMVLELRDKVG AA G S NGHAVR PVVEALVGLGFA KQAEEATD VLA DA
Sbjct 121 ERMVLELRDKVGAAAAAGGASVVNGHAVRGPVVEALVGLGFAVKQAEEATDKVLATEQDA 180
Query 180 TTSSALRSALSLLGKAR 196
TTS ALR+ALSLLGK++
Sbjct 181 TTSGALRAALSLLGKSK 197
>gi|41407135|ref|NP_959971.1| Holliday junction DNA helicase motor protein [Mycobacterium avium
subsp. paratuberculosis K-10]
gi|118465009|ref|YP_882656.1| Holliday junction DNA helicase RuvA [Mycobacterium avium 104]
gi|81414560|sp|Q741Q1.1|RUVA_MYCPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
gi|166230566|sp|A0QIB8.1|RUVA_MYCA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
gi|41395486|gb|AAS03354.1| RuvA [Mycobacterium avium subsp. paratuberculosis K-10]
gi|118166296|gb|ABK67193.1| holliday junction DNA helicase RuvA [Mycobacterium avium 104]
gi|336461534|gb|EGO40402.1| Holliday junction DNA helicase, RuvA subunit [Mycobacterium avium
subsp. paratuberculosis S397]
Length=199
Score = 305 bits (782), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 167/199 (84%), Positives = 176/199 (89%), Gaps = 3/199 (1%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MIASVRGEVLEVALDH VIEAAGVGYRVNATP+TL+TLR GT+ARLITAMIVREDSMTLY
Sbjct 1 MIASVRGEVLEVALDHAVIEAAGVGYRVNATPSTLSTLRTGTQARLITAMIVREDSMTLY 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GF D ETRDLFLTLLSVSGVGPRLAMA LAVHDA ALRQ L DG+VAALTRVPGIGKRGA
Sbjct 61 GFTDAETRDLFLTLLSVSGVGPRLAMATLAVHDAGALRQALHDGDVAALTRVPGIGKRGA 120
Query 121 ERMVLELRDKVGVAATGGALST---NGHAVRSPVVEALVGLGFAAKQAEEATDTVLAANH 177
ERMVLELRDK+G A GA + NGHAVR PVVEALVGLGFAAKQAEEATD VLAA
Sbjct 121 ERMVLELRDKIGAAGAAGAPAGAARNGHAVRGPVVEALVGLGFAAKQAEEATDKVLAAEP 180
Query 178 DATTSSALRSALSLLGKAR 196
+A TS ALR+ALSLLGK+R
Sbjct 181 EAGTSGALRAALSLLGKSR 199
>gi|108799233|ref|YP_639430.1| Holliday junction DNA helicase RuvA [Mycobacterium sp. MCS]
gi|119868349|ref|YP_938301.1| Holliday junction DNA helicase RuvA [Mycobacterium sp. KMS]
gi|126434891|ref|YP_001070582.1| Holliday junction DNA helicase RuvA [Mycobacterium sp. JLS]
6 more sequence titles
Length=196
Score = 299 bits (765), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 153/195 (79%), Positives = 172/195 (89%), Gaps = 1/195 (0%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MIASVRGEV+++ALDH VIEAAGVGY+V ATP+TLATLR+GTE+RL+TAMIVREDSMTLY
Sbjct 1 MIASVRGEVIDIALDHAVIEAAGVGYKVMATPSTLATLRRGTESRLVTAMIVREDSMTLY 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GF D + RDLF TLL VSGVGP++A+A LAV+DAP LRQ LADG+V ALTRVPGIGKRGA
Sbjct 61 GFADADARDLFGTLLGVSGVGPKIALATLAVYDAPTLRQALADGDVTALTRVPGIGKRGA 120
Query 121 ERMVLELRDKVGVAATG-GALSTNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAANHDA 179
ERMVLELRDK+G TG G + GHAVR PVVEALVGLGFAAKQAEEA D VLAA+ DA
Sbjct 121 ERMVLELRDKIGPVTTGAGVTAVGGHAVRGPVVEALVGLGFAAKQAEEACDKVLAADPDA 180
Query 180 TTSSALRSALSLLGK 194
TTSSALR+ALS+LGK
Sbjct 181 TTSSALRAALSMLGK 195
>gi|333991019|ref|YP_004523633.1| Holliday junction DNA helicase RuvA [Mycobacterium sp. JDM601]
gi|333486987|gb|AEF36379.1| Holliday junction DNA helicase RuvA [Mycobacterium sp. JDM601]
Length=196
Score = 294 bits (753), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 152/197 (78%), Positives = 177/197 (90%), Gaps = 2/197 (1%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MIASVRGEV+++ALDHVVIEAAGVGY+V ATPATL+TLR+GTE+RLI AMIVREDSMTLY
Sbjct 1 MIASVRGEVIDIALDHVVIEAAGVGYKVMATPATLSTLRRGTESRLIIAMIVREDSMTLY 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GFPD + RDLFLTL+ VSG+GP++A+AALAV+DA ALR+VLADG+V ALTRVPGIGKRGA
Sbjct 61 GFPDADARDLFLTLIGVSGIGPKIALAALAVYDATALRRVLADGDVTALTRVPGIGKRGA 120
Query 121 ERMVLELRDKVG-VAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAANHDA 179
ER+VLELRDK+G VAA GA+ NGH VR+PVVEALVGLGFAAKQAE+A D VLA + DA
Sbjct 121 ERLVLELRDKIGPVAAPDGAV-FNGHVVRAPVVEALVGLGFAAKQAEDAIDKVLAESPDA 179
Query 180 TTSSALRSALSLLGKAR 196
+TS ALR+ALS LGK +
Sbjct 180 STSDALRTALSRLGKIK 196
>gi|118467715|ref|YP_887263.1| Holliday junction DNA helicase RuvA [Mycobacterium smegmatis
str. MC2 155]
gi|166230568|sp|A0QWH5.1|RUVA_MYCS2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
gi|118169002|gb|ABK69898.1| holliday junction DNA helicase RuvA [Mycobacterium smegmatis
str. MC2 155]
Length=195
Score = 288 bits (737), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 153/194 (79%), Positives = 173/194 (90%), Gaps = 0/194 (0%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MIASVRGEV+++ALDH VIEAAGVGY+V ATP+TLATLR+GTEARLITAMIVREDSMTLY
Sbjct 1 MIASVRGEVIDIALDHAVIEAAGVGYKVMATPSTLATLRRGTEARLITAMIVREDSMTLY 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GF DG+ RDLFLTLL VSGVGP++A+A LAV+D ALRQ LADG+V ALTRVPGIGKRGA
Sbjct 61 GFVDGDARDLFLTLLGVSGVGPKIALATLAVYDPQALRQALADGDVTALTRVPGIGKRGA 120
Query 121 ERMVLELRDKVGVAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAANHDAT 180
ERMVLELRDK+G + GG + GHA+R PVVEALVGLGFAAKQAEEATD VLA + +AT
Sbjct 121 ERMVLELRDKIGPVSAGGGAAVGGHAIRGPVVEALVGLGFAAKQAEEATDKVLANDPEAT 180
Query 181 TSSALRSALSLLGK 194
TSSALR+ALS+LGK
Sbjct 181 TSSALRAALSMLGK 194
>gi|342858580|ref|ZP_08715235.1| Holliday junction DNA helicase RuvA [Mycobacterium colombiense
CECT 3035]
gi|342134284|gb|EGT87464.1| Holliday junction DNA helicase RuvA [Mycobacterium colombiense
CECT 3035]
Length=199
Score = 287 bits (735), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 153/182 (85%), Positives = 159/182 (88%), Gaps = 4/182 (2%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MIASVRGEVLEVALDH VIEAAGVGYRVNATP+TL+TLR G+EARLITAMIVREDSMTLY
Sbjct 1 MIASVRGEVLEVALDHAVIEAAGVGYRVNATPSTLSTLRTGSEARLITAMIVREDSMTLY 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GF D +TRDLFLTLLSVSGVGPRLAMA LAVHDA ALRQ L D +V ALTRVPGIGKR A
Sbjct 61 GFTDTDTRDLFLTLLSVSGVGPRLAMATLAVHDAGALRQALHDSDVTALTRVPGIGKRSA 120
Query 121 ERMVLELRDKVGVA-ATGGA---LSTNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAAN 176
ERMVLELRDKVGV ATGGA + NGHAVR PVVEALVGLGFA KQAEEATD VLA
Sbjct 121 ERMVLELRDKVGVGVATGGASPGAAHNGHAVRGPVVEALVGLGFAVKQAEEATDKVLATE 180
Query 177 HD 178
HD
Sbjct 181 HD 182
>gi|15827159|ref|NP_301422.1| Holliday junction DNA helicase RuvA [Mycobacterium leprae TN]
gi|221229637|ref|YP_002503053.1| Holliday junction DNA helicase RuvA [Mycobacterium leprae Br4923]
gi|730695|sp|P40832.1|RUVA_MYCLE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
gi|254767378|sp|B8ZUI1.1|RUVA_MYCLB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
gi|466820|gb|AAA17095.1| ruvA [Mycobacterium leprae]
gi|13092707|emb|CAC29990.1| Holliday junction DNA helicase component [Mycobacterium leprae]
gi|219932744|emb|CAR70575.1| Holliday junction DNA helicase component [Mycobacterium leprae
Br4923]
Length=203
Score = 287 bits (735), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 156/203 (77%), Positives = 171/203 (85%), Gaps = 7/203 (3%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MI SVRGEVLEVALDH VIEAAG+GYRVNATP+ LATLRQG++ARL+TAM+VREDSMTLY
Sbjct 1 MIFSVRGEVLEVALDHAVIEAAGIGYRVNATPSALATLRQGSQARLVTAMVVREDSMTLY 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GF D E RDLFL LLSVSGVGPRLAMA LAVHDA ALRQ LAD +VA+LTRVPGIGKRGA
Sbjct 61 GFSDAENRDLFLALLSVSGVGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGKRGA 120
Query 121 ERMVLELRDKVG-VAATGGALST--NGHAVRSPVVEALVGLGFAAKQAEEATDTV----L 173
ER+VLELRDKVG V A+G + T +G+AVR VVEALVGLGFAAKQAEEATD V L
Sbjct 121 ERIVLELRDKVGPVGASGLTVGTAADGNAVRGSVVEALVGLGFAAKQAEEATDQVLDGEL 180
Query 174 AANHDATTSSALRSALSLLGKAR 196
+ TSSALR+ALSLLGK R
Sbjct 181 GKDGAVATSSALRAALSLLGKTR 203
>gi|6729740|pdb|1BVS|A Chain A, Ruva Complexed To A Holliday Junction.
gi|6729741|pdb|1BVS|B Chain B, Ruva Complexed To A Holliday Junction.
gi|6729742|pdb|1BVS|C Chain C, Ruva Complexed To A Holliday Junction.
gi|6729743|pdb|1BVS|D Chain D, Ruva Complexed To A Holliday Junction.
gi|6729744|pdb|1BVS|E Chain E, Ruva Complexed To A Holliday Junction.
gi|6729745|pdb|1BVS|F Chain F, Ruva Complexed To A Holliday Junction.
gi|6729746|pdb|1BVS|G Chain G, Ruva Complexed To A Holliday Junction.
gi|6729747|pdb|1BVS|H Chain H, Ruva Complexed To A Holliday Junction.
Length=203
Score = 281 bits (718), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 153/203 (76%), Positives = 169/203 (84%), Gaps = 7/203 (3%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MI SVRGEVLEVALDH VIEAAG+GYRVNATP+ LATL QG++ARL+TAM+VREDSMTLY
Sbjct 1 MIFSVRGEVLEVALDHAVIEAAGIGYRVNATPSALATLNQGSQARLVTAMVVREDSMTLY 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GF D E RDLFL LLSVSGVGPRLAMA LAVHDA ALRQ LAD +VA+LTRVPGIG+RGA
Sbjct 61 GFSDAENRDLFLALLSVSGVGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGRRGA 120
Query 121 ERMVLELRDKVG-VAATGGALST--NGHAVRSPVVEALVGLGFAAKQAEEATDTV----L 173
ER+VLEL DKVG V A+G + T +G+AVR VVEALVGLGFAAKQAEEATD V L
Sbjct 121 ERIVLELADKVGPVGASGLTVGTAADGNAVRGSVVEALVGLGFAAKQAEEATDQVLDGEL 180
Query 174 AANHDATTSSALRSALSLLGKAR 196
+ TSSALR+ALSLLGK R
Sbjct 181 GKDGAVATSSALRAALSLLGKTR 203
>gi|120403560|ref|YP_953389.1| Holliday junction DNA helicase RuvA [Mycobacterium vanbaalenii
PYR-1]
gi|166230573|sp|A1T883.1|RUVA_MYCVP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
gi|119956378|gb|ABM13383.1| DNA recombination protein RuvA, domain I [Mycobacterium vanbaalenii
PYR-1]
Length=195
Score = 278 bits (711), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 139/194 (72%), Positives = 163/194 (85%), Gaps = 0/194 (0%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MIA+VRGEVL++ALDHVVIEAAGVGY+V ATPATLATLR+G EARLITAMIVREDSMTLY
Sbjct 1 MIAAVRGEVLDIALDHVVIEAAGVGYKVMATPATLATLRRGAEARLITAMIVREDSMTLY 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GF D + R+LFLTLL VSG+GP +A+ ALA++D P LRQ + DG+V ALTR+P +GK+ A
Sbjct 61 GFADSDARNLFLTLLGVSGIGPSIALGALAMYDGPTLRQAIGDGDVTALTRIPKVGKKTA 120
Query 121 ERMVLELRDKVGVAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAANHDAT 180
E +VL LRDKVG + + G S GH +R PVVEALVGLGFA KQAEEATD VLA +AT
Sbjct 121 ELLVLTLRDKVGTSTSAGVASAGGHGIRGPVVEALVGLGFAQKQAEEATDKVLANEPEAT 180
Query 181 TSSALRSALSLLGK 194
TSSALR+ALS+LGK
Sbjct 181 TSSALRAALSMLGK 194
>gi|226366281|ref|YP_002784064.1| Holliday junction DNA helicase RuvA [Rhodococcus opacus B4]
gi|254767383|sp|C1B4D0.1|RUVA_RHOOB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
gi|226244771|dbj|BAH55119.1| Holliday junction DNA helicase RuvA [Rhodococcus opacus B4]
Length=200
Score = 276 bits (707), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 148/200 (74%), Positives = 169/200 (85%), Gaps = 4/200 (2%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MIASVRGEVLE+ALDH VIE+AGVGYRVNATPATL L++GTEARL+TAMIVREDSMTLY
Sbjct 1 MIASVRGEVLEIALDHAVIESAGVGYRVNATPATLGGLQRGTEARLVTAMIVREDSMTLY 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GFPD E+++LF L +VSGVGPRLAMA LAV + ALR LA+GNV ALTRVPGIGKRGA
Sbjct 61 GFPDSESKELFGLLQTVSGVGPRLAMATLAVLEPEALRSALAEGNVTALTRVPGIGKRGA 120
Query 121 ERMVLELRDKV-GVAATGGAL---STNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAAN 176
ERMV+ELRDKV V +T GA+ + G +VR +VEALVGLGF AKQAE+ATD+VLA
Sbjct 121 ERMVVELRDKVDAVGSTSGAVPLGAGGGGSVRDQIVEALVGLGFPAKQAEQATDSVLAEA 180
Query 177 HDATTSSALRSALSLLGKAR 196
++TTSSALRSALSLLGK R
Sbjct 181 PESTTSSALRSALSLLGKTR 200
>gi|169629967|ref|YP_001703616.1| Holliday junction DNA helicase RuvA [Mycobacterium abscessus
ATCC 19977]
gi|229560105|sp|B1MCJ1.1|RUVA_MYCA9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
gi|169241934|emb|CAM62962.1| Holliday junction DNA helicase RuvA [Mycobacterium abscessus]
Length=202
Score = 276 bits (706), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 149/202 (74%), Positives = 167/202 (83%), Gaps = 6/202 (2%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MIASV GEV+++ALDHVVIEAAGVGYRVNATPATL+TLR+GT+ RLITAMIVREDSMTLY
Sbjct 1 MIASVNGEVIDIALDHVVIEAAGVGYRVNATPATLSTLRRGTQIRLITAMIVREDSMTLY 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GF D + RDLF TLL VSGVGP++AMA LAV+DAP LRQ LADG+VAALTRVPGIGKRGA
Sbjct 61 GFTDTDARDLFTTLLGVSGVGPKIAMATLAVYDAPTLRQALADGDVAALTRVPGIGKRGA 120
Query 121 ERMVLELRDKVGVAATGGALSTNGHA--VRSPVVEALVGLGFAAKQAEEATDTVLAANHD 178
ER+VLELR+KV A G G A VRS VVEAL+GLGFAAKQAE+ATDTVLA ++
Sbjct 121 ERLVLELREKVAAAPGGTTELGRGTASLVRSQVVEALIGLGFAAKQAEQATDTVLAQDNP 180
Query 179 ATT----SSALRSALSLLGKAR 196
T S LRSAL+LLGK R
Sbjct 181 GDTGADVSGVLRSALALLGKTR 202
>gi|145224407|ref|YP_001135085.1| Holliday junction DNA helicase RuvA [Mycobacterium gilvum PYR-GCK]
gi|315444739|ref|YP_004077618.1| Holliday junction DNA helicase, Ruvsubunit alpha [Mycobacterium
sp. Spyr1]
gi|189045758|sp|A4TBQ6.1|RUVA_MYCGI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
gi|145216893|gb|ABP46297.1| DNA recombination protein RuvA, domain I [Mycobacterium gilvum
PYR-GCK]
gi|315263042|gb|ADT99783.1| Holliday junction DNA helicase, RuvA subunit [Mycobacterium sp.
Spyr1]
Length=195
Score = 275 bits (704), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 137/194 (71%), Positives = 163/194 (85%), Gaps = 0/194 (0%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MIASVRGEVL++ALDHVVIEAAGVGY+V ATPATLATLR+G+EARLITAMIVREDS TLY
Sbjct 1 MIASVRGEVLDIALDHVVIEAAGVGYKVMATPATLATLRRGSEARLITAMIVREDSQTLY 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GF D + RDLFLTLL VSG+GP +A+ ALA++D P LRQ + DG++ ALTR+P +GK+ A
Sbjct 61 GFADSDARDLFLTLLGVSGIGPSIALGALAMYDGPTLRQAIGDGDLTALTRIPKVGKKTA 120
Query 121 ERMVLELRDKVGVAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAANHDAT 180
E + L LRDKVG + + G + GH +R PVVEALVGLGFA KQAEEATD VLA + +AT
Sbjct 121 ELLALTLRDKVGSSTSSGVAAAGGHGIRGPVVEALVGLGFAVKQAEEATDKVLANDPEAT 180
Query 181 TSSALRSALSLLGK 194
TSSALR+ALS+LGK
Sbjct 181 TSSALRAALSMLGK 194
>gi|240173173|ref|ZP_04751831.1| Holliday junction DNA helicase RuvA [Mycobacterium kansasii ATCC
12478]
Length=195
Score = 273 bits (699), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 167/196 (86%), Positives = 176/196 (90%), Gaps = 1/196 (0%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MIA VRGEVLEVALDHVVIEAAGVGYRVNATP+TLATLRQGTEARL+TAMIVREDSMTLY
Sbjct 1 MIAGVRGEVLEVALDHVVIEAAGVGYRVNATPSTLATLRQGTEARLVTAMIVREDSMTLY 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GF D ETRDLFLTLLSVSGVGPRLAMA LAVHDA ALR+ LADG+VAALTRVPGIGKRGA
Sbjct 61 GFGDRETRDLFLTLLSVSGVGPRLAMATLAVHDAAALRRALADGDVAALTRVPGIGKRGA 120
Query 121 ERMVLELRDKVGVAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAANHDAT 180
ERMVLELRDKV A A + NG+AVR+PVVEALVGLGFAAKQAEEATD VLAA T
Sbjct 121 ERMVLELRDKV-GPAGAAAPALNGNAVRTPVVEALVGLGFAAKQAEEATDKVLAAEPGTT 179
Query 181 TSSALRSALSLLGKAR 196
TS ALR+AL+LLGKAR
Sbjct 180 TSGALRAALALLGKAR 195
>gi|111023845|ref|YP_706817.1| Holliday junction DNA helicase RuvA [Rhodococcus jostii RHA1]
gi|122955049|sp|Q0S1C7.1|RUVA_RHOSR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
gi|110823375|gb|ABG98659.1| holliday junction DNA helicase [Rhodococcus jostii RHA1]
Length=200
Score = 273 bits (697), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 146/200 (73%), Positives = 169/200 (85%), Gaps = 4/200 (2%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MIASVRGEVLE+ALDH VIE+AGVGYRVNATPATL L++G+EARL+TAMIVREDSMTLY
Sbjct 1 MIASVRGEVLEIALDHAVIESAGVGYRVNATPATLGGLQRGSEARLVTAMIVREDSMTLY 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GFPD E+++LF L +VSGVGPRLAMA LAV + ALR LA+GNV ALTRVPGIGKRGA
Sbjct 61 GFPDSESKELFGLLQTVSGVGPRLAMATLAVLEPDALRAALAEGNVTALTRVPGIGKRGA 120
Query 121 ERMVLELRDKV-GVAATGGAL---STNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAAN 176
ERMV+ELRDKV VA+T GA+ + G +VR +VEALVGLGF AKQAE+A D+VLA
Sbjct 121 ERMVVELRDKVDAVASTSGAVPLGAGGGGSVRDQIVEALVGLGFPAKQAEQAADSVLAEA 180
Query 177 HDATTSSALRSALSLLGKAR 196
++TTS+ALRSALSLLGK R
Sbjct 181 PESTTSTALRSALSLLGKTR 200
>gi|312139494|ref|YP_004006830.1| holliday junction DNA helicase ruva [Rhodococcus equi 103S]
gi|311888833|emb|CBH48145.1| Holliday junction DNA helicase RuvA [Rhodococcus equi 103S]
Length=201
Score = 266 bits (681), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 145/201 (73%), Positives = 163/201 (82%), Gaps = 5/201 (2%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MIASVRGEVLEV LDH VIEAAGVGYRVNATPATLATLR+G E+RL+TAMIVREDSMTLY
Sbjct 1 MIASVRGEVLEVGLDHAVIEAAGVGYRVNATPATLATLRRGDESRLLTAMIVREDSMTLY 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GF D E+RDLF L +VSGVGPRLAMA LAV + ALR+ LA+GNV ALTRVPGIGKRGA
Sbjct 61 GFADAESRDLFGLLQTVSGVGPRLAMAILAVLEPEALRKALAEGNVTALTRVPGIGKRGA 120
Query 121 ERMVLELRDKVGVAATGGAL-----STNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAA 175
ERMV+ELRDKV A G L +T+ VR VVEAL GLGF + AE+ATDTV+AA
Sbjct 121 ERMVVELRDKVEAVAVTGDLPGAGAATSASVVRDQVVEALTGLGFKLEHAEKATDTVVAA 180
Query 176 NHDATTSSALRSALSLLGKAR 196
+ +A TS+ LRSAL+LLGK R
Sbjct 181 DPEAPTSTVLRSALALLGKTR 201
>gi|325672616|ref|ZP_08152312.1| crossover junction ATP-dependent DNA helicase RuvA [Rhodococcus
equi ATCC 33707]
gi|325556493|gb|EGD26159.1| crossover junction ATP-dependent DNA helicase RuvA [Rhodococcus
equi ATCC 33707]
Length=201
Score = 266 bits (680), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 145/201 (73%), Positives = 163/201 (82%), Gaps = 5/201 (2%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MIASVRGEVLEV LDH VIEAAGVGYRVNATPATLATLR+G E+RL+TAMIVREDSMTLY
Sbjct 1 MIASVRGEVLEVGLDHAVIEAAGVGYRVNATPATLATLRRGDESRLLTAMIVREDSMTLY 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GF D E+RDLF L +VSGVGPRLAMA LAV + ALR+ LA+GNV ALTRVPGIGKRGA
Sbjct 61 GFADAESRDLFGLLQTVSGVGPRLAMAILAVLEPEALRKALAEGNVTALTRVPGIGKRGA 120
Query 121 ERMVLELRDKVGVAATGGAL-----STNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAA 175
ERMV+ELRDKV A G L +T+ VR VVEAL GLGF + AE+ATDTV+AA
Sbjct 121 ERMVVELRDKVEAVAVTGDLPGAGAATSASIVRDQVVEALTGLGFKLEHAEKATDTVVAA 180
Query 176 NHDATTSSALRSALSLLGKAR 196
+ +A TS+ LRSAL+LLGK R
Sbjct 181 DPEAPTSTVLRSALALLGKTR 201
>gi|229491976|ref|ZP_04385793.1| holliday junction DNA helicase RuvA [Rhodococcus erythropolis
SK121]
gi|229321108|gb|EEN86912.1| holliday junction DNA helicase RuvA [Rhodococcus erythropolis
SK121]
Length=199
Score = 263 bits (672), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 141/199 (71%), Positives = 162/199 (82%), Gaps = 3/199 (1%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MIASVRGEVL++ALDH VIEA+GVGYRVNATP TL L +G+EARL T MIVREDSMTLY
Sbjct 1 MIASVRGEVLDIALDHAVIEASGVGYRVNATPVTLGALHRGSEARLFTTMIVREDSMTLY 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GF D E++DLF L +VSGVGPRLAMA LAV + ALR+ L++GN+ ALTRVPGIGKRGA
Sbjct 61 GFSDTESKDLFSLLQTVSGVGPRLAMATLAVLEPDALRRALSEGNLTALTRVPGIGKRGA 120
Query 121 ERMVLELRDKV-GVAATGGALS--TNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAANH 177
ERMV+ELRDKV VA T GA S G ++R +VEAL GLGF KQAE+ATD+VLA +
Sbjct 121 ERMVVELRDKVDAVATTAGAASGVVAGSSIRDQIVEALEGLGFPIKQAEQATDSVLAESP 180
Query 178 DATTSSALRSALSLLGKAR 196
+ATTS ALRSALSLLGK R
Sbjct 181 EATTSVALRSALSLLGKTR 199
>gi|54025666|ref|YP_119908.1| Holliday junction DNA helicase RuvA [Nocardia farcinica IFM 10152]
gi|81374258|sp|Q5YTE7.1|RUVA_NOCFA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
gi|54017174|dbj|BAD58544.1| putative Holliday junction DNA helicase B subunit [Nocardia farcinica
IFM 10152]
Length=201
Score = 258 bits (660), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 142/201 (71%), Positives = 157/201 (79%), Gaps = 5/201 (2%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MIASVRGEVLE+ALDHVV+EAAGVGYR+NATP+TLATL +G EARL TAMIVREDSMTLY
Sbjct 1 MIASVRGEVLEIALDHVVVEAAGVGYRLNATPSTLATLTRGAEARLYTAMIVREDSMTLY 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GF D E RDLF L +VSGVGPRLAMA LAV + ALR+ LA+ NVAALTRVPGIGKRGA
Sbjct 61 GFADTEARDLFGLLQTVSGVGPRLAMAVLAVLEPEALRKALAESNVAALTRVPGIGKRGA 120
Query 121 ERMVLELRDKVGVAAT-----GGALSTNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAA 175
ERMV+ELRDKV + G + VR VVEAL GLGF KQAE+A DTVLA
Sbjct 121 ERMVVELRDKVNLVPVQAGPPGSTPAVAATPVREQVVEALTGLGFPLKQAEQALDTVLAE 180
Query 176 NHDATTSSALRSALSLLGKAR 196
A TS+ALR+ALSLLGK R
Sbjct 181 QPAADTSTALRAALSLLGKNR 201
>gi|226306411|ref|YP_002766371.1| Holliday junction DNA helicase RuvA [Rhodococcus erythropolis
PR4]
gi|259495653|sp|C0ZZ47.1|RUVA_RHOE4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
gi|226185528|dbj|BAH33632.1| Holliday junction DNA helicase RuvA [Rhodococcus erythropolis
PR4]
Length=199
Score = 256 bits (653), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 137/199 (69%), Positives = 160/199 (81%), Gaps = 3/199 (1%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MIASVRGEVL++ALDH VIEA+GVGYRVNATP TL L +G+EARL T MIVREDSMTLY
Sbjct 1 MIASVRGEVLDIALDHAVIEASGVGYRVNATPVTLGALHRGSEARLFTTMIVREDSMTLY 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GF D E++DLF L +VSGVGPRLAMA LAV + ALR+ L++GN+ ALTRVPGIGKRGA
Sbjct 61 GFSDTESKDLFSLLQTVSGVGPRLAMATLAVLEPDALRRALSEGNLTALTRVPGIGKRGA 120
Query 121 ERMVLELRDKVGVAATGGALSTN---GHAVRSPVVEALVGLGFAAKQAEEATDTVLAANH 177
ERMV+ELRDKV AT ++ G ++R +VEAL GLGF KQAE+ATD+VLA +
Sbjct 121 ERMVVELRDKVDAVATTAGAASGAVVGSSIRDQIVEALEGLGFPIKQAEQATDSVLAESP 180
Query 178 DATTSSALRSALSLLGKAR 196
+ATTS ALRSALSLLGK R
Sbjct 181 EATTSVALRSALSLLGKTR 199
>gi|257055537|ref|YP_003133369.1| Holliday junction DNA helicase subunit RuvA [Saccharomonospora
viridis DSM 43017]
gi|256585409|gb|ACU96542.1| Holliday junction DNA helicase subunit RuvA [Saccharomonospora
viridis DSM 43017]
Length=199
Score = 218 bits (556), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 120/201 (60%), Positives = 150/201 (75%), Gaps = 7/201 (3%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MI+S+RGEVL V LDH VIE GVG+ V ATP TL TLR+GTEARL T ++VREDS+TL+
Sbjct 1 MISSIRGEVLAVGLDHAVIEVGGVGFTVQATPTTLGTLRRGTEARLYTTLMVREDSLTLF 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GF D E+R+LF L +VSG+GPRLAMAALAV + LR+ LADG++ LT+VPGIG++GA
Sbjct 61 GFADVESRELFGLLQTVSGIGPRLAMAALAVLEPEKLRRALADGDITTLTQVPGIGRKGA 120
Query 121 ERMVLELRDKVGVAATGGAL-----STNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAA 175
ER+++ELRDKV A GG +T G AVR+ VV ALVGLGF+AKQAE+A D V +
Sbjct 121 ERLIIELRDKVS-APMGGEPAPDEGTTVGSAVRADVVAALVGLGFSAKQAEQAVDKV-SG 178
Query 176 NHDATTSSALRSALSLLGKAR 196
TS LR+AL+ LGK +
Sbjct 179 EVPNDTSQVLRAALATLGKKK 199
>gi|317508678|ref|ZP_07966333.1| Holliday junction DNA helicase RuvA [Segniliparus rugosus ATCC
BAA-974]
gi|316252999|gb|EFV12414.1| Holliday junction DNA helicase RuvA [Segniliparus rugosus ATCC
BAA-974]
Length=199
Score = 215 bits (547), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 118/199 (60%), Positives = 147/199 (74%), Gaps = 3/199 (1%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MIASVRGE +EV DHVV+E AG+GY V P+T A +G E RL+T+ IVRED+ TLY
Sbjct 1 MIASVRGEAVEVGADHVVVECAGLGYHVVVLPSTAAMAARGDELRLVTSFIVREDAQTLY 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GFPD ETRDLF L +VSGVGP+LAMA L+V + LR+ + +G++AALTRVPG+GKR A
Sbjct 61 GFPDRETRDLFDVLRTVSGVGPKLAMAVLSVLEPAQLRRAIGEGDLAALTRVPGVGKRVA 120
Query 121 ERMVLELRDK--VGVAATGGALSTNGHA-VRSPVVEALVGLGFAAKQAEEATDTVLAANH 177
ER+ LEL++K VGV ATG + G A VR VV+ LVGLGFA K AE A D+VLA +
Sbjct 121 ERLALELKEKVGVGVGATGKPGAPEGSALVRQQVVDGLVGLGFALKPAESAADSVLAEDQ 180
Query 178 DATTSSALRSALSLLGKAR 196
DA+ + ALR AL++LGK R
Sbjct 181 DASAAVALRGALAILGKNR 199
>gi|343924327|ref|ZP_08763878.1| Holliday junction ATP-dependent DNA helicase RuvA [Gordonia alkanivorans
NBRC 16433]
gi|343765761|dbj|GAA10804.1| Holliday junction ATP-dependent DNA helicase RuvA [Gordonia alkanivorans
NBRC 16433]
Length=197
Score = 214 bits (545), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 122/199 (62%), Positives = 143/199 (72%), Gaps = 7/199 (3%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MIASVRG VLE+ALDH VI+ AGVGYRV ATP TL+ LR+G EA L+T+MIVREDSMTLY
Sbjct 1 MIASVRGPVLEIALDHAVIDCAGVGYRVLATPVTLSRLRRGDEATLLTSMIVREDSMTLY 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GF + + R LF L +V+GVGPRLAMA LAV + ALR+ LAD + ALT VPGIGKR A
Sbjct 61 GFTEPDARALFALLQTVTGVGPRLAMATLAVLEPDALRRALADSDTKALTSVPGIGKRVA 120
Query 121 ERMVLELRDKV----GVAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAAN 176
ER+ +ELRDKV ATG S +R V EALVGLGF A AE+A VLA N
Sbjct 121 ERLCVELRDKVDRPTADTATG---SVPAVGIRDQVAEALVGLGFTAAPAEKAVTAVLAEN 177
Query 177 HDATTSSALRSALSLLGKA 195
DA S+ LR +L++LGKA
Sbjct 178 PDADASTVLRRSLAMLGKA 196
>gi|331697370|ref|YP_004333609.1| Holliday junction ATP-dependent DNA helicase ruvA [Pseudonocardia
dioxanivorans CB1190]
gi|326952059|gb|AEA25756.1| Holliday junction ATP-dependent DNA helicase ruvA [Pseudonocardia
dioxanivorans CB1190]
Length=199
Score = 212 bits (539), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 117/198 (60%), Positives = 146/198 (74%), Gaps = 4/198 (2%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MI+SVRGEVL V LDH V+E GVG+ V ATPATL LR+G EARL T ++VREDS+TLY
Sbjct 1 MISSVRGEVLSVGLDHAVVEVGGVGFAVFATPATLGGLRRGQEARLETLLVVREDSLTLY 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GF D E R+LF+ L +VSGVGPRLA+A LAV D +LR+ LADG+ A LTR+PG+G++ A
Sbjct 61 GFADAEERELFVLLQTVSGVGPRLALATLAVLDPQSLRRALADGDTATLTRIPGVGRKSA 120
Query 121 ERMVLELRDKVGVAAT--GGALS--TNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAAN 176
ER+V+ELRDKV A G + G+A R VVEALVGLGF A+ AE A D +LA +
Sbjct 121 ERLVVELRDKVVAPAPVLAGDVRPLVTGNAHRDQVVEALVGLGFTARPAEAAVDGILAGD 180
Query 177 HDATTSSALRSALSLLGK 194
DA ++ LRSAL+ LG+
Sbjct 181 PDAEPAALLRSALATLGR 198
>gi|262202231|ref|YP_003273439.1| Holliday junction DNA helicase RuvA [Gordonia bronchialis DSM
43247]
gi|262085578|gb|ACY21546.1| Holliday junction DNA helicase RuvA [Gordonia bronchialis DSM
43247]
Length=197
Score = 212 bits (539), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 124/204 (61%), Positives = 145/204 (72%), Gaps = 17/204 (8%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MIASVRG VLEVALDH VI+ GVGYRV ATP TL+ LR+G E+ L+T+MIVREDSMTLY
Sbjct 1 MIASVRGPVLEVALDHAVIDCGGVGYRVLATPVTLSRLRRGEESTLLTSMIVREDSMTLY 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GF + + R LF L +V+GVGPRLAMA LAV + ALR+ LA+ + ALT VPGIGKR A
Sbjct 61 GFTEPDARALFALLQTVTGVGPRLAMATLAVLEPEALRRALAESDTKALTSVPGIGKRVA 120
Query 121 ERMVLELRDK---------VGVAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEATDT 171
ER+V+ELRDK VGV A GG VR V +ALVGLGF A AE+A
Sbjct 121 ERLVVELRDKVDRPTGESAVGVVAPGG--------VREQVADALVGLGFTAGPAEKAVAA 172
Query 172 VLAANHDATTSSALRSALSLLGKA 195
VLA + DA S+ALR +LSLLGKA
Sbjct 173 VLADHPDADASTALRQSLSLLGKA 196
>gi|256375826|ref|YP_003099486.1| Holliday junction DNA helicase RuvA [Actinosynnema mirum DSM
43827]
gi|255920129|gb|ACU35640.1| Holliday junction DNA helicase RuvA [Actinosynnema mirum DSM
43827]
Length=198
Score = 209 bits (532), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 115/200 (58%), Positives = 148/200 (74%), Gaps = 6/200 (3%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MI+S+RG+VL + LDH V+E GVG+ V ATPATL +LR+G EA L TA++VREDS+TL+
Sbjct 1 MISSLRGQVLSIGLDHAVVEVGGVGFAVQATPATLGSLRRGEEAVLSTALVVREDSLTLF 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GF D ++R LF L +VSG+GPRLA+A LAV + LR LA+G+V+ LT+VPGIG++GA
Sbjct 61 GFADADSRQLFGLLQTVSGIGPRLALATLAVLEPEKLRAALAEGSVSVLTQVPGIGRKGA 120
Query 121 ERMVLELRDKVGVAATGGALSTNGHA----VRSPVVEALVGLGFAAKQAEEATDTVLAAN 176
ER+V+ELRDKVG AT A +++G VR VVEAL+GLGF AKQAE A D VLA +
Sbjct 121 ERLVIELRDKVGQLAT--APASDGVVAVGRVRDQVVEALLGLGFPAKQAETAVDGVLAED 178
Query 177 HDATTSSALRSALSLLGKAR 196
TS LR ALS LG+ +
Sbjct 179 PSLGTSVVLRKALSGLGRKK 198
>gi|333919483|ref|YP_004493064.1| Holliday junction ATP-dependent DNA helicase ruvA [Amycolicicoccus
subflavus DQS3-9A1]
gi|333481704|gb|AEF40264.1| Holliday junction ATP-dependent DNA helicase ruvA [Amycolicicoccus
subflavus DQS3-9A1]
Length=201
Score = 207 bits (526), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 119/203 (59%), Positives = 151/203 (75%), Gaps = 9/203 (4%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MIAS+RG VL + LDH V+EAAGVGYR+NATP TL+TL +G++ARL+T M+VREDSMTLY
Sbjct 1 MIASIRGPVLSIGLDHAVLEAAGVGYRINATPGTLSTLSRGSDARLLTTMVVREDSMTLY 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GFPD E+R+LF L +V+GVGPRLAMA LAV + LR LA+G+V ALTRVPG+GKR A
Sbjct 61 GFPDEESRELFTLLQTVTGVGPRLAMAVLAVLEPQLLRTALAEGDVRALTRVPGVGKRVA 120
Query 121 ERMVLELRDKVGV-------AATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEATDTVL 173
ER+V++LRDKVG A G S++ V+ V EALVGLGF+A QAE+AT
Sbjct 121 ERLVVDLRDKVGPVHPSTTDAPIVGPRSSS--VVQDQVAEALVGLGFSAAQAEQATAEAA 178
Query 174 AANHDATTSSALRSALSLLGKAR 196
+A+ S+ LR+AL+ LGK +
Sbjct 179 QLQPEASNSTLLRTALASLGKNK 201
>gi|300787173|ref|YP_003767464.1| holliday junction DNA helicase RuvA [Amycolatopsis mediterranei
U32]
gi|299796687|gb|ADJ47062.1| holliday junction DNA helicase RuvA [Amycolatopsis mediterranei
U32]
gi|340528672|gb|AEK43877.1| holliday junction DNA helicase RuvA [Amycolatopsis mediterranei
S699]
Length=198
Score = 202 bits (513), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 122/199 (62%), Positives = 150/199 (76%), Gaps = 4/199 (2%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MI+SVRGEVL V LDHVV+E GVG+ V ATPATLATLR+G EARL TA++VREDS+TL+
Sbjct 1 MISSVRGEVLIVGLDHVVVEVGGVGFAVQATPATLATLRRGEEARLHTALVVREDSLTLF 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GF D + R+LF L +VSG+GPRLA+A LAV D LR L +GN+ LT VPGIG++GA
Sbjct 61 GFADADARELFGLLQTVSGIGPRLALATLAVLDPGKLRAALVEGNITVLTSVPGIGRKGA 120
Query 121 ERMVLELRDKV-GVAATGG--ALSTNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAANH 177
ER+ LELRDKV +A TG A++ G A+R+ VVEAL GLGF AKQAE+A D VLA
Sbjct 121 ERLTLELRDKVTALAGTGDVPAVTAPG-ALRAEVVEALAGLGFPAKQAEQAVDKVLADGD 179
Query 178 DATTSSALRSALSLLGKAR 196
TT+ LR+AL+ LG+ R
Sbjct 180 GHTTAGVLRAALATLGRKR 198
>gi|302527851|ref|ZP_07280193.1| Holliday junction DNA helicase RuvA [Streptomyces sp. AA4]
gi|302436746|gb|EFL08562.1| Holliday junction DNA helicase RuvA [Streptomyces sp. AA4]
Length=198
Score = 198 bits (503), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 119/200 (60%), Positives = 147/200 (74%), Gaps = 6/200 (3%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MI+SVRGEVL V LDHVV+E GVG V ATPATLATLR+G + RL TA++VREDS+TL+
Sbjct 1 MISSVRGEVLSVGLDHVVVEVGGVGLAVQATPATLATLRRGEQTRLHTALVVREDSLTLF 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GF + + R+LF L +VSG+GPRLA+A LAV + LR L +GN+ LT+VPGIG++GA
Sbjct 61 GFAEEDARELFGLLQTVSGIGPRLALATLAVLEPDKLRAALVEGNITVLTQVPGIGRKGA 120
Query 121 ERMVLELRDKVGVAATGGA----LSTNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAAN 176
ER+ LELRDK V A GGA + T A+R VVEAL GLGF AKQAE+A D VL+
Sbjct 121 ERLSLELRDK--VTALGGASDAPVVTAPGALRGEVVEALAGLGFPAKQAEQAVDKVLSEG 178
Query 177 HDATTSSALRSALSLLGKAR 196
TTSS LR+AL+ LG+ R
Sbjct 179 DGHTTSSVLRAALAALGRKR 198
>gi|296393859|ref|YP_003658743.1| Holliday junction DNA helicase RuvA [Segniliparus rotundus DSM
44985]
gi|296181006|gb|ADG97912.1| Holliday junction DNA helicase RuvA [Segniliparus rotundus DSM
44985]
Length=199
Score = 197 bits (501), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 110/199 (56%), Positives = 142/199 (72%), Gaps = 7/199 (3%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MIAS+RGE +EV DHVV+E AG+G+ V P+T A +G E RL T+ IVRED+ TLY
Sbjct 1 MIASIRGEAVEVGADHVVVECAGLGHHVVVLPSTAAAATRGAEVRLATSFIVREDAQTLY 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GFPD ETRDLF L +VSGVGP+LAMA L+V + ALR+ + +G++ ALT+VPG+GKR A
Sbjct 61 GFPDRETRDLFDVLRTVSGVGPKLAMAVLSVLEPVALRRAIGEGDLGALTKVPGVGKRVA 120
Query 121 ERMVLELRDKVG----VAATGGALSTNGHA-VRSPVVEALVGLGFAAKQAEEATDTVLAA 175
ER+ LEL++K+G AA GA G A VR VV+ LVGLGF K AE A D+V+
Sbjct 121 ERLALELKEKIGGPPSAAANLGA--PEGSALVRQQVVDGLVGLGFPLKPAESAADSVMQE 178
Query 176 NHDATTSSALRSALSLLGK 194
N +A+ + ALR AL++LGK
Sbjct 179 NPEASPAVALRGALAILGK 197
>gi|326382127|ref|ZP_08203819.1| Holliday junction DNA helicase RuvA [Gordonia neofelifaecis NRRL
B-59395]
gi|326198857|gb|EGD56039.1| Holliday junction DNA helicase RuvA [Gordonia neofelifaecis NRRL
B-59395]
Length=201
Score = 194 bits (492), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 110/197 (56%), Positives = 139/197 (71%), Gaps = 1/197 (0%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
+IASV GEV+++ALDH V+E AGVGY+V ATP TL +L++G RL+T+M+VREDSMTLY
Sbjct 5 VIASVSGEVIDIALDHAVVECAGVGYKVLATPPTLGSLKRGGHVRLLTSMMVREDSMTLY 64
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GF D E RDLF L +V+GVGPRLAMA LAV + +LR+ LA+ + ALT VPGIGKR A
Sbjct 65 GFTDPEARDLFGLLQTVTGVGPRLAMATLAVLEPDSLRRALAESDAKALTTVPGIGKRVA 124
Query 121 ERMVLELRDKVGVAA-TGGALSTNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAANHDA 179
ER+V+ELRDKV + + + V EALVGLGF A++A VLA + A
Sbjct 125 ERLVVELRDKVTAGSAGAVPGAPVAAGAGAQVTEALVGLGFTEGAAQKAVAAVLADDPGA 184
Query 180 TTSSALRSALSLLGKAR 196
+SS LRSAL+ LG R
Sbjct 185 DSSSLLRSALTALGPRR 201
>gi|134098596|ref|YP_001104257.1| Holliday junction DNA helicase RuvA [Saccharopolyspora erythraea
NRRL 2338]
gi|291008207|ref|ZP_06566180.1| Holliday junction DNA helicase RuvA [Saccharopolyspora erythraea
NRRL 2338]
gi|166200258|sp|A4FBA7.1|RUVA_SACEN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
gi|133911219|emb|CAM01332.1| Holliday junction DNA helicase [Saccharopolyspora erythraea NRRL
2338]
Length=200
Score = 192 bits (488), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 118/200 (59%), Positives = 141/200 (71%), Gaps = 4/200 (2%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MIASVRG VL V LDH VIE GVG V+ATPATLA LR+G EARL T++IVREDS+TLY
Sbjct 1 MIASVRGPVLSVGLDHAVIEVGGVGMAVHATPATLAGLRRGEEARLWTSLIVREDSLTLY 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GF D E RDLF L + SGVGPRLA+A LAV L L+DGN+ LT+VPG+GK+ A
Sbjct 61 GFADAEARDLFGLLQTASGVGPRLALATLAVLAPDQLCHALSDGNITTLTQVPGVGKKSA 120
Query 121 ERMVLELRDKVGVAATGGALSTNGHA---VRSPVVEALVGLGFAAKQAEEATDTVLAANH 177
ER++LELRDKVG A VRS V EALVGLGF+AKQAE++ + VLAA+
Sbjct 121 ERLILELRDKVGTVAGTAGAGAQAPDRGRVRSEVSEALVGLGFSAKQAEQSVEAVLAADG 180
Query 178 DAT-TSSALRSALSLLGKAR 196
+ TS+ LR AL+ LG +
Sbjct 181 PVSDTSAVLRKALAALGPKK 200
>gi|227833242|ref|YP_002834949.1| holliday junction DNA helicase [Corynebacterium aurimucosum ATCC
700975]
gi|262184228|ref|ZP_06043649.1| holliday junction DNA helicase [Corynebacterium aurimucosum ATCC
700975]
gi|254766955|sp|C3PGQ7.1|RUVA_CORA7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
gi|227454258|gb|ACP33011.1| holliday junction DNA helicase [Corynebacterium aurimucosum ATCC
700975]
Length=202
Score = 182 bits (463), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 101/202 (50%), Positives = 136/202 (68%), Gaps = 6/202 (2%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MIAS+RG VL++ LDH V+E AGVGY+V ATPA L TL++G EAR++T ++V+EDSMTLY
Sbjct 1 MIASLRGTVLDIQLDHAVLECAGVGYKVLATPAMLGTLQRGEEARVMTTLVVKEDSMTLY 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GF + RD+F L +VSG+GP+LA+AAL+V A L Q +A A L ++PG+GKR A
Sbjct 61 GFTSQDDRDMFHVLQTVSGLGPKLALAALSVMSAGDLAQAIAGEEAARLQKIPGVGKRVA 120
Query 121 ERMVLELRDKVGVAATGGALSTNGHA------VRSPVVEALVGLGFAAKQAEEATDTVLA 174
+R++LEL+DKV A + + A V VVEAL+GLGF K A ++V+A
Sbjct 121 QRLILELKDKVKAFAPAESADLSSAAPAAAGPVVEDVVEALIGLGFTDKMARPVVESVVA 180
Query 175 ANHDATTSSALRSALSLLGKAR 196
DA T LR+ALS LG +
Sbjct 181 EQPDAATPVVLRAALSQLGAKK 202
>gi|225021302|ref|ZP_03710494.1| hypothetical protein CORMATOL_01321 [Corynebacterium matruchotii
ATCC 33806]
gi|224946035|gb|EEG27244.1| hypothetical protein CORMATOL_01321 [Corynebacterium matruchotii
ATCC 33806]
Length=198
Score = 182 bits (463), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/197 (51%), Positives = 132/197 (68%), Gaps = 3/197 (1%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MI S+RG V+++ H VIE AGVGY+V ATP+TL L +G E ++ MIVRE+S TLY
Sbjct 1 MIVSLRGTVIDITAHHAVIECAGVGYQVLATPSTLGHLTRGAETFILITMIVREESQTLY 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GF D TRD+F+TL +VSG+GP+LA+AA +V+ P L + G+ L ++PG+GKR A
Sbjct 61 GFLDAATRDMFVTLQTVSGLGPKLALAAQSVYTTPELAHAITHGDTKTLQKIPGVGKRMA 120
Query 121 ERMVLELRDKVGVAATGGALSTNG--HA-VRSPVVEALVGLGFAAKQAEEATDTVLAANH 177
ERMV++L+DKV AT + H V+EAL LGFA K AE TVLAA+
Sbjct 121 ERMVVDLKDKVATYATPETPTPAAVPHIDTYEQVLEALASLGFAEKTAEPVLTTVLAADP 180
Query 178 DATTSSALRSALSLLGK 194
TT +ALR++L+LLGK
Sbjct 181 TLTTPAALRASLNLLGK 197
>gi|254821998|ref|ZP_05226999.1| Holliday junction DNA helicase RuvA [Mycobacterium intracellulare
ATCC 13950]
Length=105
Score = 182 bits (461), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 92/105 (88%), Positives = 97/105 (93%), Gaps = 0/105 (0%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MIA+VRGEVLEVALDH VIEAAGVGYRVNATP+TL+TLR GTEARLITAMIVREDSMTLY
Sbjct 1 MIAAVRGEVLEVALDHAVIEAAGVGYRVNATPSTLSTLRTGTEARLITAMIVREDSMTLY 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGN 105
GF D +TRDLFLTLLSVSGVGPRLAMA LAVHDA ALRQ L DG+
Sbjct 61 GFTDTDTRDLFLTLLSVSGVGPRLAMATLAVHDAGALRQALHDGD 105
>gi|305681259|ref|ZP_07404066.1| Holliday junction DNA helicase RuvA [Corynebacterium matruchotii
ATCC 14266]
gi|305659464|gb|EFM48964.1| Holliday junction DNA helicase RuvA [Corynebacterium matruchotii
ATCC 14266]
Length=198
Score = 181 bits (459), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 99/197 (51%), Positives = 130/197 (66%), Gaps = 3/197 (1%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MI S+RG V+++ H VIE AGVGY+V ATP TL L +G E ++ MIVRE+S TLY
Sbjct 1 MIVSLRGTVIDITAHHAVIECAGVGYQVLATPTTLGHLTRGAETFILITMIVREESQTLY 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GF D TRD+F TL +VSG+GP+LA+AA +V+ P L + G+ L ++PG+GKR A
Sbjct 61 GFLDAATRDMFATLQTVSGLGPKLALAAQSVYTTPELAHAITHGDTKTLQKIPGVGKRMA 120
Query 121 ERMVLELRDKVGVAATGGALSTNG--HA-VRSPVVEALVGLGFAAKQAEEATDTVLAANH 177
ERMV++L+DKV A +T H V+EAL LGFA K AE TVLAA+
Sbjct 121 ERMVVDLKDKVATYAAPETPTTAAVPHTDTYEQVLEALASLGFAEKTAEPVLTTVLAADP 180
Query 178 DATTSSALRSALSLLGK 194
TT +ALR++L+LLGK
Sbjct 181 TLTTPAALRASLNLLGK 197
>gi|269795058|ref|YP_003314513.1| Holliday junction DNA helicase subunit RuvA [Sanguibacter keddieii
DSM 10542]
gi|269097243|gb|ACZ21679.1| Holliday junction DNA helicase subunit RuvA [Sanguibacter keddieii
DSM 10542]
Length=206
Score = 181 bits (458), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 110/205 (54%), Positives = 141/205 (69%), Gaps = 9/205 (4%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MIAS+ G V V LD V+ AG+GY V ATPATLATLR G EA + T+++VREDS+TLY
Sbjct 1 MIASLSGTVQTVRLDSAVLNVAGIGYLVYATPATLATLRVGAEASVATSLVVREDSLTLY 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GF D + R +F +VSGVGPRLA+A LAVH LR+ LA G+V ALTRVPGIG +GA
Sbjct 61 GFSDDDERSVFEASQTVSGVGPRLALAMLAVHTPDGLRRALAGGDVKALTRVPGIGAKGA 120
Query 121 ERMVLELRDKVG--VAATGGALS-TNGHA-VRSPVVEALVGLGFAAKQAEEATDTVLAAN 176
+R++LEL DK+G GG+++ T G R VVEALV LG++AK AE+A TVLA +
Sbjct 121 QRLILELGDKLGQPTGLDGGSVAPTAGLGDQRDQVVEALVSLGWSAKVAEDAIGTVLAES 180
Query 177 HDATTSSA-----LRSALSLLGKAR 196
+ +++ LRSAL +LG R
Sbjct 181 GATSVTTSDVPVVLRSALKVLGGHR 205
>gi|255325096|ref|ZP_05366202.1| holliday junction DNA helicase RuvA [Corynebacterium tuberculostearicum
SK141]
gi|255297661|gb|EET76972.1| holliday junction DNA helicase RuvA [Corynebacterium tuberculostearicum
SK141]
Length=205
Score = 179 bits (453), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 102/205 (50%), Positives = 136/205 (67%), Gaps = 9/205 (4%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MIA++RGEV+ + LDH VI+ AGVGY+ ATP TL TLR+G +A ++T ++V+EDS+TLY
Sbjct 1 MIAALRGEVIHIGLDHGVIDCAGVGYKFLATPKTLGTLRRGEQATVLTNLVVKEDSLTLY 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GF E R++F L SVSG+GP+LA+AAL+V A L + +V AL +PG+GKR A
Sbjct 61 GFSADEDREMFHVLQSVSGLGPKLALAALSVMGAGELAAAIGAEDVKALQSIPGVGKRMA 120
Query 121 ERMVLELRDKVG------VAATGG---ALSTNGHAVRSPVVEALVGLGFAAKQAEEATDT 171
+R+ LEL+DKV AA G A++ G AV V EALVGLGF K A ++
Sbjct 121 QRLALELKDKVAGFAPSEPAAAGSVETAIAPAGGAVVESVTEALVGLGFTDKGARPVVES 180
Query 172 VLAANHDATTSSALRSALSLLGKAR 196
A N D TSS LR+AL+ LGK +
Sbjct 181 AYAENPDVDTSSLLRAALAQLGKKK 205
>gi|311739557|ref|ZP_07713392.1| crossover junction ATP-dependent DNA helicase RuvA [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311305373|gb|EFQ81441.1| crossover junction ATP-dependent DNA helicase RuvA [Corynebacterium
pseudogenitalium ATCC 33035]
Length=205
Score = 178 bits (451), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 99/205 (49%), Positives = 135/205 (66%), Gaps = 9/205 (4%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MIA++RGEV+ + LDH VI+ AGVGY+ ATP TL TLR+G +A ++T ++V+EDS+TLY
Sbjct 1 MIAALRGEVIHIGLDHGVIDCAGVGYKFLATPKTLGTLRRGEQATVLTNLVVKEDSLTLY 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GF E R++F L SVSG+GP+LA+AAL+V A L + +V AL +PG+GKR A
Sbjct 61 GFSADEDREMFHVLQSVSGLGPKLALAALSVMGAGELAAAIGGEDVKALQSIPGVGKRMA 120
Query 121 ERMVLELRDKV---------GVAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEATDT 171
+R+ LEL+DKV + A++ G AV V EAL+GLGF K A ++
Sbjct 121 QRLALELKDKVAAFAPSEAAAAGSVDTAVAPAGGAVVESVTEALIGLGFTDKGARPVVES 180
Query 172 VLAANHDATTSSALRSALSLLGKAR 196
A N DA TSS LR+AL+ LGK +
Sbjct 181 AYADNPDADTSSLLRAALAQLGKKK 205
>gi|311742330|ref|ZP_07716139.1| crossover junction ATP-dependent DNA helicase RuvA [Aeromicrobium
marinum DSM 15272]
gi|311313958|gb|EFQ83866.1| crossover junction ATP-dependent DNA helicase RuvA [Aeromicrobium
marinum DSM 15272]
Length=199
Score = 174 bits (441), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 101/201 (51%), Positives = 131/201 (66%), Gaps = 7/201 (3%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MIAS+RG V V+LD VV++ GVGY TP T+A LR G EA+L T ++VREDSMT+Y
Sbjct 1 MIASLRGTVAAVSLDSVVLDVGGVGYLTRCTPGTIAGLRIGQEAQLATTLVVREDSMTVY 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GF D RD+F + + SGVGP++A+A LAV D LRQ +A + + L VPGIG++GA
Sbjct 61 GFADATERDMFELVQTASGVGPKVALAMLAVLDPDRLRQAIAQADHSTLMSVPGIGRKGA 120
Query 121 ERMVLELRDKVGVAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAANHD-- 178
ER+V+EL+D+VG+A G A T A R V EAL+GLG+ A+ AE A D V A D
Sbjct 121 ERIVVELKDRVGLA--GSAAPTGAPAWREQVHEALLGLGWPARDAERAVDNVAADLADDP 178
Query 179 ---ATTSSALRSALSLLGKAR 196
A S+ LR AL L + R
Sbjct 179 GAAADVSTLLRDALRSLARTR 199
>gi|300858594|ref|YP_003783577.1| holliday junction resolvasome helicase subunit A [Corynebacterium
pseudotuberculosis FRC41]
gi|300686048|gb|ADK28970.1| Holliday junction resolvasome helicase subunit A [Corynebacterium
pseudotuberculosis FRC41]
gi|302206306|gb|ADL10648.1| Holliday junction ATP-dependent DNA helicase ruvA [Corynebacterium
pseudotuberculosis C231]
gi|302330863|gb|ADL21057.1| Holliday junction ATP-dependent DNA helicase ruvA [Corynebacterium
pseudotuberculosis 1002]
gi|308276548|gb|ADO26447.1| Holliday junction ATP-dependent DNA helicase ruvA [Corynebacterium
pseudotuberculosis I19]
gi|341824990|gb|AEK92511.1| Holliday junction ATP-dependent DNA helicase ruvA [Corynebacterium
pseudotuberculosis PAT10]
Length=203
Score = 173 bits (439), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 96/203 (48%), Positives = 132/203 (66%), Gaps = 7/203 (3%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MI S+RG V + L VIE GVGY V A+P+TL+ +R+G E ++T M+VREDS TLY
Sbjct 1 MIVSLRGTVASIGLGSAVIECNGVGYEVLASPSTLSQMRRGEEFFVLTTMVVREDSQTLY 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GF E R +F L +VSG+GP+LA+AA +V A L Q +A+ + L R+PG+GKR A
Sbjct 61 GFASDEARQMFTLLQTVSGLGPKLALAAQSVLSAVDLAQAIANQDAKTLQRIPGVGKRVA 120
Query 121 ERMVLELRDKVGVAATGGALSTNGHA-------VRSPVVEALVGLGFAAKQAEEATDTVL 173
ER++++L+DKV T G + V + V+EAL+GLGF K AE A ++VL
Sbjct 121 ERIIVDLKDKVSAFITDGGATPASGGSSSATSDVSAQVLEALLGLGFTEKVAEPALNSVL 180
Query 174 AANHDATTSSALRSALSLLGKAR 196
+ + +ATTS ALR ALS LGK +
Sbjct 181 SESPNATTSQALRLALSTLGKKK 203
>gi|332670539|ref|YP_004453547.1| Holliday junction DNA helicase RuvA [Cellulomonas fimi ATCC 484]
gi|332339577|gb|AEE46160.1| Holliday junction DNA helicase RuvA [Cellulomonas fimi ATCC 484]
Length=204
Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 106/203 (53%), Positives = 136/203 (67%), Gaps = 13/203 (6%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MIASVRG VL V LD V+E GVG V ATPATLA LR G +A L T+++VREDS+TL+
Sbjct 1 MIASVRGTVLAVRLDSAVVEVGGVGMLVQATPATLAGLRVGAQATLATSLVVREDSLTLF 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GF D + R++F + +VSGVGPRLA+A LAVH LR+ +A ++AAL RVPGIG++GA
Sbjct 61 GFADADEREVFEVVQTVSGVGPRLALAMLAVHTPDGLRRAVAGEDLAALMRVPGIGRKGA 120
Query 121 ERMVLELRDKVGVAATGGALSTNGHAV---RSPVVEALVGLGFAAKQAEEATDTVLAANH 177
+R+VLEL D++G + GA +T+ A R VVEALVGLG+ AK A +A VL
Sbjct 121 QRIVLELGDRLGAPSGAGAPATSSAASDDRRDQVVEALVGLGWNAKAAGDAVSAVL---Q 177
Query 178 DAT-------TSSALRSALSLLG 193
DA + LR+AL LG
Sbjct 178 DAPGPVAADEVAGVLRAALRTLG 200
>gi|319947801|ref|ZP_08021995.1| Holliday junction DNA helicase RuvA [Dietzia cinnamea P4]
gi|319438525|gb|EFV93451.1| Holliday junction DNA helicase RuvA [Dietzia cinnamea P4]
Length=199
Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 107/198 (55%), Positives = 133/198 (68%), Gaps = 4/198 (2%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MIAS+RG V E+ LD V+E GVG V+ATPA LA LR+G E L T ++VREDS+TLY
Sbjct 1 MIASIRGTVAEIGLDRCVVETGGVGVLVHATPAALAGLRRGAEGMLHTELVVREDSLTLY 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GF + R LFLT+ +VSGVGPRLA+A +A + AL + L G+V ALT VPG+GKR A
Sbjct 61 GFDSVDARQLFLTVQTVSGVGPRLALAIVATLEPEALIRALGTGDVKALTLVPGVGKRTA 120
Query 121 ERMVLELRDKVGVAATGGALST---NGHA-VRSPVVEALVGLGFAAKQAEEATDTVLAAN 176
ERMVLEL+DKVG G A S+ NG A + V +AL GLGF+A +AE+ VL +
Sbjct 121 ERMVLELKDKVGPVPDGDAASSVVGNGRAPAATEVADALEGLGFSAAEAEKTATAVLDSQ 180
Query 177 HDATTSSALRSALSLLGK 194
D + ALR AL LGK
Sbjct 181 PDLDPAQALRLALKSLGK 198
>gi|296129641|ref|YP_003636891.1| Holliday junction DNA helicase RuvA [Cellulomonas flavigena DSM
20109]
gi|296021456|gb|ADG74692.1| Holliday junction DNA helicase RuvA [Cellulomonas flavigena DSM
20109]
Length=202
Score = 171 bits (434), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 102/201 (51%), Positives = 133/201 (67%), Gaps = 5/201 (2%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MIASV G VL V LD V+E GVG V ATPATLA LR G RL T+++VRED++TL+
Sbjct 1 MIASVHGTVLAVRLDSAVLEVGGVGLLVQATPATLAGLRVGQPGRLSTSLVVREDALTLF 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GF D + RD+F T+ +VSGVGPRLA+A LAVH LR+ +A ++AAL RVPGIG++GA
Sbjct 61 GFADDDERDVFETVQTVSGVGPRLALAMLAVHTPDGLRRAVAQEDIAALMRVPGIGRKGA 120
Query 121 ERMVLELRDKVGVA-ATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAAN--- 176
+R+VLEL +++G TGG + R VVEALVGLG+ + A++A +VL +
Sbjct 121 QRIVLELGERLGAPDPTGGTPAAPSADHREQVVEALVGLGWPLRAAQDAVASVLDGSAVP 180
Query 177 -HDATTSSALRSALSLLGKAR 196
LR+AL LG AR
Sbjct 181 VGAGEVPGVLRAALRTLGSAR 201
>gi|227504981|ref|ZP_03935030.1| Holliday junction DNA helicase motor protein [Corynebacterium
striatum ATCC 6940]
gi|227198431|gb|EEI78479.1| Holliday junction DNA helicase motor protein [Corynebacterium
striatum ATCC 6940]
Length=194
Score = 171 bits (433), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 94/194 (49%), Positives = 124/194 (64%), Gaps = 6/194 (3%)
Query 9 VLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLYGFPDGETR 68
+L ++LDH VIE AGVGY+ ATP TL TLR+G EA ++T+M+V+EDSMTLYGF + E R
Sbjct 1 MLSISLDHAVIECAGVGYKFLATPVTLGTLRRGDEATVLTSMVVKEDSMTLYGFSNDEDR 60
Query 69 DLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELR 128
D+F L +VSG+GP+LA+AAL+V L Q ++ G+ L +PG+GKR AER+ LELR
Sbjct 61 DMFHVLQTVSGLGPKLALAALSVMGPSQLAQAISSGDAKTLQTIPGVGKRMAERLALELR 120
Query 129 DKVGVAATGGALSTNGHA------VRSPVVEALVGLGFAAKQAEEATDTVLAANHDATTS 182
DKV A A V VVEALVGLGF K A + ++A A T+
Sbjct 121 DKVSAFAPQAQPGQEASAAVAHGPVVDQVVEALVGLGFTDKAARPVVEGIVAEESAAETA 180
Query 183 SALRSALSLLGKAR 196
LR AL+ LG+ +
Sbjct 181 VVLRGALAQLGRKK 194
>gi|269219375|ref|ZP_06163229.1| holliday junction DNA helicase RuvA [Actinomyces sp. oral taxon
848 str. F0332]
gi|269211168|gb|EEZ77508.1| holliday junction DNA helicase RuvA [Actinomyces sp. oral taxon
848 str. F0332]
Length=196
Score = 170 bits (431), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 98/196 (50%), Positives = 130/196 (67%), Gaps = 0/196 (0%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MIA++RG VL V VIEA GVGY V ATPATLA LR G EA + T+++VREDSMTL+
Sbjct 1 MIAALRGSVLSVEPTAAVIEAGGVGYAVQATPATLAGLRVGQEAFVHTSLVVREDSMTLF 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GF D + R++F L +VSGVGP+LA+ LA LRQ +A+ ++AALTRV G+GK+GA
Sbjct 61 GFADADEREVFDVLQTVSGVGPKLALTILATLTPDRLRQAVANADIAALTRVSGVGKKGA 120
Query 121 ERMVLELRDKVGVAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAANHDAT 180
+R+VLE+ K+G G + + +A VV ALVGLGF+ + AE A V A +A
Sbjct 121 QRLVLEIGAKLGPRRGGDLEAPSSNARSGDVVAALVGLGFSERDAESAFSQVEKATPEAE 180
Query 181 TSSALRSALSLLGKAR 196
LR++L +LG R
Sbjct 181 VPELLRASLKILGAGR 196
>gi|296139644|ref|YP_003646887.1| Holliday junction DNA helicase RuvA [Tsukamurella paurometabola
DSM 20162]
gi|296027778|gb|ADG78548.1| Holliday junction DNA helicase RuvA [Tsukamurella paurometabola
DSM 20162]
Length=199
Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 98/198 (50%), Positives = 130/198 (66%), Gaps = 4/198 (2%)
Query 1 MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLY 60
MIAS+RGEV + LDHVV+E AGVGY+V PAT L +G+E L+T+M+VREDSMTLY
Sbjct 1 MIASLRGEVRHIGLDHVVVECAGVGYKVLVAPATAGALTRGSEGSLLTSMVVREDSMTLY 60
Query 61 GFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGA 120
GF D ++LF L +V GVGPRLAMAA+AV + ++ +A G++ L +PGIGKR A
Sbjct 61 GFTDSPQQELFHLLQTVQGVGPRLAMAAIAVLEPAQMQSAIASGDIKTLCLIPGIGKRVA 120
Query 121 ERMVLELRDKVGVAAT--GGALSTNGHA--VRSPVVEALVGLGFAAKQAEEATDTVLAAN 176
ER+ +EL+DKV +T G A ++N + +++AL GLGF KQAE A + A
Sbjct 121 ERIHIELKDKVAAPSTSVGQAGTSNAPSGGTAQQLLDALEGLGFTPKQAEPAVAAAVEAG 180
Query 177 HDATTSSALRSALSLLGK 194
D S LR AL LG+
Sbjct 181 PDKPVSELLRDALKSLGR 198
Lambda K H
0.317 0.131 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 205411802368
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40