BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2594c
Length=188
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609731|ref|NP_217110.1| Holliday junction resolvase [Mycoba... 373 6e-102
gi|308232187|ref|ZP_07415205.2| crossover junction endodeoxyribo... 370 8e-101
gi|308371067|ref|ZP_07423718.2| crossover junction endodeoxyribo... 369 8e-101
gi|240173172|ref|ZP_04751830.1| Holliday junction resolvase [Myc... 306 1e-81
gi|15827158|ref|NP_301421.1| Holliday junction resolvase [Mycoba... 286 1e-75
gi|296170846|ref|ZP_06852407.1| crossover junction endoribonucle... 285 2e-75
gi|118617339|ref|YP_905671.1| Holliday junction resolvase [Mycob... 278 2e-73
gi|41407134|ref|NP_959970.1| Holliday junction resolvase [Mycoba... 273 7e-72
gi|254775924|ref|ZP_05217440.1| Holliday junction resolvase [Myc... 272 2e-71
gi|336461478|gb|EGO40347.1| crossover junction endodeoxyribonucl... 268 3e-70
gi|254821997|ref|ZP_05226998.1| Holliday junction resolvase [Myc... 263 1e-68
gi|342858579|ref|ZP_08715234.1| Holliday junction resolvase [Myc... 261 4e-68
gi|187611522|sp|A3PYW3.2|RUVC_MYCSJ RecName: Full=Crossover junc... 256 9e-67
gi|118473848|ref|YP_887262.1| Holliday junction resolvase [Mycob... 256 1e-66
gi|120403559|ref|YP_953388.1| Holliday junction resolvase [Mycob... 255 2e-66
gi|333991020|ref|YP_004523634.1| crossover junction endodeoxyrib... 250 6e-65
gi|145224408|ref|YP_001135086.1| Holliday junction resolvase [My... 250 7e-65
gi|315444740|ref|YP_004077619.1| Holliday junction endonuclease ... 248 3e-64
gi|108799232|ref|YP_639429.1| Holliday junction resolvase [Mycob... 247 7e-64
gi|262202230|ref|YP_003273438.1| crossover junction endodeoxyrib... 236 1e-60
gi|343924328|ref|ZP_08763879.1| crossover junction endodeoxyribo... 234 5e-60
gi|296139643|ref|YP_003646886.1| crossover junction endodeoxyrib... 228 3e-58
gi|336441076|gb|AEI54763.1| crossover junction endodeoxyribonucl... 225 2e-57
gi|54025667|ref|YP_119909.1| Holliday junction resolvase [Nocard... 224 3e-57
gi|336441080|gb|AEI54765.1| crossover junction endodeoxyribonucl... 220 8e-56
gi|326382126|ref|ZP_08203818.1| Holliday junction resolvase [Gor... 219 2e-55
gi|169629968|ref|YP_001703617.1| crossover junction endodeoxyrib... 215 3e-54
gi|337290895|ref|YP_004629916.1| crossover junction endodeoxyrib... 209 1e-52
gi|256375827|ref|YP_003099487.1| crossover junction endodeoxyrib... 209 2e-52
gi|336441074|gb|AEI54762.1| crossover junction endodeoxyribonucl... 208 3e-52
gi|300781058|ref|ZP_07090912.1| crossover junction endoribonucle... 208 3e-52
gi|317508677|ref|ZP_07966332.1| crossover junction endodeoxyribo... 207 5e-52
gi|257055536|ref|YP_003133368.1| Holliday junction resolvase [Sa... 207 6e-52
gi|305681296|ref|ZP_07404103.1| crossover junction endodeoxyribo... 206 9e-52
gi|336441078|gb|AEI54764.1| crossover junction endodeoxyribonucl... 206 1e-51
gi|225021301|ref|ZP_03710493.1| hypothetical protein CORMATOL_01... 206 1e-51
gi|145295782|ref|YP_001138603.1| Holliday junction resolvase [Co... 205 3e-51
gi|23308862|ref|NP_600874.2| Holliday junction resolvase [Coryne... 204 4e-51
gi|336325690|ref|YP_004605656.1| crossover junction endodeoxyrib... 204 6e-51
gi|300858595|ref|YP_003783578.1| crossover junction endodeoxyrib... 202 2e-50
gi|325001689|ref|ZP_08122801.1| Holliday junction resolvase [Pse... 202 2e-50
gi|333919482|ref|YP_004493063.1| Crossover junction endodeoxyrib... 201 4e-50
gi|134098595|ref|YP_001104256.1| Holliday junction resolvase [Sa... 201 4e-50
gi|344044894|gb|EGV40568.1| Holliday junction resolvase [Coryneb... 201 4e-50
gi|62390543|ref|YP_225945.1| Holliday junction resolvase [Coryne... 200 6e-50
gi|334564715|ref|ZP_08517706.1| Holliday junction resolvase [Cor... 200 8e-50
gi|340794511|ref|YP_004759974.1| crossover junction endodeoxyrib... 200 1e-49
gi|302206307|gb|ADL10649.1| Crossover junction endodeoxyribonucl... 199 1e-49
gi|68536133|ref|YP_250838.1| Holliday junction resolvase [Coryne... 198 4e-49
gi|296393858|ref|YP_003658742.1| crossover junction endodeoxyrib... 198 4e-49
>gi|15609731|ref|NP_217110.1| Holliday junction resolvase [Mycobacterium tuberculosis H37Rv]
gi|15842134|ref|NP_337171.1| Holliday junction resolvase [Mycobacterium tuberculosis CDC1551]
gi|31793778|ref|NP_856271.1| Holliday junction resolvase [Mycobacterium bovis AF2122/97]
71 more sequence titles
Length=188
Score = 373 bits (958), Expect = 6e-102, Method: Compositional matrix adjust.
Identities = 187/188 (99%), Positives = 188/188 (100%), Gaps = 0/188 (0%)
Query 1 VRVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH 60
+RVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH
Sbjct 1 MRVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH 60
Query 61 HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK 120
HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK
Sbjct 61 HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK 120
Query 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQQRHAY 180
AQVTAMVTKILALQAKPTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQQRHAY
Sbjct 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQQRHAY 180
Query 181 LAKLKAAR 188
LAKLKAAR
Sbjct 181 LAKLKAAR 188
>gi|308232187|ref|ZP_07415205.2| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis SUMu001]
gi|308369765|ref|ZP_07418969.2| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
tuberculosis SUMu002]
gi|308214723|gb|EFO74122.1| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis SUMu001]
gi|308326463|gb|EFP15314.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
tuberculosis SUMu002]
Length=186
Score = 370 bits (949), Expect = 8e-101, Method: Compositional matrix adjust.
Identities = 185/186 (99%), Positives = 186/186 (100%), Gaps = 0/186 (0%)
Query 3 VMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTHHP 62
+MGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTHHP
Sbjct 1 MMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTHHP 60
Query 63 EVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADKAQ 122
EVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADKAQ
Sbjct 61 EVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADKAQ 120
Query 123 VTAMVTKILALQAKPTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQQRHAYLA 182
VTAMVTKILALQAKPTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQQRHAYLA
Sbjct 121 VTAMVTKILALQAKPTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQQRHAYLA 180
Query 183 KLKAAR 188
KLKAAR
Sbjct 181 KLKAAR 186
>gi|308371067|ref|ZP_07423718.2| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis SUMu003]
gi|308372345|ref|ZP_07428318.2| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis SUMu004]
gi|308375541|ref|ZP_07444274.2| crossover junction endodeoxyribonuclease ruvC [Mycobacterium
tuberculosis SUMu007]
7 more sequence titles
Length=185
Score = 369 bits (948), Expect = 8e-101, Method: Compositional matrix adjust.
Identities = 185/185 (100%), Positives = 185/185 (100%), Gaps = 0/185 (0%)
Query 4 MGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTHHPE 63
MGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTHHPE
Sbjct 1 MGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTHHPE 60
Query 64 VVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADKAQV 123
VVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADKAQV
Sbjct 61 VVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADKAQV 120
Query 124 TAMVTKILALQAKPTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQQRHAYLAK 183
TAMVTKILALQAKPTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQQRHAYLAK
Sbjct 121 TAMVTKILALQAKPTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQQRHAYLAK 180
Query 184 LKAAR 188
LKAAR
Sbjct 181 LKAAR 185
>gi|240173172|ref|ZP_04751830.1| Holliday junction resolvase [Mycobacterium kansasii ATCC 12478]
Length=181
Score = 306 bits (784), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 163/185 (89%), Positives = 174/185 (95%), Gaps = 4/185 (2%)
Query 4 MGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTHHPE 63
MGVDPGLTRCGLSL+ESGRGR L ALDVDVVRTPSD AL++RLLAI++AVEHWLDTH P+
Sbjct 1 MGVDPGLTRCGLSLVESGRGRDLVALDVDVVRTPSDTALSKRLLAINEAVEHWLDTHRPD 60
Query 64 VVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADKAQV 123
V+AIERVFSQLNVTTVMGTAQAGGVIALAAAKR +DVHFHTPSEVKAAVTGNG+ADKAQV
Sbjct 61 VLAIERVFSQLNVTTVMGTAQAGGVIALAAAKRDIDVHFHTPSEVKAAVTGNGAADKAQV 120
Query 124 TAMVTKILALQAKPTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQQRHAYLAK 183
TAMVT+ILALQAKPTPADAADALALAICHCWRAP IAR+A RAEA AAQQRHAYLAK
Sbjct 121 TAMVTRILALQAKPTPADAADALALAICHCWRAPMIARIA----RAEALAAQQRHAYLAK 176
Query 184 LKAAR 188
LKAAR
Sbjct 177 LKAAR 181
>gi|15827158|ref|NP_301421.1| Holliday junction resolvase [Mycobacterium leprae TN]
gi|221229636|ref|YP_002503052.1| Holliday junction resolvase [Mycobacterium leprae Br4923]
gi|730697|sp|P40834.1|RUVC_MYCLE RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName: Full=Holliday
junction resolvase ruvC
gi|466822|gb|AAA17097.1| ruvC [Mycobacterium leprae]
gi|13092706|emb|CAC29989.1| crossover junction endodeoxyribonuclease [Mycobacterium leprae]
gi|219932743|emb|CAR70574.1| crossover junction endodeoxyribonuclease [Mycobacterium leprae
Br4923]
Length=188
Score = 286 bits (731), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 149/184 (81%), Positives = 168/184 (92%), Gaps = 4/184 (2%)
Query 1 VRVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH 60
+RVMGVDPGLTRCGLS++E+GRG Q+ ALDVDVVRTPSDA +++RLLA+SD VEHWLD H
Sbjct 1 MRVMGVDPGLTRCGLSVVENGRGSQVVALDVDVVRTPSDAPVSKRLLAVSDVVEHWLDAH 60
Query 61 HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK 120
HP+V+AIERVFSQ NV+TVMGTAQAGGVIALAAA+RG+DVHFHTPSEVKAAVTGNG+A+K
Sbjct 61 HPDVMAIERVFSQQNVSTVMGTAQAGGVIALAAARRGIDVHFHTPSEVKAAVTGNGAANK 120
Query 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQQRHAY 180
AQVTAMVT+ILALQAKPTPADAADALALAICHCWRAP IARMAE AEA A+ R AY
Sbjct 121 AQVTAMVTRILALQAKPTPADAADALALAICHCWRAPMIARMAE----AEALGARHRQAY 176
Query 181 LAKL 184
AK+
Sbjct 177 RAKV 180
>gi|296170846|ref|ZP_06852407.1| crossover junction endoribonuclease subunit C [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295894502|gb|EFG74243.1| crossover junction endoribonuclease subunit C [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length=184
Score = 285 bits (730), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 163/188 (87%), Positives = 175/188 (94%), Gaps = 4/188 (2%)
Query 1 VRVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH 60
+RVMGVDPGLTRCGLS++ESGRGR + ALDVDVVRTPSDA LA+RLLAISDAVEHWL TH
Sbjct 1 MRVMGVDPGLTRCGLSVVESGRGRSVVALDVDVVRTPSDAPLAKRLLAISDAVEHWLATH 60
Query 61 HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK 120
P+VVAIERVFSQLNV+TVMGTAQAGGV+ALAAAKRGVDVHFHTPSEVKAAVTGNG+ADK
Sbjct 61 QPDVVAIERVFSQLNVSTVMGTAQAGGVVALAAAKRGVDVHFHTPSEVKAAVTGNGAADK 120
Query 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQQRHAY 180
AQVTAMVTKILALQAKPTPADAADALALAICHCWRAP IAR+A AE AA+QR+AY
Sbjct 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRAPMIARLAA----AETLAARQRNAY 176
Query 181 LAKLKAAR 188
LAKLKAAR
Sbjct 177 LAKLKAAR 184
>gi|118617339|ref|YP_905671.1| Holliday junction resolvase [Mycobacterium ulcerans Agy99]
gi|183982123|ref|YP_001850414.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
marinum M]
gi|166233272|sp|A0PPD1.1|RUVC_MYCUA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName: Full=Holliday
junction resolvase ruvC
gi|238690932|sp|B2HN61.1|RUVC_MYCMM RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName: Full=Holliday
junction resolvase ruvC
gi|118569449|gb|ABL04200.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
ulcerans Agy99]
gi|183175449|gb|ACC40559.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
marinum M]
Length=184
Score = 278 bits (712), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 158/188 (85%), Positives = 173/188 (93%), Gaps = 4/188 (2%)
Query 1 VRVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH 60
+RVMGVDPGLTRCGLSLIESG+GRQLTALDVDVVRTPSDA L+ RLLAI++AVEHWL+TH
Sbjct 1 MRVMGVDPGLTRCGLSLIESGQGRQLTALDVDVVRTPSDAPLSSRLLAINEAVEHWLETH 60
Query 61 HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK 120
P+VVAIERVFSQ NV TVMGTAQAGGV+ALAAAKRGV+VHFHTPSEVKAAVTGNG+ADK
Sbjct 61 RPDVVAIERVFSQQNVKTVMGTAQAGGVVALAAAKRGVEVHFHTPSEVKAAVTGNGTADK 120
Query 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQQRHAY 180
AQVTAMVT+ILALQ KPTPADAADALALAICHCWRAP IA+MA+A + AE QQR +Y
Sbjct 121 AQVTAMVTRILALQTKPTPADAADALALAICHCWRAPMIAQMAKAHALAE----QQRRSY 176
Query 181 LAKLKAAR 188
AKLKAAR
Sbjct 177 TAKLKAAR 184
>gi|41407134|ref|NP_959970.1| Holliday junction resolvase [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118464158|ref|YP_882657.1| Holliday junction resolvase [Mycobacterium avium 104]
gi|81571427|sp|Q741Q2.1|RUVC_MYCPA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName: Full=Holliday
junction resolvase ruvC
gi|166233268|sp|A0QIB9.1|RUVC_MYCA1 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName: Full=Holliday
junction resolvase ruvC
gi|41395485|gb|AAS03353.1| RuvC [Mycobacterium avium subsp. paratuberculosis K-10]
gi|118165445|gb|ABK66342.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
avium 104]
Length=188
Score = 273 bits (699), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 159/192 (83%), Positives = 172/192 (90%), Gaps = 8/192 (4%)
Query 1 VRVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH 60
+RVMGVDPGLTRCGLS++ESGRGR + ALDVDVVRTPSDA LA+RLL+ISDAVEHWL TH
Sbjct 1 MRVMGVDPGLTRCGLSVVESGRGRTVVALDVDVVRTPSDAPLAERLLSISDAVEHWLATH 60
Query 61 HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK 120
P+VVAIERVFSQLNVTTVMGTAQAGGV+ALAAAKRG+ VHFHTPSEVKAAVTGNG+A+K
Sbjct 61 QPDVVAIERVFSQLNVTTVMGTAQAGGVVALAAAKRGIGVHFHTPSEVKAAVTGNGAANK 120
Query 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQQRHAY 180
AQVTAMVT+ILALQAKPTPADAADALALAICHCWRAP IARMA RAEA AAQQR Y
Sbjct 121 AQVTAMVTRILALQAKPTPADAADALALAICHCWRAPMIARMA----RAEALAAQQRQKY 176
Query 181 LAK----LKAAR 188
K L+AAR
Sbjct 177 KDKVDATLRAAR 188
>gi|254775924|ref|ZP_05217440.1| Holliday junction resolvase [Mycobacterium avium subsp. avium
ATCC 25291]
Length=188
Score = 272 bits (695), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 158/192 (83%), Positives = 172/192 (90%), Gaps = 8/192 (4%)
Query 1 VRVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH 60
+RVMGVDPGLTRCGLS++ESGRGR + ALDVDVVRTPS+A LA+RLL+ISDAVEHWL TH
Sbjct 1 MRVMGVDPGLTRCGLSVVESGRGRTVVALDVDVVRTPSEAPLAERLLSISDAVEHWLATH 60
Query 61 HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK 120
P+VVAIERVFSQLNVTTVMGTAQAGGV+ALAAAKRG+ VHFHTPSEVKAAVTGNG+A+K
Sbjct 61 QPDVVAIERVFSQLNVTTVMGTAQAGGVVALAAAKRGIGVHFHTPSEVKAAVTGNGAANK 120
Query 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQQRHAY 180
AQVTAMVT+ILALQAKPTPADAADALALAICHCWRAP IARMA RAEA AAQQR Y
Sbjct 121 AQVTAMVTRILALQAKPTPADAADALALAICHCWRAPMIARMA----RAEALAAQQRQKY 176
Query 181 LAK----LKAAR 188
K L+AAR
Sbjct 177 KDKVDATLRAAR 188
>gi|336461478|gb|EGO40347.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
avium subsp. paratuberculosis S397]
Length=175
Score = 268 bits (685), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 153/178 (86%), Positives = 165/178 (93%), Gaps = 4/178 (2%)
Query 1 VRVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH 60
+RVMGVDPGLTRCGLS++ESGRGR + ALDVDVVRTPSDA LA+RLL+ISDAVEHWL TH
Sbjct 1 MRVMGVDPGLTRCGLSVVESGRGRTVVALDVDVVRTPSDAPLAERLLSISDAVEHWLATH 60
Query 61 HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK 120
P+VVAIERVFSQLNVTTVMGTAQAGGV+ALAAAKRG+ VHFHTPSEVKAAVTGNG+A+K
Sbjct 61 QPDVVAIERVFSQLNVTTVMGTAQAGGVVALAAAKRGIGVHFHTPSEVKAAVTGNGAANK 120
Query 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQQRH 178
AQVTAMVT+ILALQAKPTPADAADALALAICHCWRAP IARMA RAEA AAQQR
Sbjct 121 AQVTAMVTRILALQAKPTPADAADALALAICHCWRAPMIARMA----RAEALAAQQRQ 174
>gi|254821997|ref|ZP_05226998.1| Holliday junction resolvase [Mycobacterium intracellulare ATCC
13950]
Length=184
Score = 263 bits (672), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 154/188 (82%), Positives = 169/188 (90%), Gaps = 4/188 (2%)
Query 1 VRVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH 60
+RVMGVDPGLTRCGLS++ESGRGR + ALDVDVVRTPSDA LA+RLL ISDAVEHWL TH
Sbjct 1 MRVMGVDPGLTRCGLSVVESGRGRTVVALDVDVVRTPSDAPLAERLLTISDAVEHWLATH 60
Query 61 HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK 120
P+V+A+ERVFSQLNV+TVMGTAQAGGV+ALAAA+RG+DVHFHTPSEVKAAVTGNG+ADK
Sbjct 61 EPDVMAVERVFSQLNVSTVMGTAQAGGVVALAAARRGIDVHFHTPSEVKAAVTGNGAADK 120
Query 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQQRHAY 180
AQVTAMVT+ILALQAKPTPADAADALALAICHCWRAP M + AEA AAQQR Y
Sbjct 121 AQVTAMVTRILALQAKPTPADAADALALAICHCWRAP----MIARMAAAEALAAQQRQKY 176
Query 181 LAKLKAAR 188
AKLKAAR
Sbjct 177 NAKLKAAR 184
>gi|342858579|ref|ZP_08715234.1| Holliday junction resolvase [Mycobacterium colombiense CECT 3035]
gi|342134283|gb|EGT87463.1| Holliday junction resolvase [Mycobacterium colombiense CECT 3035]
Length=188
Score = 261 bits (667), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 155/188 (83%), Positives = 166/188 (89%), Gaps = 4/188 (2%)
Query 1 VRVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH 60
+RVMGVDPGLTRCGLS++ESGRGR + ALDVDVVRTP+DA LAQRLL ISDAVEHWL TH
Sbjct 1 MRVMGVDPGLTRCGLSVVESGRGRTVVALDVDVVRTPADAPLAQRLLKISDAVEHWLATH 60
Query 61 HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK 120
P+VVAIERVFSQLNV+TVMGTAQAGGV+ALAAAKRGVDVHFHTPSEVKAAVTGNG ADK
Sbjct 61 RPDVVAIERVFSQLNVSTVMGTAQAGGVVALAAAKRGVDVHFHTPSEVKAAVTGNGGADK 120
Query 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQQRHAY 180
AQVTAMVT+ILALQAKP+PADAADALALAICHCWRAP M + AEA AAQQR Y
Sbjct 121 AQVTAMVTRILALQAKPSPADAADALALAICHCWRAP----MIARMAAAEALAAQQRQKY 176
Query 181 LAKLKAAR 188
AKL A R
Sbjct 177 KAKLDAKR 184
>gi|187611522|sp|A3PYW3.2|RUVC_MYCSJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName: Full=Holliday
junction resolvase ruvC
gi|187611523|sp|A1UFA2.2|RUVC_MYCSK RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName: Full=Holliday
junction resolvase ruvC
gi|187611524|sp|Q1B9R1.2|RUVC_MYCSS RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName: Full=Holliday
junction resolvase ruvC
Length=185
Score = 256 bits (655), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 144/188 (77%), Positives = 159/188 (85%), Gaps = 4/188 (2%)
Query 1 VRVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH 60
+RVMGVDPGLTRCGLS+IESG+GR++ ALDVDVVRTP+D L +RLL ISD VEHW+DTH
Sbjct 1 MRVMGVDPGLTRCGLSVIESGQGRKVIALDVDVVRTPADEQLHRRLLIISDTVEHWMDTH 60
Query 61 HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK 120
P+V+AIERVF+ N T MGTAQAGGVIALAAAKR +DVHFHTPSEVKAAVTGNG ADK
Sbjct 61 RPDVIAIERVFANHNANTAMGTAQAGGVIALAAAKRDIDVHFHTPSEVKAAVTGNGRADK 120
Query 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQQRHAY 180
AQVT MVT+ILALQAKPTPADAADALALAICHCWRAP IARMA A + A + Y
Sbjct 121 AQVTEMVTRILALQAKPTPADAADALALAICHCWRAPMIARMAAAEAMAAEARRK----Y 176
Query 181 LAKLKAAR 188
AKLKAAR
Sbjct 177 QAKLKAAR 184
>gi|118473848|ref|YP_887262.1| Holliday junction resolvase [Mycobacterium smegmatis str. MC2
155]
gi|166233270|sp|A0QWH4.1|RUVC_MYCS2 RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName: Full=Holliday
junction resolvase ruvC
gi|118175135|gb|ABK76031.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
smegmatis str. MC2 155]
Length=185
Score = 256 bits (653), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 139/188 (74%), Positives = 158/188 (85%), Gaps = 4/188 (2%)
Query 1 VRVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH 60
+RVMGVDPGLTRCGLS+IESG+GRQ+ ALDVDVVRTP+D L +RLL ISDA EHW+DTH
Sbjct 1 MRVMGVDPGLTRCGLSMIESGKGRQVIALDVDVVRTPADTPLQKRLLTISDAAEHWMDTH 60
Query 61 HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK 120
P+V+AIERVF+ N T MGTAQAGGVIALAAAKR ++VHFHTPSEVKAAVTG+G ADK
Sbjct 61 RPDVIAIERVFANQNANTAMGTAQAGGVIALAAAKRDIEVHFHTPSEVKAAVTGSGRADK 120
Query 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQQRHAY 180
+QVT MVT+ILALQAKPTPADAADALALAICHCWRAP + AEA A +QR +
Sbjct 121 SQVTEMVTRILALQAKPTPADAADALALAICHCWRAPM----IARMAAAEAMAEEQRRKF 176
Query 181 LAKLKAAR 188
AK+KAAR
Sbjct 177 QAKIKAAR 184
>gi|120403559|ref|YP_953388.1| Holliday junction resolvase [Mycobacterium vanbaalenii PYR-1]
gi|166233273|sp|A1T882.1|RUVC_MYCVP RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName: Full=Holliday
junction resolvase ruvC
gi|119956377|gb|ABM13382.1| Holliday junction endonuclease RuvC [Mycobacterium vanbaalenii
PYR-1]
Length=194
Score = 255 bits (652), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 141/184 (77%), Positives = 153/184 (84%), Gaps = 4/184 (2%)
Query 1 VRVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH 60
+RVMGVDPGLTRCGLS+IESG+GRQ+ ALDVDVVRTP+ LA RLLAISDAV+HWLDTH
Sbjct 1 MRVMGVDPGLTRCGLSVIESGKGRQVIALDVDVVRTPAGHPLAHRLLAISDAVDHWLDTH 60
Query 61 HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK 120
P+V+AIERVFS N T MGTAQAGGVIALAAA+R +DVHFHTPSEVKAAVTGNG ADK
Sbjct 61 RPDVIAIERVFSNQNANTAMGTAQAGGVIALAAARRDIDVHFHTPSEVKAAVTGNGRADK 120
Query 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQQRHAY 180
AQVT MVT+ILALQ KPTPADAADALALAICHCWRAP + RMA A A QR Y
Sbjct 121 AQVTEMVTRILALQQKPTPADAADALALAICHCWRAPMLGRMAAAEEMAAE----QRRKY 176
Query 181 LAKL 184
A L
Sbjct 177 QATL 180
>gi|333991020|ref|YP_004523634.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
sp. JDM601]
gi|333486988|gb|AEF36380.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
sp. JDM601]
Length=185
Score = 250 bits (639), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 148/188 (79%), Positives = 162/188 (87%), Gaps = 4/188 (2%)
Query 1 VRVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH 60
+RVMGVDPGLTRCGLS++E G GRQ+ ALDVDVVRTP+D L QRLL ISD EHWLDTH
Sbjct 1 MRVMGVDPGLTRCGLSVVEGGSGRQVIALDVDVVRTPADQPLPQRLLIISDTAEHWLDTH 60
Query 61 HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK 120
P+VVA+ERVFSQ NV+TVMGTAQAGGVIA+AAA+RG+DVHFHTPSEVKAAVTGNGSADK
Sbjct 61 RPDVVAVERVFSQQNVSTVMGTAQAGGVIAVAAARRGIDVHFHTPSEVKAAVTGNGSADK 120
Query 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQQRHAY 180
AQVTAMVT+IL LQ KPTPADAADALALAICHCWRAP M + AEA AA+QR Y
Sbjct 121 AQVTAMVTRILGLQQKPTPADAADALALAICHCWRAP----MIARMAAAEAMAAEQRRRY 176
Query 181 LAKLKAAR 188
AKLKAAR
Sbjct 177 AAKLKAAR 184
>gi|145224408|ref|YP_001135086.1| Holliday junction resolvase [Mycobacterium gilvum PYR-GCK]
gi|145216894|gb|ABP46298.1| Holliday junction endonuclease RuvC [Mycobacterium gilvum PYR-GCK]
Length=220
Score = 250 bits (639), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 147/186 (80%), Positives = 157/186 (85%), Gaps = 4/186 (2%)
Query 1 VRVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH 60
VRVMGVDPGLTRCGLS+IESGRGRQ+ ALDVDVVRTPSD LA RLLAIS+AVEHWLDTH
Sbjct 29 VRVMGVDPGLTRCGLSVIESGRGRQVIALDVDVVRTPSDHPLAHRLLAISNAVEHWLDTH 88
Query 61 HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK 120
P+V+AIERVFS N T MGTAQAGGV+ALAAA+R +DVHFHTPSEVKAAVTGNG ADK
Sbjct 89 RPDVIAIERVFSNQNANTAMGTAQAGGVVALAAARRDIDVHFHTPSEVKAAVTGNGRADK 148
Query 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQQRHAY 180
AQVT MVT+ILALQ KPTPADAADALALAICHCWRAP I+RMA A A QR Y
Sbjct 149 AQVTEMVTRILALQQKPTPADAADALALAICHCWRAPMISRMAAAEEMAAE----QRRKY 204
Query 181 LAKLKA 186
A LKA
Sbjct 205 QATLKA 210
>gi|315444740|ref|YP_004077619.1| Holliday junction endonuclease RuvC [Mycobacterium sp. Spyr1]
gi|315263043|gb|ADT99784.1| Holliday junction endonuclease RuvC [Mycobacterium sp. Spyr1]
Length=192
Score = 248 bits (633), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 146/186 (79%), Positives = 157/186 (85%), Gaps = 4/186 (2%)
Query 1 VRVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH 60
+RVMGVDPGLTRCGLS+IESGRGRQ+ ALDVDVVRTPSD LA RLLAIS+AVEHWLDTH
Sbjct 1 MRVMGVDPGLTRCGLSVIESGRGRQVIALDVDVVRTPSDHPLAHRLLAISNAVEHWLDTH 60
Query 61 HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK 120
P+V+AIERVFS N T MGTAQAGGV+ALAAA+R +DVHFHTPSEVKAAVTGNG ADK
Sbjct 61 RPDVIAIERVFSNQNANTAMGTAQAGGVVALAAARRDIDVHFHTPSEVKAAVTGNGRADK 120
Query 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQQRHAY 180
AQVT MVT+ILALQ KPTPADAADALALAICHCWRAP I+RMA A A QR Y
Sbjct 121 AQVTEMVTRILALQQKPTPADAADALALAICHCWRAPMISRMAAAEEMAAE----QRRKY 176
Query 181 LAKLKA 186
A LKA
Sbjct 177 QATLKA 182
>gi|108799232|ref|YP_639429.1| Holliday junction resolvase [Mycobacterium sp. MCS]
gi|119868348|ref|YP_938300.1| Holliday junction resolvase [Mycobacterium sp. KMS]
gi|126434890|ref|YP_001070581.1| Holliday junction resolvase [Mycobacterium sp. JLS]
gi|108769651|gb|ABG08373.1| Holliday junction endonuclease RuvC [Mycobacterium sp. MCS]
gi|119694437|gb|ABL91510.1| Holliday junction endonuclease RuvC [Mycobacterium sp. KMS]
gi|126234690|gb|ABN98090.1| Holliday junction endonuclease RuvC [Mycobacterium sp. JLS]
Length=193
Score = 247 bits (630), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 139/182 (77%), Positives = 153/182 (85%), Gaps = 4/182 (2%)
Query 7 DPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTHHPEVVA 66
DPGLTRCGLS+IESG+GR++ ALDVDVVRTP+D L +RLL ISD VEHW+DTH P+V+A
Sbjct 15 DPGLTRCGLSVIESGQGRKVIALDVDVVRTPADEQLHRRLLIISDTVEHWMDTHRPDVIA 74
Query 67 IERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADKAQVTAM 126
IERVF+ N T MGTAQAGGVIALAAAKR +DVHFHTPSEVKAAVTGNG ADKAQVT M
Sbjct 75 IERVFANHNANTAMGTAQAGGVIALAAAKRDIDVHFHTPSEVKAAVTGNGRADKAQVTEM 134
Query 127 VTKILALQAKPTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQQRHAYLAKLKA 186
VT+ILALQAKPTPADAADALALAICHCWRAP IARMA A + A + Y AKLKA
Sbjct 135 VTRILALQAKPTPADAADALALAICHCWRAPMIARMAAAEAMAAEARRK----YQAKLKA 190
Query 187 AR 188
AR
Sbjct 191 AR 192
>gi|262202230|ref|YP_003273438.1| crossover junction endodeoxyribonuclease RuvC [Gordonia bronchialis
DSM 43247]
gi|262085577|gb|ACY21545.1| crossover junction endodeoxyribonuclease RuvC [Gordonia bronchialis
DSM 43247]
Length=189
Score = 236 bits (602), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 122/162 (76%), Positives = 139/162 (86%), Gaps = 0/162 (0%)
Query 1 VRVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH 60
+RVMGVDPGLTRCG++L+ESGRGR +TALDVDVVRTP+D LA RLLA+ A HW+D H
Sbjct 1 MRVMGVDPGLTRCGIALVESGRGRAVTALDVDVVRTPTDMELADRLLAVYTAACHWIDVH 60
Query 61 HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK 120
P+VVAIERVF+Q V+T MGTAQAGGVIALAA +RG+ V FHTPSEVKAAVTG+G ADK
Sbjct 61 QPDVVAIERVFAQNQVSTAMGTAQAGGVIALAAGQRGIPVRFHTPSEVKAAVTGSGRADK 120
Query 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRAPTIARM 162
AQVTAMVT+IL +Q KP PADAADALALAICHCWR P + RM
Sbjct 121 AQVTAMVTRILGMQTKPRPADAADALALAICHCWRGPMMERM 162
>gi|343924328|ref|ZP_08763879.1| crossover junction endodeoxyribonuclease RuvC [Gordonia alkanivorans
NBRC 16433]
gi|343765762|dbj|GAA10805.1| crossover junction endodeoxyribonuclease RuvC [Gordonia alkanivorans
NBRC 16433]
Length=186
Score = 234 bits (596), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 122/159 (77%), Positives = 137/159 (87%), Gaps = 0/159 (0%)
Query 4 MGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTHHPE 63
MGVDPGLTRCG++L+ESGRGR +TALDVDVVRTPSD LA+RLLAI + HWLD H P+
Sbjct 1 MGVDPGLTRCGIALVESGRGRSVTALDVDVVRTPSDMDLAERLLAIYTSACHWLDVHQPD 60
Query 64 VVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADKAQV 123
VVAIERVF+Q V+T MGTAQAGGVIALAA++R V V FHTPSEVKAAVTG+G ADKAQV
Sbjct 61 VVAIERVFAQNQVSTAMGTAQAGGVIALAASQRDVPVRFHTPSEVKAAVTGSGRADKAQV 120
Query 124 TAMVTKILALQAKPTPADAADALALAICHCWRAPTIARM 162
TAMVT+IL +Q KP PADAADALALAICHCWR P + RM
Sbjct 121 TAMVTRILGMQTKPKPADAADALALAICHCWRGPMMERM 159
>gi|296139643|ref|YP_003646886.1| crossover junction endodeoxyribonuclease RuvC [Tsukamurella paurometabola
DSM 20162]
gi|296027777|gb|ADG78547.1| crossover junction endodeoxyribonuclease RuvC [Tsukamurella paurometabola
DSM 20162]
Length=215
Score = 228 bits (581), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 132/188 (71%), Positives = 155/188 (83%), Gaps = 4/188 (2%)
Query 1 VRVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH 60
+RVMGVDPGLTRCG S++E+G GR++ ALDVDVVRTPS L +RLLA+ A E W+DTH
Sbjct 1 MRVMGVDPGLTRCGFSVVETGSGRKVVALDVDVVRTPSTMPLPERLLAVWTAAEFWMDTH 60
Query 61 HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK 120
P+V+A+ERVF+Q NV+T MGTAQAGGV+ALAAA+RG+DVHFHTPSEVKAAVTGNG+A K
Sbjct 61 RPDVIAVERVFAQHNVSTAMGTAQAGGVVALAAARRGIDVHFHTPSEVKAAVTGNGNAGK 120
Query 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQQRHAY 180
AQVTAM+TKIL LQ P PADAADALALA+CH WRAP IARMAEA RAEA Q+ +
Sbjct 121 AQVTAMITKILGLQKAPEPADAADALALAVCHSWRAPMIARMAEAERRAEA----QKKVF 176
Query 181 LAKLKAAR 188
+L A R
Sbjct 177 EQRLAAQR 184
>gi|336441076|gb|AEI54763.1| crossover junction endodeoxyribonuclease [Mycobacterium bolletii]
gi|336441082|gb|AEI54766.1| crossover junction endodeoxyribonuclease [Mycobacterium massiliense]
Length=169
Score = 225 bits (574), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 123/171 (72%), Positives = 147/171 (86%), Gaps = 4/171 (2%)
Query 17 LIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTHHPEVVAIERVFSQLNV 76
++E+ GR++ ALDVDVVRTP++ L QRLL IS+ VEHW++TH P+VVAIERVF+Q NV
Sbjct 1 MVEASSGRKVVALDVDVVRTPANQPLPQRLLVISEVVEHWMETHRPDVVAIERVFAQQNV 60
Query 77 TTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADKAQVTAMVTKILALQAK 136
+TVMGTAQAGGVIAL AAKRG++V+FHTPSEVKAAVTGNG ADK+QVTAMVT+IL LQA
Sbjct 61 STVMGTAQAGGVIALCAAKRGIEVYFHTPSEVKAAVTGNGRADKSQVTAMVTRILNLQAA 120
Query 137 PTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQQRHAYLAKLKAA 187
P PADAADALALAICHCWRAP +ARMA +AEA A +QR A+ A++KAA
Sbjct 121 PKPADAADALALAICHCWRAPMLARMA----KAEAVAEEQRKAFAARMKAA 167
>gi|54025667|ref|YP_119909.1| Holliday junction resolvase [Nocardia farcinica IFM 10152]
gi|81602597|sp|Q5YTE6.1|RUVC_NOCFA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName: Full=Holliday
junction resolvase ruvC
gi|54017175|dbj|BAD58545.1| putative Holliday junction nuclease [Nocardia farcinica IFM 10152]
Length=189
Score = 224 bits (572), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 121/159 (77%), Positives = 137/159 (87%), Gaps = 0/159 (0%)
Query 1 VRVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH 60
+RVMGVDPGLTRCGLS++E G GR +TALDVDVVRTP+D LA RL+ ++DA E+W+DTH
Sbjct 1 MRVMGVDPGLTRCGLSMVEGGHGRTVTALDVDVVRTPADMDLAHRLMLVADAAEYWMDTH 60
Query 61 HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK 120
P VAIERVF+Q NV T MGTAQAGGVIALAAA+R + V FHTPSEVKAAVTGNG+ADK
Sbjct 61 RPGAVAIERVFAQHNVRTAMGTAQAGGVIALAAARRDIPVVFHTPSEVKAAVTGNGNADK 120
Query 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRAPTI 159
AQVTAMVT+IL LQ P PADAADALALAICHCWRAP +
Sbjct 121 AQVTAMVTRILGLQTAPKPADAADALALAICHCWRAPLL 159
>gi|336441080|gb|AEI54765.1| crossover junction endodeoxyribonuclease [Mycobacterium immunogenum]
Length=169
Score = 220 bits (560), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 124/171 (73%), Positives = 147/171 (86%), Gaps = 4/171 (2%)
Query 17 LIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTHHPEVVAIERVFSQLNV 76
++E+ GR++ ALDVDVVRTP++ L QRLLAIS+ VEHW+DTH PEVVAIERVF+Q NV
Sbjct 1 MVEASSGRKVVALDVDVVRTPANQPLPQRLLAISEVVEHWMDTHRPEVVAIERVFAQQNV 60
Query 77 TTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADKAQVTAMVTKILALQAK 136
+TVMGTAQAGGVIAL AAKRG++V+FHTPSEVKAAVTGNG ADK+QVTAMVT+IL LQA
Sbjct 61 STVMGTAQAGGVIALCAAKRGIEVYFHTPSEVKAAVTGNGRADKSQVTAMVTRILNLQAA 120
Query 137 PTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQQRHAYLAKLKAA 187
P PADAADALALAICHCWRAP +ARMA+A + A +QR A+ A++KAA
Sbjct 121 PKPADAADALALAICHCWRAPMLARMAKAEA----AAEKQRKAFAARMKAA 167
>gi|326382126|ref|ZP_08203818.1| Holliday junction resolvase [Gordonia neofelifaecis NRRL B-59395]
gi|326198856|gb|EGD56038.1| Holliday junction resolvase [Gordonia neofelifaecis NRRL B-59395]
Length=193
Score = 219 bits (557), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 132/185 (72%), Positives = 149/185 (81%), Gaps = 4/185 (2%)
Query 4 MGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTHHPE 63
MGVDPGLTRCG++L+ESG GR++TALDVDVVRTP+D LA+RLLAI HWLDTH P+
Sbjct 1 MGVDPGLTRCGIALVESGAGRKVTALDVDVVRTPADMDLAERLLAIHVGAVHWLDTHGPD 60
Query 64 VVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADKAQV 123
VVAIERVF+Q V+T MGTAQA GVIALAAA+R + V FHTPSEVKAAVTG+G ADKAQV
Sbjct 61 VVAIERVFAQRQVSTAMGTAQAAGVIALAAAQREIPVRFHTPSEVKAAVTGSGRADKAQV 120
Query 124 TAMVTKILALQAKPTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQQRHAYLAK 183
T MVT+IL +Q P PADAADALALAICHCWR P RM EA R AR AQ RH A+
Sbjct 121 TMMVTRILGMQTPPKPADAADALALAICHCWRGPVNDRMEEAAKR--AREAQNRHR--AR 176
Query 184 LKAAR 188
LKAA+
Sbjct 177 LKAAQ 181
>gi|169629968|ref|YP_001703617.1| crossover junction endodeoxyribonuclease RuvC [Mycobacterium
abscessus ATCC 19977]
gi|169241935|emb|CAM62963.1| Probable crossover junction endodeoxyribonuclease RuvC [Mycobacterium
abscessus]
gi|336441072|gb|AEI54761.1| crossover junction endodeoxyribonuclease [Mycobacterium abscessus]
Length=169
Score = 215 bits (547), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 118/161 (74%), Positives = 139/161 (87%), Gaps = 4/161 (2%)
Query 17 LIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTHHPEVVAIERVFSQLNV 76
++E+ GR++ ALDVDVVRTP++ L QRLL IS+ VEHW++TH P+VVAIERVF+Q NV
Sbjct 1 MVEASSGRKVVALDVDVVRTPANQPLPQRLLVISEVVEHWMETHRPDVVAIERVFAQQNV 60
Query 77 TTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADKAQVTAMVTKILALQAK 136
+TVMGTAQAGGVIAL AAKRG++V+FHTPSEVKAAVTGNG ADK+QVTAMVT+IL LQA
Sbjct 61 STVMGTAQAGGVIALCAAKRGIEVYFHTPSEVKAAVTGNGRADKSQVTAMVTRILNLQAA 120
Query 137 PTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQQR 177
P PADAADALALAICHCWRAP +ARMA +AEA A +QR
Sbjct 121 PKPADAADALALAICHCWRAPMLARMA----KAEAVAEEQR 157
>gi|337290895|ref|YP_004629916.1| crossover junction endodeoxyribonuclease [Corynebacterium ulcerans
BR-AD22]
gi|334697008|gb|AEG81805.1| crossover junction endodeoxyribonuclease [Corynebacterium ulcerans
809]
gi|334699201|gb|AEG83997.1| crossover junction endodeoxyribonuclease [Corynebacterium ulcerans
BR-AD22]
Length=193
Score = 209 bits (532), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 111/185 (60%), Positives = 139/185 (76%), Gaps = 6/185 (3%)
Query 1 VRVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH 60
+RVMG+DPGLTRCGLS++++GRGRQ+ + V VVRTP A L RLL +SDAV W+D +
Sbjct 6 LRVMGIDPGLTRCGLSVVQAGRGRQVMPIAVGVVRTPPQADLTVRLLELSDAVNEWMDEY 65
Query 61 HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK 120
P+VVAIER+F + NV+TVM TA GV+ LAAA+RG+DVH +TPSE K A++GNG ADK
Sbjct 66 QPDVVAIERIFERGNVSTVMHTAHGVGVLVLAAAQRGIDVHMYTPSEAKKAISGNGRADK 125
Query 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQQ--RH 178
Q+TAM+T+IL L P PADAADALALA+CHCWRAP M E R E ++ +Q R
Sbjct 126 KQMTAMITRILGLSEPPKPADAADALALAVCHCWRAP----MLEIQRRTEKQSTEQKKRL 181
Query 179 AYLAK 183
A LAK
Sbjct 182 ALLAK 186
>gi|256375827|ref|YP_003099487.1| crossover junction endodeoxyribonuclease RuvC [Actinosynnema
mirum DSM 43827]
gi|255920130|gb|ACU35641.1| crossover junction endodeoxyribonuclease RuvC [Actinosynnema
mirum DSM 43827]
Length=330
Score = 209 bits (531), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 114/169 (68%), Positives = 138/169 (82%), Gaps = 0/169 (0%)
Query 1 VRVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH 60
+RV GVDPGLTRCG +++ G GR + + VDVVRTP+D L++RLL ++DAVE WLD +
Sbjct 1 MRVFGVDPGLTRCGFGVVDGGTGRTVRPVAVDVVRTPADEDLSRRLLQLADAVEVWLDRY 60
Query 61 HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK 120
P+VVAIERVFSQ NV T MGTAQAGG++ALAAA+R + V FHTPSEVKAAVTG+G ADK
Sbjct 61 SPDVVAIERVFSQHNVRTAMGTAQAGGIVALAAARRDLPVEFHTPSEVKAAVTGSGRADK 120
Query 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRAPTIARMAEATSRA 169
AQVTAMVTK+L L+ P PADAADALALAICH WRAP +R+ +A +RA
Sbjct 121 AQVTAMVTKVLGLKVAPRPADAADALALAICHLWRAPMKSRLEQAQARA 169
>gi|336441074|gb|AEI54762.1| crossover junction endodeoxyribonuclease [Mycobacterium franklinii]
Length=169
Score = 208 bits (529), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 109/143 (77%), Positives = 128/143 (90%), Gaps = 0/143 (0%)
Query 17 LIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTHHPEVVAIERVFSQLNV 76
++E+ GR++ ALDVDVVRTP++ AL QRLLAIS+ VEHW+DTH P+V+AIERVF+Q NV
Sbjct 1 MVEASSGRKVVALDVDVVRTPANQALPQRLLAISEVVEHWMDTHRPDVIAIERVFAQQNV 60
Query 77 TTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADKAQVTAMVTKILALQAK 136
+TVMGTAQAGGVIAL AAKRG++V+FHTPSEVKAAVTGNG ADK+QVTAMVT+IL LQ
Sbjct 61 STVMGTAQAGGVIALCAAKRGIEVYFHTPSEVKAAVTGNGRADKSQVTAMVTRILNLQTA 120
Query 137 PTPADAADALALAICHCWRAPTI 159
P PADAADALALAICHCWRAP +
Sbjct 121 PKPADAADALALAICHCWRAPML 143
>gi|300781058|ref|ZP_07090912.1| crossover junction endoribonuclease subunit C [Corynebacterium
genitalium ATCC 33030]
gi|300532765|gb|EFK53826.1| crossover junction endoribonuclease subunit C [Corynebacterium
genitalium ATCC 33030]
Length=181
Score = 208 bits (529), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 105/161 (66%), Positives = 133/161 (83%), Gaps = 0/161 (0%)
Query 1 VRVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH 60
+RVMG+DPGLTRCGLS+I++G+GRQ+ + V VVRTPSDA LA RLL +S AVE W+D +
Sbjct 6 LRVMGIDPGLTRCGLSVIQAGKGRQVIPVAVGVVRTPSDAELAHRLLRLSQAVEEWIDDY 65
Query 61 HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK 120
P+V+A+ER+F + NV+TVM TA A GV+ LAAAKR + VH +TPSEVK AV+GNG ADK
Sbjct 66 QPDVIAMERIFERGNVSTVMHTAHAVGVMVLAAAKRDIPVHMYTPSEVKKAVSGNGRADK 125
Query 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRAPTIAR 161
Q+T+M+T+IL L A P PADAADALA+A+CHCWRAP +AR
Sbjct 126 KQMTSMITRILGLGAPPKPADAADALAIAVCHCWRAPLLAR 166
>gi|317508677|ref|ZP_07966332.1| crossover junction endodeoxyribonuclease RuvC [Segniliparus rugosus
ATCC BAA-974]
gi|316252998|gb|EFV12413.1| crossover junction endodeoxyribonuclease RuvC [Segniliparus rugosus
ATCC BAA-974]
Length=189
Score = 207 bits (528), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 116/175 (67%), Positives = 137/175 (79%), Gaps = 0/175 (0%)
Query 1 VRVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH 60
+RVMG+DPGLTRCGL+L+E+G GR++TALDVDV RT +L RL I+D VEHWLD+H
Sbjct 1 MRVMGIDPGLTRCGLALVEAGAGRKVTALDVDVCRTSPQDSLQHRLSRIADEVEHWLDSH 60
Query 61 HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK 120
P+VVA+E+VF+Q NV TVMG AQ GV+AL AA+R + V HTPSEVKAAVTGNG ADK
Sbjct 61 RPDVVAVEQVFAQHNVRTVMGVAQVSGVVALLAARRSIPVRTHTPSEVKAAVTGNGRADK 120
Query 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQ 175
QVTAMVT+IL L+ KP PADAADALALAICHCWRAP + R A A R A+
Sbjct 121 DQVTAMVTRILGLKVKPAPADAADALALAICHCWRAPLLGRAAVAGEARPNRLAE 175
>gi|257055536|ref|YP_003133368.1| Holliday junction resolvase [Saccharomonospora viridis DSM 43017]
gi|256585408|gb|ACU96541.1| Holliday junction endonuclease RuvC [Saccharomonospora viridis
DSM 43017]
Length=196
Score = 207 bits (527), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 116/157 (74%), Positives = 135/157 (86%), Gaps = 0/157 (0%)
Query 1 VRVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH 60
+RV+GVDPGLTRCGL +++ G GR +T + VDVVRTP +A +AQRLL I DAVE WLDT+
Sbjct 1 MRVLGVDPGLTRCGLGVVDGGVGRSITGVAVDVVRTPVEAEVAQRLLRIGDAVEEWLDTY 60
Query 61 HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK 120
P+VVA+ERVFSQ NV TVMGTAQAGGV+AL AA+RG+ V FHTPSEVKAAVTG+G ADK
Sbjct 61 RPDVVAVERVFSQHNVRTVMGTAQAGGVVALCAARRGLPVAFHTPSEVKAAVTGSGRADK 120
Query 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRAP 157
AQVTAMVT++L L KP+PADAADALALAICH WRAP
Sbjct 121 AQVTAMVTRLLGLSKKPSPADAADALALAICHLWRAP 157
>gi|305681296|ref|ZP_07404103.1| crossover junction endodeoxyribonuclease RuvC [Corynebacterium
matruchotii ATCC 14266]
gi|305659501|gb|EFM49001.1| crossover junction endodeoxyribonuclease RuvC [Corynebacterium
matruchotii ATCC 14266]
Length=235
Score = 206 bits (525), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 108/177 (62%), Positives = 140/177 (80%), Gaps = 0/177 (0%)
Query 1 VRVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH 60
+RVMG+DPGLTRCGLS++++GRGR + + V VVRTPSD+ +A RLL +S+A WLD +
Sbjct 21 MRVMGIDPGLTRCGLSVVQAGRGRSVIPVAVGVVRTPSDSDIAHRLLELSEAANDWLDQY 80
Query 61 HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK 120
P+VVAIER+F + NV+TVM TA GV+ LAAA+RG+DVH +TPSEVK A++GNG ADK
Sbjct 81 QPDVVAIERIFERGNVSTVMNTAHGVGVLMLAAAQRGIDVHLYTPSEVKKAISGNGRADK 140
Query 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQQR 177
Q+TAM+T+IL L P PADAADALALA+CHCWRAP + EA +RA+A++ QR
Sbjct 141 KQMTAMITRILGLTEAPKPADAADALALAVCHCWRAPLLITNREAEARAQAQSRHQR 197
>gi|336441078|gb|AEI54764.1| crossover junction endodeoxyribonuclease [Mycobacterium chelonae]
Length=169
Score = 206 bits (524), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 106/143 (75%), Positives = 128/143 (90%), Gaps = 0/143 (0%)
Query 17 LIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTHHPEVVAIERVFSQLNV 76
++E+ GR++ ALDVDVVRTP++ L QRLLAIS+ VEHW+DTH P+VVAIERVF+Q NV
Sbjct 1 MVEASSGRKVVALDVDVVRTPANQPLPQRLLAISEVVEHWMDTHRPDVVAIERVFAQQNV 60
Query 77 TTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADKAQVTAMVTKILALQAK 136
+TVMGTAQAGG++AL+AAKRG++V+FHTPSEVKAAVTGNG ADK+QVTAM+T+IL LQ
Sbjct 61 STVMGTAQAGGIVALSAAKRGIEVYFHTPSEVKAAVTGNGRADKSQVTAMITRILQLQTA 120
Query 137 PTPADAADALALAICHCWRAPTI 159
P PADAADALALAICHCWRAP +
Sbjct 121 PKPADAADALALAICHCWRAPML 143
>gi|225021301|ref|ZP_03710493.1| hypothetical protein CORMATOL_01320 [Corynebacterium matruchotii
ATCC 33806]
gi|224946034|gb|EEG27243.1| hypothetical protein CORMATOL_01320 [Corynebacterium matruchotii
ATCC 33806]
Length=223
Score = 206 bits (524), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 108/177 (62%), Positives = 140/177 (80%), Gaps = 0/177 (0%)
Query 1 VRVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH 60
+RVMG+DPGLTRCGLS++++GRGR + + V VVRTPSD+ +A RLL +S+A WLD +
Sbjct 9 MRVMGIDPGLTRCGLSVVQAGRGRSVIPVAVGVVRTPSDSDIAHRLLELSEAANDWLDQY 68
Query 61 HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK 120
P+VVAIER+F + NV+TVM TA GV+ LAAA+RG+DVH +TPSEVK A++GNG ADK
Sbjct 69 QPDVVAIERIFERGNVSTVMNTAHGVGVLMLAAAQRGIDVHLYTPSEVKKAISGNGRADK 128
Query 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQQR 177
Q+TAM+T+IL L P PADAADALALA+CHCWRAP + EA +RA+A++ QR
Sbjct 129 KQMTAMITRILGLTEAPKPADAADALALAVCHCWRAPLLITNREAEARAQAQSRHQR 185
>gi|145295782|ref|YP_001138603.1| Holliday junction resolvase [Corynebacterium glutamicum R]
gi|140845702|dbj|BAF54701.1| hypothetical protein [Corynebacterium glutamicum R]
Length=242
Score = 205 bits (521), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 108/188 (58%), Positives = 138/188 (74%), Gaps = 2/188 (1%)
Query 1 VRVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH 60
+RVMG+DPGLTRCGLS++++GRGR + + V VVRTP DA LA+RLL +S AV W+D +
Sbjct 27 LRVMGIDPGLTRCGLSVVQAGRGRTVYPVSVGVVRTPPDAELAERLLRLSKAVGEWMDEY 86
Query 61 HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK 120
P+VVAIERVF + NV+TVM TA A GV+ LAAA+RG+ VH +TPSEVK A++GNG ADK
Sbjct 87 TPDVVAIERVFERGNVSTVMNTAHAVGVLILAAAERGLPVHMYTPSEVKKAISGNGRADK 146
Query 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQQRHAY 180
Q+T M+T+IL L P PADAADAL+LA+CHCWRAP + R S E ++R
Sbjct 147 KQMTVMITRILGLGEPPKPADAADALSLAVCHCWRAPMLMRAQSQYSEQELE--KRRRVQ 204
Query 181 LAKLKAAR 188
KL A+
Sbjct 205 QGKLGKAK 212
>gi|23308862|ref|NP_600874.2| Holliday junction resolvase [Corynebacterium glutamicum ATCC
13032]
gi|24638206|sp|Q9AE11.1|RUVC_CORGL RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName: Full=Holliday
junction resolvase ruvC
gi|13346822|gb|AAK19838.1|AF331924_3 crossover junction endodeoxyribonuclease RuvC [Corynebacterium
glutamicum]
gi|21324431|dbj|BAB99055.1| Holliday junction resolvasome endonuclease subunit [Corynebacterium
glutamicum ATCC 13032]
Length=221
Score = 204 bits (519), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 107/188 (57%), Positives = 138/188 (74%), Gaps = 2/188 (1%)
Query 1 VRVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH 60
+RVMG+DPGLTRCGLS++++GRGR + + V VVRTP DA LA+RLL +S AV W+D +
Sbjct 6 LRVMGIDPGLTRCGLSVVQAGRGRTVYPVSVGVVRTPPDAELAERLLRLSKAVGEWMDEY 65
Query 61 HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK 120
P+V+AIERVF + NV+TVM TA A GV+ LAAA+RG+ VH +TPSEVK A++GNG ADK
Sbjct 66 TPDVIAIERVFERGNVSTVMNTAHAVGVLILAAAERGLPVHMYTPSEVKKAISGNGRADK 125
Query 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQQRHAY 180
Q+T M+T+IL L P PADAADAL+LA+CHCWRAP + R S E ++R
Sbjct 126 KQMTVMITRILGLGEPPKPADAADALSLAVCHCWRAPMLMRAQSQYSEQELE--KRRRVQ 183
Query 181 LAKLKAAR 188
KL A+
Sbjct 184 QGKLGKAK 191
>gi|336325690|ref|YP_004605656.1| crossover junction endodeoxyribonuclease [Corynebacterium resistens
DSM 45100]
gi|336101672|gb|AEI09492.1| crossover junction endodeoxyribonuclease [Corynebacterium resistens
DSM 45100]
Length=248
Score = 204 bits (518), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 103/157 (66%), Positives = 128/157 (82%), Gaps = 0/157 (0%)
Query 1 VRVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH 60
+RVMG+DPGLTRCGLS++++GRGR + + V VVRTP+ +L RLL +S+AVE W+D +
Sbjct 83 LRVMGIDPGLTRCGLSVVQAGRGRAVLPVAVGVVRTPASDSLTSRLLRLSNAVEEWMDEY 142
Query 61 HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK 120
P+VVA+ERVF + NV+TVM TA A GV+ LAAAKRG+DVH +TPSEVK A+TGNG ADK
Sbjct 143 KPDVVALERVFERSNVSTVMNTAHASGVLMLAAAKRGLDVHMYTPSEVKKAITGNGRADK 202
Query 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRAP 157
Q+T MVT+IL L P PADAADALALA+CHCWRAP
Sbjct 203 PQMTNMVTRILGLGEPPKPADAADALALAVCHCWRAP 239
>gi|300858595|ref|YP_003783578.1| crossover junction endodeoxyribonuclease [Corynebacterium pseudotuberculosis
FRC41]
gi|300686049|gb|ADK28971.1| crossover junction endodeoxyribonuclease [Corynebacterium pseudotuberculosis
FRC41]
gi|302330864|gb|ADL21058.1| Crossover junction endodeoxyribonuclease ruvC [Corynebacterium
pseudotuberculosis 1002]
Length=193
Score = 202 bits (514), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 104/176 (60%), Positives = 133/176 (76%), Gaps = 4/176 (2%)
Query 1 VRVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH 60
+RVMG+DPGLTRCGLS++++GRGRQ+ + V VVRTP A L RLL +SD W+D +
Sbjct 6 LRVMGIDPGLTRCGLSVVQAGRGRQVMPIAVGVVRTPPHADLTVRLLELSDTANEWMDEY 65
Query 61 HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK 120
P+VVAIER+F + NV+TVM TA GV+ LAAA+RG+DVH +TPSE K A++GNG ADK
Sbjct 66 QPDVVAIERIFERGNVSTVMHTAHGVGVLVLAAAQRGIDVHMYTPSEAKKAISGNGRADK 125
Query 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQQ 176
Q+TAM+T+IL L P PADAADALALA+CHCWRAP M E + E ++A+Q
Sbjct 126 KQMTAMITRILGLSEPPKPADAADALALAVCHCWRAP----MLEIQRKTERQSAEQ 177
>gi|325001689|ref|ZP_08122801.1| Holliday junction resolvase [Pseudonocardia sp. P1]
Length=159
Score = 202 bits (513), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 105/159 (67%), Positives = 128/159 (81%), Gaps = 0/159 (0%)
Query 1 VRVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH 60
+RV+GVDPGLTRCG+ ++ESG GR ++ +DV VVR+ +D AL +RLL ++D VE W+ H
Sbjct 1 MRVLGVDPGLTRCGIGVVESGEGRSVSFVDVGVVRSGTDLALERRLLTVADEVERWIARH 60
Query 61 HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK 120
P+V+A+ERVFSQ NV TVMGTAQA GV+AL AA+ G+ V FHTPSEVKAAVTG G A K
Sbjct 61 RPDVIAVERVFSQHNVRTVMGTAQASGVVALVAARAGLPVAFHTPSEVKAAVTGEGRAGK 120
Query 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRAPTI 159
AQVT MVTK+L L P PADAADALALAICHCWR+P +
Sbjct 121 AQVTTMVTKVLGLDTPPKPADAADALALAICHCWRSPML 159
>gi|333919482|ref|YP_004493063.1| Crossover junction endodeoxyribonuclease ruvC [Amycolicicoccus
subflavus DQS3-9A1]
gi|333481703|gb|AEF40263.1| Crossover junction endodeoxyribonuclease ruvC [Amycolicicoccus
subflavus DQS3-9A1]
Length=199
Score = 201 bits (512), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 124/188 (66%), Positives = 146/188 (78%), Gaps = 4/188 (2%)
Query 1 VRVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH 60
+RVMGVDPGLTRCGL ++++G GR++ + VDVVRTP D L+ RLL I+ A E W+D H
Sbjct 1 MRVMGVDPGLTRCGLGIVDAGSGREVAPIAVDVVRTPPDLELSARLLRIATAAEEWMDLH 60
Query 61 HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK 120
P VVAIERVFSQ NV++VMGTAQAGGV+ALAAA+RG+ V FHTPS+VK+AVTGNGSA K
Sbjct 61 RPSVVAIERVFSQHNVSSVMGTAQAGGVVALAAARRGIPVAFHTPSQVKSAVTGNGSAGK 120
Query 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQQRHAY 180
QV AMVT+IL L P PADAADALALAICHCWRAP + RMA+A A AA R Y
Sbjct 121 EQVIAMVTRILNLPTPPRPADAADALALAICHCWRAPMLDRMAQAE----ALAATARKKY 176
Query 181 LAKLKAAR 188
A+L A R
Sbjct 177 QARLAAER 184
>gi|134098595|ref|YP_001104256.1| Holliday junction resolvase [Saccharopolyspora erythraea NRRL
2338]
gi|291008208|ref|ZP_06566181.1| crossover junction endodeoxyribonuclease RuvC [Saccharopolyspora
erythraea NRRL 2338]
gi|166233295|sp|A4FBA6.1|RUVC_SACEN RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
AltName: Full=Holliday junction nuclease ruvC; AltName: Full=Holliday
junction resolvase ruvC
gi|133911218|emb|CAM01331.1| crossover junction endodeoxyribonuclease RuvC [Saccharopolyspora
erythraea NRRL 2338]
Length=199
Score = 201 bits (511), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 108/161 (68%), Positives = 130/161 (81%), Gaps = 0/161 (0%)
Query 1 VRVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH 60
+RV+GVDPGLTRCG+ +++ GRGR +T + V V RTP+D L+ RLL +++AV+ WLDTH
Sbjct 1 MRVLGVDPGLTRCGIGVVDGGRGRTVTCVGVGVARTPADQELSARLLGVAEAVDEWLDTH 60
Query 61 HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK 120
PEVVAIERVFSQ NV TVMGTAQ G++ALAAA+RG+ V FHTPSEVKAA++G+G ADK
Sbjct 61 RPEVVAIERVFSQHNVRTVMGTAQVSGIVALAAARRGLPVAFHTPSEVKAAISGSGRADK 120
Query 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRAPTIAR 161
QVT MVTKIL L P PADAADALALA+CH WRAP R
Sbjct 121 RQVTTMVTKILGLAEAPKPADAADALALAVCHLWRAPMAGR 161
>gi|344044894|gb|EGV40568.1| Holliday junction resolvase [Corynebacterium glutamicum S9114]
Length=213
Score = 201 bits (511), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 106/185 (58%), Positives = 135/185 (73%), Gaps = 2/185 (1%)
Query 4 MGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTHHPE 63
MG+DPGLTRCGLS++++GRGR + + V VVRTP DA LA+RLL +S AV W+D + P+
Sbjct 1 MGIDPGLTRCGLSVVQAGRGRTVYPVSVGVVRTPPDAELAERLLRLSKAVGEWMDEYTPD 60
Query 64 VVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADKAQV 123
VVAIERVF + NV+TVM TA A GV+ LAAA+RG+ VH +TPSEVK A++GNG ADK Q+
Sbjct 61 VVAIERVFERGNVSTVMNTAHAVGVLILAAAERGLPVHMYTPSEVKKAISGNGRADKKQM 120
Query 124 TAMVTKILALQAKPTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQQRHAYLAK 183
T M+T+IL L P PADAADAL+LA+CHCWRAP + R S E ++R K
Sbjct 121 TVMITRILGLGEPPKPADAADALSLAVCHCWRAPMLMRAQSQYSEQELE--KRRRVQQGK 178
Query 184 LKAAR 188
L A+
Sbjct 179 LGKAK 183
>gi|62390543|ref|YP_225945.1| Holliday junction resolvase [Corynebacterium glutamicum ATCC
13032]
gi|41325881|emb|CAF20044.1| CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE [Corynebacterium glutamicum
ATCC 13032]
Length=213
Score = 200 bits (509), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 105/185 (57%), Positives = 135/185 (73%), Gaps = 2/185 (1%)
Query 4 MGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTHHPE 63
MG+DPGLTRCGLS++++GRGR + + V VVRTP DA LA+RLL +S AV W+D + P+
Sbjct 1 MGIDPGLTRCGLSVVQAGRGRTVYPVSVGVVRTPPDAELAERLLRLSKAVGEWMDEYTPD 60
Query 64 VVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADKAQV 123
V+AIERVF + NV+TVM TA A GV+ LAAA+RG+ VH +TPSEVK A++GNG ADK Q+
Sbjct 61 VIAIERVFERGNVSTVMNTAHAVGVLILAAAERGLPVHMYTPSEVKKAISGNGRADKKQM 120
Query 124 TAMVTKILALQAKPTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQQRHAYLAK 183
T M+T+IL L P PADAADAL+LA+CHCWRAP + R S E ++R K
Sbjct 121 TVMITRILGLGEPPKPADAADALSLAVCHCWRAPMLMRAQSQYSEQELE--KRRRVQQGK 178
Query 184 LKAAR 188
L A+
Sbjct 179 LGKAK 183
>gi|334564715|ref|ZP_08517706.1| Holliday junction resolvase [Corynebacterium bovis DSM 20582]
Length=215
Score = 200 bits (509), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 103/162 (64%), Positives = 130/162 (81%), Gaps = 0/162 (0%)
Query 1 VRVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH 60
+RVMG+DPGLTRCGLS++++ RGR + + V VVRTP+D LAQRL +SDAVE W+D +
Sbjct 50 LRVMGIDPGLTRCGLSVVQAARGRAVLPVAVGVVRTPADLELAQRLRRLSDAVEEWMDDY 109
Query 61 HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK 120
P+VVA+ERVF + NV+TVM TA A GV+ L+AA+R + VH +TPSEVK AV+GNG ADK
Sbjct 110 APDVVAVERVFERGNVSTVMNTAHASGVLMLSAARRDIPVHLYTPSEVKKAVSGNGRADK 169
Query 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRAPTIARM 162
Q+TAM+T+IL L P PADAADALALA+CHCWRAP AR+
Sbjct 170 QQMTAMITRILGLTEPPRPADAADALALAVCHCWRAPMNARL 211
>gi|340794511|ref|YP_004759974.1| crossover junction endodeoxyribonuclease [Corynebacterium variabile
DSM 44702]
gi|340534421|gb|AEK36901.1| crossover junction endodeoxyribonuclease [Corynebacterium variabile
DSM 44702]
Length=185
Score = 200 bits (508), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 107/175 (62%), Positives = 134/175 (77%), Gaps = 3/175 (1%)
Query 1 VRVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH 60
+RVMG+DPGLTRCGLS++++G GR + + V VVRTP + L +RLL +S AVE W+D +
Sbjct 4 LRVMGIDPGLTRCGLSVVQAGHGRAVLPVAVGVVRTPHEIPLQERLLRLSVAVEEWMDDY 63
Query 61 HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK 120
PEVVAIERVF + NV+TVM TA A GV+ L+AA+RG+ VH +TPSE K A+TGNG ADK
Sbjct 64 SPEVVAIERVFERGNVSTVMNTAHAVGVLMLSAARRGIPVHQYTPSEAKKALTGNGRADK 123
Query 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRAPTIAR---MAEATSRAEAR 172
Q+T+MVT+IL L P PADAADALALA+CHCWRAP IAR +AE + R R
Sbjct 124 KQMTSMVTRILGLSEPPRPADAADALALAVCHCWRAPFIARTEHLAELSGRQNTR 178
>gi|302206307|gb|ADL10649.1| Crossover junction endodeoxyribonuclease ruvC [Corynebacterium
pseudotuberculosis C231]
gi|308276549|gb|ADO26448.1| Crossover junction endodeoxyribonuclease ruvC [Corynebacterium
pseudotuberculosis I19]
gi|341824991|gb|AEK92512.1| Crossover junction endodeoxyribonuclease ruvC [Corynebacterium
pseudotuberculosis PAT10]
Length=193
Score = 199 bits (507), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 104/176 (60%), Positives = 133/176 (76%), Gaps = 4/176 (2%)
Query 1 VRVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH 60
+RVMG+DPGLTRCGLS++++GRGRQ+ + V VVRTP A L RLL +SDA W+D +
Sbjct 6 LRVMGIDPGLTRCGLSVVQAGRGRQVMPIAVGVVRTPPHADLTVRLLELSDAANEWMDEY 65
Query 61 HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK 120
P+VVAIER+F + NV+TVM TA GV+ LAAA+RG+DVH +TPSE K A++GNG ADK
Sbjct 66 QPDVVAIERIFERGNVSTVMHTAHGVGVLVLAAAQRGIDVHMYTPSEAKKAISGNGRADK 125
Query 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRAPTIARMAEATSRAEARAAQQ 176
Q+TAM+T+IL L P PADAADALALA+CHCWR A M E + E ++A+Q
Sbjct 126 KQMTAMITRILGLSEPPKPADAADALALAVCHCWR----ALMLEIQRKTERQSAEQ 177
>gi|68536133|ref|YP_250838.1| Holliday junction resolvase [Corynebacterium jeikeium K411]
gi|68263732|emb|CAI37220.1| crossover junction endodeoxyribonuclease [Corynebacterium jeikeium
K411]
Length=187
Score = 198 bits (503), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 100/157 (64%), Positives = 125/157 (80%), Gaps = 0/157 (0%)
Query 1 VRVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH 60
+RVMG+DPGLTRCGLS++++G+GR + + V VVRTPSD + QRL + DAVE W D +
Sbjct 22 LRVMGIDPGLTRCGLSVVQAGKGRAVYPVAVGVVRTPSDMPVEQRLNKLFDAVEQWFDDY 81
Query 61 HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK 120
P VVA+ERVF + NV+TVM TA A GV+ LAAA+RGVDVH +TPSEVK +++GNG ADK
Sbjct 82 QPHVVALERVFERSNVSTVMNTAHASGVLMLAAARRGVDVHMYTPSEVKKSISGNGRADK 141
Query 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRAP 157
AQ+T M+T+IL L P P DAADALALA+CHCWRAP
Sbjct 142 AQMTRMITRILGLSEAPKPPDAADALALAVCHCWRAP 178
>gi|296393858|ref|YP_003658742.1| crossover junction endodeoxyribonuclease RuvC [Segniliparus rotundus
DSM 44985]
gi|296181005|gb|ADG97911.1| crossover junction endodeoxyribonuclease RuvC [Segniliparus rotundus
DSM 44985]
Length=189
Score = 198 bits (503), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 118/183 (65%), Positives = 138/183 (76%), Gaps = 11/183 (6%)
Query 1 VRVMGVDPGLTRCGLSLIESGRGRQLTALDVDVVRTPSDAALAQRLLAISDAVEHWLDTH 60
+RVMGVDPGLTRCGL+L+E+G GR +TALDVDV T A+L RL I+ VEHWLD+H
Sbjct 1 MRVMGVDPGLTRCGLALVETGSGRSVTALDVDVCHTSPQASLQDRLSKIAAEVEHWLDSH 60
Query 61 HPEVVAIERVFSQLNVTTVMGTAQAGGVIALAAAKRGVDVHFHTPSEVKAAVTGNGSADK 120
P+VVA+E+VF+Q NV TVMG AQ GV+AL +AKR + + HTPSEVKAAVTGNG ADK
Sbjct 61 RPDVVAVEQVFAQHNVRTVMGVAQVSGVVALLSAKRSIPMRTHTPSEVKAAVTGNGRADK 120
Query 121 AQVTAMVTKILALQAKPTPADAADALALAICHCWRAPTIA-----------RMAEATSRA 169
QVTAMVT+IL L+AKP PADAADALALAICHCWRAP R+AEA + A
Sbjct 121 DQVTAMVTRILGLKAKPAPADAADALALAICHCWRAPLQGLEAGRDSARPNRLAEAVALA 180
Query 170 EAR 172
AR
Sbjct 181 GAR 183
Lambda K H
0.319 0.128 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 183812957610
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40