BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2595 Length=81 Score E Sequences producing significant alignments: (Bits) Value gi|15609732|ref|NP_217111.1| hypothetical protein Rv2595 [Mycoba... 150 7e-35 gi|306804355|ref|ZP_07441023.1| antitoxin [Mycobacterium tubercu... 147 5e-34 gi|297567634|ref|YP_003686605.1| hypothetical protein Mesil_3283... 50.4 8e-05 gi|288922494|ref|ZP_06416678.1| transcriptional regulator, AbrB ... 50.1 1e-04 gi|86741977|ref|YP_482377.1| AbrB family transcriptional regulat... 48.5 3e-04 gi|111219703|ref|YP_710497.1| hypothetical protein FRAAL0207 [Fr... 47.0 0.001 gi|86741256|ref|YP_481656.1| AbrB family transcriptional regulat... 46.6 0.001 gi|15840002|ref|NP_335039.1| hypothetical protein MT0629 [Mycoba... 46.6 0.001 gi|37521278|ref|NP_924655.1| hypothetical protein gsl1709 [Gloeo... 46.6 0.001 gi|15607739|ref|NP_215113.1| hypothetical protein Rv0599c [Mycob... 46.2 0.001 gi|126433454|ref|YP_001069145.1| AbrB family transcriptional reg... 42.7 0.016 gi|119866894|ref|YP_936846.1| AbrB family transcriptional regula... 42.7 0.020 gi|57640344|ref|YP_182822.1| SpoVT/AbrB family transcriptional r... 42.4 0.025 gi|229821219|ref|YP_002882745.1| AbrB family transcriptional reg... 42.4 0.025 gi|55377869|ref|YP_135719.1| transcription regulator [Haloarcula... 42.0 0.029 gi|284045185|ref|YP_003395525.1| AbrB family transcriptional reg... 42.0 0.034 gi|94263444|ref|ZP_01287257.1| Transcriptional regulator AbrB [d... 41.2 0.056 gi|332796080|ref|YP_004457580.1| VapB-type antitoxin [Acidianus ... 41.2 0.057 gi|315446132|ref|YP_004079011.1| AbrB family transcriptional reg... 40.8 0.064 gi|227875624|ref|ZP_03993763.1| AbrB family transcriptional regu... 40.8 0.067 gi|170735475|ref|YP_001774589.1| AbrB family transcriptional reg... 40.4 0.079 gi|67925492|ref|ZP_00518830.1| Transcriptional regulator AbrB [C... 39.7 0.14 gi|306818932|ref|ZP_07452653.1| AbrB family transcriptional regu... 39.7 0.15 gi|240169441|ref|ZP_04748100.1| hypothetical protein MkanA1_0901... 39.3 0.17 gi|328952487|ref|YP_004369821.1| AbrB family transcriptional reg... 38.9 0.25 gi|220935610|ref|YP_002514509.1| hypothetical protein Tgr7_2444 ... 38.9 0.26 gi|345303129|ref|YP_004825031.1| AbrB family transcriptional reg... 38.9 0.27 gi|134300264|ref|YP_001113760.1| AbrB family transcriptional reg... 38.9 0.28 gi|291556605|emb|CBL33722.1| ABC-type antimicrobial peptide tran... 38.5 0.38 gi|145225772|ref|YP_001136450.1| AbrB family transcriptional reg... 38.1 0.38 gi|291531862|emb|CBK97447.1| ABC-type antimicrobial peptide tran... 38.1 0.39 gi|167749285|ref|ZP_02421412.1| hypothetical protein EUBSIR_0023... 38.1 0.39 gi|39936669|ref|NP_948945.1| AbrB/SpoVT family transcriptional r... 38.1 0.41 gi|316933112|ref|YP_004108094.1| AbrB family transcriptional reg... 37.7 0.51 gi|289937479|ref|YP_003482081.1| transcriptional regulator, AbrB... 37.7 0.57 gi|336119320|ref|YP_004574097.1| hypothetical protein MLP_36800 ... 37.7 0.59 gi|339449076|ref|ZP_08652632.1| AbrB family transcriptional regu... 37.4 0.74 gi|15920210|ref|NP_375879.1| hypothetical protein STS011 [Sulfol... 37.0 0.98 gi|83589065|ref|YP_429074.1| AbrB family transcriptional regulat... 37.0 1.0 gi|325289649|ref|YP_004265830.1| AbrB family transcriptional reg... 36.6 1.3 gi|320449397|ref|YP_004201493.1| AbrB family transcriptional reg... 36.6 1.3 gi|83590899|ref|YP_430908.1| AbrB family transcriptional regulat... 36.6 1.4 gi|288932737|ref|YP_003436797.1| AbrB family transcriptional reg... 36.2 1.5 gi|297617370|ref|YP_003702529.1| AbrB family transcriptional reg... 36.2 1.5 gi|171321391|ref|ZP_02910344.1| transcriptional regulator, AbrB ... 36.2 1.6 gi|115360421|ref|YP_777558.1| AbrB family transcriptional regula... 36.2 1.6 gi|229578672|ref|YP_002837070.1| AbrB family transcriptional reg... 36.2 1.7 gi|320161279|ref|YP_004174503.1| putative ABC transporter ATP-bi... 36.2 1.8 gi|289208707|ref|YP_003460773.1| AbrB family transcriptional reg... 36.2 1.8 gi|121534973|ref|ZP_01666791.1| transcriptional regulator, AbrB ... 36.2 1.8 >gi|15609732|ref|NP_217111.1| hypothetical protein Rv2595 [Mycobacterium tuberculosis H37Rv] gi|31793779|ref|NP_856272.1| hypothetical protein Mb2626 [Mycobacterium bovis AF2122/97] gi|121638480|ref|YP_978704.1| hypothetical protein BCG_2618 [Mycobacterium bovis BCG str. Pasteur 1173P2] 72 more sequence titles Length=81 Score = 150 bits (379), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 81/81 (100%), Positives = 81/81 (100%), Gaps = 0/81 (0%) Query 1 MRTTIDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIEIEPAPTGVELVREGSVLVARP 60 MRTTIDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIEIEPAPTGVELVREGSVLVARP Sbjct 1 MRTTIDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIEIEPAPTGVELVREGSVLVARP 60 Query 61 ERPLPPLTDEIVRETLDRTRR 81 ERPLPPLTDEIVRETLDRTRR Sbjct 61 ERPLPPLTDEIVRETLDRTRR 81 >gi|306804355|ref|ZP_07441023.1| antitoxin [Mycobacterium tuberculosis SUMu008] gi|308349032|gb|EFP37883.1| antitoxin [Mycobacterium tuberculosis SUMu008] Length=81 Score = 147 bits (371), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 80/81 (99%), Positives = 80/81 (99%), Gaps = 0/81 (0%) Query 1 MRTTIDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIEIEPAPTGVELVREGSVLVARP 60 MRTTIDVAGRLVIPKRIRERLGLRGNDQVEITERDGRI IEPAPTGVELVREGSVLVARP Sbjct 1 MRTTIDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIGIEPAPTGVELVREGSVLVARP 60 Query 61 ERPLPPLTDEIVRETLDRTRR 81 ERPLPPLTDEIVRETLDRTRR Sbjct 61 ERPLPPLTDEIVRETLDRTRR 81 >gi|297567634|ref|YP_003686605.1| hypothetical protein Mesil_3283 [Meiothermus silvanus DSM 9946] gi|296852083|gb|ADH65097.1| hypothetical protein Mesil_3283 [Meiothermus silvanus DSM 9946] Length=83 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 27/58 (47%), Positives = 40/58 (69%), Gaps = 0/58 (0%) Query 1 MRTTIDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIEIEPAPTGVELVREGSVLVA 58 M+ T+D GR++IPK++RERLGLR +D +E+ DG++ + P T L R+G VLV Sbjct 1 MQITLDKFGRILIPKKLRERLGLRPDDVLEVQLEDGKLTLLPQRTPPPLRRKGRVLVV 58 >gi|288922494|ref|ZP_06416678.1| transcriptional regulator, AbrB family [Frankia sp. EUN1f] gi|288346158|gb|EFC80503.1| transcriptional regulator, AbrB family [Frankia sp. EUN1f] Length=78 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/81 (36%), Positives = 46/81 (57%), Gaps = 3/81 (3%) Query 1 MRTTIDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIEIEPAPTGVELVREGSVLVARP 60 M +D AGR+V+PK IR+ LGL +V+I+ +++ PA LV E VLV+ Sbjct 1 MEAVVDQAGRIVLPKSIRDALGLLPGTKVDISPYGAGVQVVPAGRTARLVEENGVLVSAG 60 Query 61 ERPLPPLTDEIVRETLDRTRR 81 + P+ D+++ +D TRR Sbjct 61 DT---PVDDDVLFGLIDATRR 78 >gi|86741977|ref|YP_482377.1| AbrB family transcriptional regulator [Frankia sp. CcI3] gi|86568839|gb|ABD12648.1| transcriptional regulator, AbrB family [Frankia sp. CcI3] Length=87 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/81 (38%), Positives = 45/81 (56%), Gaps = 3/81 (3%) Query 1 MRTTIDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIEIEPAPTGVELVREGSVLVARP 60 M +D AGR+V+PK +RE LGL +V+I+ ++I PA LV E VLV+ Sbjct 10 MEAVVDQAGRIVLPKLLREALGLFPGTKVDISPYGAGVQIVPAGRTARLVEEDGVLVSAG 69 Query 61 ERPLPPLTDEIVRETLDRTRR 81 + P+ D+I+ +D RR Sbjct 70 DT---PVDDDILFGLIDAGRR 87 >gi|111219703|ref|YP_710497.1| hypothetical protein FRAAL0207 [Frankia alni ACN14a] gi|111147235|emb|CAJ58885.1| conserved hypothetical protein [Frankia alni ACN14a] Length=78 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/81 (34%), Positives = 45/81 (56%), Gaps = 3/81 (3%) Query 1 MRTTIDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIEIEPAPTGVELVREGSVLVARP 60 M +D AGR+V+PK IR+ LGL +V+I+ +++ PA LV E VLV+ Sbjct 1 MEAVVDQAGRIVLPKFIRDALGLLPGTKVDISPYGAGVQVVPAGRTARLVEENGVLVSAG 60 Query 61 ERPLPPLTDEIVRETLDRTRR 81 + P+ D+++ +D R+ Sbjct 61 DT---PVDDDVLFGLIDAGRK 78 >gi|86741256|ref|YP_481656.1| AbrB family transcriptional regulator [Frankia sp. CcI3] gi|86568118|gb|ABD11927.1| transcriptional regulator, AbrB family [Frankia sp. CcI3] Length=120 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/81 (38%), Positives = 44/81 (55%), Gaps = 3/81 (3%) Query 1 MRTTIDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIEIEPAPTGVELVREGSVLVARP 60 M +D AGR+V+PK IR+ LGL +V+I+ +++ PA LV E VLVA Sbjct 43 MEAVVDQAGRIVLPKFIRDALGLLPGTKVDISPYGAGVQVVPAGRTARLVEENGVLVAAG 102 Query 61 ERPLPPLTDEIVRETLDRTRR 81 + + DEI+ +D RR Sbjct 103 DT---VVDDEILFGLIDAGRR 120 >gi|15840002|ref|NP_335039.1| hypothetical protein MT0629 [Mycobacterium tuberculosis CDC1551] gi|298524086|ref|ZP_07011495.1| transcriptional regulator [Mycobacterium tuberculosis 94_M4241A] gi|13880145|gb|AAK44853.1| hypothetical protein MT0629 [Mycobacterium tuberculosis CDC1551] gi|298493880|gb|EFI29174.1| transcriptional regulator [Mycobacterium tuberculosis 94_M4241A] Length=87 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/81 (36%), Positives = 42/81 (52%), Gaps = 3/81 (3%) Query 1 MRTTIDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIEIEPAPTGVELVREGSVLVARP 60 M+ +D AGR+V+PK +RE LGL+ VEI+ + + P L E VLVA Sbjct 10 MKAVVDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTARLEEENGVLVATG 69 Query 61 ERPLPPLTDEIVRETLDRTRR 81 E + DE+V +D R+ Sbjct 70 ET---TIDDEVVFGLIDSGRK 87 >gi|37521278|ref|NP_924655.1| hypothetical protein gsl1709 [Gloeobacter violaceus PCC 7421] gi|35212275|dbj|BAC89650.1| gsl1709 [Gloeobacter violaceus PCC 7421] Length=85 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/58 (40%), Positives = 38/58 (66%), Gaps = 0/58 (0%) Query 4 TIDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIEIEPAPTGVELVREGSVLVARPE 61 TID GR++IPK++R++LGL +D++++ RDG I + P ++ +G VLV E Sbjct 5 TIDKFGRILIPKKVRDQLGLSASDKLDLEIRDGVILLAPIQQEQKVYYKGGVLVVDSE 62 >gi|15607739|ref|NP_215113.1| hypothetical protein Rv0599c [Mycobacterium tuberculosis H37Rv] gi|31791781|ref|NP_854274.1| hypothetical protein Mb0615c [Mycobacterium bovis AF2122/97] gi|121636517|ref|YP_976740.1| hypothetical protein BCG_0645c [Mycobacterium bovis BCG str. Pasteur 1173P2] 73 more sequence titles Length=78 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/81 (36%), Positives = 42/81 (52%), Gaps = 3/81 (3%) Query 1 MRTTIDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIEIEPAPTGVELVREGSVLVARP 60 M+ +D AGR+V+PK +RE LGL+ VEI+ + + P L E VLVA Sbjct 1 MKAVVDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTARLEEENGVLVATG 60 Query 61 ERPLPPLTDEIVRETLDRTRR 81 E + DE+V +D R+ Sbjct 61 ET---TIDDEVVFGLIDSGRK 78 >gi|126433454|ref|YP_001069145.1| AbrB family transcriptional regulator [Mycobacterium sp. JLS] gi|126233254|gb|ABN96654.1| transcriptional regulator, AbrB family [Mycobacterium sp. JLS] Length=79 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 29/82 (36%), Positives = 44/82 (54%), Gaps = 4/82 (4%) Query 1 MRTTIDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIEIEPAPTGVELVR-EGSVLVAR 59 M ID GR+V+PK++R+ LGL +V+I+ G + + P L R E LVAR Sbjct 1 MEAVIDSGGRIVLPKQLRDALGLTPGSKVDISAYGGGLHVVPGGRTARLERDEDGRLVAR 60 Query 60 PERPLPPLTDEIVRETLDRTRR 81 + +TDE++ +D RR Sbjct 61 AD---TVVTDEMMFALIDSGRR 79 >gi|119866894|ref|YP_936846.1| AbrB family transcriptional regulator [Mycobacterium sp. KMS] gi|119692983|gb|ABL90056.1| transcriptional regulator, AbrB family [Mycobacterium sp. KMS] Length=110 Score = 42.7 bits (99), Expect = 0.020, Method: Compositional matrix adjust. Identities = 29/82 (36%), Positives = 44/82 (54%), Gaps = 4/82 (4%) Query 1 MRTTIDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIEIEPAPTGVELVR-EGSVLVAR 59 M ID GR+V+PK++R+ LGL +V+I+ G + + P L R E LVAR Sbjct 32 MEAVIDSGGRIVLPKQLRDALGLTPGSKVDISAYGGGLHVIPGGRTARLERDEDGRLVAR 91 Query 60 PERPLPPLTDEIVRETLDRTRR 81 + +TDE++ +D RR Sbjct 92 ADT---VVTDEMMFALIDSGRR 110 >gi|57640344|ref|YP_182822.1| SpoVT/AbrB family transcriptional regulator [Thermococcus kodakarensis KOD1] gi|57158668|dbj|BAD84598.1| predicted transcription regulator, SpoVT/AbrB family [Thermococcus kodakarensis KOD1] Length=145 Score = 42.4 bits (98), Expect = 0.025, Method: Compositional matrix adjust. Identities = 24/59 (41%), Positives = 36/59 (62%), Gaps = 3/59 (5%) Query 1 MRTTIDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIEIEPAPTGVELVREGSVLVAR 59 +D GR+ IPK IRE L + ND VE+ R +IEI P + ++++++G LVAR Sbjct 11 FHARLDKEGRIAIPKTIREALNIEKNDYVEVIVR--KIEINPEKSIIKVLKQGY-LVAR 66 >gi|229821219|ref|YP_002882745.1| AbrB family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229567132|gb|ACQ80983.1| transcriptional regulator, AbrB family [Beutenbergia cavernae DSM 12333] Length=73 Score = 42.4 bits (98), Expect = 0.025, Method: Compositional matrix adjust. Identities = 18/38 (48%), Positives = 28/38 (74%), Gaps = 0/38 (0%) Query 1 MRTTIDVAGRLVIPKRIRERLGLRGNDQVEITERDGRI 38 M+TT+ G++ IPK +RERLGLR +E+ E+DG++ Sbjct 1 MKTTVSEKGQITIPKALRERLGLRAGSVLEVEEKDGQL 38 >gi|55377869|ref|YP_135719.1| transcription regulator [Haloarcula marismortui ATCC 43049] gi|55230594|gb|AAV46013.1| transcription regulator [Haloarcula marismortui ATCC 43049] Length=109 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 26/83 (32%), Positives = 43/83 (52%), Gaps = 6/83 (7%) Query 5 IDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIEIEPAPTGVELVREGSVLVARPE--- 61 +D GR+V+P+ +RE+LG+ +VEI E DG+ +EP +++ LVA + Sbjct 19 VDSKGRIVLPQEVREKLGISPGTEVEIHEEDGKAVVEPEDNPEQIIERMEKLVAATDSER 78 Query 62 ---RPLPPLTDEIVRETLDRTRR 81 P+ D I ++ D RR Sbjct 79 GKTSPIDEGVDPIAKKHRDAVRR 101 >gi|284045185|ref|YP_003395525.1| AbrB family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949406|gb|ADB52150.1| transcriptional regulator, AbrB family [Conexibacter woesei DSM 14684] Length=84 Score = 42.0 bits (97), Expect = 0.034, Method: Compositional matrix adjust. Identities = 21/52 (41%), Positives = 31/52 (60%), Gaps = 0/52 (0%) Query 1 MRTTIDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIEIEPAPTGVELVRE 52 M + G++V+PK +RERLG+R D+V E DG I + A + +LV E Sbjct 1 MTYKVGAKGQVVLPKAMRERLGIRPGDEVLFDEGDGEITVRKAKSKAQLVDE 52 >gi|94263444|ref|ZP_01287257.1| Transcriptional regulator AbrB [delta proteobacterium MLMS-1] gi|94269040|ref|ZP_01291354.1| Transcriptional regulator AbrB [delta proteobacterium MLMS-1] gi|93451367|gb|EAT02229.1| Transcriptional regulator AbrB [delta proteobacterium MLMS-1] gi|93456174|gb|EAT06313.1| Transcriptional regulator AbrB [delta proteobacterium MLMS-1] Length=78 Score = 41.2 bits (95), Expect = 0.056, Method: Compositional matrix adjust. Identities = 18/42 (43%), Positives = 29/42 (70%), Gaps = 0/42 (0%) Query 3 TTIDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIEIEPAP 44 TT V G++ IP R+R++L +R ++ + ERDG+I +EP P Sbjct 4 TTTTVKGQVTIPSRLRKKLHIRQGTRIAVHERDGKIIMEPLP 45 >gi|332796080|ref|YP_004457580.1| VapB-type antitoxin [Acidianus hospitalis W1] gi|332693815|gb|AEE93282.1| VapB-type antitoxin [Acidianus hospitalis W1] Length=77 Score = 41.2 bits (95), Expect = 0.057, Method: Compositional matrix adjust. Identities = 22/36 (62%), Positives = 27/36 (75%), Gaps = 1/36 (2%) Query 4 TIDVAGRLVIPKRIRERLGLRGNDQVEIT-ERDGRI 38 TID GR+VIPK IRE+L L+ +VEI E+DGRI Sbjct 6 TIDEKGRIVIPKEIREKLNLKEGSKVEINLEKDGRI 41 >gi|315446132|ref|YP_004079011.1| AbrB family transcriptional regulator [Mycobacterium sp. Spyr1] gi|315264435|gb|ADU01177.1| transcriptional regulator, AbrB family [Mycobacterium sp. Spyr1] Length=79 Score = 40.8 bits (94), Expect = 0.064, Method: Compositional matrix adjust. Identities = 28/82 (35%), Positives = 45/82 (55%), Gaps = 4/82 (4%) Query 1 MRTTIDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIEIEPAPTGVELVREGSV-LVAR 59 M ID GR+V+PK++R+ LGL +V+I+ G ++I P L R+ LVA+ Sbjct 1 MEAVIDSGGRVVLPKQLRDALGLTPGTKVDISAYGGGLQIVPGGRTARLERDDDGRLVAQ 60 Query 60 PERPLPPLTDEIVRETLDRTRR 81 + +TDE++ +D RR Sbjct 61 AD---TVVTDEMMFAIIDSGRR 79 >gi|227875624|ref|ZP_03993763.1| AbrB family transcriptional regulator [Mobiluncus mulieris ATCC 35243] gi|269977132|ref|ZP_06184105.1| toxin-antitoxin system, antitoxin component, AbrB family [Mobiluncus mulieris 28-1] gi|307700801|ref|ZP_07637826.1| toxin-antitoxin system, antitoxin component, AbrB family [Mobiluncus mulieris FB024-16] gi|227843809|gb|EEJ53979.1| AbrB family transcriptional regulator [Mobiluncus mulieris ATCC 35243] gi|269934435|gb|EEZ90996.1| toxin-antitoxin system, antitoxin component, AbrB family [Mobiluncus mulieris 28-1] gi|307613796|gb|EFN93040.1| toxin-antitoxin system, antitoxin component, AbrB family [Mobiluncus mulieris FB024-16] Length=78 Score = 40.8 bits (94), Expect = 0.067, Method: Compositional matrix adjust. Identities = 27/82 (33%), Positives = 40/82 (49%), Gaps = 5/82 (6%) Query 1 MRTTIDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIEIEPAPTGVEL-VREGSVLVAR 59 M T+D AGRLVIPK R++LGL V+I+ ++I P L V G + A Sbjct 1 MEATLDKAGRLVIPKVFRDQLGLNSGTPVDISLYGNGLQITPGGRKASLKVVAGKPVAAS 60 Query 60 PERPLPPLTDEIVRETLDRTRR 81 R D+++ +D R+ Sbjct 61 EAR----FDDDLMYTLMDSVRK 78 >gi|170735475|ref|YP_001774589.1| AbrB family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169821513|gb|ACA96094.1| transcriptional regulator, AbrB family [Burkholderia cenocepacia MC0-3] Length=81 Score = 40.4 bits (93), Expect = 0.079, Method: Compositional matrix adjust. Identities = 23/64 (36%), Positives = 36/64 (57%), Gaps = 5/64 (7%) Query 3 TTIDVAGRLVIPKRIRERLGLRGNDQVEIT--ERDGRIEIEPAPTGVELVREGSVLVARP 60 TI GR+ IP +R +LGL D++E + E GR EI PA + ++ +V +P Sbjct 4 ATITSKGRVTIPVDVRNQLGLESGDRIEFSFNEATGRYEIYPATCSLASLKG---VVKKP 60 Query 61 ERPL 64 E+P+ Sbjct 61 EKPV 64 >gi|67925492|ref|ZP_00518830.1| Transcriptional regulator AbrB [Crocosphaera watsonii WH 8501] gi|67852661|gb|EAM48082.1| Transcriptional regulator AbrB [Crocosphaera watsonii WH 8501] Length=71 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 17/60 (29%), Positives = 38/60 (64%), Gaps = 0/60 (0%) Query 2 RTTIDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIEIEPAPTGVELVREGSVLVARPE 61 + T+D GR+ IP++IR++LG+ + ++ + +G++ ++P + +E E +LV + E Sbjct 3 QLTLDQFGRVEIPEKIRQKLGINNDTKLSLKVENGQLILKPLQSELETYYEDGILVFKAE 62 >gi|306818932|ref|ZP_07452653.1| AbrB family transcriptional regulator [Mobiluncus mulieris ATCC 35239] gi|304648334|gb|EFM45638.1| AbrB family transcriptional regulator [Mobiluncus mulieris ATCC 35239] Length=78 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 26/81 (33%), Positives = 39/81 (49%), Gaps = 3/81 (3%) Query 1 MRTTIDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIEIEPAPTGVELVREGSVLVARP 60 M T+D AGRLVIPK R++LGL V+I+ ++I P L G VA Sbjct 1 MEATLDKAGRLVIPKVFRDQLGLNSGTPVDISLYGNGLQITPGGRKASLKIVGGKPVATS 60 Query 61 ERPLPPLTDEIVRETLDRTRR 81 + D+++ +D R+ Sbjct 61 K---ARFDDDLMYTLMDSVRK 78 >gi|240169441|ref|ZP_04748100.1| hypothetical protein MkanA1_09019 [Mycobacterium kansasii ATCC 12478] Length=77 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 23/42 (55%), Positives = 28/42 (67%), Gaps = 1/42 (2%) Query 1 MRTTIDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIEIEP 42 MRTTID AGRLVIPK +RE+ G+ +VEI+ I IE Sbjct 1 MRTTIDKAGRLVIPKSLREQSGITAG-EVEISVEGAAIRIES 41 >gi|328952487|ref|YP_004369821.1| AbrB family transcriptional regulator [Desulfobacca acetoxidans DSM 11109] gi|328452811|gb|AEB08640.1| transcriptional regulator, AbrB family [Desulfobacca acetoxidans DSM 11109] Length=81 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 27/80 (34%), Positives = 43/80 (54%), Gaps = 5/80 (6%) Query 2 RTTIDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIEIEPAPTGVELVREGSVLVARPE 61 + I G++ IP +R+R GL+ D++ + E DG I + P P L G + A E Sbjct 3 KVVISEKGQICIPSSLRQRFGLQKGDRLAVEESDGAIILRPLPRHPLLALRGKLKGAGDE 62 Query 62 RPLPPLTDEIVRE-TLDRTR 80 + LTD +++E T+DR R Sbjct 63 K----LTDLLLQERTVDRER 78 >gi|220935610|ref|YP_002514509.1| hypothetical protein Tgr7_2444 [Thioalkalivibrio sulfidophilus HL-EbGr7] gi|219996920|gb|ACL73522.1| conserved hypothetical protein [Thioalkalivibrio sulfidophilus HL-EbGr7] Length=79 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 24/63 (39%), Positives = 38/63 (61%), Gaps = 4/63 (6%) Query 1 MRTTIDVAGRLVIPKRIRERLGLRGNDQVE-ITERDGRIEIEPAPTGVELVREGSVLVAR 59 M +T+ G++ +PK +RERL LR D+VE + DGR+E+ P V ++ +V R Sbjct 1 MLSTLTSKGQVTLPKALRERLHLRTGDKVEFLIHEDGRVELLPVTAPVTRLKG---MVPR 57 Query 60 PER 62 P+R Sbjct 58 PKR 60 >gi|345303129|ref|YP_004825031.1| AbrB family transcriptional regulator [Rhodothermus marinus SG0.5JP17-172] gi|345112362|gb|AEN73194.1| transcriptional regulator, AbrB family [Rhodothermus marinus SG0.5JP17-172] Length=88 Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust. Identities = 17/44 (39%), Positives = 31/44 (71%), Gaps = 2/44 (4%) Query 1 MRTTIDVA--GRLVIPKRIRERLGLRGNDQVEITERDGRIEIEP 42 M+TT+ + G++ +P+++RE LGL D++E++ DG+I I P Sbjct 1 MKTTVRLTRKGQITVPRQVRETLGLHAGDEIELSVEDGKIVIRP 44 >gi|134300264|ref|YP_001113760.1| AbrB family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134052964|gb|ABO50935.1| transcriptional regulator, AbrB family [Desulfotomaculum reducens MI-1] Length=81 Score = 38.9 bits (89), Expect = 0.28, Method: Compositional matrix adjust. Identities = 17/40 (43%), Positives = 26/40 (65%), Gaps = 0/40 (0%) Query 3 TTIDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIEIEP 42 + G++VIPK++RE+ GL+ ++ITE DG I I P Sbjct 4 NKMSYKGQVVIPKQLREKYGLKPEQNIKITEIDGHIAIIP 43 >gi|291556605|emb|CBL33722.1| ABC-type antimicrobial peptide transport system, ATPase component [Eubacterium siraeum V10Sc8a] Length=321 Score = 38.5 bits (88), Expect = 0.38, Method: Compositional matrix adjust. Identities = 18/44 (41%), Positives = 26/44 (60%), Gaps = 0/44 (0%) Query 5 IDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIEIEPAPTGVE 48 +D AGRL IPK E LG+RG D+V + DG+I + + + Sbjct 277 LDRAGRLQIPKEYLEALGIRGGDKVRVELEDGKISVYNSDYNMH 320 >gi|145225772|ref|YP_001136450.1| AbrB family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|145218258|gb|ABP47662.1| transcriptional regulator, AbrB family [Mycobacterium gilvum PYR-GCK] Length=79 Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust. Identities = 25/82 (31%), Positives = 44/82 (54%), Gaps = 4/82 (4%) Query 1 MRTTIDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIEIEPAPTGVELVR-EGSVLVAR 59 M +D +GR+V+PK++R+ LGL +V+I+ G +++ P + R E VA Sbjct 1 MEAVVDSSGRIVLPKQLRDALGLVPGSKVDISVYGGGLQVIPGDRTARIERAEDGRFVAN 60 Query 60 PERPLPPLTDEIVRETLDRTRR 81 + +TDE++ +D RR Sbjct 61 AD---TVVTDEMMFAAIDSGRR 79 >gi|291531862|emb|CBK97447.1| ABC-type antimicrobial peptide transport system, ATPase component [Eubacterium siraeum 70/3] Length=317 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 18/44 (41%), Positives = 26/44 (60%), Gaps = 0/44 (0%) Query 5 IDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIEIEPAPTGVE 48 +D AGRL IPK E LG+RG D+V + DG+I + + + Sbjct 273 LDRAGRLQIPKEYLEALGIRGGDKVRVELEDGKISVYNSDYNMH 316 >gi|167749285|ref|ZP_02421412.1| hypothetical protein EUBSIR_00236 [Eubacterium siraeum DSM 15702] gi|167657730|gb|EDS01860.1| hypothetical protein EUBSIR_00236 [Eubacterium siraeum DSM 15702] Length=321 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 18/44 (41%), Positives = 26/44 (60%), Gaps = 0/44 (0%) Query 5 IDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIEIEPAPTGVE 48 +D AGRL IPK E LG+RG D+V + DG+I + + + Sbjct 277 LDRAGRLQIPKEYLEALGIRGGDKVRVELEDGKISVYNSDYNMH 320 >gi|39936669|ref|NP_948945.1| AbrB/SpoVT family transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|39650525|emb|CAE29048.1| transcriptional regulator AbrB/SpoVT family [Rhodopseudomonas palustris CGA009] Length=84 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 22/75 (30%), Positives = 42/75 (56%), Gaps = 3/75 (4%) Query 1 MRTTIDVAGRLVIPKRIRERLGLRGNDQVEI-TERDGRIEIEPAPTGVELVREGSVLVAR 59 M TTI G++ +PK++R+ G++ D+VE+ + G I I + + + +++ + R Sbjct 1 MATTITSKGQVTLPKKVRDAAGIKPGDKVEVRSTASGGIYIGKSGSEADYLKKLQAIAKR 60 Query 60 PERPLPPLTDEIVRE 74 P+ TDEI+ E Sbjct 61 --YPIHGGTDEIMHE 73 >gi|316933112|ref|YP_004108094.1| AbrB family transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315600826|gb|ADU43361.1| transcriptional regulator, AbrB family [Rhodopseudomonas palustris DX-1] Length=84 Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 3/75 (4%) Query 1 MRTTIDVAGRLVIPKRIRERLGLRGNDQVEI-TERDGRIEIEPAPTGVELVREGSVLVAR 59 M TT+ V G++ +PK++R+ G++ D+VEI G I I + E +++ + R Sbjct 1 MGTTVTVKGQVTLPKKVRDAAGIKPGDKVEIRNTASGGIYIGKKESEGEYLKKLQAIAKR 60 Query 60 PERPLPPLTDEIVRE 74 P+ TD+I+RE Sbjct 61 --HPIRGSTDDIMRE 73 >gi|289937479|ref|YP_003482081.1| transcriptional regulator, AbrB family [Natrialba magadii ATCC 43099] gi|289533170|gb|ADD07519.1| transcriptional regulator, AbrB family [Natrialba magadii ATCC 43099] Length=89 Score = 37.7 bits (86), Expect = 0.57, Method: Compositional matrix adjust. Identities = 16/42 (39%), Positives = 27/42 (65%), Gaps = 0/42 (0%) Query 4 TIDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIEIEPAPT 45 T+D GR+ +PK +R+RLG+ ND++ T +E+ P P+ Sbjct 17 TVDDRGRVTLPKEVRDRLGIESNDEIPATLVGSVLEVNPKPS 58 >gi|336119320|ref|YP_004574097.1| hypothetical protein MLP_36800 [Microlunatus phosphovorus NM-1] gi|334687109|dbj|BAK36694.1| hypothetical protein MLP_36800 [Microlunatus phosphovorus NM-1] Length=79 Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust. Identities = 27/82 (33%), Positives = 43/82 (53%), Gaps = 4/82 (4%) Query 1 MRTTIDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIEIEPAPTGVELVRE-GSVLVAR 59 M ID GR+V+PK +R+ LGL +V+I+ +++ P L RE LVAR Sbjct 1 MEAIIDSGGRIVLPKHLRDALGLTPGTKVDISPYGTGVQVTPGGRTARLEREPDGRLVAR 60 Query 60 PERPLPPLTDEIVRETLDRTRR 81 + +TD+++ +D RR Sbjct 61 GD---VEVTDDLMYALIDSGRR 79 >gi|339449076|ref|ZP_08652632.1| AbrB family transcriptional regulator [Lactobacillus fructivorans KCTC 3543] Length=88 Score = 37.4 bits (85), Expect = 0.74, Method: Compositional matrix adjust. Identities = 18/49 (37%), Positives = 29/49 (60%), Gaps = 1/49 (2%) Query 4 TIDVAGRLVIPKRIRERLGLRGNDQVEIT-ERDGRIEIEPAPTGVELVR 51 T+ ++ IPK +R+ L L+ NDQVE T ++DG I I P + + + Sbjct 11 TMTSKNQITIPKTVRDILDLKQNDQVEFTIQKDGSITIAPKESFEDFWK 59 >gi|15920210|ref|NP_375879.1| hypothetical protein STS011 [Sulfolobus tokodaii str. 7] gi|15620992|dbj|BAB64988.1| putative antitoxin [Sulfolobus tokodaii str. 7] Length=84 Score = 37.0 bits (84), Expect = 0.98, Method: Compositional matrix adjust. Identities = 19/40 (48%), Positives = 30/40 (75%), Gaps = 1/40 (2%) Query 3 TTIDVAGRLVIPKRIRERLGLRGNDQVEI-TERDGRIEIE 41 T+D GR++IPK+IRE+L L+ +VE+ E+DG+I I+ Sbjct 12 VTVDERGRVIIPKQIREKLNLKEGSKVEVDLEKDGKIVIK 51 >gi|83589065|ref|YP_429074.1| AbrB family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83571979|gb|ABC18531.1| transcriptional regulator, AbrB family [Moorella thermoacetica ATCC 39073] Length=82 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 19/64 (30%), Positives = 32/64 (50%), Gaps = 0/64 (0%) Query 1 MRTTIDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIEIEPAPTGVELVREGSVLVARP 60 + T+ G++VIP IR+ GL+ DQ+ + + +G I + P P L G + P Sbjct 2 YKITVSQKGQIVIPLEIRKNYGLKKGDQLAVEDNNGIITLRPLPRHPFLALRGKYKSSSP 61 Query 61 ERPL 64 + L Sbjct 62 KDKL 65 >gi|325289649|ref|YP_004265830.1| AbrB family transcriptional regulator [Syntrophobotulus glycolicus DSM 8271] gi|324965050|gb|ADY55829.1| transcriptional regulator, AbrB family [Syntrophobotulus glycolicus DSM 8271] Length=87 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 17/42 (41%), Positives = 26/42 (62%), Gaps = 0/42 (0%) Query 1 MRTTIDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIEIEP 42 M + + ++ IPK + ERLGL D++EI E+DG I + P Sbjct 2 MLSELRAKSQITIPKELVERLGLSEGDKLEIYEKDGVIYLMP 43 >gi|320449397|ref|YP_004201493.1| AbrB family transcriptional regulator [Thermus scotoductus SA-01] gi|320149566|gb|ADW20944.1| transcriptional regulator, AbrB family [Thermus scotoductus SA-01] Length=85 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 16/42 (39%), Positives = 27/42 (65%), Gaps = 0/42 (0%) Query 1 MRTTIDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIEIEP 42 MR+ + GR+ +P+R+RE LG+ D+VE R G++ + P Sbjct 1 MRSRVGSKGRITLPQRVREVLGVEPGDEVEFVIRGGQVFLRP 42 >gi|83590899|ref|YP_430908.1| AbrB family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83573813|gb|ABC20365.1| transcriptional regulator, AbrB family [Moorella thermoacetica ATCC 39073] Length=107 Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust. Identities = 17/41 (42%), Positives = 26/41 (64%), Gaps = 0/41 (0%) Query 5 IDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIEIEPAPT 45 I G+LVIP +R + GL+ + I E++G+I I PAP+ Sbjct 28 ISAKGQLVIPALLRRKYGLQAPGRALIIEKEGQIIITPAPS 68 >gi|288932737|ref|YP_003436797.1| AbrB family transcriptional regulator [Ferroglobus placidus DSM 10642] gi|288894985|gb|ADC66522.1| transcriptional regulator, AbrB family [Ferroglobus placidus DSM 10642] Length=90 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 17/40 (43%), Positives = 27/40 (68%), Gaps = 0/40 (0%) Query 1 MRTTIDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIEI 40 M+ +D GR+V+PK IRERLG+ N ++ ++ R+ I I Sbjct 1 MKVRVDRYGRIVLPKEIRERLGIHENSELTLSVREDEIVI 40 >gi|297617370|ref|YP_003702529.1| AbrB family transcriptional regulator [Syntrophothermus lipocalidus DSM 12680] gi|297145207|gb|ADI01964.1| transcriptional regulator, AbrB family [Syntrophothermus lipocalidus DSM 12680] Length=83 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 26/34 (77%), Gaps = 0/34 (0%) Query 9 GRLVIPKRIRERLGLRGNDQVEITERDGRIEIEP 42 G+LV+PK+IRE LGL+ +Q+++ GRI +EP Sbjct 10 GQLVLPKKIREHLGLKPGEQLKVDLIGGRIILEP 43 >gi|171321391|ref|ZP_02910344.1| transcriptional regulator, AbrB family [Burkholderia ambifaria MEX-5] gi|171093328|gb|EDT38523.1| transcriptional regulator, AbrB family [Burkholderia ambifaria MEX-5] Length=81 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/63 (34%), Positives = 35/63 (56%), Gaps = 5/63 (7%) Query 4 TIDVAGRLVIPKRIRERLGLRGNDQVEIT--ERDGRIEIEPAPTGVELVREGSVLVARPE 61 TI G++ IP +R +LGL D++E + E GR EI PA + ++ +V +P Sbjct 5 TITSKGQVTIPVDVRNQLGLASGDRIEFSFNETTGRYEIYPATRSLASLKG---IVKKPA 61 Query 62 RPL 64 +P+ Sbjct 62 KPV 64 >gi|115360421|ref|YP_777558.1| AbrB family transcriptional regulator [Burkholderia ambifaria AMMD] gi|170700925|ref|ZP_02891910.1| transcriptional regulator, AbrB family [Burkholderia ambifaria IOP40-10] gi|115285749|gb|ABI91224.1| transcriptional regulator, AbrB family [Burkholderia ambifaria AMMD] gi|170134165|gb|EDT02508.1| transcriptional regulator, AbrB family [Burkholderia ambifaria IOP40-10] Length=81 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/63 (34%), Positives = 35/63 (56%), Gaps = 5/63 (7%) Query 4 TIDVAGRLVIPKRIRERLGLRGNDQVEIT--ERDGRIEIEPAPTGVELVREGSVLVARPE 61 TI G++ IP +R +LGL D++E + E GR EI PA + ++ +V +P Sbjct 5 TITSKGQVTIPVDVRNQLGLASGDRIEFSFNETTGRYEIYPATRSLASLKG---IVKKPA 61 Query 62 RPL 64 +P+ Sbjct 62 KPV 64 >gi|229578672|ref|YP_002837070.1| AbrB family transcriptional regulator [Sulfolobus islandicus Y.G.57.14] gi|228009386|gb|ACP45148.1| transcriptional regulator, AbrB family [Sulfolobus islandicus Y.G.57.14] Length=76 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 18/36 (50%), Positives = 25/36 (70%), Gaps = 0/36 (0%) Query 3 TTIDVAGRLVIPKRIRERLGLRGNDQVEITERDGRI 38 T+D GR+VIPK IR++L L+ +VEI +GRI Sbjct 5 VTVDERGRIVIPKEIRDKLNLKEGSKVEINIENGRI 40 >gi|320161279|ref|YP_004174503.1| putative ABC transporter ATP-binding protein [Anaerolinea thermophila UNI-1] gi|319995132|dbj|BAJ63903.1| putative ABC transporter ATP-binding protein [Anaerolinea thermophila UNI-1] Length=349 Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/38 (56%), Positives = 26/38 (69%), Gaps = 2/38 (5%) Query 5 IDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIEIEP 42 +D AGRL IPK IRE LG+ +VE+ DGRI I+P Sbjct 270 LDSAGRLQIPKEIREELGI--GKRVEMQIEDGRIIIKP 305 >gi|289208707|ref|YP_003460773.1| AbrB family transcriptional regulator [Thioalkalivibrio sp. K90mix] gi|288944338|gb|ADC72037.1| transcriptional regulator, AbrB family [Thioalkalivibrio sp. K90mix] Length=68 Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/39 (47%), Positives = 25/39 (65%), Gaps = 0/39 (0%) Query 4 TIDVAGRLVIPKRIRERLGLRGNDQVEITERDGRIEIEP 42 TI ++VIPK +RE L LR +V++ DGRIE+ P Sbjct 5 TISPKYQVVIPKVVREALHLRAGQKVQVIAYDGRIELIP 43 >gi|121534973|ref|ZP_01666791.1| transcriptional regulator, AbrB family [Thermosinus carboxydivorans Nor1] gi|121306386|gb|EAX47310.1| transcriptional regulator, AbrB family [Thermosinus carboxydivorans Nor1] Length=92 Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust. Identities = 25/83 (31%), Positives = 38/83 (46%), Gaps = 8/83 (9%) Query 1 MRTTIDVAGRLVIPKRIRERLGLRGNDQVEITER---DGRIEIEPAPTGVELVREGSVLV 57 R + G++ +PK +RERLG++ +T DG + IEP PT L + Sbjct 4 FRIPVSSQGQITLPKPVRERLGIKSGKPSRVTIHVRGDGAVVIEPEPTVDSLFG-----I 58 Query 58 ARPERPLPPLTDEIVRETLDRTR 80 +P P+ P +RE L R Sbjct 59 LKPASPVKPANIYEIREALVHER 81 Lambda K H 0.319 0.141 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 128409240708 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40