BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2596

Length=134
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609733|ref|NP_217112.1|  hypothetical protein Rv2596 [Mycoba...   264    4e-69
gi|289762769|ref|ZP_06522147.1|  conserved hypothetical protein [...   263    4e-69
gi|31793780|ref|NP_856273.1|  hypothetical protein Mb2627 [Mycoba...   259    9e-68
gi|340627613|ref|YP_004746065.1|  hypothetical protein MCAN_26381...   257    3e-67
gi|15842135|ref|NP_337172.1|  hypothetical protein MT2672 [Mycoba...   250    4e-65
gi|336178805|ref|YP_004584180.1|  hypothetical protein FsymDg_293...   112    2e-23
gi|336119319|ref|YP_004574096.1|  hypothetical protein MLP_36790 ...  77.8    5e-13
gi|315446131|ref|YP_004079010.1|  PIN domain-containing protein [...  74.3    5e-12
gi|333989910|ref|YP_004522524.1|  hypothetical protein JDM601_127...  72.0    3e-11
gi|108797802|ref|YP_637999.1|  PilT protein-like protein [Mycobac...  70.1    1e-10
gi|306806415|ref|ZP_07443083.1|  toxin [Mycobacterium tuberculosi...  67.8    6e-10
gi|15607738|ref|NP_215112.1|  hypothetical protein Rv0598c [Mycob...  67.4    6e-10
gi|126433455|ref|YP_001069146.1|  PilT domain-containing protein ...  66.2    2e-09
gi|111219702|ref|YP_710496.1|  hypothetical protein FRAAL0206 [Fr...  65.9    2e-09
gi|288922493|ref|ZP_06416677.1|  PilT protein domain protein [Fra...  65.1    3e-09
gi|86741978|ref|YP_482378.1|  PilT protein-like protein [Frankia ...  63.9    7e-09
gi|306818933|ref|ZP_07452654.1|  PilT protein family protein [Mob...  63.5    9e-09
gi|269977131|ref|ZP_06184104.1|  toxin-antitoxin system, toxin co...  63.5    9e-09
gi|227875625|ref|ZP_03993764.1|  PilT protein family protein [Mob...  62.8    2e-08
gi|336119588|ref|YP_004574365.1|  hypothetical protein MLP_39480 ...  62.8    2e-08
gi|297567633|ref|YP_003686604.1|  hypothetical protein Mesil_3282...  61.6    4e-08
gi|158314179|ref|YP_001506687.1|  PilT domain-containing protein ...  60.8    6e-08
gi|299136185|ref|ZP_07029369.1|  PilT protein domain protein [Aci...  58.2    4e-07
gi|240169440|ref|ZP_04748099.1|  hypothetical protein MkanA1_0901...  56.2    1e-06
gi|334120341|ref|ZP_08494422.1|  PilT protein domain protein [Mic...  55.8    2e-06
gi|239904705|ref|YP_002951443.1|  hypothetical protein DMR_00660 ...  54.7    4e-06
gi|37521277|ref|NP_924654.1|  hypothetical protein gll1708 [Gloeo...  52.4    3e-05
gi|86741255|ref|YP_481655.1|  PilT protein-like protein [Frankia ...  51.2    4e-05
gi|153871622|ref|ZP_02000746.1|  PilT-like protein [Beggiatoa sp....  51.2    5e-05
gi|220908830|ref|YP_002484141.1|  PilT protein domain-containing ...  49.7    2e-04
gi|166368214|ref|YP_001660487.1|  PilT protein-like protein [Micr...  47.8    6e-04
gi|303246740|ref|ZP_07333017.1|  PilT protein domain protein [Des...  42.7    0.017
gi|86740896|ref|YP_481296.1|  hypothetical protein Francci3_2198 ...  37.7    0.60 
gi|341581387|ref|YP_004761879.1|  hypothetical protein GQS_01500 ...  36.6    1.2  
gi|330821084|ref|YP_004349946.1|  Threonine dehydrogenase-like Zn...  35.8    2.3  
gi|269219398|ref|ZP_06163252.1|  conserved hypothetical protein [...  35.0    3.6  
gi|229825102|ref|ZP_04451171.1|  hypothetical protein GCWU000182_...  35.0    3.7  
gi|331003751|ref|ZP_08327245.1|  hypothetical protein HMPREF0491_...  35.0    3.9  
gi|325283833|ref|YP_004256374.1|  PilT protein domain-containing ...  35.0    4.1  


>gi|15609733|ref|NP_217112.1| hypothetical protein Rv2596 [Mycobacterium tuberculosis H37Rv]
 gi|148662435|ref|YP_001283958.1| hypothetical protein MRA_2624 [Mycobacterium tuberculosis H37Ra]
 gi|148823790|ref|YP_001288544.1| hypothetical protein TBFG_12615 [Mycobacterium tuberculosis F11]
 44 more sequence titles
 Length=134

 Score =  264 bits (674),  Expect = 4e-69, Method: Compositional matrix adjust.
 Identities = 133/134 (99%), Positives = 134/134 (100%), Gaps = 0/134 (0%)

Query  1    VIAPDTSVLVAGFATWHEGHEAAVRALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVH  60
            +IAPDTSVLVAGFATWHEGHEAAVRALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVH
Sbjct  1    MIAPDTSVLVAGFATWHEGHEAAVRALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVH  60

Query  61   AYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAV  120
            AYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAV
Sbjct  61   AYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAV  120

Query  121  ETYERLRVEVELVT  134
            ETYERLRVEVELVT
Sbjct  121  ETYERLRVEVELVT  134


>gi|289762769|ref|ZP_06522147.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|289710275|gb|EFD74291.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
Length=134

 Score =  263 bits (673),  Expect = 4e-69, Method: Compositional matrix adjust.
 Identities = 132/134 (99%), Positives = 134/134 (100%), Gaps = 0/134 (0%)

Query  1    VIAPDTSVLVAGFATWHEGHEAAVRALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVH  60
            +IAPDTSVLVAGFATWHEGHEAAVRALNRG+HLIAHAAVETYSVLTRLPPPHRIAPVAVH
Sbjct  1    MIAPDTSVLVAGFATWHEGHEAAVRALNRGIHLIAHAAVETYSVLTRLPPPHRIAPVAVH  60

Query  61   AYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAV  120
            AYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAV
Sbjct  61   AYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAV  120

Query  121  ETYERLRVEVELVT  134
            ETYERLRVEVELVT
Sbjct  121  ETYERLRVEVELVT  134


>gi|31793780|ref|NP_856273.1| hypothetical protein Mb2627 [Mycobacterium bovis AF2122/97]
 gi|121638481|ref|YP_978705.1| hypothetical protein BCG_2619 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224990975|ref|YP_002645662.1| hypothetical protein JTY_2613 [Mycobacterium bovis BCG str. Tokyo 
172]
 28 more sequence titles
 Length=134

 Score =  259 bits (662),  Expect = 9e-68, Method: Compositional matrix adjust.
 Identities = 132/134 (99%), Positives = 133/134 (99%), Gaps = 0/134 (0%)

Query  1    VIAPDTSVLVAGFATWHEGHEAAVRALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVH  60
            +IAPDTSVLVAGFATWHEGHEAAVRALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVH
Sbjct  1    MIAPDTSVLVAGFATWHEGHEAAVRALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVH  60

Query  61   AYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAV  120
            AYLADITSSNYLALDA SYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAV
Sbjct  61   AYLADITSSNYLALDARSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAV  120

Query  121  ETYERLRVEVELVT  134
            ETYERLRVEVELVT
Sbjct  121  ETYERLRVEVELVT  134


>gi|340627613|ref|YP_004746065.1| hypothetical protein MCAN_26381 [Mycobacterium canettii CIPT 
140010059]
 gi|340005803|emb|CCC44969.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=134

 Score =  257 bits (657),  Expect = 3e-67, Method: Compositional matrix adjust.
 Identities = 131/134 (98%), Positives = 132/134 (99%), Gaps = 0/134 (0%)

Query  1    VIAPDTSVLVAGFATWHEGHEAAVRALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVH  60
            +IAPDTSVLVAGFATWHEGHEAAVRALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVH
Sbjct  1    MIAPDTSVLVAGFATWHEGHEAAVRALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVH  60

Query  61   AYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAV  120
            AYLADITSSNYLALDA SYRGL DHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAV
Sbjct  61   AYLADITSSNYLALDARSYRGLIDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAV  120

Query  121  ETYERLRVEVELVT  134
            ETYERLRVEVELVT
Sbjct  121  ETYERLRVEVELVT  134


>gi|15842135|ref|NP_337172.1| hypothetical protein MT2672 [Mycobacterium tuberculosis CDC1551]
 gi|13882420|gb|AAK46986.1| hypothetical protein MT2672 [Mycobacterium tuberculosis CDC1551]
Length=127

 Score =  250 bits (639),  Expect = 4e-65, Method: Compositional matrix adjust.
 Identities = 126/127 (99%), Positives = 127/127 (100%), Gaps = 0/127 (0%)

Query  8    VLVAGFATWHEGHEAAVRALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVHAYLADIT  67
            +LVAGFATWHEGHEAAVRALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVHAYLADIT
Sbjct  1    MLVAGFATWHEGHEAAVRALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVHAYLADIT  60

Query  68   SSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAVETYERLR  127
            SSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAVETYERLR
Sbjct  61   SSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAVETYERLR  120

Query  128  VEVELVT  134
            VEVELVT
Sbjct  121  VEVELVT  127


>gi|336178805|ref|YP_004584180.1| hypothetical protein FsymDg_2935 [Frankia symbiont of Datisca 
glomerata]
 gi|334859785|gb|AEH10259.1| hypothetical protein FsymDg_2935 [Frankia symbiont of Datisca 
glomerata]
Length=135

 Score =  112 bits (280),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 60/127 (48%), Positives = 78/127 (62%), Gaps = 0/127 (0%)

Query  5    DTSVLVAGFATWHEGHEAAVRALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVHAYLA  64
            DTSV+VA FA+WHE H  A +A+     L+AHAAVE+YSVLT LPPPHR  P  VHA++ 
Sbjct  5    DTSVVVACFASWHEHHAIARKAMACRPRLVAHAAVESYSVLTCLPPPHRAQPSIVHAFIT  64

Query  65   DITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAVETYE  124
            +  +  +L L    Y+ L   +    + GG  YDAL+ FTA    A L++ D RA  TYE
Sbjct  65   ERFTEPFLTLSETGYQELLATVTASQILGGPAYDALIAFTAAEHRATLMSLDQRAAATYE  124

Query  125  RLRVEVE  131
             + V VE
Sbjct  125  AVGVTVE  131


>gi|336119319|ref|YP_004574096.1| hypothetical protein MLP_36790 [Microlunatus phosphovorus NM-1]
 gi|334687108|dbj|BAK36693.1| hypothetical protein MLP_36790 [Microlunatus phosphovorus NM-1]
Length=144

 Score = 77.8 bits (190),  Expect = 5e-13, Method: Compositional matrix adjust.
 Identities = 55/133 (42%), Positives = 71/133 (54%), Gaps = 2/133 (1%)

Query  2    IAPDTSVLVAGFATWHEGHEAAVR-ALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVH  60
            ++ DTSV V      H+ H+A    A  R + +  HA  ETYSVLTRLP   R+AP    
Sbjct  11   VSVDTSVAVPLLVASHQHHDAVAEWARGRALSVSGHALAETYSVLTRLPGNSRVAP-GDA  69

Query  61   AYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAV  120
              L D +    L L A + + +   L+   + GGATYD L+   A+  GA L TRD RA 
Sbjct  70   VVLIDESFGGVLVLSADAAQTVHRELSGSGIAGGATYDGLMALAAREHGATLATRDARAR  129

Query  121  ETYERLRVEVELV  133
             TYE L V VE+V
Sbjct  130  ATYEALGVAVEVV  142


>gi|315446131|ref|YP_004079010.1| PIN domain-containing protein [Mycobacterium sp. Spyr1]
 gi|315264434|gb|ADU01176.1| PIN domain-containing protein [Mycobacterium sp. Spyr1]
Length=136

 Score = 74.3 bits (181),  Expect = 5e-12, Method: Compositional matrix adjust.
 Identities = 60/135 (45%), Positives = 70/135 (52%), Gaps = 4/135 (2%)

Query  1    VIAPDTSVLVAGFATWHEGHEAAVR-ALNRGVHLIAHAAVETYSVLTRLPPPHRIAPV-A  58
            V A DTSV V      H  H A  + A  + + L  HA  ETYSVLTRLP   R+ P  A
Sbjct  3    VTAVDTSVAVPLLVGSHREHAAVAKWAKGKTLGLSGHALTETYSVLTRLPGDARLLPQDA  62

Query  59   VHAYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLR  118
            V    A+ T+S  L L A   R     LA   + GGATYD LV   A+  G  L TRD R
Sbjct  63   VALIDANFTAS--LTLGARVARRAHRELARRGIGGGATYDGLVALAAREHGVVLATRDAR  120

Query  119  AVETYERLRVEVELV  133
            A  TYE L V+ E+V
Sbjct  121  ARATYEALSVDTEVV  135


>gi|333989910|ref|YP_004522524.1| hypothetical protein JDM601_1270 [Mycobacterium sp. JDM601]
 gi|333485878|gb|AEF35270.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=144

 Score = 72.0 bits (175),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 49/119 (42%), Positives = 63/119 (53%), Gaps = 3/119 (2%)

Query  16   WHEGHEAAVRALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVHAYLADITSSNYLALD  75
            +H   +A + A  RG  +  HAAVE  SVLTRLPPP R++PVA    L +        L 
Sbjct  25   FHHAAKARLLACRRG--MAGHAAVELLSVLTRLPPPQRLSPVAA-LRLQETNFPESRFLS  81

Query  76   ACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAVETYERLRVEVELVT  134
            A   + L    AE  + GGA YDALVG  A+     L++ D RA  TY  L V  EL++
Sbjct  82   ATDTKNLLREFAEVGLAGGALYDALVGAAARKHKLPLISCDRRAEPTYRVLGVNHELLS  140


>gi|108797802|ref|YP_637999.1| PilT protein-like protein [Mycobacterium sp. MCS]
 gi|119866895|ref|YP_936847.1| PilT domain-containing protein [Mycobacterium sp. KMS]
 gi|108768221|gb|ABG06943.1| PilT protein-like protein [Mycobacterium sp. MCS]
 gi|119692984|gb|ABL90057.1| PilT protein domain protein [Mycobacterium sp. KMS]
Length=144

 Score = 70.1 bits (170),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 57/134 (43%), Positives = 66/134 (50%), Gaps = 2/134 (1%)

Query  1    VIAPDTSVLVAGFATWHEGHEAAVR-ALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAV  59
            V A DTSV V      H  H    + A  R + L  HA  ETYSVLTRLP   R++P A 
Sbjct  6    VTAVDTSVAVPLLVASHRQHTLVAKWAKARPLGLSGHALAETYSVLTRLPGDARVSP-AD  64

Query  60   HAYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRA  119
               L D      L L A + R      A   + GGATYD LV   A+  GA L TRD RA
Sbjct  65   AVVLIDENFPESLQLGARAARAAHREFARRGIAGGATYDGLVALAARERGAVLFTRDARA  124

Query  120  VETYERLRVEVELV  133
              TYE L V  E++
Sbjct  125  RSTYEALGVRTEVL  138


>gi|306806415|ref|ZP_07443083.1| toxin [Mycobacterium tuberculosis SUMu007]
 gi|308347066|gb|EFP35917.1| toxin [Mycobacterium tuberculosis SUMu007]
Length=131

 Score = 67.8 bits (164),  Expect = 6e-10, Method: Compositional matrix adjust.
 Identities = 45/102 (45%), Positives = 59/102 (58%), Gaps = 1/102 (0%)

Query  29   RGVHLIAHAAVETYSVLTRLPPPHRIAPVAVHAYLADITSSNYLALDACSYRGLTDHLAE  88
            R   L  HA  ETYSVLTRLP   R+AP+     L +  ++  L L + +   L   LA+
Sbjct  27   REAALCGHALAETYSVLTRLPRDLRLAPMDAARLLTERFAAPLL-LSSRTTEHLPRVLAQ  85

Query  89   HDVTGGATYDALVGFTAKAAGAKLLTRDLRAVETYERLRVEV  130
             ++TGGA YDALV   A    A+L TRD RA +TYE++ V V
Sbjct  86   FEITGGAVYDALVALAAAEHRAELATRDARAKDTYEKIGVHV  127


>gi|15607738|ref|NP_215112.1| hypothetical protein Rv0598c [Mycobacterium tuberculosis H37Rv]
 gi|15840001|ref|NP_335038.1| hypothetical protein MT0628 [Mycobacterium tuberculosis CDC1551]
 gi|31791780|ref|NP_854273.1| hypothetical protein Mb0614c [Mycobacterium bovis AF2122/97]
 79 more sequence titles
 Length=137

 Score = 67.4 bits (163),  Expect = 6e-10, Method: Compositional matrix adjust.
 Identities = 45/102 (45%), Positives = 59/102 (58%), Gaps = 1/102 (0%)

Query  29   RGVHLIAHAAVETYSVLTRLPPPHRIAPVAVHAYLADITSSNYLALDACSYRGLTDHLAE  88
            R   L  HA  ETYSVLTRLP   R+AP+     L +  ++  L L + +   L   LA+
Sbjct  33   REAALCGHALAETYSVLTRLPRDLRLAPMDAARLLTERFAAPLL-LSSRTTEHLPRVLAQ  91

Query  89   HDVTGGATYDALVGFTAKAAGAKLLTRDLRAVETYERLRVEV  130
             ++TGGA YDALV   A    A+L TRD RA +TYE++ V V
Sbjct  92   FEITGGAVYDALVALAAAEHRAELATRDARAKDTYEKIGVHV  133


>gi|126433455|ref|YP_001069146.1| PilT domain-containing protein [Mycobacterium sp. JLS]
 gi|126233255|gb|ABN96655.1| PilT protein domain protein [Mycobacterium sp. JLS]
Length=141

 Score = 66.2 bits (160),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 54/130 (42%), Positives = 62/130 (48%), Gaps = 2/130 (1%)

Query  5    DTSVLVAGFATWHEGHEAAVR-ALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVHAYL  63
            DTSV V    T H  H    + A  R + L  HA  ETYSVLTRLP   R+   A    L
Sbjct  10   DTSVAVPLLVTSHRQHTMVAKWAKARPLGLSGHALAETYSVLTRLPGDARVT-AADAVAL  68

Query  64   ADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAVETY  123
             D        L A + R      A   + GGATYD LV   A+  GA L TRD RA  TY
Sbjct  69   IDENFPESFQLGARAARAAHREFARRGIAGGATYDGLVALAARERGAVLFTRDARARSTY  128

Query  124  ERLRVEVELV  133
            E L V  E++
Sbjct  129  EALGVSTEVL  138


>gi|111219702|ref|YP_710496.1| hypothetical protein FRAAL0206 [Frankia alni ACN14a]
 gi|111147234|emb|CAJ58884.1| conserved hypothetical protein [Frankia alni ACN14a]
Length=135

 Score = 65.9 bits (159),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 54/134 (41%), Positives = 71/134 (53%), Gaps = 4/134 (2%)

Query  2    IAPDTSVLVAGFATWHEGHEAAVRALN-RGVHLIAHAAVETYSVLTRLPPPHRIA-PVAV  59
            IA DTSV +      H+ H    R  + + + L  HA  ETYSVLTRLP   R++ P A 
Sbjct  3    IAVDTSVAIPLLVRSHQHHTDVARWWDGQQLTLSGHALAETYSVLTRLPGDARLSGPDA-  61

Query  60   HAYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRA  119
             A L D   +  LAL     + +   L++  + GGA YD LV   AKA G  L TRD RA
Sbjct  62   -ARLLDARFTAPLALSGPPAQEIHTTLSQLGIAGGAVYDGLVALAAKAHGLALATRDARA  120

Query  120  VETYERLRVEVELV  133
              TY+ + V++ LV
Sbjct  121  RGTYDAVGVKLILV  134


>gi|288922493|ref|ZP_06416677.1| PilT protein domain protein [Frankia sp. EUN1f]
 gi|288346157|gb|EFC80502.1| PilT protein domain protein [Frankia sp. EUN1f]
Length=135

 Score = 65.1 bits (157),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 55/134 (42%), Positives = 68/134 (51%), Gaps = 4/134 (2%)

Query  2    IAPDTSVLVAGFATWHEGHEAAVRALN-RGVHLIAHAAVETYSVLTRLPPPHRIA-PVAV  59
            IA DTSV V      H+ H    R    + + L  HA  ETYSVLTRLP   R++ P A 
Sbjct  3    IAVDTSVAVPLLVRSHQHHTDVARWWGGQQLTLSGHALAETYSVLTRLPGDARLSGPDA-  61

Query  60   HAYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRA  119
             A L D   +  L L     + +   L+   + GGA YD LV  TAK  G  L TRD RA
Sbjct  62   -ARLLDARFTAPLVLSGPPAQQIHTTLSRLGIVGGAVYDGLVALTAKEHGLALATRDARA  120

Query  120  VETYERLRVEVELV  133
              TY+ + V+V LV
Sbjct  121  RGTYDAVGVKVILV  134


>gi|86741978|ref|YP_482378.1| PilT protein-like protein [Frankia sp. CcI3]
 gi|86568840|gb|ABD12649.1| PilT protein-like [Frankia sp. CcI3]
Length=135

 Score = 63.9 bits (154),  Expect = 7e-09, Method: Compositional matrix adjust.
 Identities = 55/134 (42%), Positives = 69/134 (52%), Gaps = 4/134 (2%)

Query  2    IAPDTSVLVAGFATWHEGHEAAVRALN-RGVHLIAHAAVETYSVLTRLPPPHRIA-PVAV  59
            IA DTSV V      H  H   V+    R + L  +A VETYSVLTR+P   R++ P A 
Sbjct  3    IAVDTSVAVPLLVRSHTHHADVVQWWGGRELALSGYALVETYSVLTRMPGDARLSGPDA-  61

Query  60   HAYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRA  119
             A L D+  +  L L     R +   L+   + GGA YD LV   AK  G  L TRD RA
Sbjct  62   -ARLLDVRFTAPLTLSGPHARKVHATLSRVGIVGGAVYDGLVALAAKEHGLALATRDARA  120

Query  120  VETYERLRVEVELV  133
              TY+ L V+V +V
Sbjct  121  RGTYDALGVKVIVV  134


>gi|306818933|ref|ZP_07452654.1| PilT protein family protein [Mobiluncus mulieris ATCC 35239]
 gi|307700676|ref|ZP_07637701.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus 
mulieris FB024-16]
 gi|304648335|gb|EFM45639.1| PilT protein family protein [Mobiluncus mulieris ATCC 35239]
 gi|307613671|gb|EFN92915.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus 
mulieris FB024-16]
Length=139

 Score = 63.5 bits (153),  Expect = 9e-09, Method: Compositional matrix adjust.
 Identities = 52/127 (41%), Positives = 64/127 (51%), Gaps = 4/127 (3%)

Query  5    DTSVLVAGFATWHEGHEAAVR--ALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVHAY  62
            DTSV V    + H  H   VR  A ++ + L  HAA ETYSVLTRLP    +AP  V   
Sbjct  8    DTSVAVPLLQSAHTAHRM-VRNWATDKDLCLSGHAAFETYSVLTRLPYDLAVAPPDV-LR  65

Query  63   LADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAVET  122
            L +      + LD+ S       L    V+GG+ YD LVG  A   G  L TRD RA  T
Sbjct  66   LFEAWFLPAVFLDSTSQAQALPELVAAGVSGGSVYDGLVGLAAVKHGLTLATRDARAAST  125

Query  123  YERLRVE  129
            Y+ L V+
Sbjct  126  YQHLGVD  132


>gi|269977131|ref|ZP_06184104.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus 
mulieris 28-1]
 gi|269934434|gb|EEZ90995.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus 
mulieris 28-1]
Length=139

 Score = 63.5 bits (153),  Expect = 9e-09, Method: Compositional matrix adjust.
 Identities = 52/127 (41%), Positives = 64/127 (51%), Gaps = 4/127 (3%)

Query  5    DTSVLVAGFATWHEGHEAAVR--ALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVHAY  62
            DTSV V    + H  H   VR  A ++ + L  HAA ETYSVLTRLP    +AP  V   
Sbjct  8    DTSVAVPLLQSAHAAHRM-VRNWATDKDLCLSGHAAFETYSVLTRLPYDLAVAPPDV-LR  65

Query  63   LADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAVET  122
            L +      + LD+ S       L    V+GG+ YD LVG  A   G  L TRD RA  T
Sbjct  66   LFEAWFLPAVFLDSTSQAQALPELVAAGVSGGSVYDGLVGLAAVKHGLTLATRDARAAST  125

Query  123  YERLRVE  129
            Y+ L V+
Sbjct  126  YQHLGVD  132


>gi|227875625|ref|ZP_03993764.1| PilT protein family protein [Mobiluncus mulieris ATCC 35243]
 gi|227843810|gb|EEJ53980.1| PilT protein family protein [Mobiluncus mulieris ATCC 35243]
Length=139

 Score = 62.8 bits (151),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 51/127 (41%), Positives = 64/127 (51%), Gaps = 4/127 (3%)

Query  5    DTSVLVAGFATWHEGHEAAVR--ALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVHAY  62
            DTSV V    + H  H   VR  A ++ + L  HAA ETYSVLTRLP    ++P  V   
Sbjct  8    DTSVAVPLLQSAHTAHRM-VRNWATDKDLCLSGHAAFETYSVLTRLPYDLAVSPPDV-LR  65

Query  63   LADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAVET  122
            L +      + LD+ S       L    V+GG+ YD LVG  A   G  L TRD RA  T
Sbjct  66   LFEAWFLPAVFLDSTSQAQALPELVAAGVSGGSVYDGLVGLAAVKHGLTLATRDARAAST  125

Query  123  YERLRVE  129
            Y+ L V+
Sbjct  126  YQHLGVD  132


>gi|336119588|ref|YP_004574365.1| hypothetical protein MLP_39480 [Microlunatus phosphovorus NM-1]
 gi|334687377|dbj|BAK36962.1| hypothetical protein MLP_39480 [Microlunatus phosphovorus NM-1]
Length=142

 Score = 62.8 bits (151),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 51/132 (39%), Positives = 66/132 (50%), Gaps = 6/132 (4%)

Query  5    DTSVLVAGFATWHEGHEAAVRALNRG--VHLIAHAAVETYSVLTRLPPPHRIAP-VAVHA  61
            DTS  VA     H  H+A VR   RG  + L  HA  ET+SVLTRLP   R+AP  A+  
Sbjct  11   DTSAAVALVDPDHVAHDA-VRDRVRGHRLGLAGHAEFETFSVLTRLPGAKRVAPEAAIRL  69

Query  62   YLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAVE  121
                   + +L+  A     L   +    V GGA YDALV   A      L++RD RA+ 
Sbjct  70   IQIGFPETRHLSRTAAEL--LLTEVGRRGVAGGAVYDALVAAAAGEHALLLVSRDARAMA  127

Query  122  TYERLRVEVELV  133
            TY  + ++ ELV
Sbjct  128  TYRAMGIDAELV  139


>gi|297567633|ref|YP_003686604.1| hypothetical protein Mesil_3282 [Meiothermus silvanus DSM 9946]
 gi|296852082|gb|ADH65096.1| hypothetical protein Mesil_3282 [Meiothermus silvanus DSM 9946]
Length=147

 Score = 61.6 bits (148),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 47/124 (38%), Positives = 61/124 (50%), Gaps = 16/124 (12%)

Query  5    DTSVLVAGFATWHEGHEAAVRALNR---GVH---LIAHAAVETYSVLTRLP-----PPHR  53
            DTS LVA F   H  H AA   L +   GVH   +  H   E Y+VLTRLP     PP  
Sbjct  6    DTSSLVAAFVLSHPAHTAAWEWLEQTLEGVHDGAVATHTLAELYAVLTRLPLRPAIPP--  63

Query  54   IAPVAVHAYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTA-KAAGAKL  112
              PVA+     ++     +AL    YR +   L + ++ GGA YDAL+   A KA   +L
Sbjct  64   --PVALQLIEENLRGFQTIALSVADYRAVLQRLEKLNLVGGAIYDALIAQAALKAKAERL  121

Query  113  LTRD  116
            LT +
Sbjct  122  LTLN  125


>gi|158314179|ref|YP_001506687.1| PilT domain-containing protein [Frankia sp. EAN1pec]
 gi|158109584|gb|ABW11781.1| PilT protein domain protein [Frankia sp. EAN1pec]
Length=135

 Score = 60.8 bits (146),  Expect = 6e-08, Method: Compositional matrix adjust.
 Identities = 51/133 (39%), Positives = 65/133 (49%), Gaps = 2/133 (1%)

Query  2    IAPDTSVLVAGFATWHEGHEAAVRAL-NRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVH  60
            IA D SV V      H  HE  VR    R + L  HA  ETYSVLTR+P   R++  +  
Sbjct  3    IAVDASVAVPLLVRSHVQHEDVVRWWAGRELTLSGHALAETYSVLTRMPGDARLSG-SDA  61

Query  61   AYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAV  120
            A L D   +  L L     + +   L    + GGA YD LV   A+  G  L TRD RA 
Sbjct  62   ARLLDARFTAPLTLTGPVAQSVHTTLGRLGIAGGAVYDGLVALAAREHGLALATRDARAR  121

Query  121  ETYERLRVEVELV  133
             TY+ + V+V +V
Sbjct  122  GTYDAVGVKVVIV  134


>gi|299136185|ref|ZP_07029369.1| PilT protein domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298602309|gb|EFI58463.1| PilT protein domain protein [Acidobacterium sp. MP5ACTX8]
Length=141

 Score = 58.2 bits (139),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 41/114 (36%), Positives = 57/114 (50%), Gaps = 5/114 (4%)

Query  5    DTSVLVAGFATWHEGHEAAVR---ALNRGVHLI-AHAAVETYSVLTRLPPPHRIAPVAVH  60
            DTSVLV  F   H  HEA++R     NR      AH+ VE +S LTR+P  HRI+P    
Sbjct  6    DTSVLVPVFYGDHVHHEASLRLFIQFNRSTGCCGAHSLVEVFSTLTRMPGKHRISPEQAI  65

Query  61   AYLADITSS-NYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLL  113
             ++  I      +ALD   Y    +  A   + GG+ YDA++   A  A A ++
Sbjct  66   LFIGSIRERLTLIALDGDEYADTLEISAARGIVGGSIYDAMLAQCAIKAQAGII  119


>gi|240169440|ref|ZP_04748099.1| hypothetical protein MkanA1_09014 [Mycobacterium kansasii ATCC 
12478]
Length=101

 Score = 56.2 bits (134),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 37/96 (39%), Positives = 50/96 (53%), Gaps = 3/96 (3%)

Query  39   VETYSVLTRLPPPHRIAPVA-VHAYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATY  97
            +E  SVLTRLPPP R++P A +   + +   S +L+  A     L     +  + GGA Y
Sbjct  1    MELLSVLTRLPPPQRLSPAAALRLEVTNFPDSRFLS--ATDTADLLQEFVQAGLAGGALY  58

Query  98   DALVGFTAKAAGAKLLTRDLRAVETYERLRVEVELV  133
            D LVG  A+     L+T D RA  TY  L V  EL+
Sbjct  59   DGLVGAAAREHKLPLITCDRRAEPTYRVLGVTYELL  94


>gi|334120341|ref|ZP_08494422.1| PilT protein domain protein [Microcoleus vaginatus FGP-2]
 gi|333456688|gb|EGK85318.1| PilT protein domain protein [Microcoleus vaginatus FGP-2]
Length=144

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 38/116 (33%), Positives = 54/116 (47%), Gaps = 7/116 (6%)

Query  5    DTSVLVAGFATWHEGHEAA------VRALNRGVHLIAHAAVETYSVLTRLPPPHRIAP-V  57
            DTSVL+A     H  H  +      VRA      +  H   E YSVLTR+P   RI P +
Sbjct  6    DTSVLIAALIEDHPSHSQSLSWLERVRAREIDGFVSTHTIAELYSVLTRIPRQPRINPGL  65

Query  58   AVHAYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLL  113
            A    + +++S N + L A  Y+     +   ++ GG  YD L+   A  AG  +L
Sbjct  66   AQQLIVENLSSFNKVVLTAEDYQTTVSKMVSLNLPGGGIYDGLIAQAALKAGVDVL  121


>gi|239904705|ref|YP_002951443.1| hypothetical protein DMR_00660 [Desulfovibrio magneticus RS-1]
 gi|239794568|dbj|BAH73557.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length=143

 Score = 54.7 bits (130),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 42/117 (36%), Positives = 59/117 (51%), Gaps = 8/117 (6%)

Query  5    DTSVLVAGFATWHEGHEAAVR---ALNRG---VHLIAHAAVETYSVLTRLPPPHRIAPVA  58
            DTSVLVA     H  H+ A        RG   + + AH   ETY+ LT  P   RI+PVA
Sbjct  6    DTSVLVAAMVKSHPMHQRAFPWYLKSRRGEIEMAVAAHGLAETYACLTTYPSRPRISPVA  65

Query  59   VHAYLAD--ITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLL  113
              A L +  + +S  ++LD   Y    D +++   +GG+ YDAL    A+  GA L+
Sbjct  66   AMALLRESIVRTSTVVSLDGRDYLEALDMVSDKGRSGGSVYDALHVIAAEKNGADLV  122


>gi|37521277|ref|NP_924654.1| hypothetical protein gll1708 [Gloeobacter violaceus PCC 7421]
 gi|35212274|dbj|BAC89649.1| gll1708 [Gloeobacter violaceus PCC 7421]
Length=145

 Score = 52.4 bits (124),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 37/116 (32%), Positives = 54/116 (47%), Gaps = 7/116 (6%)

Query  5    DTSVLVAGFATWHEGHEAAVRALNRGVH------LIAHAAVETYSVLTRLPPPHRIAPVA  58
            DTSVLV      HE HE     + R         +      E+Y+VLTRLP   RI P+ 
Sbjct  6    DTSVLVPAIVHSHENHEICWSWVERARSGQVQGLMAVRTLAESYAVLTRLPLRPRIQPLL  65

Query  59   VHAYLADITS-SNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLL  113
                + +++     + L A  YR +   +AE  + GG  YDAL+  TA  + + +L
Sbjct  66   AKRLILEVSEYVTTVPLTAGDYRSVVALMAELGLPGGGIYDALIAQTALQSQSDVL  121


>gi|86741255|ref|YP_481655.1| PilT protein-like protein [Frankia sp. CcI3]
 gi|86568117|gb|ABD11926.1| PilT protein-like [Frankia sp. CcI3]
Length=133

 Score = 51.2 bits (121),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 48/123 (40%), Positives = 58/123 (48%), Gaps = 4/123 (3%)

Query  3    APDTSVLVAGFATWHEGHEAAVRALN-RGVHLIAHAAVETYSVLTRLPPPHRIA-PVAVH  60
            A DTSV V      H  H   VR  + R + L  HA  ETYSVLTRLP   R++ P A  
Sbjct  4    AVDTSVAVPLVVRSHTHHVDVVRWWDGRELTLSGHALAETYSVLTRLPGDARLSGPDA--  61

Query  61   AYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAV  120
            A L D   +   AL     + +   L+   + GGA YD LV    K     L TRD RA 
Sbjct  62   ARLLDARFTAPCALSGSHAQKVHTTLSRLGIAGGAVYDGLVALAVKEHDLALATRDARAR  121

Query  121  ETY  123
             T+
Sbjct  122  GTW  124


>gi|153871622|ref|ZP_02000746.1| PilT-like protein [Beggiatoa sp. PS]
 gi|152071909|gb|EDN69251.1| PilT-like protein [Beggiatoa sp. PS]
Length=146

 Score = 51.2 bits (121),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 34/107 (32%), Positives = 49/107 (46%), Gaps = 11/107 (10%)

Query  5    DTSVLVAGFATWHEGH-------EAAVRALNRGVHLIAHAAVETYSVLTRLP-PPHRIAP  56
            DTS LVA     H  H       +   + L++GV + AH+  E Y++LT  P  P RI+P
Sbjct  7    DTSTLVAALVESHPKHTLVLPWLQRVKKGLDKGV-VSAHSLAELYNILTIFPAKPRRISP  65

Query  57   VAVHAYLAD--ITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALV  101
                  +    +     + L    Y  +  HL+E  V GG  YDAL+
Sbjct  66   QEAQQLIQQNLLEVFEIITLSEQDYMSVIKHLSESGVIGGVIYDALI  112


>gi|220908830|ref|YP_002484141.1| PilT protein domain-containing protein [Cyanothece sp. PCC 7425]
 gi|219865441|gb|ACL45780.1| PilT protein domain protein [Cyanothece sp. PCC 7425]
Length=144

 Score = 49.7 bits (117),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 35/120 (30%), Positives = 54/120 (45%), Gaps = 8/120 (6%)

Query  5    DTSVLVAGFATWHEGHEAAVRAL------NRGVHLIAHAAVETYSVLTRLPPPHRIAPVA  58
            DTSV++A     H  H +    L          +L  H+  E YSV+TR+P   RI+P  
Sbjct  6    DTSVIIAALLPKHPSHASCFAQLLAAELNQIQGYLSTHSLAEVYSVMTRMPSQPRISPQE  65

Query  59   VHAYLAD-ITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTA-KAAGAKLLTRD  116
            V   L   +     + L+   YR     +   ++ GG  +DAL+   A K +  +LLT +
Sbjct  66   VQILLERCLQYLEVIPLEIADYRAAIALMTSLNLPGGGVFDALIAQAALKVSANQLLTLN  125


>gi|166368214|ref|YP_001660487.1| PilT protein-like protein [Microcystis aeruginosa NIES-843]
 gi|166090587|dbj|BAG05295.1| PilT protein-like protein [Microcystis aeruginosa NIES-843]
Length=143

 Score = 47.8 bits (112),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 34/105 (33%), Positives = 54/105 (52%), Gaps = 8/105 (7%)

Query  5    DTSVLVAGFATWHEGHEAAV----RALNRGVH-LIA-HAAVETYSVLTRLPPPHRIAPVA  58
            DTS L+A   T H  H A +    +A ++ +  LIA H   E YSVLTR+P   +I+P  
Sbjct  6    DTSALIAALLTGHTHHSACLPFLLQAQSQQIQGLIATHTLAELYSVLTRIPKT-KISPAV  64

Query  59   VHAYLAD-ITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVG  102
                + D + + + ++L A  Y    D + +  + GG  +DAL+ 
Sbjct  65   AQNLIRDNLQTFDTVSLTAEDYTAAIDLMVQRQLPGGGIFDALIA  109


>gi|303246740|ref|ZP_07333017.1| PilT protein domain protein [Desulfovibrio fructosovorans JJ]
 gi|302491757|gb|EFL51637.1| PilT protein domain protein [Desulfovibrio fructosovorans JJ]
Length=143

 Score = 42.7 bits (99),  Expect = 0.017, Method: Compositional matrix adjust.
 Identities = 38/117 (33%), Positives = 54/117 (47%), Gaps = 8/117 (6%)

Query  5    DTSVLVAGFATWHEGHEAAVR---ALNRG---VHLIAHAAVETYSVLTRLPPPHRIAPVA  58
            DTSVLVA     H  H+ A        RG   + + AH   ETY+ LT  P   RI+P +
Sbjct  6    DTSVLVAALVQSHPQHQRAFAWYLKCRRGELEMLVAAHGLAETYASLTVYPARPRISPRS  65

Query  59   VHAYL--ADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLL  113
                L  + +   + + LD   Y    + +A     GG+ YDAL    A+  GA+L+
Sbjct  66   AAMLLQASVLGVCSVITLDCRDYVAAMESVARIGRGGGSIYDALHVVAARKGGAELV  122


>gi|86740896|ref|YP_481296.1| hypothetical protein Francci3_2198 [Frankia sp. CcI3]
 gi|86567758|gb|ABD11567.1| hypothetical protein Francci3_2198 [Frankia sp. CcI3]
Length=70

 Score = 37.7 bits (86),  Expect = 0.60, Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 0/40 (0%)

Query  91   VTGGATYDALVGFTAKAAGAKLLTRDLRAVETYERLRVEV  130
            + GG  YDAL+ FTA    A L++ D RA  TYE + + V
Sbjct  26   ILGGPAYDALIAFTAAEHQATLMSLDQRAAATYEAIGITV  65


>gi|341581387|ref|YP_004761879.1| hypothetical protein GQS_01500 [Thermococcus sp. 4557]
 gi|340809045|gb|AEK72202.1| hypothetical protein GQS_01500 [Thermococcus sp. 4557]
Length=156

 Score = 36.6 bits (83),  Expect = 1.2, Method: Compositional matrix adjust.
 Identities = 46/150 (31%), Positives = 57/150 (38%), Gaps = 31/150 (20%)

Query  5    DTSVLVAGFATWHEGHEAAVRALNRGVHLIAH------------------AAVETYSVLT  46
            DTSVLV GF          +      VHL A                   A VET +VL 
Sbjct  10   DTSVLVKGFLPPLRRKHDEIYYRQLSVHLKAKELLKKAQNGEFILHEPVIALVETSTVLW  69

Query  47   RLPPPHRIAPVAVHAYLADIT---SSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGF  103
            RL    RI  V V  +L   +   S  YL  DA         L     TG + +D L   
Sbjct  70   RLSKSERIVDVGVE-FLETYSIFYSDVYLMEDAM-------KLGRE--TGASGFDVLFLA  119

Query  104  TAKAAGAKLLTRDLRAVETYERLRVEVELV  133
             AK   AKL+T D +  E   +  +E EL+
Sbjct  120  CAKKVNAKLITDDKKMYEKAVKAGIEAELL  149


>gi|330821084|ref|YP_004349946.1| Threonine dehydrogenase-like Zn-dependent dehydrogenase [Burkholderia 
gladioli BSR3]
 gi|327373079|gb|AEA64434.1| Threonine dehydrogenase-like Zn-dependent dehydrogenase [Burkholderia 
gladioli BSR3]
Length=399

 Score = 35.8 bits (81),  Expect = 2.3, Method: Compositional matrix adjust.
 Identities = 30/111 (28%), Positives = 52/111 (47%), Gaps = 14/111 (12%)

Query  14   ATWHEGHEAAVRALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVHAYLADITSSNYLA  73
            A W  G+  + +AL   V ++A A   T  ++   PP HR+ P+   A   ++T    L 
Sbjct  290  ANWIPGNGPS-QALQAAVQMVAKAG--TIGIIGVYPPQHRVFPIG-EAMNRNLT----LK  341

Query  74   LDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAVETYE  124
            +  C++R +   L E  +  G T+D L   T +    + LT  + A  T++
Sbjct  342  MGNCNHRTIAPRLVE--LVAGGTFDPLSVLTQR----EPLTSAIEAYRTFD  386


>gi|269219398|ref|ZP_06163252.1| conserved hypothetical protein [Actinomyces sp. oral taxon 848 
str. F0332]
 gi|269211191|gb|EEZ77531.1| conserved hypothetical protein [Actinomyces sp. oral taxon 848 
str. F0332]
Length=192

 Score = 35.0 bits (79),  Expect = 3.6, Method: Compositional matrix adjust.
 Identities = 23/63 (37%), Positives = 34/63 (54%), Gaps = 3/63 (4%)

Query  45   LTRLPPPHRIAPVAVHAYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFT  104
            ++++PPP +IAP AV A  A+I  S   +LD  SYRG    +  +D  G   +D  +   
Sbjct  28   VSQIPPPAKIAPWAV-ALQAEINDS--ASLDPDSYRGNARFVLLYDPEGQPAWDGTIRIV  84

Query  105  AKA  107
            A A
Sbjct  85   AYA  87


>gi|229825102|ref|ZP_04451171.1| hypothetical protein GCWU000182_00452 [Abiotrophia defectiva 
ATCC 49176]
 gi|229790474|gb|EEP26588.1| hypothetical protein GCWU000182_00452 [Abiotrophia defectiva 
ATCC 49176]
Length=1023

 Score = 35.0 bits (79),  Expect = 3.7, Method: Composition-based stats.
 Identities = 16/47 (35%), Positives = 25/47 (54%), Gaps = 1/47 (2%)

Query  4    PDTSVLVAGFATWHEGHEAAVRALNRGVHLIAHAAVETYSVLTRLPP  50
            PD S L+AGF+ W   H   V+   +G+ +IA A  +    + +L P
Sbjct  73   PDAS-LIAGFSAWKNSHGRTVKKGEKGIRIIAPAPFKVRQKMEKLDP  118


>gi|331003751|ref|ZP_08327245.1| hypothetical protein HMPREF0491_02107 [Lachnospiraceae oral taxon 
107 str. F0167]
 gi|330412134|gb|EGG91529.1| hypothetical protein HMPREF0491_02107 [Lachnospiraceae oral taxon 
107 str. F0167]
Length=1023

 Score = 35.0 bits (79),  Expect = 3.9, Method: Composition-based stats.
 Identities = 16/47 (35%), Positives = 25/47 (54%), Gaps = 1/47 (2%)

Query  4    PDTSVLVAGFATWHEGHEAAVRALNRGVHLIAHAAVETYSVLTRLPP  50
            PD S L+AGF+ W   H   V+   +G+ +IA A  +    + +L P
Sbjct  73   PDAS-LIAGFSAWKNSHGRTVKKGGKGIRIIAPAPFKVRQKMEKLDP  118


>gi|325283833|ref|YP_004256374.1| PilT protein domain-containing protein [Deinococcus proteolyticus 
MRP]
 gi|324315642|gb|ADY26757.1| PilT protein domain protein [Deinococcus proteolyticus MRP]
Length=139

 Score = 35.0 bits (79),  Expect = 4.1, Method: Compositional matrix adjust.
 Identities = 30/103 (30%), Positives = 45/103 (44%), Gaps = 10/103 (9%)

Query  5    DTSVLVAGFATWHEGHEAAVRALNRG--VHLIAHAAVETYSVLTRLP----PPHRIAPVA  58
            DTSV+VA     H  H  A+R   +   + + AH+  E Y V+   P     P +  P+ 
Sbjct  7    DTSVIVASIYPEHPQHAWALRQRQKAEALAMSAHSLAEVYKVIKGHPRIKLSPSQATPLL  66

Query  59   VHAYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALV  101
                LAD      + L   SY       A+H ++G   +DAL+
Sbjct  67   --RALAD--QVRVIPLTEASYHAALTRCAKHQLSGSVIFDALI  105



Lambda     K      H
   0.320    0.133    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 129924441710


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40