BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2596
Length=134
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609733|ref|NP_217112.1| hypothetical protein Rv2596 [Mycoba... 264 4e-69
gi|289762769|ref|ZP_06522147.1| conserved hypothetical protein [... 263 4e-69
gi|31793780|ref|NP_856273.1| hypothetical protein Mb2627 [Mycoba... 259 9e-68
gi|340627613|ref|YP_004746065.1| hypothetical protein MCAN_26381... 257 3e-67
gi|15842135|ref|NP_337172.1| hypothetical protein MT2672 [Mycoba... 250 4e-65
gi|336178805|ref|YP_004584180.1| hypothetical protein FsymDg_293... 112 2e-23
gi|336119319|ref|YP_004574096.1| hypothetical protein MLP_36790 ... 77.8 5e-13
gi|315446131|ref|YP_004079010.1| PIN domain-containing protein [... 74.3 5e-12
gi|333989910|ref|YP_004522524.1| hypothetical protein JDM601_127... 72.0 3e-11
gi|108797802|ref|YP_637999.1| PilT protein-like protein [Mycobac... 70.1 1e-10
gi|306806415|ref|ZP_07443083.1| toxin [Mycobacterium tuberculosi... 67.8 6e-10
gi|15607738|ref|NP_215112.1| hypothetical protein Rv0598c [Mycob... 67.4 6e-10
gi|126433455|ref|YP_001069146.1| PilT domain-containing protein ... 66.2 2e-09
gi|111219702|ref|YP_710496.1| hypothetical protein FRAAL0206 [Fr... 65.9 2e-09
gi|288922493|ref|ZP_06416677.1| PilT protein domain protein [Fra... 65.1 3e-09
gi|86741978|ref|YP_482378.1| PilT protein-like protein [Frankia ... 63.9 7e-09
gi|306818933|ref|ZP_07452654.1| PilT protein family protein [Mob... 63.5 9e-09
gi|269977131|ref|ZP_06184104.1| toxin-antitoxin system, toxin co... 63.5 9e-09
gi|227875625|ref|ZP_03993764.1| PilT protein family protein [Mob... 62.8 2e-08
gi|336119588|ref|YP_004574365.1| hypothetical protein MLP_39480 ... 62.8 2e-08
gi|297567633|ref|YP_003686604.1| hypothetical protein Mesil_3282... 61.6 4e-08
gi|158314179|ref|YP_001506687.1| PilT domain-containing protein ... 60.8 6e-08
gi|299136185|ref|ZP_07029369.1| PilT protein domain protein [Aci... 58.2 4e-07
gi|240169440|ref|ZP_04748099.1| hypothetical protein MkanA1_0901... 56.2 1e-06
gi|334120341|ref|ZP_08494422.1| PilT protein domain protein [Mic... 55.8 2e-06
gi|239904705|ref|YP_002951443.1| hypothetical protein DMR_00660 ... 54.7 4e-06
gi|37521277|ref|NP_924654.1| hypothetical protein gll1708 [Gloeo... 52.4 3e-05
gi|86741255|ref|YP_481655.1| PilT protein-like protein [Frankia ... 51.2 4e-05
gi|153871622|ref|ZP_02000746.1| PilT-like protein [Beggiatoa sp.... 51.2 5e-05
gi|220908830|ref|YP_002484141.1| PilT protein domain-containing ... 49.7 2e-04
gi|166368214|ref|YP_001660487.1| PilT protein-like protein [Micr... 47.8 6e-04
gi|303246740|ref|ZP_07333017.1| PilT protein domain protein [Des... 42.7 0.017
gi|86740896|ref|YP_481296.1| hypothetical protein Francci3_2198 ... 37.7 0.60
gi|341581387|ref|YP_004761879.1| hypothetical protein GQS_01500 ... 36.6 1.2
gi|330821084|ref|YP_004349946.1| Threonine dehydrogenase-like Zn... 35.8 2.3
gi|269219398|ref|ZP_06163252.1| conserved hypothetical protein [... 35.0 3.6
gi|229825102|ref|ZP_04451171.1| hypothetical protein GCWU000182_... 35.0 3.7
gi|331003751|ref|ZP_08327245.1| hypothetical protein HMPREF0491_... 35.0 3.9
gi|325283833|ref|YP_004256374.1| PilT protein domain-containing ... 35.0 4.1
>gi|15609733|ref|NP_217112.1| hypothetical protein Rv2596 [Mycobacterium tuberculosis H37Rv]
gi|148662435|ref|YP_001283958.1| hypothetical protein MRA_2624 [Mycobacterium tuberculosis H37Ra]
gi|148823790|ref|YP_001288544.1| hypothetical protein TBFG_12615 [Mycobacterium tuberculosis F11]
44 more sequence titles
Length=134
Score = 264 bits (674), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 133/134 (99%), Positives = 134/134 (100%), Gaps = 0/134 (0%)
Query 1 VIAPDTSVLVAGFATWHEGHEAAVRALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVH 60
+IAPDTSVLVAGFATWHEGHEAAVRALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVH
Sbjct 1 MIAPDTSVLVAGFATWHEGHEAAVRALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVH 60
Query 61 AYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAV 120
AYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAV
Sbjct 61 AYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAV 120
Query 121 ETYERLRVEVELVT 134
ETYERLRVEVELVT
Sbjct 121 ETYERLRVEVELVT 134
>gi|289762769|ref|ZP_06522147.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
1503]
gi|289710275|gb|EFD74291.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
1503]
Length=134
Score = 263 bits (673), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 132/134 (99%), Positives = 134/134 (100%), Gaps = 0/134 (0%)
Query 1 VIAPDTSVLVAGFATWHEGHEAAVRALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVH 60
+IAPDTSVLVAGFATWHEGHEAAVRALNRG+HLIAHAAVETYSVLTRLPPPHRIAPVAVH
Sbjct 1 MIAPDTSVLVAGFATWHEGHEAAVRALNRGIHLIAHAAVETYSVLTRLPPPHRIAPVAVH 60
Query 61 AYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAV 120
AYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAV
Sbjct 61 AYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAV 120
Query 121 ETYERLRVEVELVT 134
ETYERLRVEVELVT
Sbjct 121 ETYERLRVEVELVT 134
>gi|31793780|ref|NP_856273.1| hypothetical protein Mb2627 [Mycobacterium bovis AF2122/97]
gi|121638481|ref|YP_978705.1| hypothetical protein BCG_2619 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224990975|ref|YP_002645662.1| hypothetical protein JTY_2613 [Mycobacterium bovis BCG str. Tokyo
172]
28 more sequence titles
Length=134
Score = 259 bits (662), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 132/134 (99%), Positives = 133/134 (99%), Gaps = 0/134 (0%)
Query 1 VIAPDTSVLVAGFATWHEGHEAAVRALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVH 60
+IAPDTSVLVAGFATWHEGHEAAVRALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVH
Sbjct 1 MIAPDTSVLVAGFATWHEGHEAAVRALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVH 60
Query 61 AYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAV 120
AYLADITSSNYLALDA SYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAV
Sbjct 61 AYLADITSSNYLALDARSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAV 120
Query 121 ETYERLRVEVELVT 134
ETYERLRVEVELVT
Sbjct 121 ETYERLRVEVELVT 134
>gi|340627613|ref|YP_004746065.1| hypothetical protein MCAN_26381 [Mycobacterium canettii CIPT
140010059]
gi|340005803|emb|CCC44969.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=134
Score = 257 bits (657), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 131/134 (98%), Positives = 132/134 (99%), Gaps = 0/134 (0%)
Query 1 VIAPDTSVLVAGFATWHEGHEAAVRALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVH 60
+IAPDTSVLVAGFATWHEGHEAAVRALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVH
Sbjct 1 MIAPDTSVLVAGFATWHEGHEAAVRALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVH 60
Query 61 AYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAV 120
AYLADITSSNYLALDA SYRGL DHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAV
Sbjct 61 AYLADITSSNYLALDARSYRGLIDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAV 120
Query 121 ETYERLRVEVELVT 134
ETYERLRVEVELVT
Sbjct 121 ETYERLRVEVELVT 134
>gi|15842135|ref|NP_337172.1| hypothetical protein MT2672 [Mycobacterium tuberculosis CDC1551]
gi|13882420|gb|AAK46986.1| hypothetical protein MT2672 [Mycobacterium tuberculosis CDC1551]
Length=127
Score = 250 bits (639), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 126/127 (99%), Positives = 127/127 (100%), Gaps = 0/127 (0%)
Query 8 VLVAGFATWHEGHEAAVRALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVHAYLADIT 67
+LVAGFATWHEGHEAAVRALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVHAYLADIT
Sbjct 1 MLVAGFATWHEGHEAAVRALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVHAYLADIT 60
Query 68 SSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAVETYERLR 127
SSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAVETYERLR
Sbjct 61 SSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAVETYERLR 120
Query 128 VEVELVT 134
VEVELVT
Sbjct 121 VEVELVT 127
>gi|336178805|ref|YP_004584180.1| hypothetical protein FsymDg_2935 [Frankia symbiont of Datisca
glomerata]
gi|334859785|gb|AEH10259.1| hypothetical protein FsymDg_2935 [Frankia symbiont of Datisca
glomerata]
Length=135
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/127 (48%), Positives = 78/127 (62%), Gaps = 0/127 (0%)
Query 5 DTSVLVAGFATWHEGHEAAVRALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVHAYLA 64
DTSV+VA FA+WHE H A +A+ L+AHAAVE+YSVLT LPPPHR P VHA++
Sbjct 5 DTSVVVACFASWHEHHAIARKAMACRPRLVAHAAVESYSVLTCLPPPHRAQPSIVHAFIT 64
Query 65 DITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAVETYE 124
+ + +L L Y+ L + + GG YDAL+ FTA A L++ D RA TYE
Sbjct 65 ERFTEPFLTLSETGYQELLATVTASQILGGPAYDALIAFTAAEHRATLMSLDQRAAATYE 124
Query 125 RLRVEVE 131
+ V VE
Sbjct 125 AVGVTVE 131
>gi|336119319|ref|YP_004574096.1| hypothetical protein MLP_36790 [Microlunatus phosphovorus NM-1]
gi|334687108|dbj|BAK36693.1| hypothetical protein MLP_36790 [Microlunatus phosphovorus NM-1]
Length=144
Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/133 (42%), Positives = 71/133 (54%), Gaps = 2/133 (1%)
Query 2 IAPDTSVLVAGFATWHEGHEAAVR-ALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVH 60
++ DTSV V H+ H+A A R + + HA ETYSVLTRLP R+AP
Sbjct 11 VSVDTSVAVPLLVASHQHHDAVAEWARGRALSVSGHALAETYSVLTRLPGNSRVAP-GDA 69
Query 61 AYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAV 120
L D + L L A + + + L+ + GGATYD L+ A+ GA L TRD RA
Sbjct 70 VVLIDESFGGVLVLSADAAQTVHRELSGSGIAGGATYDGLMALAAREHGATLATRDARAR 129
Query 121 ETYERLRVEVELV 133
TYE L V VE+V
Sbjct 130 ATYEALGVAVEVV 142
>gi|315446131|ref|YP_004079010.1| PIN domain-containing protein [Mycobacterium sp. Spyr1]
gi|315264434|gb|ADU01176.1| PIN domain-containing protein [Mycobacterium sp. Spyr1]
Length=136
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/135 (45%), Positives = 70/135 (52%), Gaps = 4/135 (2%)
Query 1 VIAPDTSVLVAGFATWHEGHEAAVR-ALNRGVHLIAHAAVETYSVLTRLPPPHRIAPV-A 58
V A DTSV V H H A + A + + L HA ETYSVLTRLP R+ P A
Sbjct 3 VTAVDTSVAVPLLVGSHREHAAVAKWAKGKTLGLSGHALTETYSVLTRLPGDARLLPQDA 62
Query 59 VHAYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLR 118
V A+ T+S L L A R LA + GGATYD LV A+ G L TRD R
Sbjct 63 VALIDANFTAS--LTLGARVARRAHRELARRGIGGGATYDGLVALAAREHGVVLATRDAR 120
Query 119 AVETYERLRVEVELV 133
A TYE L V+ E+V
Sbjct 121 ARATYEALSVDTEVV 135
>gi|333989910|ref|YP_004522524.1| hypothetical protein JDM601_1270 [Mycobacterium sp. JDM601]
gi|333485878|gb|AEF35270.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=144
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/119 (42%), Positives = 63/119 (53%), Gaps = 3/119 (2%)
Query 16 WHEGHEAAVRALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVHAYLADITSSNYLALD 75
+H +A + A RG + HAAVE SVLTRLPPP R++PVA L + L
Sbjct 25 FHHAAKARLLACRRG--MAGHAAVELLSVLTRLPPPQRLSPVAA-LRLQETNFPESRFLS 81
Query 76 ACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAVETYERLRVEVELVT 134
A + L AE + GGA YDALVG A+ L++ D RA TY L V EL++
Sbjct 82 ATDTKNLLREFAEVGLAGGALYDALVGAAARKHKLPLISCDRRAEPTYRVLGVNHELLS 140
>gi|108797802|ref|YP_637999.1| PilT protein-like protein [Mycobacterium sp. MCS]
gi|119866895|ref|YP_936847.1| PilT domain-containing protein [Mycobacterium sp. KMS]
gi|108768221|gb|ABG06943.1| PilT protein-like protein [Mycobacterium sp. MCS]
gi|119692984|gb|ABL90057.1| PilT protein domain protein [Mycobacterium sp. KMS]
Length=144
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/134 (43%), Positives = 66/134 (50%), Gaps = 2/134 (1%)
Query 1 VIAPDTSVLVAGFATWHEGHEAAVR-ALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAV 59
V A DTSV V H H + A R + L HA ETYSVLTRLP R++P A
Sbjct 6 VTAVDTSVAVPLLVASHRQHTLVAKWAKARPLGLSGHALAETYSVLTRLPGDARVSP-AD 64
Query 60 HAYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRA 119
L D L L A + R A + GGATYD LV A+ GA L TRD RA
Sbjct 65 AVVLIDENFPESLQLGARAARAAHREFARRGIAGGATYDGLVALAARERGAVLFTRDARA 124
Query 120 VETYERLRVEVELV 133
TYE L V E++
Sbjct 125 RSTYEALGVRTEVL 138
>gi|306806415|ref|ZP_07443083.1| toxin [Mycobacterium tuberculosis SUMu007]
gi|308347066|gb|EFP35917.1| toxin [Mycobacterium tuberculosis SUMu007]
Length=131
Score = 67.8 bits (164), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/102 (45%), Positives = 59/102 (58%), Gaps = 1/102 (0%)
Query 29 RGVHLIAHAAVETYSVLTRLPPPHRIAPVAVHAYLADITSSNYLALDACSYRGLTDHLAE 88
R L HA ETYSVLTRLP R+AP+ L + ++ L L + + L LA+
Sbjct 27 REAALCGHALAETYSVLTRLPRDLRLAPMDAARLLTERFAAPLL-LSSRTTEHLPRVLAQ 85
Query 89 HDVTGGATYDALVGFTAKAAGAKLLTRDLRAVETYERLRVEV 130
++TGGA YDALV A A+L TRD RA +TYE++ V V
Sbjct 86 FEITGGAVYDALVALAAAEHRAELATRDARAKDTYEKIGVHV 127
>gi|15607738|ref|NP_215112.1| hypothetical protein Rv0598c [Mycobacterium tuberculosis H37Rv]
gi|15840001|ref|NP_335038.1| hypothetical protein MT0628 [Mycobacterium tuberculosis CDC1551]
gi|31791780|ref|NP_854273.1| hypothetical protein Mb0614c [Mycobacterium bovis AF2122/97]
79 more sequence titles
Length=137
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/102 (45%), Positives = 59/102 (58%), Gaps = 1/102 (0%)
Query 29 RGVHLIAHAAVETYSVLTRLPPPHRIAPVAVHAYLADITSSNYLALDACSYRGLTDHLAE 88
R L HA ETYSVLTRLP R+AP+ L + ++ L L + + L LA+
Sbjct 33 REAALCGHALAETYSVLTRLPRDLRLAPMDAARLLTERFAAPLL-LSSRTTEHLPRVLAQ 91
Query 89 HDVTGGATYDALVGFTAKAAGAKLLTRDLRAVETYERLRVEV 130
++TGGA YDALV A A+L TRD RA +TYE++ V V
Sbjct 92 FEITGGAVYDALVALAAAEHRAELATRDARAKDTYEKIGVHV 133
>gi|126433455|ref|YP_001069146.1| PilT domain-containing protein [Mycobacterium sp. JLS]
gi|126233255|gb|ABN96655.1| PilT protein domain protein [Mycobacterium sp. JLS]
Length=141
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/130 (42%), Positives = 62/130 (48%), Gaps = 2/130 (1%)
Query 5 DTSVLVAGFATWHEGHEAAVR-ALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVHAYL 63
DTSV V T H H + A R + L HA ETYSVLTRLP R+ A L
Sbjct 10 DTSVAVPLLVTSHRQHTMVAKWAKARPLGLSGHALAETYSVLTRLPGDARVT-AADAVAL 68
Query 64 ADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAVETY 123
D L A + R A + GGATYD LV A+ GA L TRD RA TY
Sbjct 69 IDENFPESFQLGARAARAAHREFARRGIAGGATYDGLVALAARERGAVLFTRDARARSTY 128
Query 124 ERLRVEVELV 133
E L V E++
Sbjct 129 EALGVSTEVL 138
>gi|111219702|ref|YP_710496.1| hypothetical protein FRAAL0206 [Frankia alni ACN14a]
gi|111147234|emb|CAJ58884.1| conserved hypothetical protein [Frankia alni ACN14a]
Length=135
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/134 (41%), Positives = 71/134 (53%), Gaps = 4/134 (2%)
Query 2 IAPDTSVLVAGFATWHEGHEAAVRALN-RGVHLIAHAAVETYSVLTRLPPPHRIA-PVAV 59
IA DTSV + H+ H R + + + L HA ETYSVLTRLP R++ P A
Sbjct 3 IAVDTSVAIPLLVRSHQHHTDVARWWDGQQLTLSGHALAETYSVLTRLPGDARLSGPDA- 61
Query 60 HAYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRA 119
A L D + LAL + + L++ + GGA YD LV AKA G L TRD RA
Sbjct 62 -ARLLDARFTAPLALSGPPAQEIHTTLSQLGIAGGAVYDGLVALAAKAHGLALATRDARA 120
Query 120 VETYERLRVEVELV 133
TY+ + V++ LV
Sbjct 121 RGTYDAVGVKLILV 134
>gi|288922493|ref|ZP_06416677.1| PilT protein domain protein [Frankia sp. EUN1f]
gi|288346157|gb|EFC80502.1| PilT protein domain protein [Frankia sp. EUN1f]
Length=135
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/134 (42%), Positives = 68/134 (51%), Gaps = 4/134 (2%)
Query 2 IAPDTSVLVAGFATWHEGHEAAVRALN-RGVHLIAHAAVETYSVLTRLPPPHRIA-PVAV 59
IA DTSV V H+ H R + + L HA ETYSVLTRLP R++ P A
Sbjct 3 IAVDTSVAVPLLVRSHQHHTDVARWWGGQQLTLSGHALAETYSVLTRLPGDARLSGPDA- 61
Query 60 HAYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRA 119
A L D + L L + + L+ + GGA YD LV TAK G L TRD RA
Sbjct 62 -ARLLDARFTAPLVLSGPPAQQIHTTLSRLGIVGGAVYDGLVALTAKEHGLALATRDARA 120
Query 120 VETYERLRVEVELV 133
TY+ + V+V LV
Sbjct 121 RGTYDAVGVKVILV 134
>gi|86741978|ref|YP_482378.1| PilT protein-like protein [Frankia sp. CcI3]
gi|86568840|gb|ABD12649.1| PilT protein-like [Frankia sp. CcI3]
Length=135
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/134 (42%), Positives = 69/134 (52%), Gaps = 4/134 (2%)
Query 2 IAPDTSVLVAGFATWHEGHEAAVRALN-RGVHLIAHAAVETYSVLTRLPPPHRIA-PVAV 59
IA DTSV V H H V+ R + L +A VETYSVLTR+P R++ P A
Sbjct 3 IAVDTSVAVPLLVRSHTHHADVVQWWGGRELALSGYALVETYSVLTRMPGDARLSGPDA- 61
Query 60 HAYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRA 119
A L D+ + L L R + L+ + GGA YD LV AK G L TRD RA
Sbjct 62 -ARLLDVRFTAPLTLSGPHARKVHATLSRVGIVGGAVYDGLVALAAKEHGLALATRDARA 120
Query 120 VETYERLRVEVELV 133
TY+ L V+V +V
Sbjct 121 RGTYDALGVKVIVV 134
>gi|306818933|ref|ZP_07452654.1| PilT protein family protein [Mobiluncus mulieris ATCC 35239]
gi|307700676|ref|ZP_07637701.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus
mulieris FB024-16]
gi|304648335|gb|EFM45639.1| PilT protein family protein [Mobiluncus mulieris ATCC 35239]
gi|307613671|gb|EFN92915.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus
mulieris FB024-16]
Length=139
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/127 (41%), Positives = 64/127 (51%), Gaps = 4/127 (3%)
Query 5 DTSVLVAGFATWHEGHEAAVR--ALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVHAY 62
DTSV V + H H VR A ++ + L HAA ETYSVLTRLP +AP V
Sbjct 8 DTSVAVPLLQSAHTAHRM-VRNWATDKDLCLSGHAAFETYSVLTRLPYDLAVAPPDV-LR 65
Query 63 LADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAVET 122
L + + LD+ S L V+GG+ YD LVG A G L TRD RA T
Sbjct 66 LFEAWFLPAVFLDSTSQAQALPELVAAGVSGGSVYDGLVGLAAVKHGLTLATRDARAAST 125
Query 123 YERLRVE 129
Y+ L V+
Sbjct 126 YQHLGVD 132
>gi|269977131|ref|ZP_06184104.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus
mulieris 28-1]
gi|269934434|gb|EEZ90995.1| toxin-antitoxin system, toxin component, PIN family [Mobiluncus
mulieris 28-1]
Length=139
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/127 (41%), Positives = 64/127 (51%), Gaps = 4/127 (3%)
Query 5 DTSVLVAGFATWHEGHEAAVR--ALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVHAY 62
DTSV V + H H VR A ++ + L HAA ETYSVLTRLP +AP V
Sbjct 8 DTSVAVPLLQSAHAAHRM-VRNWATDKDLCLSGHAAFETYSVLTRLPYDLAVAPPDV-LR 65
Query 63 LADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAVET 122
L + + LD+ S L V+GG+ YD LVG A G L TRD RA T
Sbjct 66 LFEAWFLPAVFLDSTSQAQALPELVAAGVSGGSVYDGLVGLAAVKHGLTLATRDARAAST 125
Query 123 YERLRVE 129
Y+ L V+
Sbjct 126 YQHLGVD 132
>gi|227875625|ref|ZP_03993764.1| PilT protein family protein [Mobiluncus mulieris ATCC 35243]
gi|227843810|gb|EEJ53980.1| PilT protein family protein [Mobiluncus mulieris ATCC 35243]
Length=139
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/127 (41%), Positives = 64/127 (51%), Gaps = 4/127 (3%)
Query 5 DTSVLVAGFATWHEGHEAAVR--ALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVHAY 62
DTSV V + H H VR A ++ + L HAA ETYSVLTRLP ++P V
Sbjct 8 DTSVAVPLLQSAHTAHRM-VRNWATDKDLCLSGHAAFETYSVLTRLPYDLAVSPPDV-LR 65
Query 63 LADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAVET 122
L + + LD+ S L V+GG+ YD LVG A G L TRD RA T
Sbjct 66 LFEAWFLPAVFLDSTSQAQALPELVAAGVSGGSVYDGLVGLAAVKHGLTLATRDARAAST 125
Query 123 YERLRVE 129
Y+ L V+
Sbjct 126 YQHLGVD 132
>gi|336119588|ref|YP_004574365.1| hypothetical protein MLP_39480 [Microlunatus phosphovorus NM-1]
gi|334687377|dbj|BAK36962.1| hypothetical protein MLP_39480 [Microlunatus phosphovorus NM-1]
Length=142
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/132 (39%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query 5 DTSVLVAGFATWHEGHEAAVRALNRG--VHLIAHAAVETYSVLTRLPPPHRIAP-VAVHA 61
DTS VA H H+A VR RG + L HA ET+SVLTRLP R+AP A+
Sbjct 11 DTSAAVALVDPDHVAHDA-VRDRVRGHRLGLAGHAEFETFSVLTRLPGAKRVAPEAAIRL 69
Query 62 YLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAVE 121
+ +L+ A L + V GGA YDALV A L++RD RA+
Sbjct 70 IQIGFPETRHLSRTAAEL--LLTEVGRRGVAGGAVYDALVAAAAGEHALLLVSRDARAMA 127
Query 122 TYERLRVEVELV 133
TY + ++ ELV
Sbjct 128 TYRAMGIDAELV 139
>gi|297567633|ref|YP_003686604.1| hypothetical protein Mesil_3282 [Meiothermus silvanus DSM 9946]
gi|296852082|gb|ADH65096.1| hypothetical protein Mesil_3282 [Meiothermus silvanus DSM 9946]
Length=147
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/124 (38%), Positives = 61/124 (50%), Gaps = 16/124 (12%)
Query 5 DTSVLVAGFATWHEGHEAAVRALNR---GVH---LIAHAAVETYSVLTRLP-----PPHR 53
DTS LVA F H H AA L + GVH + H E Y+VLTRLP PP
Sbjct 6 DTSSLVAAFVLSHPAHTAAWEWLEQTLEGVHDGAVATHTLAELYAVLTRLPLRPAIPP-- 63
Query 54 IAPVAVHAYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTA-KAAGAKL 112
PVA+ ++ +AL YR + L + ++ GGA YDAL+ A KA +L
Sbjct 64 --PVALQLIEENLRGFQTIALSVADYRAVLQRLEKLNLVGGAIYDALIAQAALKAKAERL 121
Query 113 LTRD 116
LT +
Sbjct 122 LTLN 125
>gi|158314179|ref|YP_001506687.1| PilT domain-containing protein [Frankia sp. EAN1pec]
gi|158109584|gb|ABW11781.1| PilT protein domain protein [Frankia sp. EAN1pec]
Length=135
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/133 (39%), Positives = 65/133 (49%), Gaps = 2/133 (1%)
Query 2 IAPDTSVLVAGFATWHEGHEAAVRAL-NRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVH 60
IA D SV V H HE VR R + L HA ETYSVLTR+P R++ +
Sbjct 3 IAVDASVAVPLLVRSHVQHEDVVRWWAGRELTLSGHALAETYSVLTRMPGDARLSG-SDA 61
Query 61 AYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAV 120
A L D + L L + + L + GGA YD LV A+ G L TRD RA
Sbjct 62 ARLLDARFTAPLTLTGPVAQSVHTTLGRLGIAGGAVYDGLVALAAREHGLALATRDARAR 121
Query 121 ETYERLRVEVELV 133
TY+ + V+V +V
Sbjct 122 GTYDAVGVKVVIV 134
>gi|299136185|ref|ZP_07029369.1| PilT protein domain protein [Acidobacterium sp. MP5ACTX8]
gi|298602309|gb|EFI58463.1| PilT protein domain protein [Acidobacterium sp. MP5ACTX8]
Length=141
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/114 (36%), Positives = 57/114 (50%), Gaps = 5/114 (4%)
Query 5 DTSVLVAGFATWHEGHEAAVR---ALNRGVHLI-AHAAVETYSVLTRLPPPHRIAPVAVH 60
DTSVLV F H HEA++R NR AH+ VE +S LTR+P HRI+P
Sbjct 6 DTSVLVPVFYGDHVHHEASLRLFIQFNRSTGCCGAHSLVEVFSTLTRMPGKHRISPEQAI 65
Query 61 AYLADITSS-NYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLL 113
++ I +ALD Y + A + GG+ YDA++ A A A ++
Sbjct 66 LFIGSIRERLTLIALDGDEYADTLEISAARGIVGGSIYDAMLAQCAIKAQAGII 119
>gi|240169440|ref|ZP_04748099.1| hypothetical protein MkanA1_09014 [Mycobacterium kansasii ATCC
12478]
Length=101
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/96 (39%), Positives = 50/96 (53%), Gaps = 3/96 (3%)
Query 39 VETYSVLTRLPPPHRIAPVA-VHAYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATY 97
+E SVLTRLPPP R++P A + + + S +L+ A L + + GGA Y
Sbjct 1 MELLSVLTRLPPPQRLSPAAALRLEVTNFPDSRFLS--ATDTADLLQEFVQAGLAGGALY 58
Query 98 DALVGFTAKAAGAKLLTRDLRAVETYERLRVEVELV 133
D LVG A+ L+T D RA TY L V EL+
Sbjct 59 DGLVGAAAREHKLPLITCDRRAEPTYRVLGVTYELL 94
>gi|334120341|ref|ZP_08494422.1| PilT protein domain protein [Microcoleus vaginatus FGP-2]
gi|333456688|gb|EGK85318.1| PilT protein domain protein [Microcoleus vaginatus FGP-2]
Length=144
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/116 (33%), Positives = 54/116 (47%), Gaps = 7/116 (6%)
Query 5 DTSVLVAGFATWHEGHEAA------VRALNRGVHLIAHAAVETYSVLTRLPPPHRIAP-V 57
DTSVL+A H H + VRA + H E YSVLTR+P RI P +
Sbjct 6 DTSVLIAALIEDHPSHSQSLSWLERVRAREIDGFVSTHTIAELYSVLTRIPRQPRINPGL 65
Query 58 AVHAYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLL 113
A + +++S N + L A Y+ + ++ GG YD L+ A AG +L
Sbjct 66 AQQLIVENLSSFNKVVLTAEDYQTTVSKMVSLNLPGGGIYDGLIAQAALKAGVDVL 121
>gi|239904705|ref|YP_002951443.1| hypothetical protein DMR_00660 [Desulfovibrio magneticus RS-1]
gi|239794568|dbj|BAH73557.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length=143
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/117 (36%), Positives = 59/117 (51%), Gaps = 8/117 (6%)
Query 5 DTSVLVAGFATWHEGHEAAVR---ALNRG---VHLIAHAAVETYSVLTRLPPPHRIAPVA 58
DTSVLVA H H+ A RG + + AH ETY+ LT P RI+PVA
Sbjct 6 DTSVLVAAMVKSHPMHQRAFPWYLKSRRGEIEMAVAAHGLAETYACLTTYPSRPRISPVA 65
Query 59 VHAYLAD--ITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLL 113
A L + + +S ++LD Y D +++ +GG+ YDAL A+ GA L+
Sbjct 66 AMALLRESIVRTSTVVSLDGRDYLEALDMVSDKGRSGGSVYDALHVIAAEKNGADLV 122
>gi|37521277|ref|NP_924654.1| hypothetical protein gll1708 [Gloeobacter violaceus PCC 7421]
gi|35212274|dbj|BAC89649.1| gll1708 [Gloeobacter violaceus PCC 7421]
Length=145
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/116 (32%), Positives = 54/116 (47%), Gaps = 7/116 (6%)
Query 5 DTSVLVAGFATWHEGHEAAVRALNRGVH------LIAHAAVETYSVLTRLPPPHRIAPVA 58
DTSVLV HE HE + R + E+Y+VLTRLP RI P+
Sbjct 6 DTSVLVPAIVHSHENHEICWSWVERARSGQVQGLMAVRTLAESYAVLTRLPLRPRIQPLL 65
Query 59 VHAYLADITS-SNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLL 113
+ +++ + L A YR + +AE + GG YDAL+ TA + + +L
Sbjct 66 AKRLILEVSEYVTTVPLTAGDYRSVVALMAELGLPGGGIYDALIAQTALQSQSDVL 121
>gi|86741255|ref|YP_481655.1| PilT protein-like protein [Frankia sp. CcI3]
gi|86568117|gb|ABD11926.1| PilT protein-like [Frankia sp. CcI3]
Length=133
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/123 (40%), Positives = 58/123 (48%), Gaps = 4/123 (3%)
Query 3 APDTSVLVAGFATWHEGHEAAVRALN-RGVHLIAHAAVETYSVLTRLPPPHRIA-PVAVH 60
A DTSV V H H VR + R + L HA ETYSVLTRLP R++ P A
Sbjct 4 AVDTSVAVPLVVRSHTHHVDVVRWWDGRELTLSGHALAETYSVLTRLPGDARLSGPDA-- 61
Query 61 AYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAV 120
A L D + AL + + L+ + GGA YD LV K L TRD RA
Sbjct 62 ARLLDARFTAPCALSGSHAQKVHTTLSRLGIAGGAVYDGLVALAVKEHDLALATRDARAR 121
Query 121 ETY 123
T+
Sbjct 122 GTW 124
>gi|153871622|ref|ZP_02000746.1| PilT-like protein [Beggiatoa sp. PS]
gi|152071909|gb|EDN69251.1| PilT-like protein [Beggiatoa sp. PS]
Length=146
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/107 (32%), Positives = 49/107 (46%), Gaps = 11/107 (10%)
Query 5 DTSVLVAGFATWHEGH-------EAAVRALNRGVHLIAHAAVETYSVLTRLP-PPHRIAP 56
DTS LVA H H + + L++GV + AH+ E Y++LT P P RI+P
Sbjct 7 DTSTLVAALVESHPKHTLVLPWLQRVKKGLDKGV-VSAHSLAELYNILTIFPAKPRRISP 65
Query 57 VAVHAYLAD--ITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALV 101
+ + + L Y + HL+E V GG YDAL+
Sbjct 66 QEAQQLIQQNLLEVFEIITLSEQDYMSVIKHLSESGVIGGVIYDALI 112
>gi|220908830|ref|YP_002484141.1| PilT protein domain-containing protein [Cyanothece sp. PCC 7425]
gi|219865441|gb|ACL45780.1| PilT protein domain protein [Cyanothece sp. PCC 7425]
Length=144
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/120 (30%), Positives = 54/120 (45%), Gaps = 8/120 (6%)
Query 5 DTSVLVAGFATWHEGHEAAVRAL------NRGVHLIAHAAVETYSVLTRLPPPHRIAPVA 58
DTSV++A H H + L +L H+ E YSV+TR+P RI+P
Sbjct 6 DTSVIIAALLPKHPSHASCFAQLLAAELNQIQGYLSTHSLAEVYSVMTRMPSQPRISPQE 65
Query 59 VHAYLAD-ITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTA-KAAGAKLLTRD 116
V L + + L+ YR + ++ GG +DAL+ A K + +LLT +
Sbjct 66 VQILLERCLQYLEVIPLEIADYRAAIALMTSLNLPGGGVFDALIAQAALKVSANQLLTLN 125
>gi|166368214|ref|YP_001660487.1| PilT protein-like protein [Microcystis aeruginosa NIES-843]
gi|166090587|dbj|BAG05295.1| PilT protein-like protein [Microcystis aeruginosa NIES-843]
Length=143
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/105 (33%), Positives = 54/105 (52%), Gaps = 8/105 (7%)
Query 5 DTSVLVAGFATWHEGHEAAV----RALNRGVH-LIA-HAAVETYSVLTRLPPPHRIAPVA 58
DTS L+A T H H A + +A ++ + LIA H E YSVLTR+P +I+P
Sbjct 6 DTSALIAALLTGHTHHSACLPFLLQAQSQQIQGLIATHTLAELYSVLTRIPKT-KISPAV 64
Query 59 VHAYLAD-ITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVG 102
+ D + + + ++L A Y D + + + GG +DAL+
Sbjct 65 AQNLIRDNLQTFDTVSLTAEDYTAAIDLMVQRQLPGGGIFDALIA 109
>gi|303246740|ref|ZP_07333017.1| PilT protein domain protein [Desulfovibrio fructosovorans JJ]
gi|302491757|gb|EFL51637.1| PilT protein domain protein [Desulfovibrio fructosovorans JJ]
Length=143
Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/117 (33%), Positives = 54/117 (47%), Gaps = 8/117 (6%)
Query 5 DTSVLVAGFATWHEGHEAAVR---ALNRG---VHLIAHAAVETYSVLTRLPPPHRIAPVA 58
DTSVLVA H H+ A RG + + AH ETY+ LT P RI+P +
Sbjct 6 DTSVLVAALVQSHPQHQRAFAWYLKCRRGELEMLVAAHGLAETYASLTVYPARPRISPRS 65
Query 59 VHAYL--ADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLL 113
L + + + + LD Y + +A GG+ YDAL A+ GA+L+
Sbjct 66 AAMLLQASVLGVCSVITLDCRDYVAAMESVARIGRGGGSIYDALHVVAARKGGAELV 122
>gi|86740896|ref|YP_481296.1| hypothetical protein Francci3_2198 [Frankia sp. CcI3]
gi|86567758|gb|ABD11567.1| hypothetical protein Francci3_2198 [Frankia sp. CcI3]
Length=70
Score = 37.7 bits (86), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 0/40 (0%)
Query 91 VTGGATYDALVGFTAKAAGAKLLTRDLRAVETYERLRVEV 130
+ GG YDAL+ FTA A L++ D RA TYE + + V
Sbjct 26 ILGGPAYDALIAFTAAEHQATLMSLDQRAAATYEAIGITV 65
>gi|341581387|ref|YP_004761879.1| hypothetical protein GQS_01500 [Thermococcus sp. 4557]
gi|340809045|gb|AEK72202.1| hypothetical protein GQS_01500 [Thermococcus sp. 4557]
Length=156
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/150 (31%), Positives = 57/150 (38%), Gaps = 31/150 (20%)
Query 5 DTSVLVAGFATWHEGHEAAVRALNRGVHLIAH------------------AAVETYSVLT 46
DTSVLV GF + VHL A A VET +VL
Sbjct 10 DTSVLVKGFLPPLRRKHDEIYYRQLSVHLKAKELLKKAQNGEFILHEPVIALVETSTVLW 69
Query 47 RLPPPHRIAPVAVHAYLADIT---SSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGF 103
RL RI V V +L + S YL DA L TG + +D L
Sbjct 70 RLSKSERIVDVGVE-FLETYSIFYSDVYLMEDAM-------KLGRE--TGASGFDVLFLA 119
Query 104 TAKAAGAKLLTRDLRAVETYERLRVEVELV 133
AK AKL+T D + E + +E EL+
Sbjct 120 CAKKVNAKLITDDKKMYEKAVKAGIEAELL 149
>gi|330821084|ref|YP_004349946.1| Threonine dehydrogenase-like Zn-dependent dehydrogenase [Burkholderia
gladioli BSR3]
gi|327373079|gb|AEA64434.1| Threonine dehydrogenase-like Zn-dependent dehydrogenase [Burkholderia
gladioli BSR3]
Length=399
Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/111 (28%), Positives = 52/111 (47%), Gaps = 14/111 (12%)
Query 14 ATWHEGHEAAVRALNRGVHLIAHAAVETYSVLTRLPPPHRIAPVAVHAYLADITSSNYLA 73
A W G+ + +AL V ++A A T ++ PP HR+ P+ A ++T L
Sbjct 290 ANWIPGNGPS-QALQAAVQMVAKAG--TIGIIGVYPPQHRVFPIG-EAMNRNLT----LK 341
Query 74 LDACSYRGLTDHLAEHDVTGGATYDALVGFTAKAAGAKLLTRDLRAVETYE 124
+ C++R + L E + G T+D L T + + LT + A T++
Sbjct 342 MGNCNHRTIAPRLVE--LVAGGTFDPLSVLTQR----EPLTSAIEAYRTFD 386
>gi|269219398|ref|ZP_06163252.1| conserved hypothetical protein [Actinomyces sp. oral taxon 848
str. F0332]
gi|269211191|gb|EEZ77531.1| conserved hypothetical protein [Actinomyces sp. oral taxon 848
str. F0332]
Length=192
Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/63 (37%), Positives = 34/63 (54%), Gaps = 3/63 (4%)
Query 45 LTRLPPPHRIAPVAVHAYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALVGFT 104
++++PPP +IAP AV A A+I S +LD SYRG + +D G +D +
Sbjct 28 VSQIPPPAKIAPWAV-ALQAEINDS--ASLDPDSYRGNARFVLLYDPEGQPAWDGTIRIV 84
Query 105 AKA 107
A A
Sbjct 85 AYA 87
>gi|229825102|ref|ZP_04451171.1| hypothetical protein GCWU000182_00452 [Abiotrophia defectiva
ATCC 49176]
gi|229790474|gb|EEP26588.1| hypothetical protein GCWU000182_00452 [Abiotrophia defectiva
ATCC 49176]
Length=1023
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 16/47 (35%), Positives = 25/47 (54%), Gaps = 1/47 (2%)
Query 4 PDTSVLVAGFATWHEGHEAAVRALNRGVHLIAHAAVETYSVLTRLPP 50
PD S L+AGF+ W H V+ +G+ +IA A + + +L P
Sbjct 73 PDAS-LIAGFSAWKNSHGRTVKKGEKGIRIIAPAPFKVRQKMEKLDP 118
>gi|331003751|ref|ZP_08327245.1| hypothetical protein HMPREF0491_02107 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330412134|gb|EGG91529.1| hypothetical protein HMPREF0491_02107 [Lachnospiraceae oral taxon
107 str. F0167]
Length=1023
Score = 35.0 bits (79), Expect = 3.9, Method: Composition-based stats.
Identities = 16/47 (35%), Positives = 25/47 (54%), Gaps = 1/47 (2%)
Query 4 PDTSVLVAGFATWHEGHEAAVRALNRGVHLIAHAAVETYSVLTRLPP 50
PD S L+AGF+ W H V+ +G+ +IA A + + +L P
Sbjct 73 PDAS-LIAGFSAWKNSHGRTVKKGGKGIRIIAPAPFKVRQKMEKLDP 118
>gi|325283833|ref|YP_004256374.1| PilT protein domain-containing protein [Deinococcus proteolyticus
MRP]
gi|324315642|gb|ADY26757.1| PilT protein domain protein [Deinococcus proteolyticus MRP]
Length=139
Score = 35.0 bits (79), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 30/103 (30%), Positives = 45/103 (44%), Gaps = 10/103 (9%)
Query 5 DTSVLVAGFATWHEGHEAAVRALNRG--VHLIAHAAVETYSVLTRLP----PPHRIAPVA 58
DTSV+VA H H A+R + + + AH+ E Y V+ P P + P+
Sbjct 7 DTSVIVASIYPEHPQHAWALRQRQKAEALAMSAHSLAEVYKVIKGHPRIKLSPSQATPLL 66
Query 59 VHAYLADITSSNYLALDACSYRGLTDHLAEHDVTGGATYDALV 101
LAD + L SY A+H ++G +DAL+
Sbjct 67 --RALAD--QVRVIPLTEASYHAALTRCAKHQLSGSVIFDALI 105
Lambda K H
0.320 0.133 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129924441710
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40