BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2602
Length=146
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609739|ref|NP_217118.1| hypothetical protein Rv2602 [Mycoba... 297 3e-79
gi|289448253|ref|ZP_06437997.1| toxin [Mycobacterium tuberculosi... 295 1e-78
gi|87123268|ref|ZP_01079119.1| hypothetical protein RS9917_05395... 114 5e-24
gi|33864607|ref|NP_896166.1| hypothetical protein SYNW0071 [Syne... 107 7e-22
gi|322433890|ref|YP_004216102.1| hypothetical protein AciX9_0248... 104 5e-21
gi|94263619|ref|ZP_01287429.1| Protein of unknown function Mtu_f... 103 1e-20
gi|87300559|ref|ZP_01083401.1| hypothetical protein WH5701_03905... 99.4 2e-19
gi|320108460|ref|YP_004184050.1| PIN domain-containing protein f... 87.8 5e-16
gi|333967818|gb|AEG34582.1| PIN domain protein family protein [T... 81.6 3e-14
gi|254430307|ref|ZP_05044010.1| hypothetical protein CPCC7001_19... 66.2 2e-09
gi|87123096|ref|ZP_01078947.1| hypothetical protein RS9917_04535... 64.3 5e-09
gi|33865109|ref|NP_896668.1| hypothetical protein SYNW0573 [Syne... 59.3 2e-07
gi|116073603|ref|ZP_01470865.1| hypothetical protein RS9916_3417... 51.6 4e-05
gi|297623633|ref|YP_003705067.1| PIN domain-containing protein [... 46.6 0.001
gi|326772971|ref|ZP_08232255.1| toxin-antitoxin system, toxin co... 41.2 0.050
gi|340358885|ref|ZP_08681388.1| PIN family toxin-antitoxin syste... 41.2 0.051
gi|15608382|ref|NP_215758.1| hypothetical protein Rv1242 [Mycoba... 40.4 0.090
gi|240168912|ref|ZP_04747571.1| hypothetical protein MkanA1_0634... 40.0 0.12
gi|289573902|ref|ZP_06454129.1| toxin [Mycobacterium tuberculosi... 38.9 0.22
gi|116624725|ref|YP_826881.1| PilT domain-containing protein [Ca... 38.5 0.31
gi|240169388|ref|ZP_04748047.1| hypothetical protein MkanA1_0874... 38.5 0.34
gi|308270136|emb|CBX26748.1| hypothetical protein N47_A07770 [un... 38.1 0.38
gi|254420497|ref|ZP_05034221.1| Mycobacterium tuberculosis PIN d... 38.1 0.41
gi|336179654|ref|YP_004585029.1| PIN domain-containing protein f... 37.4 0.69
gi|113953974|ref|YP_729372.1| hypothetical protein sync_0135 [Sy... 37.4 0.73
gi|323692181|ref|ZP_08106424.1| hypothetical protein HMPREF9475_... 37.0 0.90
gi|114331350|ref|YP_747572.1| PilT domain-containing protein [Ni... 37.0 1.0
gi|330818818|ref|YP_004351035.1| PilT domain-containing protein ... 36.6 1.2
gi|15607757|ref|NP_215131.1| hypothetical protein Rv0617 [Mycoba... 36.6 1.3
gi|87123102|ref|ZP_01078953.1| hypothetical protein RS9917_04565... 36.2 1.8
gi|145221522|ref|YP_001132200.1| PilT domain-containing protein ... 35.4 3.2
gi|320109069|ref|YP_004184659.1| PIN domain-containing protein f... 35.0 3.3
gi|554598|gb|AAA42570.1| src-p68 phosphoprotein [Rous sarcoma vi... 35.0 3.5
gi|317967919|ref|ZP_07969309.1| hypothetical protein SCB02_00127... 35.0 4.0
gi|297623624|ref|YP_003705058.1| PIN domain-containing protein [... 34.7 4.8
gi|121636671|ref|YP_976894.1| hypothetical protein BCG_0799 [Myc... 34.7 4.8
gi|15609667|ref|NP_217046.1| hypothetical protein Rv2530c [Mycob... 34.3 5.8
gi|336115788|ref|YP_004570554.1| hypothetical protein MLP_01370 ... 34.3 5.9
gi|160898241|ref|YP_001563823.1| PilT domain-containing protein ... 34.3 6.1
gi|15607889|ref|NP_215263.1| hypothetical protein Rv0749 [Mycoba... 34.3 6.2
gi|88811999|ref|ZP_01127252.1| hypothetical protein NB231_06401 ... 33.9 8.1
gi|306774366|ref|ZP_07412703.1| toxin [Mycobacterium tuberculosi... 33.9 9.2
>gi|15609739|ref|NP_217118.1| hypothetical protein Rv2602 [Mycobacterium tuberculosis H37Rv]
gi|15842142|ref|NP_337179.1| hypothetical protein MT2677 [Mycobacterium tuberculosis CDC1551]
gi|31793787|ref|NP_856280.1| hypothetical protein Mb2634 [Mycobacterium bovis AF2122/97]
79 more sequence titles
Length=146
Score = 297 bits (761), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 146/146 (100%), Positives = 146/146 (100%), Gaps = 0/146 (0%)
Query 1 MLLCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYG 60
MLLCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYG
Sbjct 1 MLLCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYG 60
Query 61 SPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFAL 120
SPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFAL
Sbjct 61 SPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFAL 120
Query 121 TGGFELVTTDTAFTQYGGIELRLLAK 146
TGGFELVTTDTAFTQYGGIELRLLAK
Sbjct 121 TGGFELVTTDTAFTQYGGIELRLLAK 146
>gi|289448253|ref|ZP_06437997.1| toxin [Mycobacterium tuberculosis CPHL_A]
gi|289421211|gb|EFD18412.1| toxin [Mycobacterium tuberculosis CPHL_A]
Length=146
Score = 295 bits (756), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 145/146 (99%), Positives = 145/146 (99%), Gaps = 0/146 (0%)
Query 1 MLLCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYG 60
MLLCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYG
Sbjct 1 MLLCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYG 60
Query 61 SPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFAL 120
SPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFAL
Sbjct 61 SPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFAL 120
Query 121 TGGFELVTTDTAFTQYGGIELRLLAK 146
TGGFELVTTDTAFTQY GIELRLLAK
Sbjct 121 TGGFELVTTDTAFTQYSGIELRLLAK 146
>gi|87123268|ref|ZP_01079119.1| hypothetical protein RS9917_05395 [Synechococcus sp. RS9917]
gi|86168988|gb|EAQ70244.1| hypothetical protein RS9917_05395 [Synechococcus sp. RS9917]
Length=148
Score = 114 bits (284), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 67/144 (47%), Positives = 89/144 (62%), Gaps = 7/144 (4%)
Query 3 LCDTNIWLALALSGHV-HHRASRAWLDTINAPGVIHF--CRATQQSLLRLLTNRTVLGAY 59
L DTN+WLA++ H H +A RA+ DT P H+ CRATQQS LRL+ + AY
Sbjct 5 LIDTNVWLAISFDTHPGHTQARRAFQDT---PSSDHWLWCRATQQSYLRLMATPALHRAY 61
Query 60 GSPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFA 119
GSPPL+NR+A A+ L RI++A EP G+ W A Q PAPK+WMDAYLAA A
Sbjct 62 GSPPLSNRDARASLEILLAHPRILIAD-EPAGVSELWLQLADHQRPAPKLWMDAYLAAVA 120
Query 120 LTGGFELVTTDTAFTQYGGIELRL 143
+ GG+ L++ D F ++ L+L
Sbjct 121 IQGGWRLLSLDQDFERFCSAGLQL 144
>gi|33864607|ref|NP_896166.1| hypothetical protein SYNW0071 [Synechococcus sp. WH 8102]
gi|33632130|emb|CAE06586.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
Length=148
Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 62/143 (44%), Positives = 85/143 (60%), Gaps = 5/143 (3%)
Query 3 LCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHF--CRATQQSLLRLLTNRTVLGAYG 60
L DTN+WLA++ H H +R ++PG H+ CRATQQS LRL+ + AYG
Sbjct 5 LIDTNVWLAISFDAHPGHALARQAFQ--DSPGSDHWLWCRATQQSYLRLMATPALHSAYG 62
Query 61 SPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFAL 120
SP L+NR+A A+ L RI++A EP + W A Q PAPK+WMDAYLAA A+
Sbjct 63 SPALSNRDARASMEILLAHPRILVAD-EPAEVSDLWLQLADHQRPAPKLWMDAYLAAVAI 121
Query 121 TGGFELVTTDTAFTQYGGIELRL 143
GG+ L++ D F ++ L+L
Sbjct 122 QGGWRLLSFDRDFERFCNAGLQL 144
>gi|322433890|ref|YP_004216102.1| hypothetical protein AciX9_0248 [Acidobacterium sp. MP5ACTX9]
gi|321161617|gb|ADW67322.1| hypothetical protein AciX9_0248 [Acidobacterium sp. MP5ACTX9]
Length=146
Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/141 (41%), Positives = 77/141 (55%), Gaps = 6/141 (4%)
Query 5 DTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYGSPPL 64
D N+W+ALA H HHR + W+D++ ++FCR +Q LLR LT GA G L
Sbjct 10 DVNVWVALAHERHTHHRVASEWIDSVGPRSALYFCRISQLGLLRTLTTG---GAMGGDVL 66
Query 65 TNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFALTGGF 124
T +AW Y +FL+D R EP G+E ++R R + K+W DAY A FA G
Sbjct 67 TQAQAWMTYDSFLEDSRNRFMD-EPAGIEQEFRERTFRDEASNKLWADAYFATFAQLAGL 125
Query 125 ELVTTDTAFTQY--GGIELRL 143
+LVT D A + G + LRL
Sbjct 126 KLVTFDKALAKSVPGALLLRL 146
>gi|94263619|ref|ZP_01287429.1| Protein of unknown function Mtu_fam_191 [delta proteobacterium
MLMS-1]
gi|93456039|gb|EAT06190.1| Protein of unknown function Mtu_fam_191 [delta proteobacterium
MLMS-1]
Length=149
Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/144 (41%), Positives = 79/144 (55%), Gaps = 3/144 (2%)
Query 3 LCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYGSP 62
L DTN+W+A + H H ++ L FCR+TQQS LRL + +L AYG+
Sbjct 5 LVDTNVWIAAIFTSHPFHNPAQQSLQQATPAVPTVFCRSTQQSFLRLASTPILLKAYGAE 64
Query 63 PLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFALTG 122
LTNR+A A A ++ + EP GL WRA A + +PKVWMDAYLAAFA+
Sbjct 65 GLTNRDALVALDALQALPQVCIRD-EPPGLSTLWRAMASMDTASPKVWMDAYLAAFAIGS 123
Query 123 GFELVTTDTAFTQY--GGIELRLL 144
LVT D F + G++L L+
Sbjct 124 ALRLVTLDHDFKNFVPQGLDLVLI 147
>gi|87300559|ref|ZP_01083401.1| hypothetical protein WH5701_03905 [Synechococcus sp. WH 5701]
gi|87284430|gb|EAQ76382.1| hypothetical protein WH5701_03905 [Synechococcus sp. WH 5701]
Length=155
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/134 (44%), Positives = 74/134 (56%), Gaps = 1/134 (0%)
Query 3 LCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYGSP 62
L D N+WLA A H HR ++A L + CRATQQS LRL + + AY S
Sbjct 5 LLDVNVWLAAAFEAHPAHRTAQAVLLEATPATPVLLCRATQQSFLRLASTPAIFTAYKSA 64
Query 63 PLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFALTG 122
+TN +A AA +F ++ L EP G+E+ W A APK WMDAYLAAFA+TG
Sbjct 65 AITNLDALAALQSFQALPQVDLMD-EPIGIESLWWRLAGLAEAAPKRWMDAYLAAFAITG 123
Query 123 GFELVTTDTAFTQY 136
+VT D F Q+
Sbjct 124 STRMVTLDQDFRQF 137
>gi|320108460|ref|YP_004184050.1| PIN domain-containing protein family protein [Terriglobus saanensis
SP1PR4]
gi|319926981|gb|ADV84056.1| PIN domain protein family protein [Terriglobus saanensis SP1PR4]
Length=142
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/136 (40%), Positives = 75/136 (56%), Gaps = 13/136 (9%)
Query 2 LLCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYGS 61
L D N+WLAL H H R ++ W T+ + ++ FCR TQ LR+LTN+T + A
Sbjct 5 LFPDVNVWLALTGETHEHSRPAQIWYGTLISETLL-FCRMTQLGFLRILTNKTAMQA--- 60
Query 62 PPLTNREAWAAYAAFLDDDRIVLAGA----EPDGLEAQWRAFAVRQSPAPKVWMDAYLAA 117
TN +A Y ++ D GA EPD +EA + + A + +PK+W DAYL+A
Sbjct 61 DVKTNLQALRIYQQWIQTD-----GARYREEPDNMEAAFASIASTTASSPKLWNDAYLSA 115
Query 118 FALTGGFELVTTDTAF 133
FA+T G LVT D A
Sbjct 116 FAVTAGLRLVTFDRAL 131
>gi|333967818|gb|AEG34582.1| PIN domain protein family protein [Thermus thermophilus SG0.5JP17-16]
Length=138
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/141 (41%), Positives = 75/141 (54%), Gaps = 8/141 (5%)
Query 1 MLLCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYG 60
M L D N+W AL + H H +RA+ + + P ++ R T LLRLLTN A
Sbjct 1 MDLLDLNVWFALLVPEHPFHPRARAYWERASDPFLV---RVTALGLLRLLTNAK---AMD 54
Query 61 SPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFAL 120
PL REAW Y + L EP+GL+ + A VR +P++W DAYLAAFAL
Sbjct 55 GKPLEVREAWRVYWELRLSSGVPLL-EEPEGLD-EALADLVRGGFSPRLWTDAYLAAFAL 112
Query 121 TGGFELVTTDTAFTQYGGIEL 141
GG LVT D F + G+E+
Sbjct 113 AGGHRLVTFDQDFLGFPGLEV 133
>gi|254430307|ref|ZP_05044010.1| hypothetical protein CPCC7001_197 [Cyanobium sp. PCC 7001]
gi|197624760|gb|EDY37319.1| hypothetical protein CPCC7001_197 [Cyanobium sp. PCC 7001]
Length=144
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/138 (36%), Positives = 73/138 (53%), Gaps = 5/138 (3%)
Query 3 LCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYGSP 62
L D N+WLALA S H+HHR + + + + A V+ FC T L+RL++ ++G
Sbjct 7 LPDLNVWLALASSQHIHHRQALHYWEQLAAEQVL-FCTVTALGLVRLVSQPRLMGDAVK- 64
Query 63 PLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFALTG 122
EA AAF + LA AE DG + R + P P++ DA+LAA A+T
Sbjct 65 --NAAEASELLAAFCRQPGVALAPAEHDGWDVFHRLMRKGELP-PRLCTDAHLAALAMTH 121
Query 123 GFELVTTDTAFTQYGGIE 140
G+ LV+ D F ++ G+
Sbjct 122 GWRLVSFDRDFKRFEGLH 139
>gi|87123096|ref|ZP_01078947.1| hypothetical protein RS9917_04535 [Synechococcus sp. RS9917]
gi|86168816|gb|EAQ70072.1| hypothetical protein RS9917_04535 [Synechococcus sp. RS9917]
Length=144
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/143 (34%), Positives = 75/143 (53%), Gaps = 5/143 (3%)
Query 3 LCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYGSP 62
L D N+WLALA + H HH + A+ + A V+ FC T L+RL++ V+GA
Sbjct 7 LPDLNVWLALATADHKHHDHAVAYWEGEAAEQVL-FCTVTALGLVRLVSQAKVMGA---A 62
Query 63 PLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFALTG 122
+ R+A AF + + +A +G + + A PA ++ D YLAA A++
Sbjct 63 VKSARDASELLRAFCQLEGVGMATPTSNGWDVFHQLMAGGNHPA-RLCTDTYLAALAISN 121
Query 123 GFELVTTDTAFTQYGGIELRLLA 145
G+ LV+ D F ++ G+E LLA
Sbjct 122 GWRLVSFDRDFDRFAGLERLLLA 144
>gi|33865109|ref|NP_896668.1| hypothetical protein SYNW0573 [Synechococcus sp. WH 8102]
gi|33638793|emb|CAE07088.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
Length=144
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/142 (33%), Positives = 68/142 (48%), Gaps = 11/142 (7%)
Query 3 LCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYGSP 62
L D N+WLALA H HH ++ + + + V+ FC T L+RL+ V+G
Sbjct 7 LPDLNVWLALASPNHKHHSSAVQYWEKQASQQVL-FCTTTALGLVRLVMQPKVMGGAALM 65
Query 63 PLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFA--VRQSP-APKVWMDAYLAAFA 119
P +A A FL + A DG W F +RQ+ P++ DA+LAA A
Sbjct 66 P---ADASALLETFLQQPGVSHAQPTSDG----WDVFHLLMRQADLTPRLCTDAHLAALA 118
Query 120 LTGGFELVTTDTAFTQYGGIEL 141
+T + LV+ D F + G+ L
Sbjct 119 ITNQWRLVSFDQDFQLFSGLNL 140
>gi|116073603|ref|ZP_01470865.1| hypothetical protein RS9916_34172 [Synechococcus sp. RS9916]
gi|116068908|gb|EAU74660.1| hypothetical protein RS9916_34172 [Synechococcus sp. RS9916]
Length=144
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/142 (31%), Positives = 69/142 (49%), Gaps = 11/142 (7%)
Query 3 LCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYGSP 62
L D N+WLAL H HH ++ A+ + + V+ FC T L+RL+ V+G
Sbjct 7 LPDLNVWLALVSPTHQHHSSAVAYWEEQASQQVL-FCTVTALGLVRLVMQPKVMGDAAL- 64
Query 63 PLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFA--VRQSP-APKVWMDAYLAAFA 119
T A A F+ + A +G W F +RQ+ +P++ DA+LAA A
Sbjct 65 --TAAAASALLDQFVQQPGVSYAQPSSEG----WDVFHGLMRQAELSPRLCTDAHLAALA 118
Query 120 LTGGFELVTTDTAFTQYGGIEL 141
+T + LV+ D F + G++L
Sbjct 119 ITNQWRLVSFDRDFQLFPGLDL 140
>gi|297623633|ref|YP_003705067.1| PIN domain-containing protein [Truepera radiovictrix DSM 17093]
gi|297164813|gb|ADI14524.1| PIN domain protein family protein [Truepera radiovictrix DSM
17093]
Length=145
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/143 (30%), Positives = 63/143 (45%), Gaps = 6/143 (4%)
Query 1 MLLCDTNIWLALALSGHVHHRASRAWLDTINAPGV-IHFCRATQQSLLRLLTNRTVLGAY 59
M+L D N+ + + G H A+ AWLD + G + + + LRL TN V
Sbjct 1 MILIDANLLIYAHVMGSPQHHAAHAWLDAQLSAGYRVGLPWPSLLAFLRLTTNPRVFER- 59
Query 60 GSPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFA 119
PLT EAWA A+L + L + + R + + DA+LAA A
Sbjct 60 ---PLTAAEAWAQVEAWLSVPSVWLPTPTAEHPKLL-RDLVTQTGATANLIPDAHLAALA 115
Query 120 LTGGFELVTTDTAFTQYGGIELR 142
L G L +TD F ++ ++ R
Sbjct 116 LEHGLTLCSTDGDFGRFPRLKWR 138
>gi|326772971|ref|ZP_08232255.1| toxin-antitoxin system, toxin component, PIN family [Actinomyces
viscosus C505]
gi|326637603|gb|EGE38505.1| toxin-antitoxin system, toxin component, PIN family [Actinomyces
viscosus C505]
Length=146
Score = 41.2 bits (95), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 28/55 (51%), Gaps = 3/55 (5%)
Query 3 LCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLG 57
L D N+ +AL+L H HH AW D ++ C TQ + LRLL N V G
Sbjct 9 LLDVNVLVALSLPNHAHHEVVSAWFDGVDQWAT---CSITQAAYLRLLMNPRVTG 60
>gi|340358885|ref|ZP_08681388.1| PIN family toxin-antitoxin system [Actinomyces sp. oral taxon
448 str. F0400]
gi|339885631|gb|EGQ75340.1| PIN family toxin-antitoxin system [Actinomyces sp. oral taxon
448 str. F0400]
Length=148
Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/55 (39%), Positives = 30/55 (55%), Gaps = 3/55 (5%)
Query 3 LCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLG 57
L D N+ LAL+L+ H HHR + +W + + A C T+ + RLL N V G
Sbjct 10 LLDVNVMLALSLANHAHHRVATSWFEDVGAWAT---CPITESAYCRLLLNSHVTG 61
>gi|15608382|ref|NP_215758.1| hypothetical protein Rv1242 [Mycobacterium tuberculosis H37Rv]
gi|15840687|ref|NP_335724.1| hypothetical protein MT1280 [Mycobacterium tuberculosis CDC1551]
gi|31792435|ref|NP_854928.1| hypothetical protein Mb1274 [Mycobacterium bovis AF2122/97]
79 more sequence titles
Length=143
Score = 40.4 bits (93), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 37/141 (27%), Positives = 61/141 (44%), Gaps = 6/141 (4%)
Query 1 MLLCDTNIWLALALSGHVHHRASRAW-LDTINAPGVIHFCRATQQSLLRLLTNRTVLGAY 59
M++ D N+ L ++G HR + AW DT+N I LR+ T+ VL A
Sbjct 1 MIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAA- 59
Query 60 GSPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFA 119
PL +A A +L + L A P L+ + A + D LAA+
Sbjct 60 ---PLPTADAIAYVREWLSQPNVDLLTAGPRHLDIAL-GLLDKLGTASHLTTDVQLAAYG 115
Query 120 LTGGFELVTTDTAFTQYGGIE 140
+ E+ ++DT F ++ ++
Sbjct 116 IEYDAEIHSSDTDFARFADLK 136
>gi|240168912|ref|ZP_04747571.1| hypothetical protein MkanA1_06345 [Mycobacterium kansasii ATCC
12478]
Length=143
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/140 (26%), Positives = 62/140 (45%), Gaps = 6/140 (4%)
Query 1 MLLCDTNIWLALALSGHVHHRASRAW-LDTINAPGVIHFCRATQQSLLRLLTNRTVLGAY 59
M++ D N+ L ++G HR + AW DT+N+ I LR++TN +L
Sbjct 1 MIIPDVNLLLYAVITGFPQHRRAYAWWHDTVNSQERIGLTYPAVFGFLRIVTNARIL--- 57
Query 60 GSPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFA 119
+ PL+ EA A +L + L L+ + A + D LAA+A
Sbjct 58 -TEPLSATEAVAYVRDWLTQPNVDLLIPSARHLDLAL-GLLEQLGTASNLTTDVQLAAYA 115
Query 120 LTGGFELVTTDTAFTQYGGI 139
+ E+ ++D F ++ G+
Sbjct 116 IEHNAEMHSSDADFARFAGL 135
>gi|289573902|ref|ZP_06454129.1| toxin [Mycobacterium tuberculosis K85]
gi|289538333|gb|EFD42911.1| toxin [Mycobacterium tuberculosis K85]
Length=143
Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 37/141 (27%), Positives = 60/141 (43%), Gaps = 6/141 (4%)
Query 1 MLLCDTNIWLALALSGHVHHRASRAW-LDTINAPGVIHFCRATQQSLLRLLTNRTVLGAY 59
M++ D N+ L ++G HR + AW DT+N I LR+ T+ VL A
Sbjct 1 MIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAA- 59
Query 60 GSPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFA 119
PL +A A +L + L A P L+ + A D LAA+
Sbjct 60 ---PLPTADAIAYVREWLSQPNVDLLTAGPRHLDIAL-GLLDKLGTASHRTTDVQLAAYG 115
Query 120 LTGGFELVTTDTAFTQYGGIE 140
+ E+ ++DT F ++ ++
Sbjct 116 IEYDAEIHSSDTDFARFADLK 136
>gi|116624725|ref|YP_826881.1| PilT domain-containing protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116227887|gb|ABJ86596.1| PIN domain family protein [Candidatus Solibacter usitatus Ellin6076]
Length=142
Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/141 (26%), Positives = 64/141 (46%), Gaps = 6/141 (4%)
Query 1 MLLCDTNIWLALALSGHVHHRASRAWLD-TINAPGVIHFCRATQQSLLRLLTNRTVLGAY 59
M L D NI L H+++R WL+ T++ + F + LRL T +
Sbjct 1 MKLLDANILLYAVNKDAPLHQSARQWLEKTLSGDEPLGFSWNVILAFLRLTTRPGLF--- 57
Query 60 GSPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFA 119
PL+ +A+ A++L + ++ A P LE R + A + DA+L A A
Sbjct 58 -RKPLSPDQAFDLVASWLAEPAAIIVHAGPRHLEIVHRLIKPLGT-AGNLTSDAHLGALA 115
Query 120 LTGGFELVTTDTAFTQYGGIE 140
+ +L + D+ F ++ G++
Sbjct 116 IEQNAQLCSCDSDFARFSGVD 136
>gi|240169388|ref|ZP_04748047.1| hypothetical protein MkanA1_08748 [Mycobacterium kansasii ATCC
12478]
Length=133
Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 41/137 (30%), Positives = 54/137 (40%), Gaps = 24/137 (17%)
Query 3 LCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYGSP 62
L D+N+ +AL ++ HVHH + AWL + C TQ SL+R L RT G P
Sbjct 4 LLDSNVLIALVVAEHVHHDVAAAWLSARDNG--FATCPITQGSLVRFLM-RT-----GQP 55
Query 63 PLTNREAWAAYAAFLDD----DRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAF 118
RE A D + A E G+ RQ DAYLA
Sbjct 56 AAVAREVVGAVETAKRHEFWPDSVSFADVEIGGVVGH------RQV------TDAYLAQL 103
Query 119 ALTGGFELVTTDTAFTQ 135
A + +L T D+
Sbjct 104 ARSRNGQLATLDSGLAH 120
>gi|308270136|emb|CBX26748.1| hypothetical protein N47_A07770 [uncultured Desulfobacterium
sp.]
Length=143
Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 39/147 (27%), Positives = 65/147 (45%), Gaps = 18/147 (12%)
Query 1 MLLCDTNIWLALALS-GHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAY 59
M+L D NI L S +H +A W D ++ + C + +R+ TN V
Sbjct 1 MILVDANILLYAEDSLSPLHQQARLWWDDQLSKSEPVCLCWPVLSAFIRIGTNPRVFEH- 59
Query 60 GSPPLTNREAWAAYAAFLDDD--RIVLAGAEPDGLEAQWRAFAVR----QSPAPKVWMDA 113
PL +A ++LD R++ E W F + Q+ A V DA
Sbjct 60 ---PLPLEQALTRVQSWLDQPCTRVI------QPTEQHWAVFMMMLKGGQAVANLV-TDA 109
Query 114 YLAAFALTGGFELVTTDTAFTQYGGIE 140
+LAA A+ G +L +TD+ F+++ ++
Sbjct 110 HLAALAIENGCDLASTDSDFSRFPKLK 136
>gi|254420497|ref|ZP_05034221.1| Mycobacterium tuberculosis PIN domain family [Brevundimonas sp.
BAL3]
gi|196186674|gb|EDX81650.1| Mycobacterium tuberculosis PIN domain family [Brevundimonas sp.
BAL3]
Length=145
Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 39/131 (30%), Positives = 51/131 (39%), Gaps = 13/131 (9%)
Query 3 LCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYGSP 62
L D N+ +AL HV H + W A G C T+ L+R++ N G P
Sbjct 4 LLDVNVLIALVDPRHVFHDTANGWFQR-EAAGSWATCPITENGLVRIVGNSRYRNPVGPP 62
Query 63 PLTNREAWAAYAAFLDDDRIVLAGAE--PDGLE-AQWRAFAVRQSPAPKVWMDAYLAAFA 119
R L D +AG PD + A R F P+ DAYL A A
Sbjct 63 SEIVR-----ILELLRD----MAGHVFWPDAISLADDRLFDPSALTTPEQITDAYLLALA 113
Query 120 LTGGFELVTTD 130
++ G L T D
Sbjct 114 VSNGGRLATLD 124
>gi|336179654|ref|YP_004585029.1| PIN domain-containing protein family protein [Frankia symbiont
of Datisca glomerata]
gi|334860634|gb|AEH11108.1| PIN domain protein family protein [Frankia symbiont of Datisca
glomerata]
Length=131
Score = 37.4 bits (85), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/48 (42%), Positives = 27/48 (57%), Gaps = 2/48 (4%)
Query 3 LCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLL 50
L D N+ + L ++ HVHH A+ AWL G C T+ SL+RLL
Sbjct 4 LLDANVLITLIVTDHVHHDAAEAWL--AGTAGRFATCPITEGSLVRLL 49
>gi|113953974|ref|YP_729372.1| hypothetical protein sync_0135 [Synechococcus sp. CC9311]
gi|113881325|gb|ABI46283.1| Mycobacterium tuberculosis PIN domain family subfamily [Synechococcus
sp. CC9311]
Length=148
Score = 37.4 bits (85), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/60 (37%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query 3 LCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYGSP 62
L D N+ +AL HVHH S W G C TQ +LLR+L N + G P
Sbjct 7 LLDVNVLIALIDPQHVHHEPSHRWFQAHGGDGWA-TCPLTQNALLRILGNPRYPNSPGGP 65
>gi|323692181|ref|ZP_08106424.1| hypothetical protein HMPREF9475_01287 [Clostridium symbiosum
WAL-14673]
gi|323503755|gb|EGB19574.1| hypothetical protein HMPREF9475_01287 [Clostridium symbiosum
WAL-14673]
Length=641
Score = 37.0 bits (84), Expect = 0.90, Method: Composition-based stats.
Identities = 28/87 (33%), Positives = 42/87 (49%), Gaps = 6/87 (6%)
Query 26 WLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYGSPPLTNREA--WAAYAAFLDDDRIV 83
+++ I A I C Q + +T + + P T REA Y L++ RI+
Sbjct 309 FVNKITAKEPICRCLGCNQGCRKSITKKAIFCVQN--PFTGREASLHPTYEEGLENRRIL 366
Query 84 LAGAEPDGLEAQWRAFAVRQSPAPKVW 110
+ GA P GLEA R FA+R + P +W
Sbjct 367 IIGAGPAGLEAA-RIFAMRGA-RPVIW 391
>gi|114331350|ref|YP_747572.1| PilT domain-containing protein [Nitrosomonas eutropha C91]
gi|114308364|gb|ABI59607.1| PIN domain family protein [Nitrosomonas eutropha C91]
Length=142
Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/135 (29%), Positives = 57/135 (43%), Gaps = 20/135 (14%)
Query 3 LCDTNIWLALALSGHVHHRASRAWLDTINAPGVIH---FCRATQQSLLRLLTNRTVLGAY 59
L D N+ +AL +GHVHH + WL+ +IH C TQ LR++T A
Sbjct 4 LLDVNVLIALLDAGHVHHVRASQWLEQ----EIIHGWASCPLTQNGCLRIMTQPAYPEAL 59
Query 60 GSPPLTNREAWA---AYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLA 116
+ +R A A AF+ DD +L D + W +Q +D+YL
Sbjct 60 SLAAVASRLAQAIAHPTHAFVADDYSLL-----DAEQVNW-----QQMLGHWQIIDSYLL 109
Query 117 AFALTGGFELVTTDT 131
A+ V+ D+
Sbjct 110 GLAVRHHCRFVSFDS 124
>gi|330818818|ref|YP_004351035.1| PilT domain-containing protein [Burkholderia gladioli BSR3]
gi|327374360|gb|AEA65712.1| PilT domain-containing protein [Burkholderia gladioli BSR3]
Length=151
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/133 (30%), Positives = 56/133 (43%), Gaps = 17/133 (12%)
Query 3 LCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYGSP 62
L D N+ +AL +GHV H A+ W + A C T+ +LR++ N G+P
Sbjct 12 LLDVNVLIALLDAGHVQHEAAHEWFGSA-AHAAWATCPLTENGVLRIIGNPRYPNTLGTP 70
Query 63 ----PL-TNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAA 117
PL T A + + DD L+ P+ ++ R A Q D YL A
Sbjct 71 AAVAPLVTQLRAHPGHTFWWDD----LSLLNPEQVDVS-RILATDQV------TDTYLLA 119
Query 118 FALTGGFELVTTD 130
A G +L T D
Sbjct 120 LARVHGGKLATFD 132
>gi|15607757|ref|NP_215131.1| hypothetical protein Rv0617 [Mycobacterium tuberculosis H37Rv]
gi|15840020|ref|NP_335057.1| hypothetical protein MT0646 [Mycobacterium tuberculosis CDC1551]
gi|31791800|ref|NP_854293.1| hypothetical protein Mb0634 [Mycobacterium bovis AF2122/97]
79 more sequence titles
Length=133
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/148 (30%), Positives = 58/148 (40%), Gaps = 38/148 (25%)
Query 2 LLCDTNIWLALALSGHVHHRASRAWL---DTINAPGVIHFCRATQQSLLRLLTN------ 52
+L D N+ +AL ++ HVHH A+ WL DT A C TQ SL+R L
Sbjct 3 VLLDANVLIALVVAEHVHHDAAADWLMASDTGFAT-----CPMTQGSLVRFLVRSGQSAA 57
Query 53 --RTVLGAYGSPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVW 110
R V+ A + E W D + AG E G+ RQ
Sbjct 58 AARDVVSAVQCT--SRHEFWP--------DALSFAGVEVAGVVGH------RQVT----- 96
Query 111 MDAYLAAFALTGGFELVTTDTAFTQYGG 138
DAYLA A + +L T D+ G
Sbjct 97 -DAYLAQLARSHDGQLATLDSGLAHLHG 123
>gi|87123102|ref|ZP_01078953.1| hypothetical protein RS9917_04565 [Synechococcus sp. RS9917]
gi|86168822|gb|EAQ70078.1| hypothetical protein RS9917_04565 [Synechococcus sp. RS9917]
Length=149
Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/60 (37%), Positives = 29/60 (49%), Gaps = 1/60 (1%)
Query 3 LCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYGSP 62
L D N+ +AL HVHH + W NA C TQ +LLR+L+N + G P
Sbjct 7 LLDVNVLIALLDPQHVHHEPAHRWFQA-NASYGWATCPLTQNALLRILSNPRYPNSPGGP 65
>gi|145221522|ref|YP_001132200.1| PilT domain-containing protein [Mycobacterium gilvum PYR-GCK]
gi|145214008|gb|ABP43412.1| PIN domain family protein [Mycobacterium gilvum PYR-GCK]
Length=145
Score = 35.4 bits (80), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/142 (27%), Positives = 58/142 (41%), Gaps = 8/142 (5%)
Query 1 MLLCDTNIWLALALSGHVHHRASRAWLD-TINAPGVIHFCRATQQSLLRLLTNRTVLGAY 59
M + D N+ L S HH ASR WLD ++ V+ + +RL T + +
Sbjct 1 MRIVDANVLLYAVNSSSEHHDASRRWLDGALSGNDVVGLAWVPMLAFVRLTTKHGLFPS- 59
Query 60 GSPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQ-SPAPKVWMDAYLAAF 118
PLT +A A + V+ P A A + + DA+LAA
Sbjct 60 ---PLTPDDAMARITDWCSAPGAVI--VNPTARHADVLATLLSDVGTGGNLVNDAHLAAL 114
Query 119 ALTGGFELVTTDTAFTQYGGIE 140
AL +V+ D F ++ G++
Sbjct 115 ALEHRARIVSYDNDFGRFSGVQ 136
>gi|320109069|ref|YP_004184659.1| PIN domain-containing protein family protein [Terriglobus saanensis
SP1PR4]
gi|319927590|gb|ADV84665.1| PIN domain protein family protein [Terriglobus saanensis SP1PR4]
Length=147
Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 41/143 (29%), Positives = 55/143 (39%), Gaps = 20/143 (13%)
Query 3 LCDTNIWLALALSGHVHHRASRAWLDTINAPGVI-HFCRATQQSLLRLLTNRTVLGAYGS 61
L D N+++AL H HH+ AW N P ++ C T+ LR T A
Sbjct 9 LLDVNVFVALLSEDHTHHQLVTAWF---NTPSLLWAICPFTEAGFLRNAT------APRP 59
Query 62 PPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRA----FAVRQSPAPKVWMDAYLAA 117
+T EA A A + G + A WR+ F+ R +V DAYL
Sbjct 60 GQITMTEATAVLARMAQ-----VPGYHYLPITADWRSLCSPFSTRLYGTKQV-TDAYLLG 113
Query 118 FALTGGFELVTTDTAFTQYGGIE 140
A+ LVT D G E
Sbjct 114 LAVREDLVLVTMDKGILHLAGNE 136
>gi|554598|gb|AAA42570.1| src-p68 phosphoprotein [Rous sarcoma virus]
Length=285
Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/45 (36%), Positives = 25/45 (56%), Gaps = 0/45 (0%)
Query 25 AWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYGSPPLTNREA 69
+WL T +PG+ C + +++ RL T R V G + P L +R A
Sbjct 167 SWLSTTTSPGLKRTCPSRKENACRLSTTRKVTGGWLIPSLQDRRA 211
>gi|317967919|ref|ZP_07969309.1| hypothetical protein SCB02_00127 [Synechococcus sp. CB0205]
Length=144
Score = 35.0 bits (79), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/62 (38%), Positives = 29/62 (47%), Gaps = 3/62 (4%)
Query 3 LCDTNIWLALALSGHVHHRASRAWL-DTINAPGVIHFCRATQQSLLRLLTNRTVLGAYGS 61
L D N+ +AL HVHH W D AP C TQ ++LR+L N + G
Sbjct 7 LLDVNVLIALLDPHHVHHELCHGWFADRGAAPWA--SCAMTQNAVLRILGNPRYPISPGP 64
Query 62 PP 63
PP
Sbjct 65 PP 66
>gi|297623624|ref|YP_003705058.1| PIN domain-containing protein [Truepera radiovictrix DSM 17093]
gi|297164804|gb|ADI14515.1| PIN domain protein family protein [Truepera radiovictrix DSM
17093]
Length=144
Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 40/151 (27%), Positives = 58/151 (39%), Gaps = 22/151 (14%)
Query 1 MLLCDTNIWLALALSGHVHHRASRAWLDT-INAPGVIHFCRATQQSLLRLLTNRTVLGAY 59
M+L D N + H A WL+ +N +R++T+ V
Sbjct 1 MILLDINPLVYAFRPDAPQHPAYVGWLEKLVNQDAAFGLADIVCSGFIRVVTHPRVF--- 57
Query 60 GSPPLTNREAWAAYAAFLDDDRIVLAGAEPDGL-----EAQWRAF---AVRQSPAPKVWM 111
SPP +A +L+D R A+P+ + E WR F V
Sbjct 58 -SPPSPLDDALE----YLEDIR-----AQPNCVILAPGERHWRIFLQLCHAVGAKGNVVP 107
Query 112 DAYLAAFALTGGFELVTTDTAFTQYGGIELR 142
DAYLAA A+ G EL T D ++ G+ R
Sbjct 108 DAYLAALAIESGSELATADRGVARFPGLRWR 138
>gi|121636671|ref|YP_976894.1| hypothetical protein BCG_0799 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224989143|ref|YP_002643830.1| hypothetical protein JTY_0769 [Mycobacterium bovis BCG str. Tokyo
172]
gi|289442150|ref|ZP_06431894.1| toxin [Mycobacterium tuberculosis T46]
10 more sequence titles
Length=142
Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 37/141 (27%), Positives = 51/141 (37%), Gaps = 6/141 (4%)
Query 1 MLLCDTNIWLALALSGHVHHRASRAWLDT-INAPGVIHFCRATQQSLLRLLTNRTVLGAY 59
M L D N+ LA H +HR R W D + A S LRL TNR +
Sbjct 1 MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEI- 59
Query 60 GSPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFA 119
P EA+A A + P L R + + DA LAA A
Sbjct 60 ---PSPRAEAFAFVEAVTAQPHHLPTNPGPRHL-VLLRKLCDEADASGDLIPDAVLAAIA 115
Query 120 LTGGFELVTTDTAFTQYGGIE 140
+ +V+ D F ++ +
Sbjct 116 VGHHCAVVSLDRDFARFASVR 136
>gi|15609667|ref|NP_217046.1| hypothetical protein Rv2530c [Mycobacterium tuberculosis H37Rv]
gi|15842064|ref|NP_337101.1| hypothetical protein MT2605 [Mycobacterium tuberculosis CDC1551]
gi|31793711|ref|NP_856204.1| hypothetical protein Mb2559c [Mycobacterium bovis AF2122/97]
81 more sequence titles
Length=139
Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/92 (28%), Positives = 43/92 (47%), Gaps = 5/92 (5%)
Query 3 LCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYGSP 62
L D N+ +AL HVHH A++ W ++ G T+ +R+ +NR+V+ +P
Sbjct 4 LLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWA-TTPITEAGYVRISSNRSVMQVSTTP 62
Query 63 PLTNREAWA----AYAAFLDDDRIVLAGAEPD 90
+ + A A F DD ++ G+ D
Sbjct 63 AIAIAQLAAMTSLAGHTFWPDDVPLIVGSAGD 94
>gi|336115788|ref|YP_004570554.1| hypothetical protein MLP_01370 [Microlunatus phosphovorus NM-1]
gi|334683566|dbj|BAK33151.1| hypothetical protein MLP_01370 [Microlunatus phosphovorus NM-1]
Length=139
Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/68 (39%), Positives = 33/68 (49%), Gaps = 11/68 (16%)
Query 2 LLCDTNIWLALALSGHVHHRASR---AWLDTINAPGVIHFCRATQQSLLRLLTNRTVLG- 57
+L D N+ LAL+ HVHH + A LDT N C T+ L+RLL V+G
Sbjct 1 MLLDVNVLLALSWDQHVHHEIAHQRFAELDTWNT------CPTTEAGLVRLLLTEQVVGR 54
Query 58 -AYGSPPL 64
GS L
Sbjct 55 KVIGSEAL 62
>gi|160898241|ref|YP_001563823.1| PilT domain-containing protein [Delftia acidovorans SPH-1]
gi|160363825|gb|ABX35438.1| PIN domain protein family protein [Delftia acidovorans SPH-1]
Length=145
Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 40/140 (29%), Positives = 58/140 (42%), Gaps = 20/140 (14%)
Query 5 DTNIWLALALSGHVHHRASRAWLDTINAPG----VIHFCRATQQSLLRLLTNRTVLGAYG 60
D N+ +A + S H HH +R WL+ A ++ S LRL+T+ +
Sbjct 4 DVNLLVAASRSDHPHHSVARDWLEQAMADASQGVLLKLQPMVVASFLRLVTHPKI----- 58
Query 61 SPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWM-----DAYL 115
N A F+ D + G E L A+W A RQ A K DA+L
Sbjct 59 ---FVNPTPMAEALRFI-DALLASPGVEQAVLGAEWPAL--RQLCADKALAANDVPDAWL 112
Query 116 AAFALTGGFELVTTDTAFTQ 135
AA A+ G +V+ D F +
Sbjct 113 AAAAIHQGEHVVSFDADFKR 132
>gi|15607889|ref|NP_215263.1| hypothetical protein Rv0749 [Mycobacterium tuberculosis H37Rv]
gi|15840162|ref|NP_335199.1| hypothetical protein MT0773 [Mycobacterium tuberculosis CDC1551]
gi|31791935|ref|NP_854428.1| hypothetical protein Mb0770 [Mycobacterium bovis AF2122/97]
64 more sequence titles
Length=142
Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 37/141 (27%), Positives = 51/141 (37%), Gaps = 6/141 (4%)
Query 1 MLLCDTNIWLALALSGHVHHRASRAWLDT-INAPGVIHFCRATQQSLLRLLTNRTVLGAY 59
M L D N+ LA H +HR R W D + A S LRL TNR +
Sbjct 1 MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEI- 59
Query 60 GSPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFA 119
P EA+A A + P L R + + DA LAA A
Sbjct 60 ---PSPRAEAFAFVEAVTAQPHHLPTNPGPRHL-MLLRKLCDEADASGDLIPDAVLAAIA 115
Query 120 LTGGFELVTTDTAFTQYGGIE 140
+ +V+ D F ++ +
Sbjct 116 VGHHCAVVSLDRDFARFASVR 136
>gi|88811999|ref|ZP_01127252.1| hypothetical protein NB231_06401 [Nitrococcus mobilis Nb-231]
gi|88790883|gb|EAR21997.1| hypothetical protein NB231_06401 [Nitrococcus mobilis Nb-231]
Length=145
Score = 33.9 bits (76), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 39/146 (27%), Positives = 57/146 (40%), Gaps = 12/146 (8%)
Query 1 MLLCDTNIWLALALSGHVHHRASRAWLDT-INAPGVIHFCRATQQSLLRLLTNRTVLGAY 59
M+L D N+ + H A R WL+ IN G +R++T+ V +
Sbjct 1 MILMDVNVLVYAHREDTADHLAYRDWLEEQINGLGAYGVSDLVLSGFIRVVTHPRV---F 57
Query 60 GSPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFA--VRQSPAP-KVWMDAYLA 116
P +R AF+ R W F VR S A + DAY A
Sbjct 58 ERPTPLDRAL-----AFVHQVRSQPQAVPIRPGPRHWAIFEKLVRLSKAEGNLVPDAYHA 112
Query 117 AFALTGGFELVTTDTAFTQYGGIELR 142
A A+ G + +TTD F ++ G+ R
Sbjct 113 ALAIEAGCDWITTDKGFLRFPGLRAR 138
>gi|306774366|ref|ZP_07412703.1| toxin [Mycobacterium tuberculosis SUMu001]
gi|306974699|ref|ZP_07487360.1| toxin [Mycobacterium tuberculosis SUMu010]
gi|307082408|ref|ZP_07491578.1| toxin [Mycobacterium tuberculosis SUMu011]
gi|308217200|gb|EFO76599.1| toxin [Mycobacterium tuberculosis SUMu001]
gi|308356102|gb|EFP44953.1| toxin [Mycobacterium tuberculosis SUMu010]
gi|308360056|gb|EFP48907.1| toxin [Mycobacterium tuberculosis SUMu011]
Length=142
Score = 33.9 bits (76), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 36/141 (26%), Positives = 51/141 (37%), Gaps = 6/141 (4%)
Query 1 MLLCDTNIWLALALSGHVHHRASRAWLDT-INAPGVIHFCRATQQSLLRLLTNRTVLGAY 59
M L D N+ LA H +HR R W D + A S LRL TNR +
Sbjct 1 MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEI- 59
Query 60 GSPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFA 119
P +A+A A + P L R + + DA LAA A
Sbjct 60 ---PSPRADAFAFVEAVNAQPHHLPTSPGPRHL-VLLRKLCDEADASGDLIPDAVLAAIA 115
Query 120 LTGGFELVTTDTAFTQYGGIE 140
+ +V+ D F ++ +
Sbjct 116 VEHHCAVVSLDRDFARFASVR 136
Lambda K H
0.324 0.136 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 127605758688
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40