BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2602

Length=146
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609739|ref|NP_217118.1|  hypothetical protein Rv2602 [Mycoba...   297    3e-79
gi|289448253|ref|ZP_06437997.1|  toxin [Mycobacterium tuberculosi...   295    1e-78
gi|87123268|ref|ZP_01079119.1|  hypothetical protein RS9917_05395...   114    5e-24
gi|33864607|ref|NP_896166.1|  hypothetical protein SYNW0071 [Syne...   107    7e-22
gi|322433890|ref|YP_004216102.1|  hypothetical protein AciX9_0248...   104    5e-21
gi|94263619|ref|ZP_01287429.1|  Protein of unknown function Mtu_f...   103    1e-20
gi|87300559|ref|ZP_01083401.1|  hypothetical protein WH5701_03905...  99.4    2e-19
gi|320108460|ref|YP_004184050.1|  PIN domain-containing protein f...  87.8    5e-16
gi|333967818|gb|AEG34582.1|  PIN domain protein family protein [T...  81.6    3e-14
gi|254430307|ref|ZP_05044010.1|  hypothetical protein CPCC7001_19...  66.2    2e-09
gi|87123096|ref|ZP_01078947.1|  hypothetical protein RS9917_04535...  64.3    5e-09
gi|33865109|ref|NP_896668.1|  hypothetical protein SYNW0573 [Syne...  59.3    2e-07
gi|116073603|ref|ZP_01470865.1|  hypothetical protein RS9916_3417...  51.6    4e-05
gi|297623633|ref|YP_003705067.1|  PIN domain-containing protein [...  46.6    0.001
gi|326772971|ref|ZP_08232255.1|  toxin-antitoxin system, toxin co...  41.2    0.050
gi|340358885|ref|ZP_08681388.1|  PIN family toxin-antitoxin syste...  41.2    0.051
gi|15608382|ref|NP_215758.1|  hypothetical protein Rv1242 [Mycoba...  40.4    0.090
gi|240168912|ref|ZP_04747571.1|  hypothetical protein MkanA1_0634...  40.0    0.12 
gi|289573902|ref|ZP_06454129.1|  toxin [Mycobacterium tuberculosi...  38.9    0.22 
gi|116624725|ref|YP_826881.1|  PilT domain-containing protein [Ca...  38.5    0.31 
gi|240169388|ref|ZP_04748047.1|  hypothetical protein MkanA1_0874...  38.5    0.34 
gi|308270136|emb|CBX26748.1|  hypothetical protein N47_A07770 [un...  38.1    0.38 
gi|254420497|ref|ZP_05034221.1|  Mycobacterium tuberculosis PIN d...  38.1    0.41 
gi|336179654|ref|YP_004585029.1|  PIN domain-containing protein f...  37.4    0.69 
gi|113953974|ref|YP_729372.1|  hypothetical protein sync_0135 [Sy...  37.4    0.73 
gi|323692181|ref|ZP_08106424.1|  hypothetical protein HMPREF9475_...  37.0    0.90 
gi|114331350|ref|YP_747572.1|  PilT domain-containing protein [Ni...  37.0    1.0  
gi|330818818|ref|YP_004351035.1|  PilT domain-containing protein ...  36.6    1.2  
gi|15607757|ref|NP_215131.1|  hypothetical protein Rv0617 [Mycoba...  36.6    1.3  
gi|87123102|ref|ZP_01078953.1|  hypothetical protein RS9917_04565...  36.2    1.8  
gi|145221522|ref|YP_001132200.1|  PilT domain-containing protein ...  35.4    3.2  
gi|320109069|ref|YP_004184659.1|  PIN domain-containing protein f...  35.0    3.3  
gi|554598|gb|AAA42570.1|  src-p68 phosphoprotein [Rous sarcoma vi...  35.0    3.5  
gi|317967919|ref|ZP_07969309.1|  hypothetical protein SCB02_00127...  35.0    4.0  
gi|297623624|ref|YP_003705058.1|  PIN domain-containing protein [...  34.7    4.8  
gi|121636671|ref|YP_976894.1|  hypothetical protein BCG_0799 [Myc...  34.7    4.8  
gi|15609667|ref|NP_217046.1|  hypothetical protein Rv2530c [Mycob...  34.3    5.8  
gi|336115788|ref|YP_004570554.1|  hypothetical protein MLP_01370 ...  34.3    5.9  
gi|160898241|ref|YP_001563823.1|  PilT domain-containing protein ...  34.3    6.1  
gi|15607889|ref|NP_215263.1|  hypothetical protein Rv0749 [Mycoba...  34.3    6.2  
gi|88811999|ref|ZP_01127252.1|  hypothetical protein NB231_06401 ...  33.9    8.1  
gi|306774366|ref|ZP_07412703.1|  toxin [Mycobacterium tuberculosi...  33.9    9.2  


>gi|15609739|ref|NP_217118.1| hypothetical protein Rv2602 [Mycobacterium tuberculosis H37Rv]
 gi|15842142|ref|NP_337179.1| hypothetical protein MT2677 [Mycobacterium tuberculosis CDC1551]
 gi|31793787|ref|NP_856280.1| hypothetical protein Mb2634 [Mycobacterium bovis AF2122/97]
 79 more sequence titles
 Length=146

 Score =  297 bits (761),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 146/146 (100%), Positives = 146/146 (100%), Gaps = 0/146 (0%)

Query  1    MLLCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYG  60
            MLLCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYG
Sbjct  1    MLLCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYG  60

Query  61   SPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFAL  120
            SPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFAL
Sbjct  61   SPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFAL  120

Query  121  TGGFELVTTDTAFTQYGGIELRLLAK  146
            TGGFELVTTDTAFTQYGGIELRLLAK
Sbjct  121  TGGFELVTTDTAFTQYGGIELRLLAK  146


>gi|289448253|ref|ZP_06437997.1| toxin [Mycobacterium tuberculosis CPHL_A]
 gi|289421211|gb|EFD18412.1| toxin [Mycobacterium tuberculosis CPHL_A]
Length=146

 Score =  295 bits (756),  Expect = 1e-78, Method: Compositional matrix adjust.
 Identities = 145/146 (99%), Positives = 145/146 (99%), Gaps = 0/146 (0%)

Query  1    MLLCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYG  60
            MLLCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYG
Sbjct  1    MLLCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYG  60

Query  61   SPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFAL  120
            SPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFAL
Sbjct  61   SPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFAL  120

Query  121  TGGFELVTTDTAFTQYGGIELRLLAK  146
            TGGFELVTTDTAFTQY GIELRLLAK
Sbjct  121  TGGFELVTTDTAFTQYSGIELRLLAK  146


>gi|87123268|ref|ZP_01079119.1| hypothetical protein RS9917_05395 [Synechococcus sp. RS9917]
 gi|86168988|gb|EAQ70244.1| hypothetical protein RS9917_05395 [Synechococcus sp. RS9917]
Length=148

 Score =  114 bits (284),  Expect = 5e-24, Method: Compositional matrix adjust.
 Identities = 67/144 (47%), Positives = 89/144 (62%), Gaps = 7/144 (4%)

Query  3    LCDTNIWLALALSGHV-HHRASRAWLDTINAPGVIHF--CRATQQSLLRLLTNRTVLGAY  59
            L DTN+WLA++   H  H +A RA+ DT   P   H+  CRATQQS LRL+    +  AY
Sbjct  5    LIDTNVWLAISFDTHPGHTQARRAFQDT---PSSDHWLWCRATQQSYLRLMATPALHRAY  61

Query  60   GSPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFA  119
            GSPPL+NR+A A+    L   RI++A  EP G+   W   A  Q PAPK+WMDAYLAA A
Sbjct  62   GSPPLSNRDARASLEILLAHPRILIAD-EPAGVSELWLQLADHQRPAPKLWMDAYLAAVA  120

Query  120  LTGGFELVTTDTAFTQYGGIELRL  143
            + GG+ L++ D  F ++    L+L
Sbjct  121  IQGGWRLLSLDQDFERFCSAGLQL  144


>gi|33864607|ref|NP_896166.1| hypothetical protein SYNW0071 [Synechococcus sp. WH 8102]
 gi|33632130|emb|CAE06586.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
Length=148

 Score =  107 bits (266),  Expect = 7e-22, Method: Compositional matrix adjust.
 Identities = 62/143 (44%), Positives = 85/143 (60%), Gaps = 5/143 (3%)

Query  3    LCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHF--CRATQQSLLRLLTNRTVLGAYG  60
            L DTN+WLA++   H  H  +R      ++PG  H+  CRATQQS LRL+    +  AYG
Sbjct  5    LIDTNVWLAISFDAHPGHALARQAFQ--DSPGSDHWLWCRATQQSYLRLMATPALHSAYG  62

Query  61   SPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFAL  120
            SP L+NR+A A+    L   RI++A  EP  +   W   A  Q PAPK+WMDAYLAA A+
Sbjct  63   SPALSNRDARASMEILLAHPRILVAD-EPAEVSDLWLQLADHQRPAPKLWMDAYLAAVAI  121

Query  121  TGGFELVTTDTAFTQYGGIELRL  143
             GG+ L++ D  F ++    L+L
Sbjct  122  QGGWRLLSFDRDFERFCNAGLQL  144


>gi|322433890|ref|YP_004216102.1| hypothetical protein AciX9_0248 [Acidobacterium sp. MP5ACTX9]
 gi|321161617|gb|ADW67322.1| hypothetical protein AciX9_0248 [Acidobacterium sp. MP5ACTX9]
Length=146

 Score =  104 bits (259),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 57/141 (41%), Positives = 77/141 (55%), Gaps = 6/141 (4%)

Query  5    DTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYGSPPL  64
            D N+W+ALA   H HHR +  W+D++     ++FCR +Q  LLR LT     GA G   L
Sbjct  10   DVNVWVALAHERHTHHRVASEWIDSVGPRSALYFCRISQLGLLRTLTTG---GAMGGDVL  66

Query  65   TNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFALTGGF  124
            T  +AW  Y +FL+D R      EP G+E ++R    R   + K+W DAY A FA   G 
Sbjct  67   TQAQAWMTYDSFLEDSRNRFMD-EPAGIEQEFRERTFRDEASNKLWADAYFATFAQLAGL  125

Query  125  ELVTTDTAFTQY--GGIELRL  143
            +LVT D A  +   G + LRL
Sbjct  126  KLVTFDKALAKSVPGALLLRL  146


>gi|94263619|ref|ZP_01287429.1| Protein of unknown function Mtu_fam_191 [delta proteobacterium 
MLMS-1]
 gi|93456039|gb|EAT06190.1| Protein of unknown function Mtu_fam_191 [delta proteobacterium 
MLMS-1]
Length=149

 Score =  103 bits (256),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 59/144 (41%), Positives = 79/144 (55%), Gaps = 3/144 (2%)

Query  3    LCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYGSP  62
            L DTN+W+A   + H  H  ++  L          FCR+TQQS LRL +   +L AYG+ 
Sbjct  5    LVDTNVWIAAIFTSHPFHNPAQQSLQQATPAVPTVFCRSTQQSFLRLASTPILLKAYGAE  64

Query  63   PLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFALTG  122
             LTNR+A  A  A     ++ +   EP GL   WRA A   + +PKVWMDAYLAAFA+  
Sbjct  65   GLTNRDALVALDALQALPQVCIRD-EPPGLSTLWRAMASMDTASPKVWMDAYLAAFAIGS  123

Query  123  GFELVTTDTAFTQY--GGIELRLL  144
               LVT D  F  +   G++L L+
Sbjct  124  ALRLVTLDHDFKNFVPQGLDLVLI  147


>gi|87300559|ref|ZP_01083401.1| hypothetical protein WH5701_03905 [Synechococcus sp. WH 5701]
 gi|87284430|gb|EAQ76382.1| hypothetical protein WH5701_03905 [Synechococcus sp. WH 5701]
Length=155

 Score = 99.4 bits (246),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 58/134 (44%), Positives = 74/134 (56%), Gaps = 1/134 (0%)

Query  3    LCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYGSP  62
            L D N+WLA A   H  HR ++A L        +  CRATQQS LRL +   +  AY S 
Sbjct  5    LLDVNVWLAAAFEAHPAHRTAQAVLLEATPATPVLLCRATQQSFLRLASTPAIFTAYKSA  64

Query  63   PLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFALTG  122
             +TN +A AA  +F    ++ L   EP G+E+ W   A     APK WMDAYLAAFA+TG
Sbjct  65   AITNLDALAALQSFQALPQVDLMD-EPIGIESLWWRLAGLAEAAPKRWMDAYLAAFAITG  123

Query  123  GFELVTTDTAFTQY  136
               +VT D  F Q+
Sbjct  124  STRMVTLDQDFRQF  137


>gi|320108460|ref|YP_004184050.1| PIN domain-containing protein family protein [Terriglobus saanensis 
SP1PR4]
 gi|319926981|gb|ADV84056.1| PIN domain protein family protein [Terriglobus saanensis SP1PR4]
Length=142

 Score = 87.8 bits (216),  Expect = 5e-16, Method: Compositional matrix adjust.
 Identities = 54/136 (40%), Positives = 75/136 (56%), Gaps = 13/136 (9%)

Query  2    LLCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYGS  61
            L  D N+WLAL    H H R ++ W  T+ +  ++ FCR TQ   LR+LTN+T + A   
Sbjct  5    LFPDVNVWLALTGETHEHSRPAQIWYGTLISETLL-FCRMTQLGFLRILTNKTAMQA---  60

Query  62   PPLTNREAWAAYAAFLDDDRIVLAGA----EPDGLEAQWRAFAVRQSPAPKVWMDAYLAA  117
               TN +A   Y  ++  D     GA    EPD +EA + + A   + +PK+W DAYL+A
Sbjct  61   DVKTNLQALRIYQQWIQTD-----GARYREEPDNMEAAFASIASTTASSPKLWNDAYLSA  115

Query  118  FALTGGFELVTTDTAF  133
            FA+T G  LVT D A 
Sbjct  116  FAVTAGLRLVTFDRAL  131


>gi|333967818|gb|AEG34582.1| PIN domain protein family protein [Thermus thermophilus SG0.5JP17-16]
Length=138

 Score = 81.6 bits (200),  Expect = 3e-14, Method: Compositional matrix adjust.
 Identities = 57/141 (41%), Positives = 75/141 (54%), Gaps = 8/141 (5%)

Query  1    MLLCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYG  60
            M L D N+W AL +  H  H  +RA+ +  + P ++   R T   LLRLLTN     A  
Sbjct  1    MDLLDLNVWFALLVPEHPFHPRARAYWERASDPFLV---RVTALGLLRLLTNAK---AMD  54

Query  61   SPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFAL  120
              PL  REAW  Y        + L   EP+GL+ +  A  VR   +P++W DAYLAAFAL
Sbjct  55   GKPLEVREAWRVYWELRLSSGVPLL-EEPEGLD-EALADLVRGGFSPRLWTDAYLAAFAL  112

Query  121  TGGFELVTTDTAFTQYGGIEL  141
             GG  LVT D  F  + G+E+
Sbjct  113  AGGHRLVTFDQDFLGFPGLEV  133


>gi|254430307|ref|ZP_05044010.1| hypothetical protein CPCC7001_197 [Cyanobium sp. PCC 7001]
 gi|197624760|gb|EDY37319.1| hypothetical protein CPCC7001_197 [Cyanobium sp. PCC 7001]
Length=144

 Score = 66.2 bits (160),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 49/138 (36%), Positives = 73/138 (53%), Gaps = 5/138 (3%)

Query  3    LCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYGSP  62
            L D N+WLALA S H+HHR +  + + + A  V+ FC  T   L+RL++   ++G     
Sbjct  7    LPDLNVWLALASSQHIHHRQALHYWEQLAAEQVL-FCTVTALGLVRLVSQPRLMGDAVK-  64

Query  63   PLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFALTG  122
                 EA    AAF     + LA AE DG +   R     + P P++  DA+LAA A+T 
Sbjct  65   --NAAEASELLAAFCRQPGVALAPAEHDGWDVFHRLMRKGELP-PRLCTDAHLAALAMTH  121

Query  123  GFELVTTDTAFTQYGGIE  140
            G+ LV+ D  F ++ G+ 
Sbjct  122  GWRLVSFDRDFKRFEGLH  139


>gi|87123096|ref|ZP_01078947.1| hypothetical protein RS9917_04535 [Synechococcus sp. RS9917]
 gi|86168816|gb|EAQ70072.1| hypothetical protein RS9917_04535 [Synechococcus sp. RS9917]
Length=144

 Score = 64.3 bits (155),  Expect = 5e-09, Method: Compositional matrix adjust.
 Identities = 48/143 (34%), Positives = 75/143 (53%), Gaps = 5/143 (3%)

Query  3    LCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYGSP  62
            L D N+WLALA + H HH  + A+ +   A  V+ FC  T   L+RL++   V+GA    
Sbjct  7    LPDLNVWLALATADHKHHDHAVAYWEGEAAEQVL-FCTVTALGLVRLVSQAKVMGA---A  62

Query  63   PLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFALTG  122
              + R+A     AF   + + +A    +G +   +  A    PA ++  D YLAA A++ 
Sbjct  63   VKSARDASELLRAFCQLEGVGMATPTSNGWDVFHQLMAGGNHPA-RLCTDTYLAALAISN  121

Query  123  GFELVTTDTAFTQYGGIELRLLA  145
            G+ LV+ D  F ++ G+E  LLA
Sbjct  122  GWRLVSFDRDFDRFAGLERLLLA  144


>gi|33865109|ref|NP_896668.1| hypothetical protein SYNW0573 [Synechococcus sp. WH 8102]
 gi|33638793|emb|CAE07088.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
Length=144

 Score = 59.3 bits (142),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 46/142 (33%), Positives = 68/142 (48%), Gaps = 11/142 (7%)

Query  3    LCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYGSP  62
            L D N+WLALA   H HH ++  + +   +  V+ FC  T   L+RL+    V+G     
Sbjct  7    LPDLNVWLALASPNHKHHSSAVQYWEKQASQQVL-FCTTTALGLVRLVMQPKVMGGAALM  65

Query  63   PLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFA--VRQSP-APKVWMDAYLAAFA  119
            P    +A A    FL    +  A    DG    W  F   +RQ+   P++  DA+LAA A
Sbjct  66   P---ADASALLETFLQQPGVSHAQPTSDG----WDVFHLLMRQADLTPRLCTDAHLAALA  118

Query  120  LTGGFELVTTDTAFTQYGGIEL  141
            +T  + LV+ D  F  + G+ L
Sbjct  119  ITNQWRLVSFDQDFQLFSGLNL  140


>gi|116073603|ref|ZP_01470865.1| hypothetical protein RS9916_34172 [Synechococcus sp. RS9916]
 gi|116068908|gb|EAU74660.1| hypothetical protein RS9916_34172 [Synechococcus sp. RS9916]
Length=144

 Score = 51.6 bits (122),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 44/142 (31%), Positives = 69/142 (49%), Gaps = 11/142 (7%)

Query  3    LCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYGSP  62
            L D N+WLAL    H HH ++ A+ +   +  V+ FC  T   L+RL+    V+G     
Sbjct  7    LPDLNVWLALVSPTHQHHSSAVAYWEEQASQQVL-FCTVTALGLVRLVMQPKVMGDAAL-  64

Query  63   PLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFA--VRQSP-APKVWMDAYLAAFA  119
              T   A A    F+    +  A    +G    W  F   +RQ+  +P++  DA+LAA A
Sbjct  65   --TAAAASALLDQFVQQPGVSYAQPSSEG----WDVFHGLMRQAELSPRLCTDAHLAALA  118

Query  120  LTGGFELVTTDTAFTQYGGIEL  141
            +T  + LV+ D  F  + G++L
Sbjct  119  ITNQWRLVSFDRDFQLFPGLDL  140


>gi|297623633|ref|YP_003705067.1| PIN domain-containing protein [Truepera radiovictrix DSM 17093]
 gi|297164813|gb|ADI14524.1| PIN domain protein family protein [Truepera radiovictrix DSM 
17093]
Length=145

 Score = 46.6 bits (109),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 42/143 (30%), Positives = 63/143 (45%), Gaps = 6/143 (4%)

Query  1    MLLCDTNIWLALALSGHVHHRASRAWLDTINAPGV-IHFCRATQQSLLRLLTNRTVLGAY  59
            M+L D N+ +   + G   H A+ AWLD   + G  +     +  + LRL TN  V    
Sbjct  1    MILIDANLLIYAHVMGSPQHHAAHAWLDAQLSAGYRVGLPWPSLLAFLRLTTNPRVFER-  59

Query  60   GSPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFA  119
               PLT  EAWA   A+L    + L     +  +   R    +      +  DA+LAA A
Sbjct  60   ---PLTAAEAWAQVEAWLSVPSVWLPTPTAEHPKLL-RDLVTQTGATANLIPDAHLAALA  115

Query  120  LTGGFELVTTDTAFTQYGGIELR  142
            L  G  L +TD  F ++  ++ R
Sbjct  116  LEHGLTLCSTDGDFGRFPRLKWR  138


>gi|326772971|ref|ZP_08232255.1| toxin-antitoxin system, toxin component, PIN family [Actinomyces 
viscosus C505]
 gi|326637603|gb|EGE38505.1| toxin-antitoxin system, toxin component, PIN family [Actinomyces 
viscosus C505]
Length=146

 Score = 41.2 bits (95),  Expect = 0.050, Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 28/55 (51%), Gaps = 3/55 (5%)

Query  3   LCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLG  57
           L D N+ +AL+L  H HH    AW D ++       C  TQ + LRLL N  V G
Sbjct  9   LLDVNVLVALSLPNHAHHEVVSAWFDGVDQWAT---CSITQAAYLRLLMNPRVTG  60


>gi|340358885|ref|ZP_08681388.1| PIN family toxin-antitoxin system [Actinomyces sp. oral taxon 
448 str. F0400]
 gi|339885631|gb|EGQ75340.1| PIN family toxin-antitoxin system [Actinomyces sp. oral taxon 
448 str. F0400]
Length=148

 Score = 41.2 bits (95),  Expect = 0.051, Method: Compositional matrix adjust.
 Identities = 21/55 (39%), Positives = 30/55 (55%), Gaps = 3/55 (5%)

Query  3   LCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLG  57
           L D N+ LAL+L+ H HHR + +W + + A      C  T+ +  RLL N  V G
Sbjct  10  LLDVNVMLALSLANHAHHRVATSWFEDVGAWAT---CPITESAYCRLLLNSHVTG  61


>gi|15608382|ref|NP_215758.1| hypothetical protein Rv1242 [Mycobacterium tuberculosis H37Rv]
 gi|15840687|ref|NP_335724.1| hypothetical protein MT1280 [Mycobacterium tuberculosis CDC1551]
 gi|31792435|ref|NP_854928.1| hypothetical protein Mb1274 [Mycobacterium bovis AF2122/97]
 79 more sequence titles
 Length=143

 Score = 40.4 bits (93),  Expect = 0.090, Method: Compositional matrix adjust.
 Identities = 37/141 (27%), Positives = 61/141 (44%), Gaps = 6/141 (4%)

Query  1    MLLCDTNIWLALALSGHVHHRASRAW-LDTINAPGVIHFCRATQQSLLRLLTNRTVLGAY  59
            M++ D N+ L   ++G   HR + AW  DT+N    I          LR+ T+  VL A 
Sbjct  1    MIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAA-  59

Query  60   GSPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFA  119
               PL   +A A    +L    + L  A P  L+        +   A  +  D  LAA+ 
Sbjct  60   ---PLPTADAIAYVREWLSQPNVDLLTAGPRHLDIAL-GLLDKLGTASHLTTDVQLAAYG  115

Query  120  LTGGFELVTTDTAFTQYGGIE  140
            +    E+ ++DT F ++  ++
Sbjct  116  IEYDAEIHSSDTDFARFADLK  136


>gi|240168912|ref|ZP_04747571.1| hypothetical protein MkanA1_06345 [Mycobacterium kansasii ATCC 
12478]
Length=143

 Score = 40.0 bits (92),  Expect = 0.12, Method: Compositional matrix adjust.
 Identities = 36/140 (26%), Positives = 62/140 (45%), Gaps = 6/140 (4%)

Query  1    MLLCDTNIWLALALSGHVHHRASRAW-LDTINAPGVIHFCRATQQSLLRLLTNRTVLGAY  59
            M++ D N+ L   ++G   HR + AW  DT+N+   I          LR++TN  +L   
Sbjct  1    MIIPDVNLLLYAVITGFPQHRRAYAWWHDTVNSQERIGLTYPAVFGFLRIVTNARIL---  57

Query  60   GSPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFA  119
             + PL+  EA A    +L    + L       L+        +   A  +  D  LAA+A
Sbjct  58   -TEPLSATEAVAYVRDWLTQPNVDLLIPSARHLDLAL-GLLEQLGTASNLTTDVQLAAYA  115

Query  120  LTGGFELVTTDTAFTQYGGI  139
            +    E+ ++D  F ++ G+
Sbjct  116  IEHNAEMHSSDADFARFAGL  135


>gi|289573902|ref|ZP_06454129.1| toxin [Mycobacterium tuberculosis K85]
 gi|289538333|gb|EFD42911.1| toxin [Mycobacterium tuberculosis K85]
Length=143

 Score = 38.9 bits (89),  Expect = 0.22, Method: Compositional matrix adjust.
 Identities = 37/141 (27%), Positives = 60/141 (43%), Gaps = 6/141 (4%)

Query  1    MLLCDTNIWLALALSGHVHHRASRAW-LDTINAPGVIHFCRATQQSLLRLLTNRTVLGAY  59
            M++ D N+ L   ++G   HR + AW  DT+N    I          LR+ T+  VL A 
Sbjct  1    MIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAA-  59

Query  60   GSPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFA  119
               PL   +A A    +L    + L  A P  L+        +   A     D  LAA+ 
Sbjct  60   ---PLPTADAIAYVREWLSQPNVDLLTAGPRHLDIAL-GLLDKLGTASHRTTDVQLAAYG  115

Query  120  LTGGFELVTTDTAFTQYGGIE  140
            +    E+ ++DT F ++  ++
Sbjct  116  IEYDAEIHSSDTDFARFADLK  136


>gi|116624725|ref|YP_826881.1| PilT domain-containing protein [Candidatus Solibacter usitatus 
Ellin6076]
 gi|116227887|gb|ABJ86596.1| PIN domain family protein [Candidatus Solibacter usitatus Ellin6076]
Length=142

 Score = 38.5 bits (88),  Expect = 0.31, Method: Compositional matrix adjust.
 Identities = 36/141 (26%), Positives = 64/141 (46%), Gaps = 6/141 (4%)

Query  1    MLLCDTNIWLALALSGHVHHRASRAWLD-TINAPGVIHFCRATQQSLLRLLTNRTVLGAY  59
            M L D NI L         H+++R WL+ T++    + F      + LRL T   +    
Sbjct  1    MKLLDANILLYAVNKDAPLHQSARQWLEKTLSGDEPLGFSWNVILAFLRLTTRPGLF---  57

Query  60   GSPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFA  119
               PL+  +A+   A++L +   ++  A P  LE   R      + A  +  DA+L A A
Sbjct  58   -RKPLSPDQAFDLVASWLAEPAAIIVHAGPRHLEIVHRLIKPLGT-AGNLTSDAHLGALA  115

Query  120  LTGGFELVTTDTAFTQYGGIE  140
            +    +L + D+ F ++ G++
Sbjct  116  IEQNAQLCSCDSDFARFSGVD  136


>gi|240169388|ref|ZP_04748047.1| hypothetical protein MkanA1_08748 [Mycobacterium kansasii ATCC 
12478]
Length=133

 Score = 38.5 bits (88),  Expect = 0.34, Method: Compositional matrix adjust.
 Identities = 41/137 (30%), Positives = 54/137 (40%), Gaps = 24/137 (17%)

Query  3    LCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYGSP  62
            L D+N+ +AL ++ HVHH  + AWL   +       C  TQ SL+R L  RT     G P
Sbjct  4    LLDSNVLIALVVAEHVHHDVAAAWLSARDNG--FATCPITQGSLVRFLM-RT-----GQP  55

Query  63   PLTNREAWAAYAAFLDD----DRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAF  118
                RE   A           D +  A  E  G+         RQ        DAYLA  
Sbjct  56   AAVAREVVGAVETAKRHEFWPDSVSFADVEIGGVVGH------RQV------TDAYLAQL  103

Query  119  ALTGGFELVTTDTAFTQ  135
            A +   +L T D+    
Sbjct  104  ARSRNGQLATLDSGLAH  120


>gi|308270136|emb|CBX26748.1| hypothetical protein N47_A07770 [uncultured Desulfobacterium 
sp.]
Length=143

 Score = 38.1 bits (87),  Expect = 0.38, Method: Compositional matrix adjust.
 Identities = 39/147 (27%), Positives = 65/147 (45%), Gaps = 18/147 (12%)

Query  1    MLLCDTNIWLALALS-GHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAY  59
            M+L D NI L    S   +H +A   W D ++    +  C     + +R+ TN  V    
Sbjct  1    MILVDANILLYAEDSLSPLHQQARLWWDDQLSKSEPVCLCWPVLSAFIRIGTNPRVFEH-  59

Query  60   GSPPLTNREAWAAYAAFLDDD--RIVLAGAEPDGLEAQWRAFAVR----QSPAPKVWMDA  113
               PL   +A     ++LD    R++         E  W  F +     Q+ A  V  DA
Sbjct  60   ---PLPLEQALTRVQSWLDQPCTRVI------QPTEQHWAVFMMMLKGGQAVANLV-TDA  109

Query  114  YLAAFALTGGFELVTTDTAFTQYGGIE  140
            +LAA A+  G +L +TD+ F+++  ++
Sbjct  110  HLAALAIENGCDLASTDSDFSRFPKLK  136


>gi|254420497|ref|ZP_05034221.1| Mycobacterium tuberculosis PIN domain family [Brevundimonas sp. 
BAL3]
 gi|196186674|gb|EDX81650.1| Mycobacterium tuberculosis PIN domain family [Brevundimonas sp. 
BAL3]
Length=145

 Score = 38.1 bits (87),  Expect = 0.41, Method: Compositional matrix adjust.
 Identities = 39/131 (30%), Positives = 51/131 (39%), Gaps = 13/131 (9%)

Query  3    LCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYGSP  62
            L D N+ +AL    HV H  +  W     A G    C  T+  L+R++ N       G P
Sbjct  4    LLDVNVLIALVDPRHVFHDTANGWFQR-EAAGSWATCPITENGLVRIVGNSRYRNPVGPP  62

Query  63   PLTNREAWAAYAAFLDDDRIVLAGAE--PDGLE-AQWRAFAVRQSPAPKVWMDAYLAAFA  119
                R         L D    +AG    PD +  A  R F       P+   DAYL A A
Sbjct  63   SEIVR-----ILELLRD----MAGHVFWPDAISLADDRLFDPSALTTPEQITDAYLLALA  113

Query  120  LTGGFELVTTD  130
            ++ G  L T D
Sbjct  114  VSNGGRLATLD  124


>gi|336179654|ref|YP_004585029.1| PIN domain-containing protein family protein [Frankia symbiont 
of Datisca glomerata]
 gi|334860634|gb|AEH11108.1| PIN domain protein family protein [Frankia symbiont of Datisca 
glomerata]
Length=131

 Score = 37.4 bits (85),  Expect = 0.69, Method: Compositional matrix adjust.
 Identities = 20/48 (42%), Positives = 27/48 (57%), Gaps = 2/48 (4%)

Query  3   LCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLL  50
           L D N+ + L ++ HVHH A+ AWL      G    C  T+ SL+RLL
Sbjct  4   LLDANVLITLIVTDHVHHDAAEAWL--AGTAGRFATCPITEGSLVRLL  49


>gi|113953974|ref|YP_729372.1| hypothetical protein sync_0135 [Synechococcus sp. CC9311]
 gi|113881325|gb|ABI46283.1| Mycobacterium tuberculosis PIN domain family subfamily [Synechococcus 
sp. CC9311]
Length=148

 Score = 37.4 bits (85),  Expect = 0.73, Method: Compositional matrix adjust.
 Identities = 22/60 (37%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query  3   LCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYGSP  62
           L D N+ +AL    HVHH  S  W       G    C  TQ +LLR+L N     + G P
Sbjct  7   LLDVNVLIALIDPQHVHHEPSHRWFQAHGGDGWA-TCPLTQNALLRILGNPRYPNSPGGP  65


>gi|323692181|ref|ZP_08106424.1| hypothetical protein HMPREF9475_01287 [Clostridium symbiosum 
WAL-14673]
 gi|323503755|gb|EGB19574.1| hypothetical protein HMPREF9475_01287 [Clostridium symbiosum 
WAL-14673]
Length=641

 Score = 37.0 bits (84),  Expect = 0.90, Method: Composition-based stats.
 Identities = 28/87 (33%), Positives = 42/87 (49%), Gaps = 6/87 (6%)

Query  26   WLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYGSPPLTNREA--WAAYAAFLDDDRIV  83
            +++ I A   I  C    Q   + +T + +       P T REA     Y   L++ RI+
Sbjct  309  FVNKITAKEPICRCLGCNQGCRKSITKKAIFCVQN--PFTGREASLHPTYEEGLENRRIL  366

Query  84   LAGAEPDGLEAQWRAFAVRQSPAPKVW  110
            + GA P GLEA  R FA+R +  P +W
Sbjct  367  IIGAGPAGLEAA-RIFAMRGA-RPVIW  391


>gi|114331350|ref|YP_747572.1| PilT domain-containing protein [Nitrosomonas eutropha C91]
 gi|114308364|gb|ABI59607.1| PIN domain family protein [Nitrosomonas eutropha C91]
Length=142

 Score = 37.0 bits (84),  Expect = 1.0, Method: Compositional matrix adjust.
 Identities = 38/135 (29%), Positives = 57/135 (43%), Gaps = 20/135 (14%)

Query  3    LCDTNIWLALALSGHVHHRASRAWLDTINAPGVIH---FCRATQQSLLRLLTNRTVLGAY  59
            L D N+ +AL  +GHVHH  +  WL+      +IH    C  TQ   LR++T      A 
Sbjct  4    LLDVNVLIALLDAGHVHHVRASQWLEQ----EIIHGWASCPLTQNGCLRIMTQPAYPEAL  59

Query  60   GSPPLTNREAWA---AYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLA  116
                + +R A A      AF+ DD  +L     D  +  W     +Q       +D+YL 
Sbjct  60   SLAAVASRLAQAIAHPTHAFVADDYSLL-----DAEQVNW-----QQMLGHWQIIDSYLL  109

Query  117  AFALTGGFELVTTDT  131
              A+      V+ D+
Sbjct  110  GLAVRHHCRFVSFDS  124


>gi|330818818|ref|YP_004351035.1| PilT domain-containing protein [Burkholderia gladioli BSR3]
 gi|327374360|gb|AEA65712.1| PilT domain-containing protein [Burkholderia gladioli BSR3]
Length=151

 Score = 36.6 bits (83),  Expect = 1.2, Method: Compositional matrix adjust.
 Identities = 39/133 (30%), Positives = 56/133 (43%), Gaps = 17/133 (12%)

Query  3    LCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYGSP  62
            L D N+ +AL  +GHV H A+  W  +  A      C  T+  +LR++ N       G+P
Sbjct  12   LLDVNVLIALLDAGHVQHEAAHEWFGSA-AHAAWATCPLTENGVLRIIGNPRYPNTLGTP  70

Query  63   ----PL-TNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAA  117
                PL T   A   +  + DD    L+   P+ ++   R  A  Q        D YL A
Sbjct  71   AAVAPLVTQLRAHPGHTFWWDD----LSLLNPEQVDVS-RILATDQV------TDTYLLA  119

Query  118  FALTGGFELVTTD  130
             A   G +L T D
Sbjct  120  LARVHGGKLATFD  132


>gi|15607757|ref|NP_215131.1| hypothetical protein Rv0617 [Mycobacterium tuberculosis H37Rv]
 gi|15840020|ref|NP_335057.1| hypothetical protein MT0646 [Mycobacterium tuberculosis CDC1551]
 gi|31791800|ref|NP_854293.1| hypothetical protein Mb0634 [Mycobacterium bovis AF2122/97]
 79 more sequence titles
 Length=133

 Score = 36.6 bits (83),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 44/148 (30%), Positives = 58/148 (40%), Gaps = 38/148 (25%)

Query  2    LLCDTNIWLALALSGHVHHRASRAWL---DTINAPGVIHFCRATQQSLLRLLTN------  52
            +L D N+ +AL ++ HVHH A+  WL   DT  A      C  TQ SL+R L        
Sbjct  3    VLLDANVLIALVVAEHVHHDAAADWLMASDTGFAT-----CPMTQGSLVRFLVRSGQSAA  57

Query  53   --RTVLGAYGSPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVW  110
              R V+ A      +  E W         D +  AG E  G+         RQ       
Sbjct  58   AARDVVSAVQCT--SRHEFWP--------DALSFAGVEVAGVVGH------RQVT-----  96

Query  111  MDAYLAAFALTGGFELVTTDTAFTQYGG  138
             DAYLA  A +   +L T D+      G
Sbjct  97   -DAYLAQLARSHDGQLATLDSGLAHLHG  123


>gi|87123102|ref|ZP_01078953.1| hypothetical protein RS9917_04565 [Synechococcus sp. RS9917]
 gi|86168822|gb|EAQ70078.1| hypothetical protein RS9917_04565 [Synechococcus sp. RS9917]
Length=149

 Score = 36.2 bits (82),  Expect = 1.8, Method: Compositional matrix adjust.
 Identities = 22/60 (37%), Positives = 29/60 (49%), Gaps = 1/60 (1%)

Query  3   LCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYGSP  62
           L D N+ +AL    HVHH  +  W    NA      C  TQ +LLR+L+N     + G P
Sbjct  7   LLDVNVLIALLDPQHVHHEPAHRWFQA-NASYGWATCPLTQNALLRILSNPRYPNSPGGP  65


>gi|145221522|ref|YP_001132200.1| PilT domain-containing protein [Mycobacterium gilvum PYR-GCK]
 gi|145214008|gb|ABP43412.1| PIN domain family protein [Mycobacterium gilvum PYR-GCK]
Length=145

 Score = 35.4 bits (80),  Expect = 3.2, Method: Compositional matrix adjust.
 Identities = 37/142 (27%), Positives = 58/142 (41%), Gaps = 8/142 (5%)

Query  1    MLLCDTNIWLALALSGHVHHRASRAWLD-TINAPGVIHFCRATQQSLLRLLTNRTVLGAY  59
            M + D N+ L    S   HH ASR WLD  ++   V+        + +RL T   +  + 
Sbjct  1    MRIVDANVLLYAVNSSSEHHDASRRWLDGALSGNDVVGLAWVPMLAFVRLTTKHGLFPS-  59

Query  60   GSPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQ-SPAPKVWMDAYLAAF  118
               PLT  +A A    +      V+    P    A   A  +        +  DA+LAA 
Sbjct  60   ---PLTPDDAMARITDWCSAPGAVI--VNPTARHADVLATLLSDVGTGGNLVNDAHLAAL  114

Query  119  ALTGGFELVTTDTAFTQYGGIE  140
            AL     +V+ D  F ++ G++
Sbjct  115  ALEHRARIVSYDNDFGRFSGVQ  136


>gi|320109069|ref|YP_004184659.1| PIN domain-containing protein family protein [Terriglobus saanensis 
SP1PR4]
 gi|319927590|gb|ADV84665.1| PIN domain protein family protein [Terriglobus saanensis SP1PR4]
Length=147

 Score = 35.0 bits (79),  Expect = 3.3, Method: Compositional matrix adjust.
 Identities = 41/143 (29%), Positives = 55/143 (39%), Gaps = 20/143 (13%)

Query  3    LCDTNIWLALALSGHVHHRASRAWLDTINAPGVI-HFCRATQQSLLRLLTNRTVLGAYGS  61
            L D N+++AL    H HH+   AW    N P ++   C  T+   LR  T      A   
Sbjct  9    LLDVNVFVALLSEDHTHHQLVTAWF---NTPSLLWAICPFTEAGFLRNAT------APRP  59

Query  62   PPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRA----FAVRQSPAPKVWMDAYLAA  117
              +T  EA A  A         + G     + A WR+    F+ R     +V  DAYL  
Sbjct  60   GQITMTEATAVLARMAQ-----VPGYHYLPITADWRSLCSPFSTRLYGTKQV-TDAYLLG  113

Query  118  FALTGGFELVTTDTAFTQYGGIE  140
             A+     LVT D       G E
Sbjct  114  LAVREDLVLVTMDKGILHLAGNE  136


>gi|554598|gb|AAA42570.1| src-p68 phosphoprotein [Rous sarcoma virus]
Length=285

 Score = 35.0 bits (79),  Expect = 3.5, Method: Compositional matrix adjust.
 Identities = 16/45 (36%), Positives = 25/45 (56%), Gaps = 0/45 (0%)

Query  25   AWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYGSPPLTNREA  69
            +WL T  +PG+   C + +++  RL T R V G +  P L +R A
Sbjct  167  SWLSTTTSPGLKRTCPSRKENACRLSTTRKVTGGWLIPSLQDRRA  211


>gi|317967919|ref|ZP_07969309.1| hypothetical protein SCB02_00127 [Synechococcus sp. CB0205]
Length=144

 Score = 35.0 bits (79),  Expect = 4.0, Method: Compositional matrix adjust.
 Identities = 23/62 (38%), Positives = 29/62 (47%), Gaps = 3/62 (4%)

Query  3   LCDTNIWLALALSGHVHHRASRAWL-DTINAPGVIHFCRATQQSLLRLLTNRTVLGAYGS  61
           L D N+ +AL    HVHH     W  D   AP     C  TQ ++LR+L N     + G 
Sbjct  7   LLDVNVLIALLDPHHVHHELCHGWFADRGAAPWA--SCAMTQNAVLRILGNPRYPISPGP  64

Query  62  PP  63
           PP
Sbjct  65  PP  66


>gi|297623624|ref|YP_003705058.1| PIN domain-containing protein [Truepera radiovictrix DSM 17093]
 gi|297164804|gb|ADI14515.1| PIN domain protein family protein [Truepera radiovictrix DSM 
17093]
Length=144

 Score = 34.7 bits (78),  Expect = 4.8, Method: Compositional matrix adjust.
 Identities = 40/151 (27%), Positives = 58/151 (39%), Gaps = 22/151 (14%)

Query  1    MLLCDTNIWLALALSGHVHHRASRAWLDT-INAPGVIHFCRATQQSLLRLLTNRTVLGAY  59
            M+L D N  +         H A   WL+  +N               +R++T+  V    
Sbjct  1    MILLDINPLVYAFRPDAPQHPAYVGWLEKLVNQDAAFGLADIVCSGFIRVVTHPRVF---  57

Query  60   GSPPLTNREAWAAYAAFLDDDRIVLAGAEPDGL-----EAQWRAF---AVRQSPAPKVWM  111
             SPP    +A      +L+D R     A+P+ +     E  WR F            V  
Sbjct  58   -SPPSPLDDALE----YLEDIR-----AQPNCVILAPGERHWRIFLQLCHAVGAKGNVVP  107

Query  112  DAYLAAFALTGGFELVTTDTAFTQYGGIELR  142
            DAYLAA A+  G EL T D    ++ G+  R
Sbjct  108  DAYLAALAIESGSELATADRGVARFPGLRWR  138


>gi|121636671|ref|YP_976894.1| hypothetical protein BCG_0799 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224989143|ref|YP_002643830.1| hypothetical protein JTY_0769 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|289442150|ref|ZP_06431894.1| toxin [Mycobacterium tuberculosis T46]
 10 more sequence titles
 Length=142

 Score = 34.7 bits (78),  Expect = 4.8, Method: Compositional matrix adjust.
 Identities = 37/141 (27%), Positives = 51/141 (37%), Gaps = 6/141 (4%)

Query  1    MLLCDTNIWLALALSGHVHHRASRAWLDT-INAPGVIHFCRATQQSLLRLLTNRTVLGAY  59
            M L D N+ LA     H +HR  R W D  + A            S LRL TNR +    
Sbjct  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEI-  59

Query  60   GSPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFA  119
               P    EA+A   A       +     P  L    R        +  +  DA LAA A
Sbjct  60   ---PSPRAEAFAFVEAVTAQPHHLPTNPGPRHL-VLLRKLCDEADASGDLIPDAVLAAIA  115

Query  120  LTGGFELVTTDTAFTQYGGIE  140
            +     +V+ D  F ++  + 
Sbjct  116  VGHHCAVVSLDRDFARFASVR  136


>gi|15609667|ref|NP_217046.1| hypothetical protein Rv2530c [Mycobacterium tuberculosis H37Rv]
 gi|15842064|ref|NP_337101.1| hypothetical protein MT2605 [Mycobacterium tuberculosis CDC1551]
 gi|31793711|ref|NP_856204.1| hypothetical protein Mb2559c [Mycobacterium bovis AF2122/97]
 81 more sequence titles
 Length=139

 Score = 34.3 bits (77),  Expect = 5.8, Method: Compositional matrix adjust.
 Identities = 25/92 (28%), Positives = 43/92 (47%), Gaps = 5/92 (5%)

Query  3   LCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYGSP  62
           L D N+ +AL    HVHH A++ W    ++ G       T+   +R+ +NR+V+    +P
Sbjct  4   LLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWA-TTPITEAGYVRISSNRSVMQVSTTP  62

Query  63  PLTNREAWA----AYAAFLDDDRIVLAGAEPD  90
            +   +  A    A   F  DD  ++ G+  D
Sbjct  63  AIAIAQLAAMTSLAGHTFWPDDVPLIVGSAGD  94


>gi|336115788|ref|YP_004570554.1| hypothetical protein MLP_01370 [Microlunatus phosphovorus NM-1]
 gi|334683566|dbj|BAK33151.1| hypothetical protein MLP_01370 [Microlunatus phosphovorus NM-1]
Length=139

 Score = 34.3 bits (77),  Expect = 5.9, Method: Compositional matrix adjust.
 Identities = 26/68 (39%), Positives = 33/68 (49%), Gaps = 11/68 (16%)

Query  2   LLCDTNIWLALALSGHVHHRASR---AWLDTINAPGVIHFCRATQQSLLRLLTNRTVLG-  57
           +L D N+ LAL+   HVHH  +    A LDT N       C  T+  L+RLL    V+G 
Sbjct  1   MLLDVNVLLALSWDQHVHHEIAHQRFAELDTWNT------CPTTEAGLVRLLLTEQVVGR  54

Query  58  -AYGSPPL  64
              GS  L
Sbjct  55  KVIGSEAL  62


>gi|160898241|ref|YP_001563823.1| PilT domain-containing protein [Delftia acidovorans SPH-1]
 gi|160363825|gb|ABX35438.1| PIN domain protein family protein [Delftia acidovorans SPH-1]
Length=145

 Score = 34.3 bits (77),  Expect = 6.1, Method: Compositional matrix adjust.
 Identities = 40/140 (29%), Positives = 58/140 (42%), Gaps = 20/140 (14%)

Query  5    DTNIWLALALSGHVHHRASRAWLDTINAPG----VIHFCRATQQSLLRLLTNRTVLGAYG  60
            D N+ +A + S H HH  +R WL+   A      ++        S LRL+T+  +     
Sbjct  4    DVNLLVAASRSDHPHHSVARDWLEQAMADASQGVLLKLQPMVVASFLRLVTHPKI-----  58

Query  61   SPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWM-----DAYL  115
                 N    A    F+ D  +   G E   L A+W A   RQ  A K        DA+L
Sbjct  59   ---FVNPTPMAEALRFI-DALLASPGVEQAVLGAEWPAL--RQLCADKALAANDVPDAWL  112

Query  116  AAFALTGGFELVTTDTAFTQ  135
            AA A+  G  +V+ D  F +
Sbjct  113  AAAAIHQGEHVVSFDADFKR  132


>gi|15607889|ref|NP_215263.1| hypothetical protein Rv0749 [Mycobacterium tuberculosis H37Rv]
 gi|15840162|ref|NP_335199.1| hypothetical protein MT0773 [Mycobacterium tuberculosis CDC1551]
 gi|31791935|ref|NP_854428.1| hypothetical protein Mb0770 [Mycobacterium bovis AF2122/97]
 64 more sequence titles
 Length=142

 Score = 34.3 bits (77),  Expect = 6.2, Method: Compositional matrix adjust.
 Identities = 37/141 (27%), Positives = 51/141 (37%), Gaps = 6/141 (4%)

Query  1    MLLCDTNIWLALALSGHVHHRASRAWLDT-INAPGVIHFCRATQQSLLRLLTNRTVLGAY  59
            M L D N+ LA     H +HR  R W D  + A            S LRL TNR +    
Sbjct  1    MFLLDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEI-  59

Query  60   GSPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFA  119
               P    EA+A   A       +     P  L    R        +  +  DA LAA A
Sbjct  60   ---PSPRAEAFAFVEAVTAQPHHLPTNPGPRHL-MLLRKLCDEADASGDLIPDAVLAAIA  115

Query  120  LTGGFELVTTDTAFTQYGGIE  140
            +     +V+ D  F ++  + 
Sbjct  116  VGHHCAVVSLDRDFARFASVR  136


>gi|88811999|ref|ZP_01127252.1| hypothetical protein NB231_06401 [Nitrococcus mobilis Nb-231]
 gi|88790883|gb|EAR21997.1| hypothetical protein NB231_06401 [Nitrococcus mobilis Nb-231]
Length=145

 Score = 33.9 bits (76),  Expect = 8.1, Method: Compositional matrix adjust.
 Identities = 39/146 (27%), Positives = 57/146 (40%), Gaps = 12/146 (8%)

Query  1    MLLCDTNIWLALALSGHVHHRASRAWLDT-INAPGVIHFCRATQQSLLRLLTNRTVLGAY  59
            M+L D N+ +         H A R WL+  IN  G            +R++T+  V   +
Sbjct  1    MILMDVNVLVYAHREDTADHLAYRDWLEEQINGLGAYGVSDLVLSGFIRVVTHPRV---F  57

Query  60   GSPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFA--VRQSPAP-KVWMDAYLA  116
              P   +R       AF+   R              W  F   VR S A   +  DAY A
Sbjct  58   ERPTPLDRAL-----AFVHQVRSQPQAVPIRPGPRHWAIFEKLVRLSKAEGNLVPDAYHA  112

Query  117  AFALTGGFELVTTDTAFTQYGGIELR  142
            A A+  G + +TTD  F ++ G+  R
Sbjct  113  ALAIEAGCDWITTDKGFLRFPGLRAR  138


>gi|306774366|ref|ZP_07412703.1| toxin [Mycobacterium tuberculosis SUMu001]
 gi|306974699|ref|ZP_07487360.1| toxin [Mycobacterium tuberculosis SUMu010]
 gi|307082408|ref|ZP_07491578.1| toxin [Mycobacterium tuberculosis SUMu011]
 gi|308217200|gb|EFO76599.1| toxin [Mycobacterium tuberculosis SUMu001]
 gi|308356102|gb|EFP44953.1| toxin [Mycobacterium tuberculosis SUMu010]
 gi|308360056|gb|EFP48907.1| toxin [Mycobacterium tuberculosis SUMu011]
Length=142

 Score = 33.9 bits (76),  Expect = 9.2, Method: Compositional matrix adjust.
 Identities = 36/141 (26%), Positives = 51/141 (37%), Gaps = 6/141 (4%)

Query  1    MLLCDTNIWLALALSGHVHHRASRAWLDT-INAPGVIHFCRATQQSLLRLLTNRTVLGAY  59
            M L D N+ LA     H +HR  R W D  + A            S LRL TNR +    
Sbjct  1    MFLIDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEI-  59

Query  60   GSPPLTNREAWAAYAAFLDDDRIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFA  119
               P    +A+A   A       +     P  L    R        +  +  DA LAA A
Sbjct  60   ---PSPRADAFAFVEAVNAQPHHLPTSPGPRHL-VLLRKLCDEADASGDLIPDAVLAAIA  115

Query  120  LTGGFELVTTDTAFTQYGGIE  140
            +     +V+ D  F ++  + 
Sbjct  116  VEHHCAVVSLDRDFARFASVR  136



Lambda     K      H
   0.324    0.136    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 127605758688


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40