BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2614A Length=75 Score E Sequences producing significant alignments: (Bits) Value gi|57117007|ref|YP_177674.1| hypothetical protein Rv2614A [Mycob... 146 1e-33 gi|31793800|ref|NP_856293.1| hypothetical protein Mb2647 [Mycoba... 145 3e-33 gi|340627633|ref|YP_004746085.1| hypothetical protein MCAN_26581... 143 7e-33 gi|313659554|ref|ZP_07816434.1| hypothetical protein MtubKV_1408... 128 3e-28 gi|294056518|ref|YP_003550176.1| triosephosphate isomerase [Cora... 39.3 0.22 gi|296140237|ref|YP_003647480.1| triosephosphate isomerase [Tsuk... 38.5 0.32 gi|182415633|ref|YP_001820699.1| Triose-phosphate isomerase [Opi... 38.5 0.34 gi|296411954|ref|XP_002835693.1| hypothetical protein [Tuber mel... 38.1 0.43 gi|254442740|ref|ZP_05056216.1| triosephosphate isomerase [Verru... 38.1 0.47 gi|224002643|ref|XP_002290993.1| triose-phosphate isomerase [Tha... 37.4 0.73 gi|240173321|ref|ZP_04751979.1| triosephosphate isomerase [Mycob... 37.0 0.88 gi|85091767|ref|XP_959063.1| triosephosphate isomerase [Neurospo... 36.6 1.3 gi|225159336|ref|ZP_03725634.1| Triose-phosphate isomerase [Opit... 36.6 1.4 gi|15827221|ref|NP_301484.1| triosephosphate isomerase [Mycobact... 36.6 1.4 gi|302922857|ref|XP_003053553.1| hypothetical protein NECHADRAFT... 36.2 1.7 gi|83858360|ref|ZP_00951882.1| Triosephosphate isomerase [Oceani... 36.2 1.8 gi|51243952|ref|YP_063836.1| triosephosphate isomerase [Desulfot... 36.2 1.8 gi|340959548|gb|EGS20729.1| triosephosphate isomerase-like prote... 35.4 2.5 gi|229493464|ref|ZP_04387249.1| triose-phosphate isomerase [Rhod... 35.4 2.5 gi|226306518|ref|YP_002766478.1| triose-phosphate isomerase [Rho... 35.4 2.7 gi|320355229|ref|YP_004196568.1| triosephosphate isomerase [Desu... 35.4 2.9 gi|116749490|ref|YP_846177.1| Triose-phosphate isomerase [Syntro... 35.0 3.3 gi|189485315|ref|YP_001956256.1| triosephosphate isomerase [uncu... 35.0 3.4 gi|219112703|ref|XP_002178103.1| triosephosphate isomerase [Phae... 35.0 3.4 gi|108804825|ref|YP_644762.1| triosephosphate isomerase [Rubroba... 35.0 3.7 gi|325279824|ref|YP_004252366.1| triosephosphate isomerase [Odor... 35.0 3.9 gi|219111901|ref|XP_002177702.1| triosephosphate isomerase [Phae... 35.0 4.0 gi|261339301|ref|ZP_05967159.1| hypothetical protein ENTCAN_0554... 35.0 4.1 gi|325000370|ref|ZP_08121482.1| triosephosphate isomerase [Pseud... 34.7 4.5 gi|336268436|ref|XP_003348983.1| hypothetical protein SMAC_02004... 34.7 4.7 gi|86740344|ref|YP_480744.1| triosephosphate isomerase [Frankia ... 34.7 4.8 gi|81157955|dbj|BAE48228.1| triosephosphate isomerase cytoplasmi... 34.7 4.8 gi|108799373|ref|YP_639570.1| triosephosphate isomerase [Mycobac... 34.7 4.9 gi|157962882|ref|YP_001502916.1| triosephosphate isomerase [Shew... 34.7 5.2 gi|167625063|ref|YP_001675357.1| triosephosphate isomerase [Shew... 34.7 5.2 gi|119774094|ref|YP_926834.1| triosephosphate isomerase [Shewane... 34.7 5.4 gi|212634070|ref|YP_002310595.1| triosephosphate isomerase [Shew... 34.3 5.6 gi|24372783|ref|NP_716825.1| triosephosphate isomerase [Shewanel... 34.3 5.6 gi|113969366|ref|YP_733159.1| triosephosphate isomerase [Shewane... 34.3 5.6 gi|300781135|ref|ZP_07090989.1| triose-phosphate isomerase [Cory... 34.3 6.0 gi|317491325|ref|ZP_07949761.1| FAD dependent oxidoreductase [En... 34.3 6.2 gi|302410865|ref|XP_003003266.1| triosephosphate isomerase [Vert... 34.3 6.2 gi|294142064|ref|YP_003558042.1| triosephosphate isomerase [Shew... 34.3 6.2 gi|127513759|ref|YP_001094956.1| Triose-phosphate isomerase [She... 34.3 6.2 gi|170727898|ref|YP_001761924.1| triosephosphate isomerase [Shew... 34.3 6.2 gi|91792363|ref|YP_562014.1| triosephosphate isomerase [Shewanel... 34.3 6.2 gi|120597896|ref|YP_962470.1| triosephosphate isomerase [Shewane... 34.3 6.2 gi|326800441|ref|YP_004318260.1| triosephosphate isomerase [Sphi... 34.3 6.7 gi|157376525|ref|YP_001475125.1| Triose-phosphate isomerase [She... 34.3 6.8 gi|118471699|ref|YP_887402.1| triosephosphate isomerase [Mycobac... 33.9 7.4 >gi|57117007|ref|YP_177674.1| hypothetical protein Rv2614A [Mycobacterium tuberculosis H37Rv] gi|121638502|ref|YP_978726.1| hypothetical protein BCG_2640 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|167968045|ref|ZP_02550322.1| hypothetical protein MtubH3_08418 [Mycobacterium tuberculosis H37Ra] 26 more sequence titles Length=75 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 74/75 (99%), Positives = 75/75 (100%), Gaps = 0/75 (0%) Query 1 VGDRYRAGDRVLYGGSMSPKDVDDLATQQDVDDGQSIERRWTGSGQRRWRRSPPTGRYRS 60 +GDRYRAGDRVLYGGSMSPKDVDDLATQQDVDDGQSIERRWTGSGQRRWRRSPPTGRYRS Sbjct 1 MGDRYRAGDRVLYGGSMSPKDVDDLATQQDVDDGQSIERRWTGSGQRRWRRSPPTGRYRS 60 Query 61 NSQIQVWISGAGRLR 75 NSQIQVWISGAGRLR Sbjct 61 NSQIQVWISGAGRLR 75 >gi|31793800|ref|NP_856293.1| hypothetical protein Mb2647 [Mycobacterium bovis AF2122/97] gi|31619394|emb|CAD94832.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97] Length=75 Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 73/75 (98%), Positives = 74/75 (99%), Gaps = 0/75 (0%) Query 1 VGDRYRAGDRVLYGGSMSPKDVDDLATQQDVDDGQSIERRWTGSGQRRWRRSPPTGRYRS 60 +GDRYRAGDRVLYGGSMSPKDVDDLATQQDVDDGQSIERRWTGSGQRRWRRSPPTG YRS Sbjct 1 MGDRYRAGDRVLYGGSMSPKDVDDLATQQDVDDGQSIERRWTGSGQRRWRRSPPTGHYRS 60 Query 61 NSQIQVWISGAGRLR 75 NSQIQVWISGAGRLR Sbjct 61 NSQIQVWISGAGRLR 75 >gi|340627633|ref|YP_004746085.1| hypothetical protein MCAN_26581 [Mycobacterium canettii CIPT 140010059] gi|340005823|emb|CCC44989.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059] Length=75 Score = 143 bits (361), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 73/75 (98%), Positives = 74/75 (99%), Gaps = 0/75 (0%) Query 1 VGDRYRAGDRVLYGGSMSPKDVDDLATQQDVDDGQSIERRWTGSGQRRWRRSPPTGRYRS 60 +GDRYRAGDRVLYGGSMSPKDVDDLATQQDVDDGQSIERRWTGSG RRWRRSPPTGRYRS Sbjct 1 MGDRYRAGDRVLYGGSMSPKDVDDLATQQDVDDGQSIERRWTGSGPRRWRRSPPTGRYRS 60 Query 61 NSQIQVWISGAGRLR 75 NSQIQVWISGAGRLR Sbjct 61 NSQIQVWISGAGRLR 75 >gi|313659554|ref|ZP_07816434.1| hypothetical protein MtubKV_14089 [Mycobacterium tuberculosis KZN V2475] Length=65 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 64/65 (99%), Positives = 65/65 (100%), Gaps = 0/65 (0%) Query 11 VLYGGSMSPKDVDDLATQQDVDDGQSIERRWTGSGQRRWRRSPPTGRYRSNSQIQVWISG 70 +LYGGSMSPKDVDDLATQQDVDDGQSIERRWTGSGQRRWRRSPPTGRYRSNSQIQVWISG Sbjct 1 MLYGGSMSPKDVDDLATQQDVDDGQSIERRWTGSGQRRWRRSPPTGRYRSNSQIQVWISG 60 Query 71 AGRLR 75 AGRLR Sbjct 61 AGRLR 65 >gi|294056518|ref|YP_003550176.1| triosephosphate isomerase [Coraliomargarita akajimensis DSM 45221] gi|293615851|gb|ADE56006.1| triosephosphate isomerase [Coraliomargarita akajimensis DSM 45221] Length=255 Score = 39.3 bits (90), Expect = 0.22, Method: Composition-based stats. Identities = 14/25 (56%), Positives = 20/25 (80%), Gaps = 0/25 (0%) Query 10 RVLYGGSMSPKDVDDLATQQDVDDG 34 R+LYGGSM P++ DDL Q+++D G Sbjct 208 RILYGGSMKPENADDLLAQKNIDGG 232 >gi|296140237|ref|YP_003647480.1| triosephosphate isomerase [Tsukamurella paurometabola DSM 20162] gi|296028371|gb|ADG79141.1| triosephosphate isomerase [Tsukamurella paurometabola DSM 20162] Length=260 Score = 38.5 bits (88), Expect = 0.32, Method: Composition-based stats. Identities = 18/28 (65%), Positives = 21/28 (75%), Gaps = 0/28 (0%) Query 7 AGDRVLYGGSMSPKDVDDLATQQDVDDG 34 AG RVLYGGS+S K+V +L Q DVD G Sbjct 209 AGIRVLYGGSVSSKNVGELVAQPDVDGG 236 >gi|182415633|ref|YP_001820699.1| Triose-phosphate isomerase [Opitutus terrae PB90-1] gi|177842847|gb|ACB77099.1| Triose-phosphate isomerase [Opitutus terrae PB90-1] Length=256 Score = 38.5 bits (88), Expect = 0.34, Method: Composition-based stats. Identities = 16/33 (49%), Positives = 21/33 (64%), Gaps = 0/33 (0%) Query 2 GDRYRAGDRVLYGGSMSPKDVDDLATQQDVDDG 34 GD A R+LYGGSM P + +L Q+D+D G Sbjct 201 GDAIAAKVRILYGGSMKPSNAPELLAQKDIDGG 233 >gi|296411954|ref|XP_002835693.1| hypothetical protein [Tuber melanosporum Mel28] gi|295629482|emb|CAZ79850.1| unnamed protein product [Tuber melanosporum] Length=274 Score = 38.1 bits (87), Expect = 0.43, Method: Composition-based stats. Identities = 17/32 (54%), Positives = 23/32 (72%), Gaps = 0/32 (0%) Query 1 VGDRYRAGDRVLYGGSMSPKDVDDLATQQDVD 32 V D+ G R+LYGGS++ K+ +LATQ DVD Sbjct 222 VSDKAAEGTRILYGGSVTDKNSKELATQPDVD 253 >gi|254442740|ref|ZP_05056216.1| triosephosphate isomerase [Verrucomicrobiae bacterium DG1235] gi|198257048|gb|EDY81356.1| triosephosphate isomerase [Verrucomicrobiae bacterium DG1235] Length=255 Score = 38.1 bits (87), Expect = 0.47, Method: Composition-based stats. Identities = 14/25 (56%), Positives = 19/25 (76%), Gaps = 0/25 (0%) Query 10 RVLYGGSMSPKDVDDLATQQDVDDG 34 R+LYGGSM P + D+L Q+D+D G Sbjct 208 RILYGGSMKPANADELLAQKDIDGG 232 >gi|224002643|ref|XP_002290993.1| triose-phosphate isomerase [Thalassiosira pseudonana CCMP1335] gi|220972769|gb|EED91100.1| triose-phosphate isomerase [Thalassiosira pseudonana CCMP1335] Length=281 Score = 37.4 bits (85), Expect = 0.73, Method: Composition-based stats. Identities = 14/25 (56%), Positives = 21/25 (84%), Gaps = 0/25 (0%) Query 8 GDRVLYGGSMSPKDVDDLATQQDVD 32 G R+LYGGS++P VD+L +Q+D+D Sbjct 233 GVRILYGGSVTPDSVDELMSQEDID 257 >gi|240173321|ref|ZP_04751979.1| triosephosphate isomerase [Mycobacterium kansasii ATCC 12478] Length=261 Score = 37.0 bits (84), Expect = 0.88, Method: Composition-based stats. Identities = 16/25 (64%), Positives = 19/25 (76%), Gaps = 0/25 (0%) Query 10 RVLYGGSMSPKDVDDLATQQDVDDG 34 RVLYGGSM+ K+V DL Q D+D G Sbjct 212 RVLYGGSMNAKNVADLVAQDDIDGG 236 >gi|85091767|ref|XP_959063.1| triosephosphate isomerase [Neurospora crassa OR74A] gi|52783452|sp|Q7S2Z9.1|TPIS_NEUCR RecName: Full=Triosephosphate isomerase; Short=TIM; AltName: Full=Triose-phosphate isomerase gi|28920460|gb|EAA29827.1| triosephosphate isomerase [Neurospora crassa OR74A] gi|336470125|gb|EGO58287.1| Triosephosphate isomerase [Neurospora tetrasperma FGSC 2508] Length=248 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 15/32 (47%), Positives = 22/32 (69%), Gaps = 0/32 (0%) Query 1 VGDRYRAGDRVLYGGSMSPKDVDDLATQQDVD 32 V D+ R+LYGGS++ K+ DLA +QD+D Sbjct 196 VSDKVAEETRILYGGSVNAKNCKDLAKEQDID 227 >gi|225159336|ref|ZP_03725634.1| Triose-phosphate isomerase [Opitutaceae bacterium TAV2] gi|224802090|gb|EEG20364.1| Triose-phosphate isomerase [Opitutaceae bacterium TAV2] Length=256 Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 15/33 (46%), Positives = 20/33 (61%), Gaps = 0/33 (0%) Query 2 GDRYRAGDRVLYGGSMSPKDVDDLATQQDVDDG 34 GD R+LYGGSM P + +L Q+D+D G Sbjct 201 GDAIAQKVRILYGGSMKPSNAPELLAQKDIDGG 233 >gi|15827221|ref|NP_301484.1| triosephosphate isomerase [Mycobacterium leprae TN] gi|221229699|ref|YP_002503115.1| triosephosphate isomerase [Mycobacterium leprae Br4923] gi|1174747|sp|P46711.1|TPIS_MYCLE RecName: Full=Triosephosphate isomerase; Short=TIM; AltName: Full=Triose-phosphate isomerase gi|466870|gb|AAA17115.1| tpiA [Mycobacterium leprae] gi|13092770|emb|CAC30080.1| triosephosphate isomerase [Mycobacterium leprae] gi|219932806|emb|CAR70665.1| triosephosphate isomerase [Mycobacterium leprae Br4923] Length=261 Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust. Identities = 15/25 (60%), Positives = 20/25 (80%), Gaps = 0/25 (0%) Query 10 RVLYGGSMSPKDVDDLATQQDVDDG 34 RVLYGGS++ K++ D+ QQDVD G Sbjct 212 RVLYGGSLNAKNIGDIVAQQDVDGG 236 >gi|302922857|ref|XP_003053553.1| hypothetical protein NECHADRAFT_57390 [Nectria haematococca mpVI 77-13-4] gi|256734494|gb|EEU47840.1| hypothetical protein NECHADRAFT_57390 [Nectria haematococca mpVI 77-13-4] Length=1071 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 18/62 (30%), Positives = 30/62 (49%), Gaps = 0/62 (0%) Query 6 RAGDRVLYGGSMSPKDVDDLATQQDVDDGQSIERRWTGSGQRRWRRSPPTGRYRSNSQIQ 65 R G L + SP+++D L++ D+DDG +E R+ PPT R + + Q Sbjct 708 RGGSAALLDQNNSPQELDPLSSPNDIDDGTPVEGAINNESFRQDIPMPPTSRLPAEFECQ 767 Query 66 VW 67 + Sbjct 768 LC 769 >gi|83858360|ref|ZP_00951882.1| Triosephosphate isomerase [Oceanicaulis alexandrii HTCC2633] gi|83853183|gb|EAP91035.1| Triosephosphate isomerase [Oceanicaulis alexandrii HTCC2633] Length=245 Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust. Identities = 14/25 (56%), Positives = 19/25 (76%), Gaps = 0/25 (0%) Query 10 RVLYGGSMSPKDVDDLATQQDVDDG 34 R+LYGGSM+P + D L +Q D+D G Sbjct 201 RILYGGSMNPANADALLSQSDIDGG 225 >gi|51243952|ref|YP_063836.1| triosephosphate isomerase [Desulfotalea psychrophila LSv54] gi|50874989|emb|CAG34829.1| probable triosephosphate isomerase [Desulfotalea psychrophila LSv54] Length=251 Score = 36.2 bits (82), Expect = 1.8, Method: Composition-based stats. Identities = 14/25 (56%), Positives = 20/25 (80%), Gaps = 0/25 (0%) Query 8 GDRVLYGGSMSPKDVDDLATQQDVD 32 G R+LYGGS+ +VD+L +QQD+D Sbjct 206 GLRILYGGSVKATNVDELMSQQDID 230 >gi|340959548|gb|EGS20729.1| triosephosphate isomerase-like protein [Chaetomium thermophilum var. thermophilum DSM 1495] Length=250 Score = 35.4 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 14/23 (61%), Positives = 19/23 (83%), Gaps = 0/23 (0%) Query 10 RVLYGGSMSPKDVDDLATQQDVD 32 R+LYGGS++ K+ DLA QQD+D Sbjct 207 RILYGGSVNAKNCKDLAKQQDID 229 >gi|229493464|ref|ZP_04387249.1| triose-phosphate isomerase [Rhodococcus erythropolis SK121] gi|229319425|gb|EEN85261.1| triose-phosphate isomerase [Rhodococcus erythropolis SK121] Length=261 Score = 35.4 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 16/26 (62%), Positives = 20/26 (77%), Gaps = 0/26 (0%) Query 7 AGDRVLYGGSMSPKDVDDLATQQDVD 32 AG RVLYGGS+S K+V ++ Q DVD Sbjct 209 AGVRVLYGGSVSSKNVGEIVGQTDVD 234 >gi|226306518|ref|YP_002766478.1| triose-phosphate isomerase [Rhodococcus erythropolis PR4] gi|226185635|dbj|BAH33739.1| triose-phosphate isomerase [Rhodococcus erythropolis PR4] Length=261 Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 16/26 (62%), Positives = 20/26 (77%), Gaps = 0/26 (0%) Query 7 AGDRVLYGGSMSPKDVDDLATQQDVD 32 AG RVLYGGS+S K+V ++ Q DVD Sbjct 209 AGVRVLYGGSVSSKNVGEIVGQTDVD 234 >gi|320355229|ref|YP_004196568.1| triosephosphate isomerase [Desulfobulbus propionicus DSM 2032] gi|320123731|gb|ADW19277.1| triosephosphate isomerase [Desulfobulbus propionicus DSM 2032] Length=251 Score = 35.4 bits (80), Expect = 2.9, Method: Composition-based stats. Identities = 13/23 (57%), Positives = 18/23 (79%), Gaps = 0/23 (0%) Query 10 RVLYGGSMSPKDVDDLATQQDVD 32 R+LYGGS+ P ++DDL Q D+D Sbjct 208 RILYGGSVKPDNIDDLMAQPDID 230 >gi|116749490|ref|YP_846177.1| Triose-phosphate isomerase [Syntrophobacter fumaroxidans MPOB] gi|116698554|gb|ABK17742.1| triosephosphate isomerase [Syntrophobacter fumaroxidans MPOB] Length=254 Score = 35.0 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 22/49 (45%), Positives = 27/49 (56%), Gaps = 7/49 (14%) Query 10 RVLYGGSMSPKDVDDLATQQDVD----DGQSIERRWTGSGQRRWRRSPP 54 R+LYGGS+ P +VD L Q DVD G S+E GS +R R P Sbjct 209 RILYGGSVKPDNVDSLMAQPDVDGLLVGGASLE---VGSFKRIIRFVSP 254 >gi|189485315|ref|YP_001956256.1| triosephosphate isomerase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|229557950|sp|B1GZW3.1|TPIS_UNCTG RecName: Full=Triosephosphate isomerase; Short=TIM; AltName: Full=Triose-phosphate isomerase gi|170287274|dbj|BAG13795.1| triosephosphate isomerase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length=250 Score = 35.0 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 0/25 (0%) Query 10 RVLYGGSMSPKDVDDLATQQDVDDG 34 R+LYGGS++P +V DL + D+D G Sbjct 206 RILYGGSVNPGNVSDLMKKSDIDGG 230 >gi|219112703|ref|XP_002178103.1| triosephosphate isomerase [Phaeodactylum tricornutum CCAP 1055/1] gi|217410988|gb|EEC50917.1| triosephosphate isomerase [Phaeodactylum tricornutum CCAP 1055/1] Length=290 Score = 35.0 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 13/23 (57%), Positives = 18/23 (79%), Gaps = 0/23 (0%) Query 10 RVLYGGSMSPKDVDDLATQQDVD 32 R+LYGGS++P+ VDDL D+D Sbjct 245 RILYGGSVTPESVDDLMAMPDID 267 >gi|108804825|ref|YP_644762.1| triosephosphate isomerase [Rubrobacter xylanophilus DSM 9941] gi|123368052|sp|Q1AUH8.1|TPIS_RUBXD RecName: Full=Triosephosphate isomerase; Short=TIM; AltName: Full=Triose-phosphate isomerase gi|108766068|gb|ABG04950.1| triosephosphate isomerase [Rubrobacter xylanophilus DSM 9941] Length=256 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 13/33 (40%), Positives = 23/33 (70%), Gaps = 0/33 (0%) Query 2 GDRYRAGDRVLYGGSMSPKDVDDLATQQDVDDG 34 G+ + R+LYGGS+ P+++ ++ Q+DVD G Sbjct 203 GEGFAEEARLLYGGSIKPENISEIMAQKDVDGG 235 >gi|325279824|ref|YP_004252366.1| triosephosphate isomerase [Odoribacter splanchnicus DSM 20712] gi|324311633|gb|ADY32186.1| triosephosphate isomerase [Odoribacter splanchnicus DSM 20712] Length=255 Score = 35.0 bits (79), Expect = 3.9, Method: Composition-based stats. Identities = 14/24 (59%), Positives = 18/24 (75%), Gaps = 0/24 (0%) Query 11 VLYGGSMSPKDVDDLATQQDVDDG 34 +LYGGS +PK+ D+L Q DVD G Sbjct 210 ILYGGSCNPKNADELFCQADVDGG 233 >gi|219111901|ref|XP_002177702.1| triosephosphate isomerase [Phaeodactylum tricornutum CCAP 1055/1] gi|217410587|gb|EEC50516.1| triosephosphate isomerase [Phaeodactylum tricornutum CCAP 1055/1] Length=298 Score = 35.0 bits (79), Expect = 4.0, Method: Composition-based stats. Identities = 14/31 (46%), Positives = 21/31 (68%), Gaps = 0/31 (0%) Query 2 GDRYRAGDRVLYGGSMSPKDVDDLATQQDVD 32 G++ R+LYGGS+SP+ VD L + D+D Sbjct 239 GEQVANDTRILYGGSVSPESVDGLLAKPDID 269 >gi|261339301|ref|ZP_05967159.1| hypothetical protein ENTCAN_05542 [Enterobacter cancerogenus ATCC 35316] gi|288319161|gb|EFC58099.1| FAD-dependent oxidoreductase [Enterobacter cancerogenus ATCC 35316] Length=426 Score = 35.0 bits (79), Expect = 4.1, Method: Compositional matrix adjust. Identities = 26/79 (33%), Positives = 36/79 (46%), Gaps = 10/79 (12%) Query 4 RYRAGDRVLYGGSMS-----PKDVDDLATQQDVD-----DGQSIERRWTGSGQRRWRRSP 53 R A +R+LYGG + P+DV+ L + + +G I+ RWTG+ R P Sbjct 289 RLTADNRLLYGGGVVYGARDPEDVERLVMPKLLKTFPQLEGVKIDYRWTGNFLLTLSRMP 348 Query 54 PTGRYRSNSQIQVWISGAG 72 GR SN SG G Sbjct 349 QFGRLDSNIYYMQGYSGHG 367 >gi|325000370|ref|ZP_08121482.1| triosephosphate isomerase [Pseudonocardia sp. P1] Length=262 Score = 34.7 bits (78), Expect = 4.5, Method: Composition-based stats. Identities = 15/31 (49%), Positives = 20/31 (65%), Gaps = 0/31 (0%) Query 2 GDRYRAGDRVLYGGSMSPKDVDDLATQQDVD 32 GD AG R+LYGGS+ +V ++ Q DVD Sbjct 205 GDDVAAGARILYGGSVKSSNVGEIVAQTDVD 235 >gi|336268436|ref|XP_003348983.1| hypothetical protein SMAC_02004 [Sordaria macrospora k-hell] gi|289618535|emb|CBI55259.1| unnamed protein product [Sordaria macrospora] Length=250 Score = 34.7 bits (78), Expect = 4.7, Method: Composition-based stats. Identities = 14/32 (44%), Positives = 22/32 (69%), Gaps = 0/32 (0%) Query 1 VGDRYRAGDRVLYGGSMSPKDVDDLATQQDVD 32 V D+ R+LYGGS++ K+ DLA ++D+D Sbjct 198 VSDKVAQETRILYGGSVNAKNCKDLAKEEDID 229 >gi|86740344|ref|YP_480744.1| triosephosphate isomerase [Frankia sp. CcI3] gi|86567206|gb|ABD11015.1| triosephosphate isomerase [Frankia sp. CcI3] Length=308 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 17/33 (52%), Positives = 20/33 (61%), Gaps = 0/33 (0%) Query 2 GDRYRAGDRVLYGGSMSPKDVDDLATQQDVDDG 34 GD AG RVLYGGS+ + +L T DVD G Sbjct 254 GDEIAAGIRVLYGGSVKAANAGELFTMPDVDGG 286 >gi|81157955|dbj|BAE48228.1| triosephosphate isomerase cytoplasmic type [Chlorella pyrenoidosa] Length=251 Score = 34.7 bits (78), Expect = 4.8, Method: Composition-based stats. Identities = 14/26 (54%), Positives = 20/26 (77%), Gaps = 0/26 (0%) Query 7 AGDRVLYGGSMSPKDVDDLATQQDVD 32 A R++YGGS++ K+ DLATQ D+D Sbjct 202 ANTRIIYGGSVTAKNCGDLATQPDID 227 >gi|108799373|ref|YP_639570.1| triosephosphate isomerase [Mycobacterium sp. MCS] gi|119868487|ref|YP_938439.1| triosephosphate isomerase [Mycobacterium sp. KMS] gi|126435030|ref|YP_001070721.1| triosephosphate isomerase [Mycobacterium sp. JLS] 6 more sequence titles Length=261 Score = 34.7 bits (78), Expect = 4.9, Method: Composition-based stats. Identities = 15/26 (58%), Positives = 21/26 (81%), Gaps = 0/26 (0%) Query 7 AGDRVLYGGSMSPKDVDDLATQQDVD 32 AG RVLYGGS++ K+V ++ Q+DVD Sbjct 209 AGIRVLYGGSVNAKNVGEIVAQEDVD 234 >gi|157962882|ref|YP_001502916.1| triosephosphate isomerase [Shewanella pealeana ATCC 700345] gi|189036023|sp|A8H744.1|TPIS_SHEPA RecName: Full=Triosephosphate isomerase; Short=TIM; AltName: Full=Triose-phosphate isomerase gi|157847882|gb|ABV88381.1| Triose-phosphate isomerase [Shewanella pealeana ATCC 700345] Length=260 Score = 34.7 bits (78), Expect = 5.2, Method: Composition-based stats. Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 0/25 (0%) Query 10 RVLYGGSMSPKDVDDLATQQDVDDG 34 R+LYGGS++P + DL Q DVD G Sbjct 214 RILYGGSVTPSNAADLFAQPDVDGG 238 >gi|167625063|ref|YP_001675357.1| triosephosphate isomerase [Shewanella halifaxensis HAW-EB4] gi|189036022|sp|B0TQA6.1|TPIS_SHEHH RecName: Full=Triosephosphate isomerase; Short=TIM; AltName: Full=Triose-phosphate isomerase gi|167355085|gb|ABZ77698.1| Triose-phosphate isomerase [Shewanella halifaxensis HAW-EB4] Length=260 Score = 34.7 bits (78), Expect = 5.2, Method: Composition-based stats. Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 0/25 (0%) Query 10 RVLYGGSMSPKDVDDLATQQDVDDG 34 R+LYGGS++P + DL Q DVD G Sbjct 214 RILYGGSVTPSNAADLFAQPDVDGG 238 >gi|119774094|ref|YP_926834.1| triosephosphate isomerase [Shewanella amazonensis SB2B] gi|160196645|sp|A1S458.1|TPIS_SHEAM RecName: Full=Triosephosphate isomerase; Short=TIM; AltName: Full=Triose-phosphate isomerase gi|119766594|gb|ABL99164.1| triosephosphate isomerase [Shewanella amazonensis SB2B] Length=260 Score = 34.7 bits (78), Expect = 5.4, Method: Composition-based stats. Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 0/25 (0%) Query 10 RVLYGGSMSPKDVDDLATQQDVDDG 34 R+LYGGS++P + DL Q DVD G Sbjct 214 RILYGGSVTPSNAADLFAQPDVDGG 238 >gi|212634070|ref|YP_002310595.1| triosephosphate isomerase [Shewanella piezotolerans WP3] gi|226705949|sp|B8CKG9.1|TPIS_SHEPW RecName: Full=Triosephosphate isomerase; Short=TIM; AltName: Full=Triose-phosphate isomerase gi|212555554|gb|ACJ28008.1| Triosephosphate isomerase [Shewanella piezotolerans WP3] Length=260 Score = 34.3 bits (77), Expect = 5.6, Method: Composition-based stats. Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 0/25 (0%) Query 10 RVLYGGSMSPKDVDDLATQQDVDDG 34 R+LYGGS++P + DL Q DVD G Sbjct 214 RILYGGSVTPSNAADLFAQPDVDGG 238 >gi|24372783|ref|NP_716825.1| triosephosphate isomerase [Shewanella oneidensis MR-1] gi|114046593|ref|YP_737143.1| triosephosphate isomerase [Shewanella sp. MR-7] gi|117919475|ref|YP_868667.1| triosephosphate isomerase [Shewanella sp. ANA-3] 6 more sequence titles Length=260 Score = 34.3 bits (77), Expect = 5.6, Method: Composition-based stats. Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 0/25 (0%) Query 10 RVLYGGSMSPKDVDDLATQQDVDDG 34 R+LYGGS++P + DL Q DVD G Sbjct 214 RILYGGSVTPSNAADLFAQPDVDGG 238 >gi|113969366|ref|YP_733159.1| triosephosphate isomerase [Shewanella sp. MR-4] gi|123029879|sp|Q0HLG5.1|TPIS_SHESM RecName: Full=Triosephosphate isomerase; Short=TIM; AltName: Full=Triose-phosphate isomerase gi|113884050|gb|ABI38102.1| triosephosphate isomerase [Shewanella sp. MR-4] Length=260 Score = 34.3 bits (77), Expect = 5.6, Method: Composition-based stats. Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 0/25 (0%) Query 10 RVLYGGSMSPKDVDDLATQQDVDDG 34 R+LYGGS++P + DL Q DVD G Sbjct 214 RILYGGSVTPSNAADLFAQPDVDGG 238 >gi|300781135|ref|ZP_07090989.1| triose-phosphate isomerase [Corynebacterium genitalium ATCC 33030] gi|300532842|gb|EFK53903.1| triose-phosphate isomerase [Corynebacterium genitalium ATCC 33030] Length=263 Score = 34.3 bits (77), Expect = 6.0, Method: Composition-based stats. Identities = 16/33 (49%), Positives = 20/33 (61%), Gaps = 0/33 (0%) Query 2 GDRYRAGDRVLYGGSMSPKDVDDLATQQDVDDG 34 GD AG R+LYGGS+ + D+ Q DVD G Sbjct 204 GDEVAAGIRILYGGSVKTDTIADIIGQPDVDGG 236 >gi|317491325|ref|ZP_07949761.1| FAD dependent oxidoreductase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920872|gb|EFV42195.1| FAD dependent oxidoreductase [Enterobacteriaceae bacterium 9_2_54FAA] Length=426 Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust. Identities = 28/82 (35%), Positives = 37/82 (46%), Gaps = 12/82 (14%) Query 3 DRYR-AGD-RVLYGGSMS-----PKDVDDLATQQDVD-----DGQSIERRWTGSGQRRWR 50 D YR GD R+LYGG + P D+D+L + + G I+ RWTG+ Sbjct 286 DYYRLTGDNRLLYGGGVVYGARDPDDIDNLIVPKLLKTFPQLKGVKIDYRWTGNFLLTLS 345 Query 51 RSPPTGRYRSNSQIQVWISGAG 72 R P GR +N SG G Sbjct 346 RMPQFGRLENNIYYMQGYSGHG 367 >gi|302410865|ref|XP_003003266.1| triosephosphate isomerase [Verticillium albo-atrum VaMs.102] gi|261358290|gb|EEY20718.1| triosephosphate isomerase [Verticillium albo-atrum VaMs.102] Length=247 Score = 34.3 bits (77), Expect = 6.2, Method: Composition-based stats. Identities = 15/32 (47%), Positives = 21/32 (66%), Gaps = 0/32 (0%) Query 1 VGDRYRAGDRVLYGGSMSPKDVDDLATQQDVD 32 V D+ R+LYGGS+S K+ DLA + D+D Sbjct 195 VSDKVADETRILYGGSVSEKNCKDLAKEADID 226 >gi|294142064|ref|YP_003558042.1| triosephosphate isomerase [Shewanella violacea DSS12] gi|293328533|dbj|BAJ03264.1| triosephosphate isomerase [Shewanella violacea DSS12] Length=260 Score = 34.3 bits (77), Expect = 6.2, Method: Composition-based stats. Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 0/25 (0%) Query 10 RVLYGGSMSPKDVDDLATQQDVDDG 34 R+LYGGS++P + DL Q DVD G Sbjct 214 RILYGGSVTPSNAADLFAQPDVDGG 238 >gi|127513759|ref|YP_001094956.1| Triose-phosphate isomerase [Shewanella loihica PV-4] gi|160196646|sp|A3QGU9.1|TPIS_SHELP RecName: Full=Triosephosphate isomerase; Short=TIM; AltName: Full=Triose-phosphate isomerase gi|126639054|gb|ABO24697.1| triosephosphate isomerase [Shewanella loihica PV-4] Length=260 Score = 34.3 bits (77), Expect = 6.2, Method: Composition-based stats. Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 0/25 (0%) Query 10 RVLYGGSMSPKDVDDLATQQDVDDG 34 R+LYGGS++P + DL Q DVD G Sbjct 214 RILYGGSVTPSNAADLFAQPDVDGG 238 >gi|170727898|ref|YP_001761924.1| triosephosphate isomerase [Shewanella woodyi ATCC 51908] gi|229557895|sp|B1KRR4.1|TPIS_SHEWM RecName: Full=Triosephosphate isomerase; Short=TIM; AltName: Full=Triose-phosphate isomerase gi|169813245|gb|ACA87829.1| Triose-phosphate isomerase [Shewanella woodyi ATCC 51908] Length=260 Score = 34.3 bits (77), Expect = 6.2, Method: Composition-based stats. Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 0/25 (0%) Query 10 RVLYGGSMSPKDVDDLATQQDVDDG 34 R+LYGGS++P + DL Q DVD G Sbjct 214 RILYGGSVTPSNAADLFAQPDVDGG 238 >gi|91792363|ref|YP_562014.1| triosephosphate isomerase [Shewanella denitrificans OS217] gi|123061158|sp|Q12QI5.1|TPIS_SHEDO RecName: Full=Triosephosphate isomerase; Short=TIM; AltName: Full=Triose-phosphate isomerase gi|91714365|gb|ABE54291.1| triosephosphate isomerase [Shewanella denitrificans OS217] Length=260 Score = 34.3 bits (77), Expect = 6.2, Method: Composition-based stats. Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 0/25 (0%) Query 10 RVLYGGSMSPKDVDDLATQQDVDDG 34 R+LYGGS++P + DL Q DVD G Sbjct 214 RILYGGSVTPSNAADLFAQPDVDGG 238 >gi|120597896|ref|YP_962470.1| triosephosphate isomerase [Shewanella sp. W3-18-1] gi|126175443|ref|YP_001051592.1| triosephosphate isomerase [Shewanella baltica OS155] gi|146293932|ref|YP_001184356.1| triosephosphate isomerase [Shewanella putrefaciens CN-32] 22 more sequence titles Length=260 Score = 34.3 bits (77), Expect = 6.2, Method: Composition-based stats. Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 0/25 (0%) Query 10 RVLYGGSMSPKDVDDLATQQDVDDG 34 R+LYGGS++P + DL Q DVD G Sbjct 214 RILYGGSVTPSNAADLFAQPDVDGG 238 >gi|326800441|ref|YP_004318260.1| triosephosphate isomerase [Sphingobacterium sp. 21] gi|326551205|gb|ADZ79590.1| triosephosphate isomerase [Sphingobacterium sp. 21] Length=254 Score = 34.3 bits (77), Expect = 6.7, Method: Composition-based stats. Identities = 14/24 (59%), Positives = 18/24 (75%), Gaps = 0/24 (0%) Query 11 VLYGGSMSPKDVDDLATQQDVDDG 34 VLYGGS +PK+ DL +Q D+D G Sbjct 211 VLYGGSCNPKNAPDLFSQPDIDGG 234 >gi|157376525|ref|YP_001475125.1| Triose-phosphate isomerase [Shewanella sediminis HAW-EB3] gi|189036024|sp|A8FYS4.1|TPIS_SHESH RecName: Full=Triosephosphate isomerase; Short=TIM; AltName: Full=Triose-phosphate isomerase gi|157318899|gb|ABV37997.1| Triose-phosphate isomerase [Shewanella sediminis HAW-EB3] Length=260 Score = 34.3 bits (77), Expect = 6.8, Method: Composition-based stats. Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 0/25 (0%) Query 10 RVLYGGSMSPKDVDDLATQQDVDDG 34 R+LYGGS++P + DL Q DVD G Sbjct 214 RILYGGSVTPSNAADLFAQPDVDGG 238 >gi|118471699|ref|YP_887402.1| triosephosphate isomerase [Mycobacterium smegmatis str. MC2 155] gi|118172986|gb|ABK73882.1| triosephosphate isomerase [Mycobacterium smegmatis str. MC2 155] Length=261 Score = 33.9 bits (76), Expect = 7.4, Method: Composition-based stats. Identities = 15/26 (58%), Positives = 21/26 (81%), Gaps = 0/26 (0%) Query 7 AGDRVLYGGSMSPKDVDDLATQQDVD 32 AG RVLYGGS++ K+V ++ +Q DVD Sbjct 209 AGVRVLYGGSVNAKNVGEIVSQGDVD 234 Lambda K H 0.317 0.135 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 131059142040 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40