BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2617c Length=146 Score E Sequences producing significant alignments: (Bits) Value gi|15609754|ref|NP_217133.1| hypothetical protein Rv2617c [Mycob... 290 4e-77 gi|254551669|ref|ZP_05142116.1| hypothetical protein Mtube_14634... 288 1e-76 gi|342858558|ref|ZP_08715213.1| putative transmembrane protein [... 248 3e-64 gi|240170652|ref|ZP_04749311.1| putative transmembrane protein [... 246 8e-64 gi|254819895|ref|ZP_05224896.1| putative transmembrane protein [... 233 7e-60 gi|333991040|ref|YP_004523654.1| hypothetical protein JDM601_240... 206 6e-52 gi|226363568|ref|YP_002781350.1| hypothetical protein ROP_41580 ... 166 9e-40 gi|111021212|ref|YP_704184.1| hypothetical protein RHA1_ro04235 ... 162 1e-38 gi|119714155|ref|YP_919297.1| hypothetical protein Noca_4851 [No... 148 3e-34 gi|258653789|ref|YP_003202945.1| hypothetical protein Namu_3644 ... 147 3e-34 gi|331698833|ref|YP_004335072.1| DoxX family protein [Pseudonoca... 146 8e-34 gi|111025062|ref|YP_707482.1| hypothetical protein RHA1_ro08280 ... 145 2e-33 gi|119714174|ref|YP_919316.1| hypothetical protein Noca_4871 [No... 145 2e-33 gi|302548958|ref|ZP_07301300.1| tRNA (5-methylaminomethyl-2-thio... 141 4e-32 gi|119717577|ref|YP_924542.1| hypothetical protein Noca_3353 [No... 136 9e-31 gi|134100158|ref|YP_001105819.1| hypothetical protein SACE_3620 ... 135 2e-30 gi|336118442|ref|YP_004573211.1| hypothetical protein MLP_27940 ... 135 2e-30 gi|226359493|ref|YP_002777270.1| hypothetical protein ROP_00780 ... 126 1e-27 gi|289758748|ref|ZP_06518126.1| predicted protein [Mycobacterium... 122 2e-26 gi|116671278|ref|YP_832211.1| putative transmembrane protein [Ar... 118 2e-25 gi|163789153|ref|ZP_02183596.1| tRNA (5-methylaminomethyl-2-thio... 92.4 2e-17 gi|182415511|ref|YP_001820577.1| hypothetical protein Oter_3702 ... 88.2 4e-16 gi|305666690|ref|YP_003862977.1| putative transmembrane protein ... 82.4 2e-14 gi|344203958|ref|YP_004789101.1| hypothetical protein Murru_2644... 77.0 9e-13 gi|260060842|ref|YP_003193922.1| putative transmembrane protein ... 72.8 2e-11 gi|86156893|ref|YP_463678.1| hypothetical protein Adeh_0465 [Ana... 63.9 7e-09 gi|197120915|ref|YP_002132866.1| hypothetical protein AnaeK_0498... 63.5 1e-08 gi|220915612|ref|YP_002490916.1| hypothetical protein A2cp1_0493... 63.2 1e-08 gi|242059337|ref|XP_002458814.1| hypothetical protein SORBIDRAFT... 38.5 0.31 gi|255629460|gb|ACU15076.1| unknown [Glycine max] 38.5 0.33 gi|302761458|ref|XP_002964151.1| hypothetical protein SELMODRAFT... 38.5 0.34 gi|302823004|ref|XP_002993157.1| hypothetical protein SELMODRAFT... 38.5 0.35 gi|255631356|gb|ACU16045.1| unknown [Glycine max] 37.4 0.68 gi|224143977|ref|XP_002325144.1| predicted protein [Populus tric... 37.4 0.73 gi|217075398|gb|ACJ86059.1| unknown [Medicago truncatula] 37.4 0.77 gi|225873337|ref|YP_002754796.1| pyrimidine-nucleoside phosphory... 36.2 1.6 gi|284990717|ref|YP_003409271.1| alcohol dehydrogenase zinc-bind... 35.8 1.9 gi|325265057|ref|ZP_08131784.1| putative antibiotic resistance p... 34.7 5.1 gi|167749824|ref|ZP_02421951.1| hypothetical protein EUBSIR_0079... 34.3 5.6 gi|291531050|emb|CBK96635.1| hypothetical protein EUS_15100 [Eub... 34.3 5.6 gi|291557484|emb|CBL34601.1| hypothetical protein ES1_16650 [Eub... 34.3 5.8 >gi|15609754|ref|NP_217133.1| hypothetical protein Rv2617c [Mycobacterium tuberculosis H37Rv] gi|15842157|ref|NP_337194.1| hypothetical protein MT2692 [Mycobacterium tuberculosis CDC1551] gi|31793803|ref|NP_856296.1| hypothetical protein Mb2650c [Mycobacterium bovis AF2122/97] 76 more sequence titles Length=146 Score = 290 bits (743), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 146/146 (100%), Positives = 146/146 (100%), Gaps = 0/146 (0%) Query 1 MSIRPTTSPALADQLKDPAYSAYVLLRTLFTVAPILFGLDKFFNLLTHPQHWNMYLAGWI 60 MSIRPTTSPALADQLKDPAYSAYVLLRTLFTVAPILFGLDKFFNLLTHPQHWNMYLAGWI Sbjct 1 MSIRPTTSPALADQLKDPAYSAYVLLRTLFTVAPILFGLDKFFNLLTHPQHWNMYLAGWI 60 Query 61 NDLVPGTADQCMYLVGAIEIVAGVLVAVAPRIGAWVVAAWLAGIILNLVTGPGFYDIALR 120 NDLVPGTADQCMYLVGAIEIVAGVLVAVAPRIGAWVVAAWLAGIILNLVTGPGFYDIALR Sbjct 61 NDLVPGTADQCMYLVGAIEIVAGVLVAVAPRIGAWVVAAWLAGIILNLVTGPGFYDIALR 120 Query 121 DFGLLVGAIALARLAQGVHSGGIGRP 146 DFGLLVGAIALARLAQGVHSGGIGRP Sbjct 121 DFGLLVGAIALARLAQGVHSGGIGRP 146 >gi|254551669|ref|ZP_05142116.1| hypothetical protein Mtube_14634 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289762791|ref|ZP_06522169.1| transmembrane protein [Mycobacterium tuberculosis GM 1503] gi|289710297|gb|EFD74313.1| transmembrane protein [Mycobacterium tuberculosis GM 1503] Length=146 Score = 288 bits (738), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 145/146 (99%), Positives = 146/146 (100%), Gaps = 0/146 (0%) Query 1 MSIRPTTSPALADQLKDPAYSAYVLLRTLFTVAPILFGLDKFFNLLTHPQHWNMYLAGWI 60 MSIRPTTSPALADQLKDPAYSAYVLLRTLFTVAPILFGLDKFF+LLTHPQHWNMYLAGWI Sbjct 1 MSIRPTTSPALADQLKDPAYSAYVLLRTLFTVAPILFGLDKFFSLLTHPQHWNMYLAGWI 60 Query 61 NDLVPGTADQCMYLVGAIEIVAGVLVAVAPRIGAWVVAAWLAGIILNLVTGPGFYDIALR 120 NDLVPGTADQCMYLVGAIEIVAGVLVAVAPRIGAWVVAAWLAGIILNLVTGPGFYDIALR Sbjct 61 NDLVPGTADQCMYLVGAIEIVAGVLVAVAPRIGAWVVAAWLAGIILNLVTGPGFYDIALR 120 Query 121 DFGLLVGAIALARLAQGVHSGGIGRP 146 DFGLLVGAIALARLAQGVHSGGIGRP Sbjct 121 DFGLLVGAIALARLAQGVHSGGIGRP 146 >gi|342858558|ref|ZP_08715213.1| putative transmembrane protein [Mycobacterium colombiense CECT 3035] gi|342134262|gb|EGT87442.1| putative transmembrane protein [Mycobacterium colombiense CECT 3035] Length=151 Score = 248 bits (632), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 122/145 (85%), Positives = 135/145 (94%), Gaps = 1/145 (0%) Query 1 MSIRPTTS-PALADQLKDPAYSAYVLLRTLFTVAPILFGLDKFFNLLTHPQHWNMYLAGW 59 MS + T+ PALADQL+DP YSAYV LRT+FT+API+FGLDKFFNLLTHP HW+MYLAGW Sbjct 1 MSTKQVTAAPALADQLRDPGYSAYVALRTVFTIAPIVFGLDKFFNLLTHPHHWSMYLAGW 60 Query 60 INDLVPGTADQCMYLVGAIEIVAGVLVAVAPRIGAWVVAAWLAGIILNLVTGPGFYDIAL 119 INDLVPGTADQCMYLVG IEIVAGVLVAVAPR GAWVVAAWLAGII++LVTGPGFYD+AL Sbjct 61 INDLVPGTADQCMYLVGIIEIVAGVLVAVAPRWGAWVVAAWLAGIIIDLVTGPGFYDVAL 120 Query 120 RDFGLLVGAIALARLAQGVHSGGIG 144 RDFGLLVGA+ALARLAQGVH+G +G Sbjct 121 RDFGLLVGAVALARLAQGVHNGTVG 145 >gi|240170652|ref|ZP_04749311.1| putative transmembrane protein [Mycobacterium kansasii ATCC 12478] Length=151 Score = 246 bits (628), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 118/138 (86%), Positives = 130/138 (95%), Gaps = 0/138 (0%) Query 8 SPALADQLKDPAYSAYVLLRTLFTVAPILFGLDKFFNLLTHPQHWNMYLAGWINDLVPGT 67 +P+ ADQ+KDPAYSAY+LLRT+FTVAPI+FGLDKFFNLLTHP HW+MYLAGWI++LVPGT Sbjct 13 APSFADQVKDPAYSAYLLLRTVFTVAPIVFGLDKFFNLLTHPHHWSMYLAGWIDNLVPGT 72 Query 68 ADQCMYLVGAIEIVAGVLVAVAPRIGAWVVAAWLAGIILNLVTGPGFYDIALRDFGLLVG 127 ADQCMYLVGAIEI AGVLVAV PR GAWVVAAWLAGIIL+LVTGPGFYD+ALRDFGLL G Sbjct 73 ADQCMYLVGAIEIAAGVLVAVVPRFGAWVVAAWLAGIILDLVTGPGFYDVALRDFGLLAG 132 Query 128 AIALARLAQGVHSGGIGR 145 A+ALARLAQGVH G IGR Sbjct 133 AVALARLAQGVHRGSIGR 150 >gi|254819895|ref|ZP_05224896.1| putative transmembrane protein [Mycobacterium intracellulare ATCC 13950] Length=151 Score = 233 bits (594), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 118/140 (85%), Positives = 133/140 (95%), Gaps = 0/140 (0%) Query 6 TTSPALADQLKDPAYSAYVLLRTLFTVAPILFGLDKFFNLLTHPQHWNMYLAGWINDLVP 65 + +P LA+QL+DPAYSAY+ LRT+FT+API+FGLDKFFNLLTHP HW+MYLAGWI+DLVP Sbjct 7 SATPTLAEQLRDPAYSAYLALRTVFTIAPIVFGLDKFFNLLTHPHHWSMYLAGWIDDLVP 66 Query 66 GTADQCMYLVGAIEIVAGVLVAVAPRIGAWVVAAWLAGIILNLVTGPGFYDIALRDFGLL 125 GTADQCMYLVG IEIVAGV+VAVAPR+GAWVVAAWLAGII++LVTGPGFYD+ALRDFGL Sbjct 67 GTADQCMYLVGIIEIVAGVVVAVAPRLGAWVVAAWLAGIIIDLVTGPGFYDVALRDFGLF 126 Query 126 VGAIALARLAQGVHSGGIGR 145 VGAIALARLAQGVHSG IGR Sbjct 127 VGAIALARLAQGVHSGSIGR 146 >gi|333991040|ref|YP_004523654.1| hypothetical protein JDM601_2400 [Mycobacterium sp. JDM601] gi|333487008|gb|AEF36400.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=150 Score = 206 bits (525), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 104/145 (72%), Positives = 118/145 (82%), Gaps = 6/145 (4%) Query 1 MSIRPTTSPALADQLKDPAYSAYVLLRTLFTVAPILFGLDKFFNLLTH------PQHWNM 54 MS S AL+++LKDP + AY LLRTLFTVAPILFGLDKFFNLLTH P HW+ Sbjct 1 MSATNLGSAALSERLKDPLFEAYFLLRTLFTVAPILFGLDKFFNLLTHVPGGAGPSHWDK 60 Query 55 YLAGWINDLVPGTADQCMYLVGAIEIVAGVLVAVAPRIGAWVVAAWLAGIILNLVTGPGF 114 YLAGWIND++PG DQ MYL+G IEIVAGVLVAV PRIGAWVVAAWLAGII++L+T G+ Sbjct 61 YLAGWINDILPGNGDQAMYLIGVIEIVAGVLVAVVPRIGAWVVAAWLAGIIVDLLTLSGY 120 Query 115 YDIALRDFGLLVGAIALARLAQGVH 139 YD+ALRDFGLLV A+ LARLAQ VH Sbjct 121 YDVALRDFGLLVAAVVLARLAQAVH 145 >gi|226363568|ref|YP_002781350.1| hypothetical protein ROP_41580 [Rhodococcus opacus B4] gi|226242057|dbj|BAH52405.1| hypothetical membrane protein [Rhodococcus opacus B4] Length=145 Score = 166 bits (421), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 89/135 (66%), Positives = 105/135 (78%), Gaps = 8/135 (5%) Query 12 ADQLKDPAYSAYVLLRTLFTVAPILFGLDKFFNLLTHPQHWNMYLAGWINDLVPGTADQC 71 + L DP Y A++LLRT+FTVAP+LFGLDKF N LT W YLA WI+DL+PGTA Q Sbjct 13 SHTLSDPGYQAFLLLRTVFTVAPVLFGLDKFTNWLTD---WPDYLAPWIDDLLPGTAQQG 69 Query 72 MYLVGAIEIVAGVLVAVAPRIGAWVVAAWLAGIILNLVTGPGFYDIALRDFGLLVGAIAL 131 MY+VG IE++AG+LVAVAPRIGAWVVAAWLAGII+NL+T G+YD+ALRDFGLL GA+AL Sbjct 70 MYVVGVIEVIAGILVAVAPRIGAWVVAAWLAGIIVNLLTLSGYYDVALRDFGLLAGAVAL 129 Query 132 ARLAQGVHSGGIGRP 146 LA GRP Sbjct 130 GLLA-----AEYGRP 139 >gi|111021212|ref|YP_704184.1| hypothetical protein RHA1_ro04235 [Rhodococcus jostii RHA1] gi|110820742|gb|ABG96026.1| possible membrane protein [Rhodococcus jostii RHA1] Length=145 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 86/124 (70%), Positives = 100/124 (81%), Gaps = 3/124 (2%) Query 12 ADQLKDPAYSAYVLLRTLFTVAPILFGLDKFFNLLTHPQHWNMYLAGWINDLVPGTADQC 71 + L DP Y A+++LRT+FTVAPILFGLDKF N LT W YLA WI+ ++PGTA Q Sbjct 13 SHTLADPGYQAFLVLRTVFTVAPILFGLDKFTNWLTD---WPAYLAPWIDGILPGTAQQG 69 Query 72 MYLVGAIEIVAGVLVAVAPRIGAWVVAAWLAGIILNLVTGPGFYDIALRDFGLLVGAIAL 131 MY VG IE+VAG+LVAVAPRIGAWVVAAWLAGII+NLVT G+YD+ALRDFGLL GA+AL Sbjct 70 MYAVGVIEVVAGILVAVAPRIGAWVVAAWLAGIIVNLVTLSGYYDVALRDFGLLAGAVAL 129 Query 132 ARLA 135 LA Sbjct 130 GLLA 133 >gi|119714155|ref|YP_919297.1| hypothetical protein Noca_4851 [Nocardioides sp. JS614] gi|119526064|gb|ABL79434.1| hypothetical protein Noca_4851 [Nocardioides sp. JS614] Length=163 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 82/134 (62%), Positives = 97/134 (73%), Gaps = 3/134 (2%) Query 2 SIRPTTSPALADQLKDPAYSAYVLLRTLFTVAPILFGLDKFFNLLTHPQHWNMYLAGWIN 61 + P +P A A A++LLRT+FT+API FGLDKF +LT W YLA WIN Sbjct 25 TTNPAGTPVSAGPTGVGAERAFMLLRTVFTIAPIAFGLDKFAEILTD---WEQYLAPWIN 81 Query 62 DLVPGTADQCMYLVGAIEIVAGVLVAVAPRIGAWVVAAWLAGIILNLVTGPGFYDIALRD 121 D+VPG+A Q M VG IEIVAG+ VA+APR GA +VA WLAGII+NLVT +YDIALRD Sbjct 82 DIVPGSAHQAMLSVGVIEIVAGLAVAIAPRYGALLVAGWLAGIIVNLVTMGEYYDIALRD 141 Query 122 FGLLVGAIALARLA 135 FGLLVGA+ALA LA Sbjct 142 FGLLVGALALAVLA 155 >gi|258653789|ref|YP_003202945.1| hypothetical protein Namu_3644 [Nakamurella multipartita DSM 44233] gi|258557014|gb|ACV79956.1| conserved hypothetical protein [Nakamurella multipartita DSM 44233] Length=150 Score = 147 bits (372), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 78/124 (63%), Positives = 94/124 (76%), Gaps = 4/124 (3%) Query 1 MSIRPTTSPAL-ADQLKDPAYSAYVLLRTLFTVAPILFGLDKFFNLLTHPQHWNMYLAGW 59 M+ PT A A QL DPAY A++LLR+ FTVAPI+FGLDKF N+LT W YLA W Sbjct 1 MTTHPTRDRATRAGQLHDPAYQAFLLLRSAFTVAPIVFGLDKFVNVLTD---WPGYLAPW 57 Query 60 INDLVPGTADQCMYLVGAIEIVAGVLVAVAPRIGAWVVAAWLAGIILNLVTGPGFYDIAL 119 ++ LVPGTA Q MY+VG +EI AG+LVAV P IG +VVAAWLAGII+NL+ PGFYD+A+ Sbjct 58 VDSLVPGTAQQVMYVVGVVEIAAGILVAVRPLIGGYVVAAWLAGIIVNLLLIPGFYDVAV 117 Query 120 RDFG 123 RD G Sbjct 118 RDVG 121 >gi|331698833|ref|YP_004335072.1| DoxX family protein [Pseudonocardia dioxanivorans CB1190] gi|326953522|gb|AEA27219.1| DoxX family protein [Pseudonocardia dioxanivorans CB1190] Length=142 Score = 146 bits (369), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 76/108 (71%), Positives = 89/108 (83%), Gaps = 3/108 (2%) Query 15 LKDPAYSAYVLLRTLFTVAPILFGLDKFFNLLTHPQHWNMYLAGWINDLVPGTADQCMYL 74 L DPA+ A++LLRT+FTVAPILFGLDKF NLLT W YLA WI+ ++PG A Q MY Sbjct 13 LADPAHLAFLLLRTVFTVAPILFGLDKFTNLLTD---WPRYLAPWIDGILPGDAQQVMYA 69 Query 75 VGAIEIVAGVLVAVAPRIGAWVVAAWLAGIILNLVTGPGFYDIALRDF 122 VG IEIVAG+LVA APRIGAWVVAAWL GII++L+T PG+YD+ALRDF Sbjct 70 VGVIEIVAGLLVAAAPRIGAWVVAAWLLGIIVDLLTLPGYYDVALRDF 117 >gi|111025062|ref|YP_707482.1| hypothetical protein RHA1_ro08280 [Rhodococcus jostii RHA1] gi|110824041|gb|ABG99324.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=160 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 77/131 (59%), Positives = 95/131 (73%), Gaps = 3/131 (2%) Query 5 PTTSPALADQLKDPAYSAYVLLRTLFTVAPILFGLDKFFNLLTHPQHWNMYLAGWINDLV 64 PT AL DPAY A++LLR FTV PI+ G+DKF N+LT W YLA WI DL Sbjct 13 PTPGTALQRARSDPAYGAFLLLRIGFTVLPIVMGIDKFTNVLTT---WEDYLAPWIVDLS 69 Query 65 PGTADQCMYLVGAIEIVAGVLVAVAPRIGAWVVAAWLAGIILNLVTGPGFYDIALRDFGL 124 P +A Q M +VG IEIVAG+ VA+ PR A++VAAWLAGI++NL++ PGFYDIALRDFGL Sbjct 70 PFSAHQTMLVVGVIEIVAGIAVAIKPRYAAYIVAAWLAGIVINLLSYPGFYDIALRDFGL 129 Query 125 LVGAIALARLA 135 ++ A+ L RLA Sbjct 130 MLAALTLGRLA 140 >gi|119714174|ref|YP_919316.1| hypothetical protein Noca_4871 [Nocardioides sp. JS614] gi|119526083|gb|ABL79453.1| putative membrane protein [Nocardioides sp. JS614] Length=142 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 76/128 (60%), Positives = 95/128 (75%), Gaps = 10/128 (7%) Query 2 SIRPTT------SPALADQLKDPAYSAYVLLRTLFTVAPILFGLDKFFNLLTHPQHWNMY 55 + RPT+ +PA + L DP+Y A LLRT+FTVAPI+FGLDKF N L W+ Y Sbjct 3 TTRPTSHGAAGSTPATRNVL-DPSYQALFLLRTVFTVAPIVFGLDKFTNYLVD---WDNY 58 Query 56 LAGWINDLVPGTADQCMYLVGAIEIVAGVLVAVAPRIGAWVVAAWLAGIILNLVTGPGFY 115 LA W+ND+VPGT Q MY VG IEI+AG++VA+ PR G W+VAAWL GII+NL+T PG+Y Sbjct 59 LAPWVNDIVPGTGTQAMYAVGVIEILAGLVVAIMPRYGGWLVAAWLGGIIVNLLTLPGYY 118 Query 116 DIALRDFG 123 D+ALRDFG Sbjct 119 DVALRDFG 126 >gi|302548958|ref|ZP_07301300.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces viridochromogenes DSM 40736] gi|302466576|gb|EFL29669.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces viridochromogenes DSM 40736] Length=145 Score = 141 bits (355), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 74/124 (60%), Positives = 90/124 (73%), Gaps = 5/124 (4%) Query 2 SIRPTTSPALADQ--LKDPAYSAYVLLRTLFTVAPILFGLDKFFNLLTHPQHWNMYLAGW 59 S T PA++ + DP Y A+ +LR FTVAPILFGLDKF NLL W YLA W Sbjct 3 SATTTPEPAVSRRAAFTDPGYQAFAILRVGFTVAPILFGLDKFANLLVD---WPHYLAPW 59 Query 60 INDLVPGTADQCMYLVGAIEIVAGVLVAVAPRIGAWVVAAWLAGIILNLVTGPGFYDIAL 119 I+D+VPG+A MY VG +EI+AG++VAVAPR G W+VA WLAGII+NL+T P +YDIAL Sbjct 60 IDDVVPGSAQTAMYAVGVVEILAGLVVAVAPRFGGWLVAGWLAGIIVNLLTIPDYYDIAL 119 Query 120 RDFG 123 RDFG Sbjct 120 RDFG 123 >gi|119717577|ref|YP_924542.1| hypothetical protein Noca_3353 [Nocardioides sp. JS614] gi|119538238|gb|ABL82855.1| putative membrane protein [Nocardioides sp. JS614] Length=146 Score = 136 bits (343), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 73/120 (61%), Positives = 89/120 (75%), Gaps = 3/120 (2%) Query 7 TSPALADQLKDPAYSAYVLLRTLFTVAPILFGLDKFFNLLTHPQHWNMYLAGWINDLVPG 66 TS L A+ AY+LLRT+FT+API FGLDKF LT W+ YLA WIND+VPG Sbjct 11 TSDVTTTALDPGAHRAYLLLRTVFTIAPIAFGLDKFLGWLTD---WDDYLAPWINDIVPG 67 Query 67 TADQCMYLVGAIEIVAGVLVAVAPRIGAWVVAAWLAGIILNLVTGPGFYDIALRDFGLLV 126 +A M +VG IE+VAGVLVA+APR+G +VVA WLAGII++LV+ +YDIALRDFGL V Sbjct 68 SAHDAMLMVGVIEVVAGVLVALAPRLGGYVVALWLAGIIVDLVSMQDYYDIALRDFGLFV 127 >gi|134100158|ref|YP_001105819.1| hypothetical protein SACE_3620 [Saccharopolyspora erythraea NRRL 2338] gi|291008234|ref|ZP_06566207.1| hypothetical protein SeryN2_27256 [Saccharopolyspora erythraea NRRL 2338] gi|133912781|emb|CAM02894.1| hypothetical protein SACE_3620 [Saccharopolyspora erythraea NRRL 2338] Length=156 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 73/122 (60%), Positives = 88/122 (73%), Gaps = 3/122 (2%) Query 16 KDPAYSAYVLLRTLFTVAPILFGLDKFFNLLTHPQHWNMYLAGWINDLVPGTADQCMYLV 75 +PAY AY+LLR FTV P++FG+DKF N+LT W YLA WI +P TA Q M V Sbjct 24 TEPAYGAYLLLRVGFTVLPVVFGVDKFVNVLTD---WQHYLAPWIVTFLPITAHQAMLAV 80 Query 76 GAIEIVAGVLVAVAPRIGAWVVAAWLAGIILNLVTGPGFYDIALRDFGLLVGAIALARLA 135 GAIEI AG+ VAV PR A +VAAWLAGI++NL+T PGF+DIALRD GLL GA+ L LA Sbjct 81 GAIEIAAGLAVAVKPRYAALIVAAWLAGIVINLLTYPGFFDIALRDVGLLAGALTLTCLA 140 Query 136 QG 137 + Sbjct 141 RS 142 >gi|336118442|ref|YP_004573211.1| hypothetical protein MLP_27940 [Microlunatus phosphovorus NM-1] gi|334686223|dbj|BAK35808.1| hypothetical protein MLP_27940 [Microlunatus phosphovorus NM-1] Length=142 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 75/125 (60%), Positives = 90/125 (72%), Gaps = 5/125 (4%) Query 1 MSIRPTTSPALADQLKDP--AYSAYVLLRTLFTVAPILFGLDKFFNLLTHPQHWNMYLAG 58 MS +T PA L + A A+ LLRT+F +API FGLDKFF++LT W+ YLA Sbjct 1 MSTSTSTRPAGISLLTNGSGADRAFFLLRTVFVIAPIAFGLDKFFDILTE---WDGYLAP 57 Query 59 WINDLVPGTADQCMYLVGAIEIVAGVLVAVAPRIGAWVVAAWLAGIILNLVTGPGFYDIA 118 WIN++VPG A Q M +VG IEIVAG+ VA+APR GA +VAAWL GIILNLVT FYD+A Sbjct 58 WINNIVPGNAHQAMLVVGVIEIVAGLAVAIAPRFGALLVAAWLGGIILNLVTMGEFYDVA 117 Query 119 LRDFG 123 LRDFG Sbjct 118 LRDFG 122 >gi|226359493|ref|YP_002777270.1| hypothetical protein ROP_00780 [Rhodococcus opacus B4] gi|226237977|dbj|BAH48325.1| hypothetical membrane protein [Rhodococcus opacus B4] Length=160 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 75/131 (58%), Positives = 94/131 (72%), Gaps = 3/131 (2%) Query 5 PTTSPALADQLKDPAYSAYVLLRTLFTVAPILFGLDKFFNLLTHPQHWNMYLAGWINDLV 64 PT AL DPAY A++LLR FTV PI+ G+DKF N+LT W YLA WI DL Sbjct 13 PTPGTALQRARSDPAYGAFLLLRIGFTVLPIVMGIDKFTNVLTT---WEDYLAPWIVDLS 69 Query 65 PGTADQCMYLVGAIEIVAGVLVAVAPRIGAWVVAAWLAGIILNLVTGPGFYDIALRDFGL 124 P +A Q M +VG IEIV G+ VA+ PR A++VAAWLAGI++NL++ PGFYD+ALRDFGL Sbjct 70 PFSAHQTMLVVGVIEIVVGIAVAIKPRYAAYIVAAWLAGIVINLLSYPGFYDVALRDFGL 129 Query 125 LVGAIALARLA 135 ++ A+ L RLA Sbjct 130 MLAALTLGRLA 140 >gi|289758748|ref|ZP_06518126.1| predicted protein [Mycobacterium tuberculosis T85] gi|289714312|gb|EFD78324.1| predicted protein [Mycobacterium tuberculosis T85] Length=58 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 58/58 (100%), Positives = 58/58 (100%), Gaps = 0/58 (0%) Query 1 MSIRPTTSPALADQLKDPAYSAYVLLRTLFTVAPILFGLDKFFNLLTHPQHWNMYLAG 58 MSIRPTTSPALADQLKDPAYSAYVLLRTLFTVAPILFGLDKFFNLLTHPQHWNMYLAG Sbjct 1 MSIRPTTSPALADQLKDPAYSAYVLLRTLFTVAPILFGLDKFFNLLTHPQHWNMYLAG 58 >gi|116671278|ref|YP_832211.1| putative transmembrane protein [Arthrobacter sp. FB24] gi|116611387|gb|ABK04111.1| putative transmembrane protein [Arthrobacter sp. FB24] Length=139 Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 68/120 (57%), Positives = 87/120 (73%), Gaps = 3/120 (2%) Query 16 KDPAYSAYVLLRTLFTVAPILFGLDKFFNLLTHPQHWNMYLAGWINDLVPGTADQCMYLV 75 +P A++LLRT+FTVAP++FGLDKF NLL W MYLA +VP A MY+V Sbjct 16 SEPGRQAFLLLRTVFTVAPVIFGLDKFTNLLAD---WTMYLAPVATAVVPLPAQTIMYIV 72 Query 76 GAIEIVAGVLVAVAPRIGAWVVAAWLAGIILNLVTGPGFYDIALRDFGLLVGAIALARLA 135 G +E+VAG+ VAV PR G+ +VA WL GII+NL+ F+D+ALRDFGLLVGA+AL RL+ Sbjct 73 GVVEVVAGIAVAVRPRFGSILVAVWLLGIIINLLLLGSFFDVALRDFGLLVGALALNRLS 132 >gi|163789153|ref|ZP_02183596.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Flavobacteriales bacterium ALC-1] gi|159875566|gb|EDP69627.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Flavobacteriales bacterium ALC-1] Length=127 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/118 (39%), Positives = 74/118 (63%), Gaps = 3/118 (2%) Query 25 LLRTLFTVAPILFGLDKFFNLLTHPQHWNMYLAGWINDLVPGTADQCMYLVGAIEIVAGV 84 +L+ F++ PI+ GLDKF NLLT+ W+ Y++ +++P M +VG IEI+AG+ Sbjct 11 VLKYTFSLVPIVAGLDKFTNLLTN---WSQYISEGFANILPFEPSTFMMIVGVIEIIAGI 67 Query 85 LVAVAPRIGAWVVAAWLAGIILNLVTGPGFYDIALRDFGLLVGAIALARLAQGVHSGG 142 LV +IGA+VV+ WL I L L+ + D+A+RD + + A +LA+L++ HS Sbjct 68 LVLTKTKIGAYVVSGWLVAIALTLIFSWSYVDVAVRDLVMAIAAFSLAKLSKNSHSKA 125 >gi|182415511|ref|YP_001820577.1| hypothetical protein Oter_3702 [Opitutus terrae PB90-1] gi|177842725|gb|ACB76977.1| hypothetical protein Oter_3702 [Opitutus terrae PB90-1] Length=146 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 60/135 (45%), Positives = 81/135 (60%), Gaps = 9/135 (6%) Query 2 SIRPTTS-PALADQLKDPAYSAYVLLRTLFTVAPILFGLDKFFNLLTHPQHWNMYLAGWI 60 SI P+++ PA + ++ + L+ LFT PI+ GLDKF NLL + W YL Sbjct 6 SIHPSSTLPAE----HNVVHTTQLTLKILFTAVPIVAGLDKFTNLLAN---WETYLNPLA 58 Query 61 NDLVPGTADQCMYLVGAIEIVAGVLVAVAPRIGAWVVAAWLAGIILNLVTGPGFYDIALR 120 +VP +A M +VG IEI+AG+LV + PRIG VVAAWL I L L+ F D+A+R Sbjct 59 LRIVPVSAATFMGIVGVIEIIAGILVFLKPRIGGLVVAAWLIAISLQLILWGRFLDVAVR 118 Query 121 DFGL-LVGAIALARL 134 D + L GA+ LARL Sbjct 119 DIVIALGGALTLARL 133 >gi|305666690|ref|YP_003862977.1| putative transmembrane protein [Maribacter sp. HTCC2170] gi|88708914|gb|EAR01148.1| probable transmembrane protein [Maribacter sp. HTCC2170] Length=125 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 48/122 (40%), Positives = 72/122 (60%), Gaps = 3/122 (2%) Query 15 LKDPAYSAYVLLRTLFTVAPILFGLDKFFNLLTHPQHWNMYLAGWINDLVPGTADQCMYL 74 +K+ +L+ + + PI+ G DKF LLT W Y++ + +++P + M + Sbjct 1 MKENVQLVKTILKYTYGLVPIIAGADKFTGLLTD---WGKYVSNGLIEMLPFGTEAFMMI 57 Query 75 VGAIEIVAGVLVAVAPRIGAWVVAAWLAGIILNLVTGPGFYDIALRDFGLLVGAIALARL 134 VGAIEI+AGVLV + PRIGA VV WL I L L+ F D+A+RD + VGA ++A L Sbjct 58 VGAIEIIAGVLVLLKPRIGALVVMGWLVAIALTLLFSWSFIDVAIRDLVMAVGAFSMAIL 117 Query 135 AQ 136 + Sbjct 118 FK 119 >gi|344203958|ref|YP_004789101.1| hypothetical protein Murru_2644 [Muricauda ruestringensis DSM 13258] gi|343955880|gb|AEM71679.1| putative transmembrane protein [Muricauda ruestringensis DSM 13258] Length=120 Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 43/112 (39%), Positives = 69/112 (62%), Gaps = 3/112 (2%) Query 25 LLRTLFTVAPILFGLDKFFNLLTHPQHWNMYLAGWINDLVPGTADQCMYLVGAIEIVAGV 84 LL+ F + PI+ GLDKF N+LT W+ Y++ + +L+P M +G IEI AG+ Sbjct 12 LLKYTFGIVPIVAGLDKFTNVLTD---WSQYMSTGLVELLPVDIGIFMGTIGVIEIAAGI 68 Query 85 LVAVAPRIGAWVVAAWLAGIILNLVTGPGFYDIALRDFGLLVGAIALARLAQ 136 +V V P+IG ++VA WL I L L+ D+A+RD + + A++L +L++ Sbjct 69 VVLVRPQIGGYIVALWLVLIALVLIVTGNHLDVAVRDLVMAIAALSLVKLSE 120 >gi|260060842|ref|YP_003193922.1| putative transmembrane protein [Robiginitalea biformata HTCC2501] gi|88784972|gb|EAR16141.1| probable transmembrane protein [Robiginitalea biformata HTCC2501] Length=109 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/111 (44%), Positives = 69/111 (63%), Gaps = 3/111 (2%) Query 26 LRTLFTVAPILFGLDKFFNLLTHPQHWNMYLAGWINDLVPGTADQCMYLVGAIEIVAGVL 85 ++ F + PI+ GLDKF N+LT W+ Y++ + DL+P A M +VG +EI AG L Sbjct 1 MQYTFGLVPIVAGLDKFTNILTD---WSQYVSAGLLDLIPVEAGVFMSVVGIVEIAAGAL 57 Query 86 VAVAPRIGAWVVAAWLAGIILNLVTGPGFYDIALRDFGLLVGAIALARLAQ 136 V + P IG VVAAWL I L+L+ F D+A+RD + VGA +L L++ Sbjct 58 VLLRPMIGGIVVAAWLVLIALSLLLTWSFVDVAVRDLVMAVGAFSLVTLSR 108 >gi|86156893|ref|YP_463678.1| hypothetical protein Adeh_0465 [Anaeromyxobacter dehalogenans 2CP-C] gi|85773404|gb|ABC80241.1| hypothetical protein Adeh_0465 [Anaeromyxobacter dehalogenans 2CP-C] Length=153 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 42/101 (42%), Positives = 53/101 (53%), Gaps = 4/101 (3%) Query 22 AYVLLRTLFTVAPILFGLDKFFNLLTHPQHWNMYLAGWINDLVPGTADQCMYLVGAIEIV 81 AY LR V PI+ GLDKF NLL W YL+ L+P + M G IE++ Sbjct 13 AYWALRIALGVVPIVAGLDKFTNLLAD---WAGYLSPLAVRLLPVSPAAFMRAAGVIEVI 69 Query 82 AGV-LVAVAPRIGAWVVAAWLAGIILNLVTGPGFYDIALRD 121 G+ ++A R W+ AWLA I LNLV F D+A RD Sbjct 70 VGIGILAGRARTFGWIAMAWLAAIALNLVASGAFLDVAARD 110 >gi|197120915|ref|YP_002132866.1| hypothetical protein AnaeK_0498 [Anaeromyxobacter sp. K] gi|196170764|gb|ACG71737.1| conserved hypothetical protein [Anaeromyxobacter sp. K] Length=155 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/101 (41%), Positives = 53/101 (53%), Gaps = 4/101 (3%) Query 22 AYVLLRTLFTVAPILFGLDKFFNLLTHPQHWNMYLAGWINDLVPGTADQCMYLVGAIEIV 81 AY LR V PI+ GLDKF NLL W YL+ L+P + M G IE++ Sbjct 16 AYWALRIALGVVPIVAGLDKFTNLLAD---WAGYLSPLAVRLLPVSPTAFMRAAGVIEVI 72 Query 82 AGV-LVAVAPRIGAWVVAAWLAGIILNLVTGPGFYDIALRD 121 GV +++ R W+ AWLA I LNL+ F D+A RD Sbjct 73 VGVGILSGRARTFGWIAMAWLAAIALNLIASGAFLDVAARD 113 >gi|220915612|ref|YP_002490916.1| hypothetical protein A2cp1_0493 [Anaeromyxobacter dehalogenans 2CP-1] gi|219953466|gb|ACL63850.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans 2CP-1] Length=155 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/101 (41%), Positives = 53/101 (53%), Gaps = 4/101 (3%) Query 22 AYVLLRTLFTVAPILFGLDKFFNLLTHPQHWNMYLAGWINDLVPGTADQCMYLVGAIEIV 81 AY LR V PI+ GLDKF NLL W YL+ L+P + M G IE++ Sbjct 16 AYWALRIALGVVPIVAGLDKFTNLLAD---WAGYLSPLAVRLLPVSPAAFMRAAGVIEVI 72 Query 82 AGV-LVAVAPRIGAWVVAAWLAGIILNLVTGPGFYDIALRD 121 GV +++ R W+ AWLA I LNL+ F D+A RD Sbjct 73 VGVGILSGRARTFGWIAMAWLAAIALNLIASGAFLDVAARD 113 >gi|242059337|ref|XP_002458814.1| hypothetical protein SORBIDRAFT_03g040820 [Sorghum bicolor] gi|241930789|gb|EES03934.1| hypothetical protein SORBIDRAFT_03g040820 [Sorghum bicolor] Length=195 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 19/68 (28%), Positives = 35/68 (52%), Gaps = 1/68 (1%) Query 48 HPQHWNMYLAGWIND-LVPGTADQCMYLVGAIEIVAGVLVAVAPRIGAWVVAAWLAGIIL 106 H W + L G + D L GT + Y++ E++ ++V +GA+ A++AGI+ Sbjct 91 HSTVWKVLLFGKVADSLEKGTEHEDEYMISEKELLVNRFISVPKDMGAFNCGAFVAGIVK 150 Query 107 NLVTGPGF 114 ++ GF Sbjct 151 GVLENAGF 158 >gi|255629460|gb|ACU15076.1| unknown [Glycine max] Length=194 Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust. Identities = 17/76 (23%), Positives = 37/76 (49%), Gaps = 2/76 (2%) Query 41 KFFNLLT--HPQHWNMYLAGWINDLVPGTADQCMYLVGAIEIVAGVLVAVAPRIGAWVVA 98 + N+L+ H W + + L GT + Y++ E++ +++ +G + Sbjct 82 RLLNILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNKFISIPKDMGTFNCG 141 Query 99 AWLAGIILNLVTGPGF 114 A++AGI+ ++ G GF Sbjct 142 AFVAGIVRGVLDGAGF 157 >gi|302761458|ref|XP_002964151.1| hypothetical protein SELMODRAFT_266777 [Selaginella moellendorffii] gi|300167880|gb|EFJ34484.1| hypothetical protein SELMODRAFT_266777 [Selaginella moellendorffii] Length=194 Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust. Identities = 28/110 (26%), Positives = 46/110 (42%), Gaps = 7/110 (6%) Query 10 ALADQLKDPAYSAYVLLRTLFTVAPILFGLDKFFNLL-----THPQHWNMYLAGWINDLV 64 L +L+D Y V LR L + G + LL H W + L Sbjct 50 ELERRLEDQGYG--VGLRFLELLCHREKGNKREIRLLGILSFVHTTVWKSLFGKVADSLE 107 Query 65 PGTADQCMYLVGAIEIVAGVLVAVAPRIGAWVVAAWLAGIILNLVTGPGF 114 GT Y++ E++ ++V +GA+ A++AGI+ ++ G GF Sbjct 108 KGTEHDDEYMISEKELLVNKYISVPKDMGAFNCGAYVAGIVKGVLEGAGF 157 >gi|302823004|ref|XP_002993157.1| hypothetical protein SELMODRAFT_236676 [Selaginella moellendorffii] gi|300139048|gb|EFJ05797.1| hypothetical protein SELMODRAFT_236676 [Selaginella moellendorffii] Length=194 Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust. Identities = 28/110 (26%), Positives = 46/110 (42%), Gaps = 7/110 (6%) Query 10 ALADQLKDPAYSAYVLLRTLFTVAPILFGLDKFFNLL-----THPQHWNMYLAGWINDLV 64 L +L+D Y V LR L + G + LL H W + L Sbjct 50 ELERRLEDQGYG--VGLRFLELLCHREKGNKREIRLLGILSFVHTTVWKSLFGKVADSLE 107 Query 65 PGTADQCMYLVGAIEIVAGVLVAVAPRIGAWVVAAWLAGIILNLVTGPGF 114 GT Y++ E++ ++V +GA+ A++AGI+ ++ G GF Sbjct 108 KGTEHDDEYMISEKELLVNKYISVPKDMGAFNCGAYVAGIVKGVLEGAGF 157 >gi|255631356|gb|ACU16045.1| unknown [Glycine max] Length=194 Score = 37.4 bits (85), Expect = 0.68, Method: Compositional matrix adjust. Identities = 15/67 (23%), Positives = 32/67 (48%), Gaps = 0/67 (0%) Query 48 HPQHWNMYLAGWINDLVPGTADQCMYLVGAIEIVAGVLVAVAPRIGAWVVAAWLAGIILN 107 H W + + L GT + Y++ E++ +++ +G + A++AGI+ Sbjct 91 HSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNKFISIPKDMGTFNCGAFVAGIVRG 150 Query 108 LVTGPGF 114 ++ G GF Sbjct 151 VLDGAGF 157 >gi|224143977|ref|XP_002325144.1| predicted protein [Populus trichocarpa] gi|118489123|gb|ABK96368.1| unknown [Populus trichocarpa x Populus deltoides] gi|222866578|gb|EEF03709.1| predicted protein [Populus trichocarpa] Length=194 Score = 37.4 bits (85), Expect = 0.73, Method: Compositional matrix adjust. Identities = 15/67 (23%), Positives = 32/67 (48%), Gaps = 0/67 (0%) Query 48 HPQHWNMYLAGWINDLVPGTADQCMYLVGAIEIVAGVLVAVAPRIGAWVVAAWLAGIILN 107 H W + + L GT + Y++ E++ +++ +G + A++AGI+ Sbjct 91 HSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRG 150 Query 108 LVTGPGF 114 ++ G GF Sbjct 151 VLDGAGF 157 >gi|217075398|gb|ACJ86059.1| unknown [Medicago truncatula] Length=194 Score = 37.4 bits (85), Expect = 0.77, Method: Compositional matrix adjust. Identities = 15/67 (23%), Positives = 32/67 (48%), Gaps = 0/67 (0%) Query 48 HPQHWNMYLAGWINDLVPGTADQCMYLVGAIEIVAGVLVAVAPRIGAWVVAAWLAGIILN 107 H W + + L GT + Y++ E++ +++ +G + A++AGI+ Sbjct 91 HSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNKFISIPKDMGTFNCGAFVAGIVRG 150 Query 108 LVTGPGF 114 ++ G GF Sbjct 151 VLDGAGF 157 >gi|225873337|ref|YP_002754796.1| pyrimidine-nucleoside phosphorylase [Acidobacterium capsulatum ATCC 51196] gi|225791989|gb|ACO32079.1| pyrimidine-nucleoside phosphorylase [Acidobacterium capsulatum ATCC 51196] Length=451 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 20/55 (37%), Positives = 33/55 (60%), Gaps = 4/55 (7%) Query 91 RIGAWVVAAWLAGIILNLVTGPGFYDIALRDFGLLVGAIALARLAQGVHS-GGIG 144 ++ AW++AAWL G+ L + +A+RD G+++ AL R+ HS GG+G Sbjct 37 QLAAWLMAAWLRGLALEELEA---LTLAMRDSGVVLNHSALGRVTVDKHSTGGVG 88 >gi|284990717|ref|YP_003409271.1| alcohol dehydrogenase zinc-binding domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284063962|gb|ADB74900.1| Alcohol dehydrogenase zinc-binding domain protein [Geodermatophilus obscurus DSM 43160] Length=310 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 28/79 (36%), Positives = 35/79 (45%), Gaps = 3/79 (3%) Query 38 GLDKFFNLLTHPQHWNMYLAGWINDLVPGTADQCMYLVGAIEIVAGVLVAVAPRIGAWVV 97 G D P + LAGW+ +L PG D + LVG+ E V L VA R + Sbjct 175 GADLVRRFGAEPVRYGDGLAGWVRELAPGGVDAALDLVGSDEAVDVSLELVADRQRIATI 234 Query 98 AAW---LAGIILNLVTGPG 113 AA+ A I L GPG Sbjct 235 AAFGRAAADGIRALGGGPG 253 >gi|325265057|ref|ZP_08131784.1| putative antibiotic resistance protein (antibiotic efflux protein) [Clostridium sp. D5] gi|324029747|gb|EGB91035.1| putative antibiotic resistance protein (antibiotic efflux protein) [Clostridium sp. D5] Length=405 Score = 34.7 bits (78), Expect = 5.1, Method: Compositional matrix adjust. Identities = 14/37 (38%), Positives = 24/37 (65%), Gaps = 3/37 (8%) Query 60 INDLVPGTADQCMYLVGAIEIVAGVLVAVAPRIGAWV 96 + DL P ++C Y++GA++ VAG+ AP +G W+ Sbjct 134 VADLYPNKVERCFYIMGALQTVAGLF---APLLGIWL 167 >gi|167749824|ref|ZP_02421951.1| hypothetical protein EUBSIR_00792 [Eubacterium siraeum DSM 15702] gi|167657136|gb|EDS01266.1| hypothetical protein EUBSIR_00792 [Eubacterium siraeum DSM 15702] Length=214 Score = 34.3 bits (77), Expect = 5.6, Method: Compositional matrix adjust. Identities = 22/73 (31%), Positives = 40/73 (55%), Gaps = 3/73 (4%) Query 16 KDPAYSAYVLLRTLFTVAPILFGLDKFFNLLTHPQHWNMYLAGWINDLVPGTADQCMYLV 75 K + +A +L T+F +LF +D FF LL +P ++ + + VPGT++ +Y+ Sbjct 61 KRKSLTAITVLLTVFDSILLLFKID-FFRLLCNP--YDYFTSYNFTSFVPGTSEYAIYVS 117 Query 76 GAIEIVAGVLVAV 88 I I+A V+ + Sbjct 118 YYIVIIATVIAGI 130 >gi|291531050|emb|CBK96635.1| hypothetical protein EUS_15100 [Eubacterium siraeum 70/3] Length=214 Score = 34.3 bits (77), Expect = 5.6, Method: Compositional matrix adjust. Identities = 22/73 (31%), Positives = 40/73 (55%), Gaps = 3/73 (4%) Query 16 KDPAYSAYVLLRTLFTVAPILFGLDKFFNLLTHPQHWNMYLAGWINDLVPGTADQCMYLV 75 K + +A +L T+F +LF +D FF LL +P ++ + + VPGT++ +Y+ Sbjct 61 KRKSLTAITVLLTVFDSLLLLFKID-FFRLLCNP--YDYFTSYNFTSFVPGTSEYAIYVS 117 Query 76 GAIEIVAGVLVAV 88 I I+A V+ + Sbjct 118 YYIVIIATVIAGI 130 >gi|291557484|emb|CBL34601.1| hypothetical protein ES1_16650 [Eubacterium siraeum V10Sc8a] Length=214 Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust. Identities = 22/73 (31%), Positives = 40/73 (55%), Gaps = 3/73 (4%) Query 16 KDPAYSAYVLLRTLFTVAPILFGLDKFFNLLTHPQHWNMYLAGWINDLVPGTADQCMYLV 75 K + +A +L T+F +LF +D FF LL +P ++ + + VPGT++ +Y+ Sbjct 61 KRKSLTAITVLLTVFDSLLLLFKID-FFRLLCNP--YDYFTSYNFTSFVPGTSEYAIYVS 117 Query 76 GAIEIVAGVLVAV 88 I I+A V+ + Sbjct 118 YYIVIIATVIAGI 130 Lambda K H 0.327 0.143 0.457 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 127605758688 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40