BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2618 Length=225 Score E Sequences producing significant alignments: (Bits) Value gi|148823812|ref|YP_001288566.1| hypothetical protein TBFG_12637... 453 9e-126 gi|15609755|ref|NP_217134.1| hypothetical protein Rv2618 [Mycoba... 451 3e-125 gi|254232733|ref|ZP_04926060.1| conserved hypothetical protein [... 450 6e-125 gi|15842158|ref|NP_337195.1| hypothetical protein MT2693 [Mycoba... 449 2e-124 gi|342858557|ref|ZP_08715212.1| hypothetical protein MCOL_06766 ... 325 4e-87 gi|240170651|ref|ZP_04749310.1| hypothetical protein MkanA1_1515... 312 2e-83 gi|254823278|ref|ZP_05228279.1| hypothetical protein MintA_25344... 279 2e-73 gi|333991041|ref|YP_004523655.1| transcriptional regulator [Myco... 277 9e-73 gi|289746413|ref|ZP_06505791.1| conserved hypothetical protein [... 270 8e-71 gi|258653790|ref|YP_003202946.1| transcriptional regulator [Naka... 210 2e-52 gi|254819896|ref|ZP_05224897.1| hypothetical protein MintA_08226... 205 5e-51 gi|302548959|ref|ZP_07301301.1| transcriptional regulator [Strep... 182 4e-44 gi|331698832|ref|YP_004335071.1| putative transcriptional regula... 177 1e-42 gi|111021211|ref|YP_704183.1| transcriptional regulator [Rhodoco... 176 2e-42 gi|226363567|ref|YP_002781349.1| SufR family transcriptional reg... 175 4e-42 gi|119714156|ref|YP_919298.1| hypothetical protein Noca_4852 [No... 175 4e-42 gi|119717576|ref|YP_924541.1| putative transcriptional regulator... 173 2e-41 gi|340527741|gb|AEK42946.1| ArsR family transcriptional regulato... 169 3e-40 gi|300786267|ref|YP_003766558.1| ArsR family transcriptional reg... 169 3e-40 gi|284030581|ref|YP_003380512.1| putative transcriptional regula... 164 9e-39 gi|116671277|ref|YP_832210.1| putative transcriptional regulator... 149 3e-34 gi|297564409|ref|YP_003683382.1| transcriptional regulator [Noca... 146 2e-33 gi|331697421|ref|YP_004333660.1| putative transcriptional regula... 144 8e-33 gi|291300321|ref|YP_003511599.1| putative transcriptional regula... 144 1e-32 gi|119961021|ref|YP_948428.1| hypothetical protein AAur_2713 [Ar... 142 4e-32 gi|134100159|ref|YP_001105820.1| transcriptional regulator [Sacc... 141 8e-32 gi|271967147|ref|YP_003341343.1| transcriptional regulator [Stre... 136 2e-30 gi|320007931|gb|ADW02781.1| putative transcriptional regulator [... 135 6e-30 gi|302526923|ref|ZP_07279265.1| predicted protein [Streptomyces ... 134 7e-30 gi|311894415|dbj|BAJ26823.1| hypothetical protein KSE_09870 [Kit... 134 8e-30 gi|333991101|ref|YP_004523715.1| transcriptional regulator [Myco... 130 1e-28 gi|54025119|ref|YP_119361.1| hypothetical protein nfa31500 [Noca... 122 5e-26 gi|297195924|ref|ZP_06913322.1| conserved hypothetical protein [... 120 2e-25 gi|226359492|ref|YP_002777269.1| hypothetical protein ROP_00770 ... 118 6e-25 gi|256391831|ref|YP_003113395.1| transcriptional regulator [Cate... 116 3e-24 gi|134101225|ref|YP_001106886.1| putative transcriptional regula... 113 2e-23 gi|254822072|ref|ZP_05227073.1| hypothetical protein MintA_19212... 112 5e-23 gi|302532361|ref|ZP_07284703.1| predicted protein [Streptomyces ... 111 7e-23 gi|108797700|ref|YP_637897.1| putative transcriptional regulator... 111 8e-23 gi|302525641|ref|ZP_07277983.1| conserved hypothetical protein [... 109 4e-22 gi|111025061|ref|YP_707481.1| transcriptional regulator [Rhodoco... 108 5e-22 gi|289766909|ref|ZP_06526287.1| transcriptional regulator [Strep... 106 3e-21 gi|291435133|ref|ZP_06574523.1| conserved hypothetical protein [... 105 5e-21 gi|117928871|ref|YP_873422.1| putative transcriptional regulator... 105 7e-21 gi|51893171|ref|YP_075862.1| hypothetical protein STH2033 [Symbi... 85.5 5e-15 gi|312110236|ref|YP_003988552.1| ArsR fmaily transcriptional reg... 84.3 1e-14 gi|239827711|ref|YP_002950335.1| transcriptional regulator [Geob... 84.0 1e-14 gi|212638745|ref|YP_002315265.1| ArsR family transcriptional reg... 83.2 2e-14 gi|169829075|ref|YP_001699233.1| hypothetical protein Bsph_3617 ... 76.6 3e-12 gi|319651533|ref|ZP_08005661.1| transcriptional regulator [Bacil... 75.1 7e-12 >gi|148823812|ref|YP_001288566.1| hypothetical protein TBFG_12637 [Mycobacterium tuberculosis F11] gi|253798299|ref|YP_003031300.1| hypothetical protein TBMG_01353 [Mycobacterium tuberculosis KZN 1435] gi|289746416|ref|ZP_06505794.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] 32 more sequence titles Length=242 Score = 453 bits (1165), Expect = 9e-126, Method: Compositional matrix adjust. Identities = 225/225 (100%), Positives = 225/225 (100%), Gaps = 0/225 (0%) Query 1 VDPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSG 60 VDPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSG Sbjct 18 VDPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSG 77 Query 61 PGAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQ 120 PGAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQ Sbjct 78 PGAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQ 137 Query 121 AMGAAATTRPPADPAAALELTLDVLRKYGYEPRRPAGPGDDEVELVNCPFHALAREQTEL 180 AMGAAATTRPPADPAAALELTLDVLRKYGYEPRRPAGPGDDEVELVNCPFHALAREQTEL Sbjct 138 AMGAAATTRPPADPAAALELTLDVLRKYGYEPRRPAGPGDDEVELVNCPFHALAREQTEL 197 Query 181 ACNMNHALITGVADALAPHSPAVRLAPGPARCCVVLKRCSAHDPE 225 ACNMNHALITGVADALAPHSPAVRLAPGPARCCVVLKRCSAHDPE Sbjct 198 ACNMNHALITGVADALAPHSPAVRLAPGPARCCVVLKRCSAHDPE 242 >gi|15609755|ref|NP_217134.1| hypothetical protein Rv2618 [Mycobacterium tuberculosis H37Rv] gi|31793804|ref|NP_856297.1| hypothetical protein Mb2651 [Mycobacterium bovis AF2122/97] gi|121638507|ref|YP_978731.1| hypothetical protein BCG_2645 [Mycobacterium bovis BCG str. Pasteur 1173P2] 40 more sequence titles Length=225 Score = 451 bits (1161), Expect = 3e-125, Method: Compositional matrix adjust. Identities = 224/225 (99%), Positives = 225/225 (100%), Gaps = 0/225 (0%) Query 1 VDPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSG 60 +DPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSG Sbjct 1 MDPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSG 60 Query 61 PGAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQ 120 PGAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQ Sbjct 61 PGAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQ 120 Query 121 AMGAAATTRPPADPAAALELTLDVLRKYGYEPRRPAGPGDDEVELVNCPFHALAREQTEL 180 AMGAAATTRPPADPAAALELTLDVLRKYGYEPRRPAGPGDDEVELVNCPFHALAREQTEL Sbjct 121 AMGAAATTRPPADPAAALELTLDVLRKYGYEPRRPAGPGDDEVELVNCPFHALAREQTEL 180 Query 181 ACNMNHALITGVADALAPHSPAVRLAPGPARCCVVLKRCSAHDPE 225 ACNMNHALITGVADALAPHSPAVRLAPGPARCCVVLKRCSAHDPE Sbjct 181 ACNMNHALITGVADALAPHSPAVRLAPGPARCCVVLKRCSAHDPE 225 >gi|254232733|ref|ZP_04926060.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|124601792|gb|EAY60802.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|323718770|gb|EGB27928.1| hypothetical protein TMMG_02630 [Mycobacterium tuberculosis CDC1551A] Length=242 Score = 450 bits (1158), Expect = 6e-125, Method: Compositional matrix adjust. Identities = 224/225 (99%), Positives = 224/225 (99%), Gaps = 0/225 (0%) Query 1 VDPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSG 60 VDPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAE LLDTEYARLTGRSG Sbjct 18 VDPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEDLLDTEYARLTGRSG 77 Query 61 PGAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQ 120 PGAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQ Sbjct 78 PGAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQ 137 Query 121 AMGAAATTRPPADPAAALELTLDVLRKYGYEPRRPAGPGDDEVELVNCPFHALAREQTEL 180 AMGAAATTRPPADPAAALELTLDVLRKYGYEPRRPAGPGDDEVELVNCPFHALAREQTEL Sbjct 138 AMGAAATTRPPADPAAALELTLDVLRKYGYEPRRPAGPGDDEVELVNCPFHALAREQTEL 197 Query 181 ACNMNHALITGVADALAPHSPAVRLAPGPARCCVVLKRCSAHDPE 225 ACNMNHALITGVADALAPHSPAVRLAPGPARCCVVLKRCSAHDPE Sbjct 198 ACNMNHALITGVADALAPHSPAVRLAPGPARCCVVLKRCSAHDPE 242 >gi|15842158|ref|NP_337195.1| hypothetical protein MT2693 [Mycobacterium tuberculosis CDC1551] gi|13882444|gb|AAK47009.1| hypothetical protein MT2693 [Mycobacterium tuberculosis CDC1551] Length=225 Score = 449 bits (1155), Expect = 2e-124, Method: Compositional matrix adjust. Identities = 223/225 (99%), Positives = 224/225 (99%), Gaps = 0/225 (0%) Query 1 VDPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSG 60 +DPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAE LLDTEYARLTGRSG Sbjct 1 MDPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEDLLDTEYARLTGRSG 60 Query 61 PGAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQ 120 PGAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQ Sbjct 61 PGAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQ 120 Query 121 AMGAAATTRPPADPAAALELTLDVLRKYGYEPRRPAGPGDDEVELVNCPFHALAREQTEL 180 AMGAAATTRPPADPAAALELTLDVLRKYGYEPRRPAGPGDDEVELVNCPFHALAREQTEL Sbjct 121 AMGAAATTRPPADPAAALELTLDVLRKYGYEPRRPAGPGDDEVELVNCPFHALAREQTEL 180 Query 181 ACNMNHALITGVADALAPHSPAVRLAPGPARCCVVLKRCSAHDPE 225 ACNMNHALITGVADALAPHSPAVRLAPGPARCCVVLKRCSAHDPE Sbjct 181 ACNMNHALITGVADALAPHSPAVRLAPGPARCCVVLKRCSAHDPE 225 >gi|342858557|ref|ZP_08715212.1| hypothetical protein MCOL_06766 [Mycobacterium colombiense CECT 3035] gi|342134261|gb|EGT87441.1| hypothetical protein MCOL_06766 [Mycobacterium colombiense CECT 3035] Length=232 Score = 325 bits (832), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 165/215 (77%), Positives = 181/215 (85%), Gaps = 6/215 (2%) Query 2 DPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGP 61 DPVRRQLY+FVCSQ VSRDQAADAVGIP HQAKFHLDRLTAEGLL++EYARLTGRSGP Sbjct 19 DPVRRQLYRFVCSQPGLVSRDQAADAVGIPHHQAKFHLDRLTAEGLLESEYARLTGRSGP 78 Query 62 GAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQA 121 GAGRT+KLYRRAGRDIA+SLPQREYELAGRLMA AI SA TGEP EVLNR+A +YG+A Sbjct 79 GAGRTSKLYRRAGRDIAVSLPQREYELAGRLMATAIARSAGTGEPVAEVLNRVAREYGRA 138 Query 122 MGAAATTRPPADPAAALELTLDVLRKYGYEPRRPAGPGDDEVELVNCPFHALAREQTELA 181 M AA + PP D AA++ + +LR+YGYEPR + EVEL NCPFHALA+EQTELA Sbjct 139 M--AAGSAPPTDAGAAMQRAIRLLRRYGYEPRF----SESEVELANCPFHALAQEQTELA 192 Query 182 CNMNHALITGVADALAPHSPAVRLAPGPARCCVVL 216 C MNHALITGVADALAPH P VRL PGP RCCVVL Sbjct 193 CTMNHALITGVADALAPHGPDVRLCPGPERCCVVL 227 >gi|240170651|ref|ZP_04749310.1| hypothetical protein MkanA1_15155 [Mycobacterium kansasii ATCC 12478] Length=230 Score = 312 bits (800), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 165/216 (77%), Positives = 181/216 (84%), Gaps = 6/216 (2%) Query 2 DPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGP 61 DPVR +LY++VCSQ PVSRDQAADA+GI HQ KFHLDRLTAEGLL+T+YAR+TGRSGP Sbjct 17 DPVRHRLYEYVCSQPGPVSRDQAADALGIAHHQVKFHLDRLTAEGLLETDYARVTGRSGP 76 Query 62 GAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQA 121 GAGRTAK YRRA RDIA+SLPQREYELAGRLMAAAI SATTGEP EVLN++AHDYGQ Sbjct 77 GAGRTAKRYRRARRDIAVSLPQREYELAGRLMAAAIARSATTGEPAAEVLNQLAHDYGQM 136 Query 122 MGAAATTRPPADPAAALELTLDVLRKYGYEPRRPAGPGDDEVELVNCPFHALAREQTELA 181 +G PAD AAALE+TL VLR++GYEPRR D EVEL NCPFHALA+EQTELA Sbjct 137 IGNGVAK--PADAAAALEVTLRVLRRHGYEPRRT----DGEVELANCPFHALAQEQTELA 190 Query 182 CNMNHALITGVADALAPHSPAVRLAPGPARCCVVLK 217 C MNHALITGV+DALAPH P RL PGP RCCVVLK Sbjct 191 CTMNHALITGVSDALAPHGPDARLDPGPQRCCVVLK 226 >gi|254823278|ref|ZP_05228279.1| hypothetical protein MintA_25344 [Mycobacterium intracellulare ATCC 13950] Length=237 Score = 279 bits (714), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 149/218 (69%), Positives = 171/218 (79%), Gaps = 7/218 (3%) Query 2 DPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGP 61 DPVR +LYQFVCSQ PVSRDQAA+ VGI RHQAKFHLDRLTAEGLL+ +YARLTGR+GP Sbjct 19 DPVRYELYQFVCSQPGPVSRDQAAEVVGIARHQAKFHLDRLTAEGLLECDYARLTGRTGP 78 Query 62 GAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQA 121 GAGRT+KLYRR RDIA+SLPQR+YELAGRLM AIV S +G P VEVL+R AHDYG++ Sbjct 79 GAGRTSKLYRRVRRDIAVSLPQRQYELAGRLMGRAIVQSQQSGAPVVEVLHRNAHDYGRS 138 Query 122 MGAAATT---RPPADPAAALELTLDVLRKYGYEPRRPAGPGDDEVELVNCPFHALAREQT 178 + +A + R PAD AAL+L +LR+YGYEP G DD V LVNCPFHALA+EQT Sbjct 139 IAESALSAARRRPADARAALKLVARLLREYGYEP----GHDDDGVYLVNCPFHALAQEQT 194 Query 179 ELACNMNHALITGVADALAPHSPAVRLAPGPARCCVVL 216 ELAC MNHALI G+ DA+ PH RL P P RCCVV+ Sbjct 195 ELACGMNHALIDGMVDAMTPHCLDARLQPTPGRCCVVV 232 >gi|333991041|ref|YP_004523655.1| transcriptional regulator [Mycobacterium sp. JDM601] gi|333487010|gb|AEF36402.1| transcriptional regulator [Mycobacterium sp. JDM601] Length=237 Score = 277 bits (708), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 147/216 (69%), Positives = 169/216 (79%), Gaps = 4/216 (1%) Query 2 DPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGP 61 DPVRR+LY+FV SQ+ PVSRD AA A GI RHQAKFHLDRL A+GLL ++YARLTGRSGP Sbjct 16 DPVRRELYRFVASQAAPVSRDDAAAATGIARHQAKFHLDRLEADGLLVSDYARLTGRSGP 75 Query 62 GAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQA 121 GAGR +K YRR+ +IA+SLP REYELAGRLMA AI SA TG P ++ L+R+A DYG+ Sbjct 76 GAGRPSKRYRRSPSEIAVSLPPREYELAGRLMADAIAESARTGTPAIQALDRLARDYGRE 135 Query 122 MGAAATT-RPPADPAAALELTLDVLRKYGYEPRRPAGPGDDEVELVNCPFHALAREQTEL 180 +G AAT RPP D AAALEL DVL ++GYEPR G GD V L NCPFH LA+ QTEL Sbjct 136 LGEAATAERPPTDTAAALELATDVLTEHGYEPRDDGG-GD--VYLANCPFHGLAQSQTEL 192 Query 181 ACNMNHALITGVADALAPHSPAVRLAPGPARCCVVL 216 AC MN ALI+GVADAL P+ P RLAP P+RCCVVL Sbjct 193 ACTMNLALISGVADALMPYCPRARLAPDPSRCCVVL 228 >gi|289746413|ref|ZP_06505791.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289686941|gb|EFD54429.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] Length=152 Score = 270 bits (691), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 135/135 (100%), Positives = 135/135 (100%), Gaps = 0/135 (0%) Query 1 VDPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSG 60 VDPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSG Sbjct 18 VDPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSG 77 Query 61 PGAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQ 120 PGAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQ Sbjct 78 PGAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQ 137 Query 121 AMGAAATTRPPADPA 135 AMGAAATTRPPADPA Sbjct 138 AMGAAATTRPPADPA 152 >gi|258653790|ref|YP_003202946.1| transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258557015|gb|ACV79957.1| putative transcriptional regulator [Nakamurella multipartita DSM 44233] Length=233 Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 113/218 (52%), Positives = 144/218 (67%), Gaps = 6/218 (2%) Query 2 DPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGP 61 DPVRR+LY FV +QS PVSRD+AA+ V +PRH AKFHLD+L +GLLDTE+ RL+GR GP Sbjct 18 DPVRRELYLFVAAQSEPVSRDRAAEGVAVPRHTAKFHLDKLVEQGLLDTEFQRLSGRRGP 77 Query 62 GAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQA 121 GAGR KLYRR+GR+++++LP+R Y+LAG+L A AI S G P ++ ++ A +YG+ Sbjct 78 GAGRPTKLYRRSGRELSVTLPERRYDLAGQLFAQAIDDSTRAGAPVLDAVHTAAAEYGRT 137 Query 122 MGAAA--TTRPPADPAAALELTLDVLRKYGYEPRRPAGPGDDEVELVNCPFHALAREQTE 179 +G A P PA VL +GYEPRR D V LVNCPF ALAR+ T+ Sbjct 138 LGTQARQALGPRPGPAQRAAAVCAVLAAHGYEPRRV----DSSVILVNCPFDALARDHTD 193 Query 180 LACNMNHALITGVADALAPHSPAVRLAPGPARCCVVLK 217 L C MN AL+ VAD + + RL P RCCVVL Sbjct 194 LVCGMNLALLGAVADRVGDGTLTARLDPADDRCCVVLN 231 >gi|254819896|ref|ZP_05224897.1| hypothetical protein MintA_08226 [Mycobacterium intracellulare ATCC 13950] Length=145 Score = 205 bits (521), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 101/125 (81%), Positives = 110/125 (88%), Gaps = 0/125 (0%) Query 2 DPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGP 61 DPVR +LYQFVC Q PV+RDQAADAVGIP HQAKFHLDRLTAEGLL+T +AR+TGRSGP Sbjct 19 DPVRHRLYQFVCDQPAPVTRDQAADAVGIPHHQAKFHLDRLTAEGLLETGFARMTGRSGP 78 Query 62 GAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQA 121 GAGRTAKLYRRAGRDIA+SLPQREYELAGRLMA AI SA TGEP VLNR+A DYG+A Sbjct 79 GAGRTAKLYRRAGRDIAVSLPQREYELAGRLMATAIARSAGTGEPVTSVLNRVARDYGRA 138 Query 122 MGAAA 126 +GA A Sbjct 139 IGARA 143 >gi|302548959|ref|ZP_07301301.1| transcriptional regulator [Streptomyces viridochromogenes DSM 40736] gi|302466577|gb|EFL29670.1| transcriptional regulator [Streptomyces viridochromogenes DSM 40736] Length=264 Score = 182 bits (461), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 104/221 (48%), Positives = 129/221 (59%), Gaps = 17/221 (7%) Query 2 DPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGP 61 +P RR+LY V Q PVSRD+AA A+G+ R A FHLDRL E LLD Y R +GR+GP Sbjct 22 EPTRRRLYDHVVRQPGPVSRDEAAAALGLARQTAAFHLDRLADESLLDVVYERRSGRTGP 81 Query 62 GAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDY-GQ 120 GAGR AKLY+R+ + ++LP+R YELAGRL+A A+ + TGEP VL+R AHD GQ Sbjct 82 GAGRPAKLYKRSTTQVTVNLPERHYELAGRLLAQAVEEAEATGEPVRAVLHRKAHDLGGQ 141 Query 121 AMGAAATTRPPADPAAALELTLDVLRKYGYEPRRPAGPGDDEVELVNCPFHALAREQTEL 180 G TT L +L +YG+EPR + L NCPFH LARE TE Sbjct 142 LAGQGDTT------------VLGLLERYGFEPRSDGA----AIVLGNCPFHTLAREHTET 185 Query 181 ACNMNHALITGVADALAPHSPAVRLAPGPARCCVVLKRCSA 221 C MN L+ G + L LAP P CCV L+ S+ Sbjct 186 VCGMNLHLLRGALEGLDESGLQACLAPSPGYCCVRLEPASS 226 >gi|331698832|ref|YP_004335071.1| putative transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326953521|gb|AEA27218.1| putative transcriptional regulator [Pseudonocardia dioxanivorans CB1190] Length=241 Score = 177 bits (448), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 105/222 (48%), Positives = 131/222 (60%), Gaps = 12/222 (5%) Query 2 DPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGP 61 +P RR+LY FV Q PV RD AA A+G+PR A FHLDRL GLLD + R +GR GP Sbjct 17 EPTRRRLYAFVVRQPEPVGRDDAAAALGLPRTTAAFHLDRLADAGLLDVIHERRSGRRGP 76 Query 62 GAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQA 121 GAGR AKLYRRA R+I +SLP+R Y+L GRL+A A+ + ++G P VL + A+ +G+ Sbjct 77 GAGRPAKLYRRAAREIEVSLPERRYDLVGRLLAGAVDEATSSGRPVGVVLEQRAYAFGRT 136 Query 122 MGAAATT-----RPP--ADPAAALELTLDVLRKYGYEPRRPAGPGDDEVELVNCPFHALA 174 + T RP AD A+ + + VL +GYEPR D + L NCPF LA Sbjct 137 LAEGGDTADADCRPSGLADDGPAMSV-VRVLEAHGYEPR----SSDTGITLGNCPFDVLA 191 Query 175 REQTELACNMNHALITGVADALAPHSPAVRLAPGPARCCVVL 216 RE TEL C N LI+GV D L PG A CCV L Sbjct 192 REYTELVCGANLCLISGVLDTHPDARLEAELRPGEAGCCVHL 233 >gi|111021211|ref|YP_704183.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110820741|gb|ABG96025.1| possible transcriptional regulator [Rhodococcus jostii RHA1] Length=228 Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 98/216 (46%), Positives = 130/216 (61%), Gaps = 12/216 (5%) Query 2 DPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGP 61 +PVRR++Y V +Q+ PVSRD A+A+G+ R + FHL++L EGLL E+AR GRSGP Sbjct 17 EPVRRRVYDHVRAQATPVSRDDVAEALGLARSTSAFHLEKLADEGLLAVEFARRGGRSGP 76 Query 62 GAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQA 121 GAGR AKLYRR+ R+ ++ LP+R Y LAG L A AI + TG L+ AHD+G+ Sbjct 77 GAGRPAKLYRRSDREFSVHLPERAYALAGELFAQAIEDADATGASPRAALSARAHDFGRG 136 Query 122 MGAAATTRPPADPAAALELTLDVLRKYGYEPRRPAGPGDDEVELVNCPFHALAREQTELA 181 +G AD + L L GYEPRR D + LVNCPFHALAR+ T++ Sbjct 137 LG--------ADTGCTDDDLLAALATCGYEPRR----SDGTLVLVNCPFHALARQHTDMV 184 Query 182 CNMNHALITGVADALAPHSPAVRLAPGPARCCVVLK 217 C MN AL++G+ D LAP CCV ++ Sbjct 185 CGMNLALLSGLLDGAGCEDRRATLAPADGYCCVRIE 220 >gi|226363567|ref|YP_002781349.1| SufR family transcriptional regulator [Rhodococcus opacus B4] gi|226242056|dbj|BAH52404.1| putative SufR family transcriptional regulator [Rhodococcus opacus B4] Length=224 Score = 175 bits (444), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 98/213 (47%), Positives = 127/213 (60%), Gaps = 12/213 (5%) Query 2 DPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGP 61 +PVRR +Y V +Q PVSRD A+A+G+ R + FHL++L EGLL E+AR GRSGP Sbjct 17 EPVRRHVYDHVRTQPSPVSRDDVAEALGLARSTSAFHLEKLADEGLLAVEFARRGGRSGP 76 Query 62 GAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQA 121 GAGR AKLYRR+ R+ A+ LP+R Y LAG L A AI + TG + L+ AHD+G+ Sbjct 77 GAGRPAKLYRRSDREFAVHLPERTYALAGELFAQAIEDADATGISPRDALSARAHDFGRG 136 Query 122 MGAAATTRPPADPAAALELTLDVLRKYGYEPRRPAGPGDDEVELVNCPFHALAREQTELA 181 +GA E + L + GYEPRR D + LVNCPFHALAR+ T++ Sbjct 137 LGAGI--------GCTEENLVAALAESGYEPRRD----DGTIVLVNCPFHALARQHTDMV 184 Query 182 CNMNHALITGVADALAPHSPAVRLAPGPARCCV 214 C MN AL++G+ D LAP CCV Sbjct 185 CGMNLALLSGLLDGAGCDDRRATLAPTEGYCCV 217 >gi|119714156|ref|YP_919298.1| hypothetical protein Noca_4852 [Nocardioides sp. JS614] gi|119526065|gb|ABL79435.1| conserved hypothetical protein [Nocardioides sp. JS614] Length=238 Score = 175 bits (444), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 99/220 (45%), Positives = 132/220 (60%), Gaps = 9/220 (4%) Query 2 DPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGP 61 D RR LY++V Q PV R+QAA A+G+ H FHLDRL EGLL+ EY RL+G++GP Sbjct 15 DETRRALYEYVSGQPEPVGREQAAAALGLASHNVNFHLDRLVTEGLLEVEYRRLSGKTGP 74 Query 62 GAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQA 121 GAGR +KLYRRA R+ A+SLP R Y+L G ++AAA+ A G P + L+ A G + Sbjct 75 GAGRPSKLYRRASREFAVSLPPRRYDLVGDILAAAVT-RAAEGAPLDQALHECARRQGLS 133 Query 122 MGAAATTRPPADPAAALELTLDVLRKYGYEPRRPAGPGDDEVELVNCPFHALAREQTELA 181 +G A D + +L +VLR +EP+ DDE+ L NCPF LA++ T L Sbjct 134 LGQDAEG---LDRSESLHALAEVLRSQDFEPQ----VRDDELVLSNCPFDTLAQKHTALV 186 Query 182 CNMNHALITGVADALAPHSPAVRLAPGPARCCVVLKRCSA 221 C +N A + GVAD+L A L P P +CCV + SA Sbjct 187 CGLNQAFVQGVADSLDSDITA-HLEPEPGKCCVKARPASA 225 >gi|119717576|ref|YP_924541.1| putative transcriptional regulator [Nocardioides sp. JS614] gi|119538237|gb|ABL82854.1| putative transcriptional regulator [Nocardioides sp. JS614] Length=228 Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 100/217 (47%), Positives = 133/217 (62%), Gaps = 8/217 (3%) Query 1 VDPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSG 60 ++P RR LY + +Q+ P+SR+QAA A +P H AKFHLDRL EGLL+ EY RL+GRSG Sbjct 16 MEPARRALYLYAAAQAEPISREQAAAACELPLHSAKFHLDRLVDEGLLEVEYRRLSGRSG 75 Query 61 PGAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQ 120 PGAGR +KLYRRA R++++SLP+R Y+LAG ++A AI +A G + + +A GQ Sbjct 76 PGAGRPSKLYRRADREVSVSLPERHYDLAGDVLATAIDEAARAGSSVQDSVLAVAEARGQ 135 Query 121 AMGAAATTRPPADPAAALELTLDVLRKYGYEPRRPAGPGDDEVELVNCPFHALAREQTEL 180 M AA+ D LE T VL ++GYEP + D + L NCPF LAR+ EL Sbjct 136 VMAAASEVSAGDD----LERTAAVLAEHGYEPHQDG----DTLSLSNCPFDRLARDHVEL 187 Query 181 ACNMNHALITGVADALAPHSPAVRLAPGPARCCVVLK 217 C MN L+ GV + L S L P CCV ++ Sbjct 188 VCGMNLGLVNGVIEGLGCQSLDAVLDPEEGLCCVKVR 224 >gi|340527741|gb|AEK42946.1| ArsR family transcriptional regulator [Amycolatopsis mediterranei S699] Length=216 Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 96/215 (45%), Positives = 124/215 (58%), Gaps = 16/215 (7%) Query 2 DPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGP 61 +P RR+LY++V + PVSRD A A+G+PR FHLDRL E LL + R TGRSGP Sbjct 15 EPTRRRLYEYVVRRPEPVSRDDVAAALGVPRATVAFHLDRLVEERLLAVGHERRTGRSGP 74 Query 62 GAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQA 121 GAGR AKLYRR+ R +++SLP+R+YELAG L+AAA+ + TG ++L R A + G Sbjct 75 GAGRPAKLYRRSDRQVSISLPERQYELAGGLLAAAVEEADETGGSPRQILTRCARERG-- 132 Query 122 MGAAATTRPPADPAAALELTLDVLRKYGYEPRRPAGPGDDEVELVNCPFHALAREQTELA 181 A+ AA +D L + G+EPR D EV L NCPFH L++ T L Sbjct 133 ----------AELAAGGRDIVDTLEENGFEPRLE----DGEVALANCPFHRLSQVHTRLV 178 Query 182 CNMNHALITGVADALAPHSPAVRLAPGPARCCVVL 216 C MN L+ G+ RL P P CCV L Sbjct 179 CEMNLGLVEGMLAGAGESGLRARLDPQPGSCCVRL 213 >gi|300786267|ref|YP_003766558.1| ArsR family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299795781|gb|ADJ46156.1| ArsR family transcriptional regulator [Amycolatopsis mediterranei U32] Length=217 Score = 169 bits (427), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 96/215 (45%), Positives = 124/215 (58%), Gaps = 16/215 (7%) Query 2 DPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGP 61 +P RR+LY++V + PVSRD A A+G+PR FHLDRL E LL + R TGRSGP Sbjct 16 EPTRRRLYEYVVRRPEPVSRDDVAAALGVPRATVAFHLDRLVEERLLAVGHERRTGRSGP 75 Query 62 GAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQA 121 GAGR AKLYRR+ R +++SLP+R+YELAG L+AAA+ + TG ++L R A + G Sbjct 76 GAGRPAKLYRRSDRQVSISLPERQYELAGGLLAAAVEEADETGGSPRQILTRCARERG-- 133 Query 122 MGAAATTRPPADPAAALELTLDVLRKYGYEPRRPAGPGDDEVELVNCPFHALAREQTELA 181 A+ AA +D L + G+EPR D EV L NCPFH L++ T L Sbjct 134 ----------AELAAGGRDIVDTLEENGFEPRLE----DGEVALANCPFHRLSQVHTRLV 179 Query 182 CNMNHALITGVADALAPHSPAVRLAPGPARCCVVL 216 C MN L+ G+ RL P P CCV L Sbjct 180 CEMNLGLVEGMLAGAGESGLRARLDPQPGSCCVRL 214 >gi|284030581|ref|YP_003380512.1| putative transcriptional regulator [Kribbella flavida DSM 17836] gi|283809874|gb|ADB31713.1| putative transcriptional regulator [Kribbella flavida DSM 17836] Length=226 Score = 164 bits (415), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 97/216 (45%), Positives = 127/216 (59%), Gaps = 16/216 (7%) Query 2 DPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGP 61 +P RR+LY+ V + +PVSRD AA A+ IPR A FHLD+L EGLL + R TGR GP Sbjct 19 EPTRRRLYEHVGAADVPVSRDDAAAALAIPRTTAAFHLDKLATEGLLTVVHERRTGRQGP 78 Query 62 GAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQA 121 GAGR AKLYRR+ +I LSLP+R Y +AG+L+AAA+ + +G + L R AH YG Sbjct 79 GAGRPAKLYRRSDAEIELSLPERRYAVAGQLLAAAVEDAEQSGGSPGQALERRAHAYG-- 136 Query 122 MGAAATTRPPADPAAALELTLDVLRKYGYEPRRPAGPGDDEVELVNCPFHALAREQTELA 181 A+ RP E ++L + G+EPR GP V NCPFHAL + T+L Sbjct 137 ---ASLARPD-------EPLTEILDRQGFEPRSD-GPA---VTFANCPFHALVQRHTKLI 182 Query 182 CNMNHALITGVADALAPHSPAVRLAPGPARCCVVLK 217 C MN L+ G+ +A + L P P CCV L+ Sbjct 183 CTMNLRLVEGLLEARGEPALQATLRPTPGHCCVRLE 218 >gi|116671277|ref|YP_832210.1| putative transcriptional regulator [Arthrobacter sp. FB24] gi|116611386|gb|ABK04110.1| putative transcriptional regulator [Arthrobacter sp. FB24] Length=220 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 87/212 (42%), Positives = 117/212 (56%), Gaps = 15/212 (7%) Query 2 DPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGP 61 D RR+L+ F+ + S PV RD+AA A+ IPR A FHLDR+ +G+L E+ +L G++GP Sbjct 18 DENRRRLFGFIAASSRPVGRDEAAAALEIPRSTASFHLDRMVQDGVLAVEFRKLGGKAGP 77 Query 62 GAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQA 121 G+GR AK+YR A ++ S+P R Y+LAG LMA AI S+ GEP EVL ++ G A Sbjct 78 GSGRPAKMYRPAQPEVGASVPDRNYDLAGELMATAIERSSAAGEPVREVLLATSYAKGLA 137 Query 122 MGAAATTRPPADPAAALELTLDVLRKYGYEPRRPAGPGDDEVELVNCPFHALAREQTELA 181 M A+ + +LE + L GY P G G L NCPFH LA TE+ Sbjct 138 M---------AEGSGSLE---EFLSAEGYMPNPDGGGG---FVLENCPFHRLADGHTEVV 182 Query 182 CNMNHALITGVADALAPHSPAVRLAPGPARCC 213 C MN A + G A + P +CC Sbjct 183 CAMNGAFLCGAAAGCGVEESRIAGNTTPGQCC 214 >gi|297564409|ref|YP_003683382.1| transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848858|gb|ADH70876.1| putative transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length=241 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 97/235 (42%), Positives = 130/235 (56%), Gaps = 28/235 (11%) Query 1 VDPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSG 60 DPVRR+LY++V + VSR QAADA+GI R A HLDRL GLL+ +++GR G Sbjct 22 ADPVRRRLYEYVAAAHGEVSRGQAADALGIQRTLAAHHLDRLADAGLLEVARRKVSGREG 81 Query 61 PGAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQ 120 PG+GR AKLYRRA R+++L LP R+YELA ++A A+ E L+ A + G+ Sbjct 82 PGSGRPAKLYRRADRELSLHLPPRDYELAAHVLAEAVERHGAE-----EALHAAAREEGR 136 Query 121 AMGAAATTRPPADPAAALELTLDVLRKYGYEP-----RRPAG-------PGDD-EVELVN 167 +GA P +D+LR GYEP R P G PG+D V L+N Sbjct 137 RIGAEHREEP----------LVDLLRARGYEPEEGAARAPGGDSGPDKAPGEDGGVRLLN 186 Query 168 CPFHALAREQTELACNMNHALITGVADALAPHSPAVRLAPGPARCCVVLKRCSAH 222 CPFH LAR LAC +N L+ G+ + R+ P RCCVV+ + + H Sbjct 187 CPFHTLARAFPPLACGLNLELLRGLLEGRGEDGAGARMDARPGRCCVVISKNNGH 241 >gi|331697421|ref|YP_004333660.1| putative transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326952110|gb|AEA25807.1| putative transcriptional regulator [Pseudonocardia dioxanivorans CB1190] Length=223 Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 96/218 (45%), Positives = 120/218 (56%), Gaps = 21/218 (9%) Query 2 DPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGP 61 +P RR LY++V +Q PVSRDQAA A G+PRH AKFHLDRL A+GLLDTE+ RL R GP Sbjct 16 EPQRRALYRYVVAQPEPVSRDQAAAATGLPRHTAKFHLDRLAADGLLDTEFRRLGTRRGP 75 Query 62 GAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQA 121 GAGR KLYRR+ R+ +++P R Y LA ++AAA SA+ G P E + A G Sbjct 76 GAGRPTKLYRRSAREFDVTVPDRRYALAAAVLAAAAEDSASHGTPIREAVRTAAAAAGTQ 135 Query 122 MGAAATTRPPADPAAALELTLDVLRKYGYEPRRPAGPGDDE---VELVNCPFHALAREQT 178 + + L VL G+EPR DE L NCPFH LA + Sbjct 136 AARESG-----------DDVLTVLAALGFEPR-------DEGAVTTLANCPFHRLAVDHP 177 Query 179 ELACNMNHALITGVADALAPHSPAVRLAPGPARCCVVL 216 +L C M+ L+ V + L P P RCCVVL Sbjct 178 DLTCGMSLHLVGAVLAERGADATTAVLDPAPGRCCVVL 215 >gi|291300321|ref|YP_003511599.1| putative transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290569541|gb|ADD42506.1| putative transcriptional regulator [Stackebrandtia nassauensis DSM 44728] Length=226 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 98/216 (46%), Positives = 130/216 (61%), Gaps = 6/216 (2%) Query 2 DPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGP 61 +P RR+LY FV SQ PVSRD+AA A +PR A FHLDRL GLL + R +GR+GP Sbjct 12 EPTRRRLYDFVVSQPEPVSRDEAAAAEELPRTTAAFHLDRLVEAGLLSVVHERRSGRTGP 71 Query 62 GAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQA 121 GAGR AKLY R+ R I +SLP+R Y+LAG+L+AAA+ + +GE +L+R A G Sbjct 72 GAGRPAKLYHRSDRQITVSLPERRYDLAGQLLAAALSEAENSGESPRAILDRRARTLGTD 131 Query 122 MGAAATTRPPADPAAALELTLDVLRKYGYEPRRPAGPGDDEVELVNCPFHALAREQTELA 181 +G AA + P + + + L + G+EPR D + L NCPFH LAR+Q EL Sbjct 132 IGLAARSLHPE--VSTEDSVVRTLAEQGFEPRVSG----DHILLGNCPFHDLARQQPELV 185 Query 182 CNMNHALITGVADALAPHSPAVRLAPGPARCCVVLK 217 C MN L+ G+ + L + RL P CCV L+ Sbjct 186 CGMNLCLLDGLLNGLGMRGLSPRLNPTRNHCCVRLE 221 >gi|119961021|ref|YP_948428.1| hypothetical protein AAur_2713 [Arthrobacter aurescens TC1] gi|119947880|gb|ABM06791.1| hypothetical protein AAur_2713 [Arthrobacter aurescens TC1] Length=227 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 90/214 (43%), Positives = 119/214 (56%), Gaps = 18/214 (8%) Query 2 DPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGP 61 D RR+LY++V S VSRDQAA A+ +PR A FHLDRL EGLL E+ + ++GP Sbjct 20 DENRRRLYEYVLSTGDAVSRDQAALALEVPRSSASFHLDRLVREGLLRVEFRKSAEKTGP 79 Query 62 GAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQA 121 G+GR +KLYR ++ +S+P+R Y+LAG LMAAAI S G P E L +A G Sbjct 80 GSGRPSKLYRPVMDEVGVSVPERHYDLAGHLMAAAITRSQAGGVPAAEALRDVAAAAGSE 139 Query 122 MGAAATTRPPADPAAALELTLDVLRKYGYEPRRPAGPGDDEVELVNCPFHALAREQTELA 181 +G P D L L + GY+P A G L+NCPFH L+R+ TE+ Sbjct 140 VGR------PGD-------FLGALSELGYDPSPDAAGG---YRLLNCPFHRLSRDHTEVV 183 Query 182 CNMNHALITGVADALAPHSPAVRLAP--GPARCC 213 C MN A ++G A A + + P GP CC Sbjct 184 CAMNGAFLSGAAAASGLSAGIIVPDPDHGPGHCC 217 >gi|134100159|ref|YP_001105820.1| transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291008233|ref|ZP_06566206.1| transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133912782|emb|CAM02895.1| possible transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length=233 Score = 141 bits (355), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 88/217 (41%), Positives = 119/217 (55%), Gaps = 17/217 (7%) Query 2 DPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGP 61 DP+RR+LY+FV PVSRDQ A A GI R A +HLD+L GLL Y R G+ GP Sbjct 19 DPLRRRLYEFVTEHDEPVSRDQVAAAAGIGRTLAAYHLDKLAEAGLLAATYRRPEGKGGP 78 Query 62 GAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQA 121 GAGR AKLY RA R++A+++P R+YEL RL+ + + +P+ V + A Sbjct 79 GAGRPAKLYMRAERELAVTVPPRDYELLARLL-----IESAERDPSGTVRS--------A 125 Query 122 MGAAATTRPPADPAAALELTLDVLRKYGYEPRRPAGPGDDEVELVNCPFHALAREQTELA 181 +GAAA A + L L G++PR + ++EL NCPFH LA++ +L Sbjct 126 VGAAAYEAGRQSVAESDGNVLAALAGCGFQPRE----AEADIELRNCPFHRLAQDHRDLV 181 Query 182 CNMNHALITGVADALAPHSPAVRLAPGPARCCVVLKR 218 C +N LI GV A L P RCCVV+ + Sbjct 182 CGLNLRLIQGVIAGSAHPDGNAELDPRAGRCCVVIHK 218 >gi|271967147|ref|YP_003341343.1| transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270510322|gb|ACZ88600.1| putative transcriptional regulator [Streptosporangium roseum DSM 43021] Length=212 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 85/217 (40%), Positives = 116/217 (54%), Gaps = 21/217 (9%) Query 2 DPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGP 61 DPVRR +Y +V S+ V R++AA+AVG+ R A FHLD+L GLL++ + RLT ++GP Sbjct 14 DPVRRAVYDYVVSRGHEVGRNEAAEAVGVQRTLAAFHLDKLVEVGLLESGFKRLTDKTGP 73 Query 62 GAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQA 121 G+GR AK+YRRA + +++P R+Y R +A A+ EV++ + D Sbjct 74 GSGRPAKVYRRAPGEWQVNVPARDY----RTLAMAL----------AEVVDLLGGDEQAE 119 Query 122 MGAAATTRPPADPAAALELTLDVLRKYGYEPRRPAGPGDDEVELVNCPFHALAREQTELA 181 A A P L +VLR+ GYEP D + L NCPFH LA E L Sbjct 120 RVARRAGAGLAAPGEDLG---EVLRRRGYEPYEE----DGRLRLRNCPFHLLAEEHPLLV 172 Query 182 CNMNHALITGVADALAPHSPAVRLAPGPARCCVVLKR 218 C+MN AL G+ + L RL P P CCV R Sbjct 173 CSMNLALCQGMLEGLGEEGVTARLDPRPGECCVAFSR 209 >gi|320007931|gb|ADW02781.1| putative transcriptional regulator [Streptomyces flavogriseus ATCC 33331] Length=220 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 87/217 (41%), Positives = 111/217 (52%), Gaps = 19/217 (8%) Query 2 DPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGP 61 DPVRR LY+ V V RD AA+A GI R A FHLD+L GLL+ + RL+GRSGP Sbjct 16 DPVRRGLYRHVSGSPGEVGRDAAAEAAGISRSLAAFHLDKLVEAGLLEVSFRRLSGRSGP 75 Query 62 GAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQA 121 GAGR AKLYRRA + +S+P R Y+ AGRL+A + + GE Sbjct 76 GAGRPAKLYRRAEGERTVSMPPRTYDTAGRLLAEVVEQAGLDGELQAAARAAGEA----- 130 Query 122 MGAAATTRPPADPAAALELTLDVLRKYGYEPRRPAGPGDDEVELVNCPFHALAREQTELA 181 A + +DP +++LR G+EP G + L NCPFHALA + L Sbjct 131 --GGAASDEGSDP-------VEILRARGFEPFWDGGT----LRLHNCPFHALADQFPALV 177 Query 182 CNMNHALITGVADAL-APHSPAVRLAPGPARCCVVLK 217 C MN A I G+ L + P P CCV L+ Sbjct 178 CGMNLAGIEGLLAGLTGGQDWTAEMDPLPRGCCVALR 214 >gi|302526923|ref|ZP_07279265.1| predicted protein [Streptomyces sp. AA4] gi|302435818|gb|EFL07634.1| predicted protein [Streptomyces sp. AA4] Length=214 Score = 134 bits (338), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 93/217 (43%), Positives = 116/217 (54%), Gaps = 22/217 (10%) Query 2 DPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGP 61 DPVRR+LY +V S+ VSR++AA+ GI R A FHLD+L GLL+TE RL+GRSGP Sbjct 12 DPVRRRLYDYVVSRDHDVSRNEAAEGAGIQRTLAAFHLDKLVDAGLLETESKRLSGRSGP 71 Query 62 GAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQA 121 GAGR AKLYRR+G + S+P R+Y A L+A EV D Sbjct 72 GAGRPAKLYRRSGAERQFSVPARDYRTAADLLA--------------EVAEVARLDTELQ 117 Query 122 MGAAATTRPPADPAAALELTLDVLRKYGYEPRRPAGPGDDEV-ELVNCPFHALAREQTEL 180 A R A P L ++L GYEPR D EV LVNCPFH L++ L Sbjct 118 AAARREGRAAACPIGDLAAAKELLAARGYEPRE-----DGEVLRLVNCPFHVLSQRHPGL 172 Query 181 ACNMNHALITGVADALAPHSPAVRLAPGPARCCVVLK 217 C MN AL+ G+ D R+ P P CCVV++ Sbjct 173 VCGMNLALLEGLLD--DAEGLRARMDPRPGLCCVVVE 207 >gi|311894415|dbj|BAJ26823.1| hypothetical protein KSE_09870 [Kitasatospora setae KM-6054] Length=226 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 99/232 (43%), Positives = 118/232 (51%), Gaps = 32/232 (13%) Query 2 DPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGP 61 DPVRR LY+ V V RD AA AVG+ R A HLDRL GLL Y R +GR+GP Sbjct 16 DPVRRALYRHVADAPEEVGRDAAAAAVGVSRTLAAHHLDRLVEAGLLVAAYRRPSGRTGP 75 Query 62 GAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQA 121 GAGR AKLYRRA +IA++LP R Y AGRL+A + + L+R D +A Sbjct 76 GAGRPAKLYRRAAAEIAVALPPRSYGTAGRLLAEVVERAG---------LDRRLQDAARA 126 Query 122 MGAAATTRPPADPAAALELTLDVLRKYGYEP-----------RRPAGPGDDEVELVNCPF 170 G T P AD A VLR+ GY P G G + + L NCPF Sbjct 127 EGERERT-PDADLPA-------VLRERGYAPYPDGPGDPGGPGGSGGSGGEVLRLRNCPF 178 Query 171 HALAREQTELACNMNHALITGVADALAPHSPAVRLAPGPARCCVVLKRCSAH 222 HALA E L C MN AL+ G LA V + PGP CCV + + H Sbjct 179 HALADEFPALVCGMNLALLEG----LAGEGWTVAMDPGPEGCCVSFSKNNIH 226 >gi|333991101|ref|YP_004523715.1| transcriptional regulator [Mycobacterium sp. JDM601] gi|333487069|gb|AEF36461.1| transcriptional regulator [Mycobacterium sp. JDM601] Length=224 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 86/218 (40%), Positives = 112/218 (52%), Gaps = 22/218 (10%) Query 2 DPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGP 61 DPVR++LY +V S PV+R+QAA A GI R A +HLD+L G+L YAR GRSGP Sbjct 20 DPVRQRLYHYVASCDEPVAREQAATAAGISRTLAAYHLDKLAEAGILSVSYARPAGRSGP 79 Query 62 GAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQA 121 GAGR AK Y R ++++S+P R Y L L+ A+ D G Sbjct 80 GAGRPAKRYARTRDELSVSVPPRNYRLLADLLVTAMA----------------DDDAGAV 123 Query 122 MGAAATTRPPADPAAALEL-TLDVLRKYGYEP-RRPAGPGDDEVELVNCPFHALAREQTE 179 A + A A E L+VLR++GYEP AG ++EL NCPF LAR TE Sbjct 124 RSAVSAAARRVGRAGATEHGVLEVLREFGYEPVVNDAG----DIELRNCPFERLARRYTE 179 Query 180 LACNMNHALITGVADALAPHSPAVRLAPGPARCCVVLK 217 C +N LI G+ + L P RCCV ++ Sbjct 180 AVCGLNLQLIEGMLEGTGEPPRRATLTPSERRCCVTVR 217 >gi|54025119|ref|YP_119361.1| hypothetical protein nfa31500 [Nocardia farcinica IFM 10152] gi|54016627|dbj|BAD57997.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=231 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 86/223 (39%), Positives = 115/223 (52%), Gaps = 17/223 (7%) Query 2 DPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGP 61 D +RR +++F+ PV+RD+AA VGI R A FHLD+L GLL Y P Sbjct 15 DELRRGMFRFIRRMRRPVTRDEAAAEVGISRKLAAFHLDKLVDAGLLRARY------ESP 68 Query 62 GA----GRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHD 117 G GR K+Y A ++ +S+P+R YE+ ++ A VL +GE + R+A Sbjct 69 GGVRRVGRAPKVYEPAETEVQVSIPERRYEVLAEILMGA-VLDEGSGERARDAAMRVAVR 127 Query 118 YGQAMGAA--ATTRPP-ADPAAALELTLDVLRKYGYEPRRPAGPGDDEVELVNCPFHALA 174 +G +G A RP P AL L ++L G+EP R G EV L NCPFH LA Sbjct 128 HGTELGERERARVRPGRLGPERALTLVQELLAAQGFEPSRD---GAGEVRLRNCPFHPLA 184 Query 175 REQTELACNMNHALITGVADALAPHSPAVRLAPGPARCCVVLK 217 R + EL C +NHA G+ LA S LAP CCV L+ Sbjct 185 RREPELVCGLNHAYCAGMLAGLAADSVEAVLAPRAGECCVALR 227 >gi|297195924|ref|ZP_06913322.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC 25486] gi|197718818|gb|EDY62726.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC 25486] Length=267 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 84/225 (38%), Positives = 114/225 (51%), Gaps = 9/225 (4%) Query 2 DPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGP 61 D +RR +Y FV PV+R++ A G+ A FHLD+L A GLL Y G P Sbjct 24 DELRRTMYGFVRRAHRPVTREEVAADAGVSVKLAAFHLDKLVAAGLLRAGYESPGGV--P 81 Query 62 GAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQA 121 GR K+Y A DI +S+P+R ++ ++ A V+ GE R A G+ Sbjct 82 RVGRRPKVYEPADTDIRISIPERRPDVLAEILIDA-VIEQEPGEDAHAAALRTARRRGEE 140 Query 122 MGAA--ATTRPP-ADPAAALELTLDVLRKYGYEPRRPAGPGDDEVELVNCPFHALAREQT 178 +GAA A +RP P ++ L+ VL ++G+EP RPA E+ L+NCPFH LA Sbjct 141 LGAATRAGSRPGRLGPERSITLSEAVLEQHGFEPDRPA---PTELRLLNCPFHPLAARSP 197 Query 179 ELACNMNHALITGVADALAPHSPAVRLAPGPARCCVVLKRCSAHD 223 L C +NHA + G L LAP P RCCV L+ S D Sbjct 198 GLVCGINHAFLGGFLAGLGTAGIDAVLAPRPGRCCVELRAASGGD 242 >gi|226359492|ref|YP_002777269.1| hypothetical protein ROP_00770 [Rhodococcus opacus B4] gi|226237976|dbj|BAH48324.1| hypothetical protein [Rhodococcus opacus B4] Length=237 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 88/216 (41%), Positives = 116/216 (54%), Gaps = 18/216 (8%) Query 2 DPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGP 61 DP+RR+LY +V PVSR+QAA AV + R A +HLD+L L+ Y R GR GP Sbjct 20 DPLRRRLYDYVTESGAPVSREQAAAAVDVGRTLAAYHLDKLADADLVTVSYQRPAGRGGP 79 Query 62 GAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQA 121 GAGR AKLY RA ++ +S+P R+YEL RL+ ++ T +N A D G+ Sbjct 80 GAGRPAKLYTRATTEMTVSVPPRDYELLARLLVTSV--EQDTSGTVRAAVNEAALDAGK- 136 Query 122 MGAAATTRPPADPAAALELTLDVLRKYGYEPRRPAGPGDD-EVELVNCPFHALAREQTEL 180 R AD L L LR GY P+ GDD ++L NCPFH +AR+ ++ Sbjct 137 -------RAAADTGGDL---LAALRGCGYLPQ----VGDDGRIDLRNCPFHHVARDHLDV 182 Query 181 ACNMNHALITGVADALAPHSPAVRLAPGPARCCVVL 216 C +N L+ GV A H L P P RCCVV+ Sbjct 183 VCGLNLRLVQGVIAGSAGHDAHAELDPRPDRCCVVV 218 >gi|256391831|ref|YP_003113395.1| transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256358057|gb|ACU71554.1| putative transcriptional regulator [Catenulispora acidiphila DSM 44928] Length=244 Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 77/200 (39%), Positives = 100/200 (50%), Gaps = 9/200 (4%) Query 18 PVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGPGAGRTAKLYRRAGRDI 77 PV+R++ A G+ A FHLD+L GLL T Y G GR K+Y G DI Sbjct 40 PVTREEVAADSGVSVKLAAFHLDKLVEAGLLRTRYETPAGVRK--VGRRPKVYEPTGTDI 97 Query 78 ALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQAMGAA--ATTRPP-ADP 134 +S+P+R ++ ++ A++ G L R AH G +G+A A TRP P Sbjct 98 HISIPERRPDVIAEILIDAVLTEHQEGSARAAAL-RTAHRRGHDVGSAERARTRPGRLGP 156 Query 135 AAALELTLDVLRKYGYEPRRPAGPGDDEVELVNCPFHALAREQTELACNMNHALITGVAD 194 +L VL YG+EP R A + L+NCPFH L TEL C +NHA +TGV D Sbjct 157 ERSLNAVEPVLESYGFEPDRQA---PTTLRLLNCPFHHLTARDTELVCGINHAFLTGVLD 213 Query 195 ALAPHSPAVRLAPGPARCCV 214 L LAP P RCCV Sbjct 214 GLETTGINAVLAPHPGRCCV 233 >gi|134101225|ref|YP_001106886.1| putative transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291007785|ref|ZP_06565758.1| putative transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133913848|emb|CAM03961.1| putative transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length=239 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 81/216 (38%), Positives = 102/216 (48%), Gaps = 9/216 (4%) Query 5 RRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGPGAG 64 RR +Y+F+ PV RD+AA AVGI R A FHLD+L GLL + + G G Sbjct 25 RRGMYEFIRRARRPVGRDEAAAAVGISRKLAAFHLDKLVDAGLLCARFEPVGGIRK--VG 82 Query 65 RTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQAMGA 124 RT K+Y A I +S+P R +L ++ A VL+ E E R A + G +G Sbjct 83 RTPKVYEPADTHIGVSIPPRRPDLLADVLLDA-VLTEGEQETAAEAAMRTARERGHRLGT 141 Query 125 AATTRP-PADPAAALELTL--DVLRKYGYEPRRPAGPGDDEVELVNCPFHALAREQTELA 181 R P A LT D L YG+EP R V L NCPFH L + EL Sbjct 142 EERDRSRPGRLGAERTLTKAEDTLAGYGFEPDRET---PTCVRLRNCPFHPLTAKSPELV 198 Query 182 CNMNHALITGVADALAPHSPAVRLAPGPARCCVVLK 217 C +NHA + G L S L P P CCV L+ Sbjct 199 CGLNHAFLRGFLAGLQARSVEAVLEPRPGECCVTLR 234 >gi|254822072|ref|ZP_05227073.1| hypothetical protein MintA_19212 [Mycobacterium intracellulare ATCC 13950] Length=77 Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 54/75 (72%), Positives = 61/75 (82%), Gaps = 4/75 (5%) Query 142 LDVLRKYGYEPRRPAGPGDDEVELVNCPFHALAREQTELACNMNHALITGVADALAPHSP 201 +++L ++GYEPR GD EVEL NCPFHALA+EQTELAC MNHALI+GVADALAPH P Sbjct 2 VELLSRHGYEPRY----GDGEVELANCPFHALAQEQTELACTMNHALISGVADALAPHGP 57 Query 202 AVRLAPGPARCCVVL 216 RL PGP RCCVVL Sbjct 58 NARLCPGPDRCCVVL 72 >gi|302532361|ref|ZP_07284703.1| predicted protein [Streptomyces sp. C] gi|302441256|gb|EFL13072.1| predicted protein [Streptomyces sp. C] Length=232 Score = 111 bits (278), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 84/213 (40%), Positives = 112/213 (53%), Gaps = 18/213 (8%) Query 10 QFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGPGAGRTAKL 69 ++V +Q VSR +AA+A G+ R A HLD+LT GLL++ RLTGRSGPGAGR AK+ Sbjct 26 EYVVAQGREVSRKEAAEAAGVARTLAAHHLDKLTGAGLLESGSRRLTGRSGPGAGRPAKV 85 Query 70 YRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQAMGAAATTR 129 Y RA + ++SLP R+Y L AA ++ A G L A G+A+ R Sbjct 86 YTRARTEWSVSLPARDY-----LTAAELLAEAAEGAGLDAGLCAAARRRGEAL------R 134 Query 130 PPADPAAALELTLDVLRKYGYEPRRPAGPGDDE-----VELVNCPFHALAREQTELACNM 184 P P L+ + VL GYEP G G+ V + NCPFHA+A L C M Sbjct 135 GPGAPCGGLDEAMAVLAARGYEPHLEGGRGEGGGEPPVVRMRNCPFHAVAERFPPLVCGM 194 Query 185 NHALITGVADALAPHSPAVRLAPGPARCCVVLK 217 N AL+ G+ P R+ P CCVV++ Sbjct 195 NLALLEGLIGTDGPVR--ARMDARPGECCVVVE 225 >gi|108797700|ref|YP_637897.1| putative transcriptional regulator [Mycobacterium sp. MCS] gi|119866789|ref|YP_936741.1| putative transcriptional regulator [Mycobacterium sp. KMS] gi|126433326|ref|YP_001069017.1| putative transcriptional regulator [Mycobacterium sp. JLS] gi|108768119|gb|ABG06841.1| putative transcriptional regulator [Mycobacterium sp. MCS] gi|119692878|gb|ABL89951.1| putative transcriptional regulator [Mycobacterium sp. KMS] gi|126233126|gb|ABN96526.1| putative transcriptional regulator [Mycobacterium sp. JLS] Length=234 Score = 111 bits (277), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 79/220 (36%), Positives = 110/220 (50%), Gaps = 15/220 (6%) Query 2 DPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGP 61 D +RR+LY++ + PVSRD+AA AVGI R A FHLD+L GLL R + Sbjct 21 DDLRRRLYEYARDERRPVSRDEAASAVGISRKLAAFHLDKLVDVGLLRF---RFLQPAEA 77 Query 62 GAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQA 121 GR K+Y A + A+S+P R +L ++A A++ G+ T + + + Sbjct 78 RVGRPPKVYAPADAEFAVSIPARRPDLLADILAHAVL---DDGDRTSARAAAVRVAHQRG 134 Query 122 MGAAATTRPP----ADPAAALELTLDVLRKYGYEPRRP-AGPGDDEVELVNCPFHALARE 176 + A + P AL L ++L YG+EP R AG + L NCPFH LARE Sbjct 135 VDATTAVKRPRGGRIGAERALRLAEELLVDYGFEPYRARAGC----IRLRNCPFHPLARE 190 Query 177 QTELACNMNHALITGVADALAPHSPAVRLAPGPARCCVVL 216 EL C +NHA + G D L + L+P CCV L Sbjct 191 LPELVCRLNHAFLAGALDGLGADTVEAVLSPVAGECCVEL 230 >gi|302525641|ref|ZP_07277983.1| conserved hypothetical protein [Streptomyces sp. AA4] gi|302434536|gb|EFL06352.1| conserved hypothetical protein [Streptomyces sp. AA4] Length=250 Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 79/218 (37%), Positives = 108/218 (50%), Gaps = 10/218 (4%) Query 4 VRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGPGA 63 +RR +Y F+ PV+R++AA AVGI R A FHLD+L GLL Y + G Sbjct 32 LRRGMYAFIRDAGRPVTREEAAAAVGISRKLAAFHLDKLVTAGLLRARYETVGGVR--KV 89 Query 64 GRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQAMG 123 GR K+Y A D A+++P R+ ++ ++ A+ SA GEP + R A +G A G Sbjct 90 GRAPKVYEPAPTDFAITIPPRQPDVLAAILVDAVA-SAAPGEPARDAALREAGRHGSAAG 148 Query 124 AAATTRP-PADPAA--ALELTLDVLRKYGYEPRRPAGPGDDEVELVNCPFHALAREQTEL 180 AA R P L LT VL ++G+EP R + L NCPF LA +L Sbjct 149 AAERERSRPGRLGTERGLTLTSTVLARHGFEPNRET---PVCLRLRNCPFQPLAGRAPDL 205 Query 181 ACNMNHALITGVADAL-APHSPAVRLAPGPARCCVVLK 217 C M + GV + L P R+AP CCV L+ Sbjct 206 VCGMTDRFLNGVVEGLQVPGVTTARVAPRDGGCCVELR 243 >gi|111025061|ref|YP_707481.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110824040|gb|ABG99323.1| possible transcriptional regulator [Rhodococcus jostii RHA1] Length=236 Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 81/212 (39%), Positives = 109/212 (52%), Gaps = 16/212 (7%) Query 2 DPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGP 61 DP+RR+LY +V PVSR+QAA AV + R A +HLD+L L+ Y R GR GP Sbjct 20 DPLRRRLYDYVTESDAPVSREQAAAAVDVGRTLAAYHLDKLADADLVTVSYQRPAGRGGP 79 Query 62 GAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQA 121 GAGR AK Y RA ++ +S+P R+YEL RL+ +++ T +N A D G+ Sbjct 80 GAGRPAKFYTRATTEMTVSVPPRDYELLARLLVSSV--EQDTSGTVRAAVNEAALDAGK- 136 Query 122 MGAAATTRPPADPAAALELTLDVLRKYGYEPRRPAGPGDDEVELVNCPFHALAREQTELA 181 R AD L L LR GY P+ D ++L NCPFH +AR+ ++ Sbjct 137 -------RAVADTGGDL---LAALRGCGYLPQV---ADDGRIDLRNCPFHHVARDHLDVV 183 Query 182 CNMNHALITGVADALAPHSPAVRLAPGPARCC 213 C +N L+ G H L P P RCC Sbjct 184 CGLNLRLVEGAIAGSTQHDAHAELDPRPDRCC 215 >gi|289766909|ref|ZP_06526287.1| transcriptional regulator [Streptomyces lividans TK24] gi|289697108|gb|EFD64537.1| transcriptional regulator [Streptomyces lividans TK24] Length=234 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 87/215 (41%), Positives = 111/215 (52%), Gaps = 19/215 (8%) Query 2 DPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGP 61 DPVRR+LY +V + V R+ AA A GI R A +HLD+L GLL YAR GR GP Sbjct 20 DPVRRRLYDYVRTCDEAVGREDAAQAAGISRTLAAYHLDKLAEAGLLTVGYARAAGRGGP 79 Query 62 GAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQA 121 GAGR AK Y R +++++S+P R+Y L ++A A+ + Sbjct 80 GAGRPAKRYTRTDQELSVSVPPRDYGLLAGVLAEAVAADGSG----------------AV 123 Query 122 MGAAATTRPPADPAAALELTLDVLRKYGYEPRRPAGPGDDEVELVNCPFHALAREQTELA 181 A A A +A E LR GYEP AG ++L NCPFH LARE TEL Sbjct 124 REAVAAAAHAAGRSAGGEDLTAALRGCGYEPATTAG---GSIDLRNCPFHRLAREHTELV 180 Query 182 CNMNHALITGVADALAPHSPAVRLAPGPARCCVVL 216 C +N L+ GV +A LAP P RCCVV+ Sbjct 181 CWLNLHLVRGVLEAGGHQPGRAVLAPRPGRCCVVV 215 >gi|291435133|ref|ZP_06574523.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291338028|gb|EFE64984.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length=239 Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 80/215 (38%), Positives = 105/215 (49%), Gaps = 9/215 (4%) Query 5 RRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGPGAG 64 RR+++ FV V+RD+AA +VGI R A FHLD+L GLL YA G G Sbjct 16 RRRMFAFVRRAGHAVTRDEAAASVGISRKLAAFHLDKLVDVGLLRAYYATPAGIRK--VG 73 Query 65 RTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQAMGA 124 R K+Y I +S+P R +EL L+ A++ E + R A G+ MG Sbjct 74 RRPKVYEPTDAQITVSIPDRRHELLADLLLDAVLTEGAD-ESAAQAAVRTAGHRGRWMGE 132 Query 125 AA--TTRPP-ADPAAALELTLDVLRKYGYEPRRPAGPGDDEVELVNCPFHALAREQTELA 181 AA TRP P L + +L +YGYEP R + L NCPFH LA + +L Sbjct 133 AAREETRPGRLGPERGLTVCERLLEQYGYEPVRET---PTRLRLRNCPFHPLAAKAPDLV 189 Query 182 CNMNHALITGVADALAPHSPAVRLAPGPARCCVVL 216 C MN A ++G + L LAP P CCV L Sbjct 190 CGMNQAFLSGYLNGLQVSGVQAVLAPEPGECCVRL 224 >gi|117928871|ref|YP_873422.1| putative transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117649334|gb|ABK53436.1| putative transcriptional regulator [Acidothermus cellulolyticus 11B] Length=209 Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 83/217 (39%), Positives = 110/217 (51%), Gaps = 21/217 (9%) Query 2 DPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGP 61 +P RR++Y+ V + + P++RD A VGI R A FHL+ L GLLD +AR GR GP Sbjct 7 EPTRRRVYEAVRAAARPLTRDDVAQLVGIGRPLATFHLEALARTGLLDVTFARPAGRGGP 66 Query 62 GAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQA 121 GAGR AK Y RD+ SLP R YELA ++ ++ + T E L A + G+ Sbjct 67 GAGRPAKWYAVRNRDVIASLPPRRYELAAEILLRSVCAARATAE-----LCAAAVEVGRR 121 Query 122 MGAAATTRPPADPAAALELTLD-VLRKYGYEPRRPAGPGDDEVELVNCPFHALAREQTEL 180 +G T RP LD VL + GY+P D NCPFHAL E Sbjct 122 LGGTLTGRP-----------LDEVLTRLGYQPIER----DGGHAFANCPFHALVEADAET 166 Query 181 ACNMNHALITGVADALAPHSPAVRLAPGPARCCVVLK 217 C MN +L+TG+ + L + P P CCV L+ Sbjct 167 VCAMNQSLVTGLLEGLGIKELDAVVDPLPGGCCVRLR 203 >gi|51893171|ref|YP_075862.1| hypothetical protein STH2033 [Symbiobacterium thermophilum IAM 14863] gi|51856860|dbj|BAD41018.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM 14863] Length=242 Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 67/213 (32%), Positives = 104/213 (49%), Gaps = 19/213 (8%) Query 2 DPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGP 61 DP R +YQ+V PVS + A + + A+ HL+RLT GLL + TGR Sbjct 14 DPTRYSIYQYVLVAPDPVSAAEVARRFDLHPNVARMHLNRLTEVGLLRQRTEK-TGR--- 69 Query 62 GAGRTAKLYRRAGRDIAL-SLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQ 120 GR + +Y +G ++L ++P R+++L L+ ++ L G+ VE +I H +G+ Sbjct 70 -GGRPSYVYEPSGSAVSLTTVPPRDFQLLADLLVQSLALLGEGGKEAVE---QIGHSFGR 125 Query 121 AMGAAATTR--PPAD-------PAAALELTLDVLRKYGYEPRRPAGPGDD-EVELVNCPF 170 +G A ++ P + P A LE L + G R GPGD + L +C F Sbjct 126 RLGQEALSKLAPSLNAANGATGPQALLEACAMALSRLGVSARVIKGPGDRPSLVLKSCGF 185 Query 171 HALAREQTELACNMNHALITGVADALAPHSPAV 203 H +A E C++ A++ GVA A PAV Sbjct 186 HEVASAHPEQVCHLCKAMVEGVAQTCAEVPPAV 218 >gi|312110236|ref|YP_003988552.1| ArsR fmaily transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|336234700|ref|YP_004587316.1| putative transcriptional regulator [Geobacillus thermoglucosidasius C56-YS93] gi|311215337|gb|ADP73941.1| putative transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|335361555|gb|AEH47235.1| putative transcriptional regulator [Geobacillus thermoglucosidasius C56-YS93] Length=232 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/207 (26%), Positives = 98/207 (48%), Gaps = 22/207 (10%) Query 2 DPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGP 61 DP R +Y+++ VS + A+A I + A+ HL +L ++ +E T ++G Sbjct 13 DPTRYHIYEYIIKNHKKVSVQEIAEAFNIHPNVARLHLTKLEDVHMIVSE----TQKTGK 68 Query 62 GAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQA 121 G GR ++LYR + I L P R+Y+L ++ ++ G+ + ++ G+A Sbjct 69 G-GRPSRLYRLSDDVIQLYFPFRDYQLLSKIAIQTMMKLGNAGKQAL-------YETGKA 120 Query 122 MGAA-ATTRPPADP-------AAALELTLDVLRKYGYEPRRPAGPGDDE--VELVNCPFH 171 G R P D A +E+ D G+ P + + +++ NCPF Sbjct 121 FGKELVAQRIPHDKSPQQLTFAEKMEIIKDAAETAGFYPTLEYNEKEKKMYLQIFNCPFK 180 Query 172 ALAREQTELACNMNHALITGVADALAP 198 +A +++E+ C M+HA + G+ + L P Sbjct 181 EIAMQESEVTCQMHHAFLQGMFEILFP 207 >gi|239827711|ref|YP_002950335.1| transcriptional regulator [Geobacillus sp. WCH70] gi|239808004|gb|ACS25069.1| putative transcriptional regulator [Geobacillus sp. WCH70] Length=232 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/221 (27%), Positives = 104/221 (48%), Gaps = 22/221 (9%) Query 2 DPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGP 61 DP R +Y+++ + VS + A+A I + A+ HL +L ++ +E T ++G Sbjct 13 DPTRYHIYEYITKKHKKVSVQEIAEAFNIHPNVARLHLTKLEDVNMIVSE----TQKTGK 68 Query 62 GAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQA 121 G GR ++LYR + + I L P R+Y+L ++ AI A G+ + L ++G+ Sbjct 69 G-GRPSRLYRLSDKVIQLHFPFRDYQLLSKI---AIQTMAKLGDVGKQALYETGKNFGKE 124 Query 122 MGAAATTRPPADPAAALELTLDVLRKYGYEPRRPAG----------PGDDEVELVNCPFH 171 + A R P D + ELT + E AG G +++ NCPF Sbjct 125 LVAQ---RIPHDQSVQ-ELTFAEKAEIVKEAAEAAGLYPTFEYNEKEGKIYLQVFNCPFK 180 Query 172 ALAREQTELACNMNHALITGVADALAPHSPAVRLAPGPARC 212 +A ++ E+ C M++A + G+ + L P+ V + C Sbjct 181 EIAFQEPEIICQMHYAFLQGMFEVLFPNVELVEMENMMKGC 221 >gi|212638745|ref|YP_002315265.1| ArsR family transcriptional regulator [Anoxybacillus flavithermus WK1] gi|212560225|gb|ACJ33280.1| Transcriptional regulator, ArsR family [Anoxybacillus flavithermus WK1] Length=232 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 58/217 (27%), Positives = 101/217 (47%), Gaps = 14/217 (6%) Query 2 DPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGP 61 DP R ++YQ++ + V+ + ADA I + A+ HL +L +L +E T ++G Sbjct 13 DPTRYEIYQYIARKHQEVTVQEIADAFHIHPNVARLHLTKLEDVNMLVSE----TKKTGK 68 Query 62 GAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQA 121 G GR ++LYR + I L P R+Y+L ++ A++ GE + L +GQ Sbjct 69 G-GRPSRLYRLSDDVIQLHFPFRDYQLLSKIAIHAMM---KLGEAGKQALYETGKLFGQE 124 Query 122 MGAAATTRPPADPAAALELTLDVLRK----YGYEP--RRPAGPGDDEVELVNCPFHALAR 175 + A ++E +++L+K G+ P G E+ NCPF LA Sbjct 125 LVQQHVQSMQALEQLSVEEKMNILQKAAEAAGFYPTFHYSENQGKIYFEIFNCPFKELAF 184 Query 176 EQTELACNMNHALITGVADALAPHSPAVRLAPGPARC 212 + C M++A + G+ + L ++ V P+ C Sbjct 185 AHPDSICYMHNAFLKGMLEVLFTNAELVTEEIMPSGC 221 >gi|169829075|ref|YP_001699233.1| hypothetical protein Bsph_3617 [Lysinibacillus sphaericus C3-41] gi|168993563|gb|ACA41103.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length=236 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/218 (24%), Positives = 95/218 (44%), Gaps = 15/218 (6%) Query 2 DPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGP 61 D R +Y+++ + V+ AD I + A+ HL +L+ ++ +Y ++G Sbjct 13 DETRYSIYEYILQEKKTVTVQHIADQFSIHPNVARLHLTKLSEINIISADYV----KTGK 68 Query 62 GAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYG-- 119 G GR ++Y+ + + ++LS P+R+ RL+ I L G +E I++ G Sbjct 69 G-GRPGRVYKASEKGVSLSFPRRD---EDRLLKWTIQLVEELGPSVLEKCQEISYQDGYQ 124 Query 120 ---QAMGAAATTRPPADPAAALELTLDVLRKYGYEPRRPAGPGDDEV--ELVNCPFHALA 174 Q M A T L+L D GY P+ +V + NCPF Sbjct 125 QMKQNMNAELTINNSLSFDEKLQLLTDNAALIGYVPQIQQTEHGKKVIFSIFNCPFQEQL 184 Query 175 REQTELACNMNHALITGVADALAPHSPAVRLAPGPARC 212 +E+ C+++ + + G DAL ++ V++ C Sbjct 185 TTYSEIVCSLHESYLKGQLDALFSNNEFVQIESMIHNC 222 >gi|319651533|ref|ZP_08005661.1| transcriptional regulator [Bacillus sp. 2_A_57_CT2] gi|317396848|gb|EFV77558.1| transcriptional regulator [Bacillus sp. 2_A_57_CT2] Length=232 Score = 75.1 bits (183), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 51/201 (26%), Positives = 91/201 (46%), Gaps = 14/201 (6%) Query 2 DPVRRQLYQFVCSQSMPVSRDQAADAVGIPRHQAKFHLDRLTAEGLLDTEYARLTGRSGP 61 DP R +YQ++ + V+ + AD I + A+ HL +L +L +E T ++G Sbjct 13 DPTRYYIYQYITKRHKDVTVQEIADNFSIHPNVARLHLSKLEDVNMLVSE----TKKTGK 68 Query 62 GAGRTAKLYRRAGRDIALSLPQREYELAGRLMAAAIVLSATTGEPTVEVLNRIAHDYGQA 121 G GR ++LYR + I L P R+Y+L ++ ++ GE + L +G+ Sbjct 69 G-GRPSRLYRLSDDVIQLHFPYRDYQLLAKITMETML---ELGEEGRKALYSTGKKFGRE 124 Query 122 MGAAATTRPPADPAAALELTLDVLRK----YGYEPRRPAGPGDDEV--ELVNCPFHALAR 175 + R + L++L+ G+ P A V ++ NCPF +A Sbjct 125 LIQQELKRFAGTEKLTFDQKLNILKHAADMSGFHPEFDANAEKTIVYFQIYNCPFKEVAA 184 Query 176 EQTELACNMNHALITGVADAL 196 E CNM++ + G+ ++L Sbjct 185 RHREPVCNMHNEYLKGMFESL 205 Lambda K H 0.320 0.134 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 289298170616 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40