BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2621c

Length=224
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609758|ref|NP_217137.1|  transcriptional regulatory protein ...   444    5e-123
gi|289746419|ref|ZP_06505797.1|  hypothetical transcriptional reg...   443    1e-122
gi|254365289|ref|ZP_04981334.1|  hypothetical transcriptional reg...   442    2e-122
gi|254232735|ref|ZP_04926062.1|  hypothetical protein TBCG_02563 ...   436    2e-120
gi|31793807|ref|NP_856300.1|  transcriptional regulatory protein ...   413    1e-113
gi|289762795|ref|ZP_06522173.1|  hypothetical transcriptional reg...   409    1e-112
gi|167967284|ref|ZP_02549561.1|  hypothetical transcriptional reg...   408    3e-112
gi|254818987|ref|ZP_05223988.1|  hypothetical protein MintA_03626...   290    2e-76 
gi|342858553|ref|ZP_08715208.1|  hypothetical protein MCOL_06746 ...   289    2e-76 
gi|118618607|ref|YP_906939.1|  transcriptional regulator [Mycobac...   287    6e-76 
gi|296170896|ref|ZP_06852433.1|  regulatory protein [Mycobacteriu...   275    5e-72 
gi|41408823|ref|NP_961659.1|  hypothetical protein MAP2725c [Myco...   271    4e-71 
gi|118465695|ref|YP_882681.1|  hypothetical protein MAV_3499 [Myc...   271    6e-71 
gi|333991045|ref|YP_004523659.1|  transcriptional regulator [Myco...   236    3e-60 
gi|120406790|ref|YP_956619.1|  putative transcriptional regulator...   230    1e-58 
gi|119714163|ref|YP_919305.1|  transcriptional regulator [Nocardi...   214    1e-53 
gi|108802250|ref|YP_642447.1|  transcriptional regulator [Mycobac...   202    2e-50 
gi|240170647|ref|ZP_04749306.1|  transcriptional regulator [Mycob...   197    1e-48 
gi|118473036|ref|YP_885519.1|  ArsR family transcriptional regula...   177    1e-42 
gi|331698394|ref|YP_004334633.1|  putative transcriptional regula...   172    5e-41 
gi|329939761|ref|ZP_08289062.1|  transcriptional regulator [Strep...   170    1e-40 
gi|336118919|ref|YP_004573691.1|  hypothetical protein MLP_32740 ...   164    9e-39 
gi|257057835|ref|YP_003135667.1|  putative transcriptional regula...   162    3e-38 
gi|111025043|ref|YP_707463.1|  MarR family transcriptional regula...   160    1e-37 
gi|119716337|ref|YP_923302.1|  transcriptional regulator [Nocardi...   157    1e-36 
gi|337763346|emb|CCB72054.1|  Transcriptional regulator [Streptom...   152    3e-35 
gi|226359477|ref|YP_002777254.1|  SufR family transcriptional reg...   152    4e-35 
gi|117927709|ref|YP_872260.1|  transcriptional regulator [Acidoth...   140    1e-31 
gi|119718524|ref|YP_925489.1|  transcriptional regulator [Nocardi...   139    3e-31 
gi|331697010|ref|YP_004333249.1|  putative transcriptional regula...   137    8e-31 
gi|296271191|ref|YP_003653823.1|  putative transcriptional regula...   131    6e-29 
gi|326384562|ref|ZP_08206241.1|  transcriptional regulator [Gordo...   130    1e-28 
gi|72163192|ref|YP_290849.1|  transcriptional regulator [Thermobi...   126    2e-27 
gi|145595458|ref|YP_001159755.1|  hypothetical protein Strop_2939...   117    1e-24 
gi|226359496|ref|YP_002777273.1|  SufR family transcriptional reg...   115    3e-24 
gi|317125120|ref|YP_004099232.1|  transcriptional regulator [Intr...   111    9e-23 
gi|54022958|ref|YP_117200.1|  hypothetical protein nfa9910 [Nocar...   110    2e-22 
gi|328757873|gb|EGF71489.1|  transcriptional regulator, ArsR fami...   109    4e-22 
gi|50841582|ref|YP_054809.1|  putative regulatory protein [Propio...   108    7e-22 
gi|145224071|ref|YP_001134749.1|  putative transcriptional regula...   107    2e-21 
gi|111025065|ref|YP_707485.1|  ArsR family transcriptional regula...   105    4e-21 
gi|119718200|ref|YP_925165.1|  transcriptional regulator [Nocardi...   105    4e-21 
gi|295129622|ref|YP_003580285.1|  transcriptional regulator, ArsR...   105    6e-21 
gi|282853138|ref|ZP_06262475.1|  transcriptional regulator, ArsR ...   105    7e-21 
gi|159038691|ref|YP_001537944.1|  transcriptional regulator TrmB ...   105    7e-21 
gi|327334654|gb|EGE76365.1|  putative regulatory protein [Propion...   104    1e-20 
gi|313835077|gb|EFS72791.1|  conserved hypothetical protein [Prop...   104    1e-20 
gi|258653779|ref|YP_003202935.1|  transcriptional regulator [Naka...   102    3e-20 
gi|340771973|gb|EGR94487.1|  hypothetical protein HMPREF1162_1503...   102    3e-20 
gi|258653796|ref|YP_003202952.1|  transcriptional regulator [Naka...   102    4e-20 


>gi|15609758|ref|NP_217137.1| transcriptional regulatory protein [Mycobacterium tuberculosis 
H37Rv]
 gi|15842161|ref|NP_337198.1| hypothetical protein MT2696 [Mycobacterium tuberculosis CDC1551]
 gi|148662461|ref|YP_001283984.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis 
H37Ra]
 54 more sequence titles
 Length=224

 Score =  444 bits (1142),  Expect = 5e-123, Method: Compositional matrix adjust.
 Identities = 224/224 (100%), Positives = 224/224 (100%), Gaps = 0/224 (0%)

Query  1    MGVSVIIRSLQEPVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQV  60
            MGVSVIIRSLQEPVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQV
Sbjct  1    MGVSVIIRSLQEPVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQV  60

Query  61   ERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWG  120
            ERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWG
Sbjct  61   ERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWG  120

Query  121  RQLEAPPAGADTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVC  180
            RQLEAPPAGADTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVC
Sbjct  121  RQLEAPPAGADTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVC  180

Query  181  PVHLGIMRGALQTWGAPVTVDRLDAFVEPDLCLAHFTPLEGAIR  224
            PVHLGIMRGALQTWGAPVTVDRLDAFVEPDLCLAHFTPLEGAIR
Sbjct  181  PVHLGIMRGALQTWGAPVTVDRLDAFVEPDLCLAHFTPLEGAIR  224


>gi|289746419|ref|ZP_06505797.1| hypothetical transcriptional regulatory protein [Mycobacterium 
tuberculosis 02_1987]
 gi|289758752|ref|ZP_06518130.1| transcriptional regulatory protein [Mycobacterium tuberculosis 
T85]
 gi|298526097|ref|ZP_07013506.1| transcriptional regulator [Mycobacterium tuberculosis 94_M4241A]
 6 more sequence titles
 Length=224

 Score =  443 bits (1139),  Expect = 1e-122, Method: Compositional matrix adjust.
 Identities = 223/224 (99%), Positives = 223/224 (99%), Gaps = 0/224 (0%)

Query  1    MGVSVIIRSLQEPVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQV  60
            MGVSVIIRSLQEPVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQV
Sbjct  1    MGVSVIIRSLQEPVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQV  60

Query  61   ERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWG  120
            ERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSR MALSAGRAWG
Sbjct  61   ERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRVMALSAGRAWG  120

Query  121  RQLEAPPAGADTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVC  180
            RQLEAPPAGADTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVC
Sbjct  121  RQLEAPPAGADTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVC  180

Query  181  PVHLGIMRGALQTWGAPVTVDRLDAFVEPDLCLAHFTPLEGAIR  224
            PVHLGIMRGALQTWGAPVTVDRLDAFVEPDLCLAHFTPLEGAIR
Sbjct  181  PVHLGIMRGALQTWGAPVTVDRLDAFVEPDLCLAHFTPLEGAIR  224


>gi|254365289|ref|ZP_04981334.1| hypothetical transcriptional regulatory protein [Mycobacterium 
tuberculosis str. Haarlem]
 gi|134150802|gb|EBA42847.1| hypothetical transcriptional regulatory protein [Mycobacterium 
tuberculosis str. Haarlem]
Length=224

 Score =  442 bits (1137),  Expect = 2e-122, Method: Compositional matrix adjust.
 Identities = 223/224 (99%), Positives = 223/224 (99%), Gaps = 0/224 (0%)

Query  1    MGVSVIIRSLQEPVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQV  60
            MGVSVIIRSLQEPVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQV
Sbjct  1    MGVSVIIRSLQEPVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQV  60

Query  61   ERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWG  120
            ERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWG
Sbjct  61   ERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWG  120

Query  121  RQLEAPPAGADTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVC  180
            RQLEAPPAGADTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVC
Sbjct  121  RQLEAPPAGADTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVC  180

Query  181  PVHLGIMRGALQTWGAPVTVDRLDAFVEPDLCLAHFTPLEGAIR  224
            PVHLGIMRG LQTWGAPVTVDRLDAFVEPDLCLAHFTPLEGAIR
Sbjct  181  PVHLGIMRGDLQTWGAPVTVDRLDAFVEPDLCLAHFTPLEGAIR  224


>gi|254232735|ref|ZP_04926062.1| hypothetical protein TBCG_02563 [Mycobacterium tuberculosis C]
 gi|124601794|gb|EAY60804.1| hypothetical protein TBCG_02563 [Mycobacterium tuberculosis C]
Length=253

 Score =  436 bits (1120),  Expect = 2e-120, Method: Compositional matrix adjust.
 Identities = 218/218 (100%), Positives = 218/218 (100%), Gaps = 0/218 (0%)

Query  1    MGVSVIIRSLQEPVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQV  60
            MGVSVIIRSLQEPVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQV
Sbjct  1    MGVSVIIRSLQEPVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQV  60

Query  61   ERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWG  120
            ERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWG
Sbjct  61   ERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWG  120

Query  121  RQLEAPPAGADTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVC  180
            RQLEAPPAGADTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVC
Sbjct  121  RQLEAPPAGADTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVC  180

Query  181  PVHLGIMRGALQTWGAPVTVDRLDAFVEPDLCLAHFTP  218
            PVHLGIMRGALQTWGAPVTVDRLDAFVEPDLCLAHFTP
Sbjct  181  PVHLGIMRGALQTWGAPVTVDRLDAFVEPDLCLAHFTP  218


>gi|31793807|ref|NP_856300.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97]
 gi|121638510|ref|YP_978734.1| putative transcriptional regulatory protein [Mycobacterium bovis 
BCG str. Pasteur 1173P2]
 gi|224991004|ref|YP_002645691.1| putative transcriptional regulatory protein [Mycobacterium bovis 
BCG str. Tokyo 172]
 gi|31619401|emb|CAD94839.1| POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium bovis 
AF2122/97]
 gi|121494158|emb|CAL72636.1| Possible transcriptional regulatory protein [Mycobacterium bovis 
BCG str. Pasteur 1173P2]
 gi|224774117|dbj|BAH26923.1| putative transcriptional regulatory protein [Mycobacterium bovis 
BCG str. Tokyo 172]
 gi|341602548|emb|CCC65224.1| possible transcriptional regulatory protein [Mycobacterium bovis 
BCG str. Moreau RDJ]
Length=223

 Score =  413 bits (1061),  Expect = 1e-113, Method: Compositional matrix adjust.
 Identities = 223/224 (99%), Positives = 223/224 (99%), Gaps = 1/224 (0%)

Query  1    MGVSVIIRSLQEPVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQV  60
            MGVSVIIRSLQEPVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQV
Sbjct  1    MGVSVIIRSLQEPVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQV  60

Query  61   ERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWG  120
            ERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWG
Sbjct  61   ERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWG  120

Query  121  RQLEAPPAGADTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVC  180
            RQLEAPPAGADTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVC
Sbjct  121  RQLEAPPAGADTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVC  180

Query  181  PVHLGIMRGALQTWGAPVTVDRLDAFVEPDLCLAHFTPLEGAIR  224
            PVHLGIMRGALQTW APVTVDRLDAFVEPDLCLAHFTPLEGAIR
Sbjct  181  PVHLGIMRGALQTW-APVTVDRLDAFVEPDLCLAHFTPLEGAIR  223


>gi|289762795|ref|ZP_06522173.1| hypothetical transcriptional regulatory protein [Mycobacterium 
tuberculosis GM 1503]
 gi|289710301|gb|EFD74317.1| hypothetical transcriptional regulatory protein [Mycobacterium 
tuberculosis GM 1503]
Length=221

 Score =  409 bits (1052),  Expect = 1e-112, Method: Compositional matrix adjust.
 Identities = 205/205 (100%), Positives = 205/205 (100%), Gaps = 0/205 (0%)

Query  20   VLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLMFRA  79
            VLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLMFRA
Sbjct  17   VLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLMFRA  76

Query  80   VRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWGRQLEAPPAGADTEETIDHL  139
            VRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWGRQLEAPPAGADTEETIDHL
Sbjct  77   VRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWGRQLEAPPAGADTEETIDHL  136

Query  140  VAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGAPVT  199
            VAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGAPVT
Sbjct  137  VAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGAPVT  196

Query  200  VDRLDAFVEPDLCLAHFTPLEGAIR  224
            VDRLDAFVEPDLCLAHFTPLEGAIR
Sbjct  197  VDRLDAFVEPDLCLAHFTPLEGAIR  221


>gi|167967284|ref|ZP_02549561.1| hypothetical transcriptional regulatory protein [Mycobacterium 
tuberculosis H37Ra]
Length=205

 Score =  408 bits (1049),  Expect = 3e-112, Method: Compositional matrix adjust.
 Identities = 204/205 (99%), Positives = 205/205 (100%), Gaps = 0/205 (0%)

Query  20   VLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLMFRA  79
            +LRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLMFRA
Sbjct  1    MLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLMFRA  60

Query  80   VRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWGRQLEAPPAGADTEETIDHL  139
            VRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWGRQLEAPPAGADTEETIDHL
Sbjct  61   VRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWGRQLEAPPAGADTEETIDHL  120

Query  140  VAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGAPVT  199
            VAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGAPVT
Sbjct  121  VAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGAPVT  180

Query  200  VDRLDAFVEPDLCLAHFTPLEGAIR  224
            VDRLDAFVEPDLCLAHFTPLEGAIR
Sbjct  181  VDRLDAFVEPDLCLAHFTPLEGAIR  205


>gi|254818987|ref|ZP_05223988.1| hypothetical protein MintA_03626 [Mycobacterium intracellulare 
ATCC 13950]
Length=247

 Score =  290 bits (741),  Expect = 2e-76, Method: Compositional matrix adjust.
 Identities = 149/218 (69%), Positives = 171/218 (79%), Gaps = 6/218 (2%)

Query  12   EPVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPG  71
            E  GRRRAV+R L AS  PMSIA IA +LGVHPNTVRFHLD+LV DGQVE VE  R  PG
Sbjct  31   ESAGRRRAVMRLLRASPEPMSIAGIADELGVHPNTVRFHLDSLVTDGQVEHVELDRKGPG  90

Query  72   RPPLMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWGRQLEA-----P  126
            RPPLMFRAVR+ D  GTR YRLLAEIL    A ERD    AL+AGRAWGR+++A     P
Sbjct  91   RPPLMFRAVRQMDRGGTRHYRLLAEILTMAFATERDPGPKALAAGRAWGRKVDAELHPRP  150

Query  127  PAGADTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGI  186
             A A+ EE I  L+ VLD+LGFAPERR  +G QQVGLRHCPFLELAE ++ VVCPVHLG+
Sbjct  151  DAPANAEEVIARLIEVLDELGFAPERRVVDGEQQVGLRHCPFLELAENRSSVVCPVHLGL  210

Query  187  MRGALQTWGAPVTVDRLDAFVEPDLCLAHFTPLEGAIR  224
            M+GA++TWGAPV+VDRLD+FVEPDLCLAH T L+GA +
Sbjct  211  MQGAVETWGAPVSVDRLDSFVEPDLCLAHLT-LQGAAK  247


>gi|342858553|ref|ZP_08715208.1| hypothetical protein MCOL_06746 [Mycobacterium colombiense CECT 
3035]
 gi|342134257|gb|EGT87437.1| hypothetical protein MCOL_06746 [Mycobacterium colombiense CECT 
3035]
Length=232

 Score =  289 bits (740),  Expect = 2e-76, Method: Compositional matrix adjust.
 Identities = 151/221 (69%), Positives = 173/221 (79%), Gaps = 6/221 (2%)

Query  9    SLQEPVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRG  68
            S+ E  GRRRAV+R L AS  PMSIA IA  LGVHPNTVRFHLD+LVADGQVE VE  R 
Sbjct  13   SIGESAGRRRAVMRLLRASPDPMSIAGIADVLGVHPNTVRFHLDSLVADGQVENVELDRK  72

Query  69   RPGRPPLMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWGRQLEAP--  126
             PGRPPLMFRAVR+ D  G R YRLLAEILA+ LA ERD    AL+AGRAWG++++A   
Sbjct  73   GPGRPPLMFRAVRQMDRGGPRHYRLLAEILATALATERDPGPKALAAGRAWGQKMDAELH  132

Query  127  --PAGAD-TEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVH  183
              P  AD  EE I  L+ VLD+LGFAPERR S+G QQVGLRHCPFLELAE  + VVCPVH
Sbjct  133  PLPKDADGAEEAIARLIDVLDELGFAPERRVSDGEQQVGLRHCPFLELAENSSSVVCPVH  192

Query  184  LGIMRGALQTWGAPVTVDRLDAFVEPDLCLAHFTPLEGAIR  224
            LG+M+GA++TWGAPV+VDRLD FVEPD+CLAH T L+GA +
Sbjct  193  LGLMQGAMETWGAPVSVDRLDPFVEPDMCLAHLT-LQGAAK  232


>gi|118618607|ref|YP_906939.1| transcriptional regulator [Mycobacterium ulcerans Agy99]
 gi|183982095|ref|YP_001850386.1| transcriptional regulator [Mycobacterium marinum M]
 gi|118570717|gb|ABL05468.1| transcriptional regulator [Mycobacterium ulcerans Agy99]
 gi|183175421|gb|ACC40531.1| transcriptional regulator [Mycobacterium marinum M]
Length=223

 Score =  287 bits (735),  Expect = 6e-76, Method: Compositional matrix adjust.
 Identities = 155/223 (70%), Positives = 178/223 (80%), Gaps = 1/223 (0%)

Query  1    MGVSVIIRSLQEPVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQV  60
            MG   I R   EP GRRRAVLR L A   P+SI AIA  LGVHPNTVRFHLD LV DGQV
Sbjct  1    MGEGRIARMGGEPAGRRRAVLRVLRALGHPLSIVAIAEHLGVHPNTVRFHLDGLVDDGQV  60

Query  61   ERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWG  120
            ERV+P R  PGRPPLMFRAV++ D  G R Y+LLAEIL++GLAAE DS   AL+AGRAWG
Sbjct  61   ERVQPSRRGPGRPPLMFRAVQQMDRGGARHYQLLAEILSNGLAAESDSVDKALAAGRAWG  120

Query  121  RQLEAPPAGADTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVC  180
             +L+AP      E++IDHLV VLD LGFAPERR S+G+QQV LRHCPFLELAE ++GVVC
Sbjct  121  ERLQAPTTAHSAEKSIDHLVGVLDGLGFAPERRVSDGQQQVALRHCPFLELAENRSGVVC  180

Query  181  PVHLGIMRGALQTWGAPVTVDRLDAFVEPDLCLAHFTPLEGAI  223
            P+HLG+MRGAL++WGAPVTV+RLD FVEPDLCLAH +P EGA+
Sbjct  181  PIHLGLMRGALESWGAPVTVERLDPFVEPDLCLAHLSP-EGAL  222


>gi|296170896|ref|ZP_06852433.1| regulatory protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894445|gb|EFG74189.1| regulatory protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=226

 Score =  275 bits (702),  Expect = 5e-72, Method: Compositional matrix adjust.
 Identities = 137/192 (72%), Positives = 157/192 (82%), Gaps = 5/192 (2%)

Query  30   PMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLMFRAVRRTDSTGTR  89
            PMSIAAIA  LGVHPNTVRFHLD+LV DGQVE VE  R  PGRPPLMFRAVR+ D  GTR
Sbjct  28   PMSIAAIADVLGVHPNTVRFHLDSLVGDGQVEHVELDRKGPGRPPLMFRAVRQMDRGGTR  87

Query  90   RYRLLAEILASGLAAERDSRAMALSAGRAWGRQ----LEAPPAGADT-EETIDHLVAVLD  144
             YRLLAE+LA+  AAE D+ A A++AGRAWG++    LEA PAG  + EE IDHLV +LD
Sbjct  88   HYRLLAEVLATAFAAEPDAGAKAVAAGRAWGQKLDSSLEAVPAGTTSAEEAIDHLVNMLD  147

Query  145  DLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGAPVTVDRLD  204
            +LGFAPERR ++G QQVGLRHCPFLELAE +  VVCPVHLG+M+GA+  WGAPV+VDRLD
Sbjct  148  ELGFAPERRTADGEQQVGLRHCPFLELAENRTAVVCPVHLGLMQGAMDAWGAPVSVDRLD  207

Query  205  AFVEPDLCLAHF  216
            AFVEPDLC+AH 
Sbjct  208  AFVEPDLCVAHL  219


>gi|41408823|ref|NP_961659.1| hypothetical protein MAP2725c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41397182|gb|AAS05042.1| hypothetical protein MAP_2725c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|336458902|gb|EGO37859.1| putative transcriptional regulator [Mycobacterium avium subsp. 
paratuberculosis S397]
Length=234

 Score =  271 bits (694),  Expect = 4e-71, Method: Compositional matrix adjust.
 Identities = 141/200 (71%), Positives = 156/200 (78%), Gaps = 6/200 (3%)

Query  30   PMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLMFRAVRRTDSTGTR  89
            PMSIA IA  LGVHPNTVRFHLD+LVADGQVE VE  R  PGRPPLMFRAVR+ D  GTR
Sbjct  36   PMSIAGIADVLGVHPNTVRFHLDSLVADGQVEHVELDRKGPGRPPLMFRAVRQMDRGGTR  95

Query  90   RYRLLAEILASGLAAERDSRAMALSAGRAWGRQLEA-----PPAGADTEETIDHLVAVLD  144
             YRLLAEILA   AAE D    AL+AGRAWG+QL+A     P   A  E+ I  LV VLD
Sbjct  96   HYRLLAEILAKAFAAETDPAPKALAAGRAWGQQLDAERRRLPRDAAGAEQAIAQLVDVLD  155

Query  145  DLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGAPVTVDRLD  204
            +LGFAPERR  +G QQVGLRHCPFLELAE  + VVCPVHLG+M+GA++TWGAPV+VDRLD
Sbjct  156  ELGFAPERRVIDGEQQVGLRHCPFLELAENSSNVVCPVHLGLMQGAMETWGAPVSVDRLD  215

Query  205  AFVEPDLCLAHFTPLEGAIR  224
             FVEPDLCLAH T L+GA R
Sbjct  216  PFVEPDLCLAHLT-LQGAGR  234


>gi|118465695|ref|YP_882681.1| hypothetical protein MAV_3499 [Mycobacterium avium 104]
 gi|254775950|ref|ZP_05217466.1| hypothetical protein MaviaA2_14940 [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|118166982|gb|ABK67879.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=234

 Score =  271 bits (692),  Expect = 6e-71, Method: Compositional matrix adjust.
 Identities = 140/200 (70%), Positives = 156/200 (78%), Gaps = 6/200 (3%)

Query  30   PMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLMFRAVRRTDSTGTR  89
            PMSIA IA  LGVHPNTVRFHLD+LVADGQVE VE  R  PGRPPLMFRAVR+ D  GTR
Sbjct  36   PMSIAGIADVLGVHPNTVRFHLDSLVADGQVEHVELDRKGPGRPPLMFRAVRQMDRGGTR  95

Query  90   RYRLLAEILASGLAAERDSRAMALSAGRAWGRQLEA-----PPAGADTEETIDHLVAVLD  144
             YRLLAEILA   AAE D    AL+AGRAWG+QL+A     P   A  E+ I  LV VLD
Sbjct  96   HYRLLAEILAKAFAAETDPAPKALAAGRAWGQQLDAERRRLPRDAAGAEQAIAQLVDVLD  155

Query  145  DLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGAPVTVDRLD  204
            +LGFAPERR  +G QQVGLRHCPFLELAE  + VVCPVHLG+M+GA+++WGAPV+VDRLD
Sbjct  156  ELGFAPERRVIDGEQQVGLRHCPFLELAENSSNVVCPVHLGLMQGAMESWGAPVSVDRLD  215

Query  205  AFVEPDLCLAHFTPLEGAIR  224
             FVEPDLCLAH T L+GA R
Sbjct  216  PFVEPDLCLAHLT-LQGADR  234


>gi|333991045|ref|YP_004523659.1| transcriptional regulator [Mycobacterium sp. JDM601]
 gi|333487013|gb|AEF36405.1| transcriptional regulator [Mycobacterium sp. JDM601]
Length=230

 Score =  236 bits (601),  Expect = 3e-60, Method: Compositional matrix adjust.
 Identities = 119/202 (59%), Positives = 146/202 (73%), Gaps = 5/202 (2%)

Query  24   LCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLMFRAVRRT  83
            + A+  P+SIA IA +LGVHPNTVRFHLD LV +G+VE  EP     GRP LMFRA+R+ 
Sbjct  1    MQAADEPLSIAQIADELGVHPNTVRFHLDTLVEEGRVEHTEPDHKGRGRPALMFRAIRQM  60

Query  84   DSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWG---RQLEAPPAGADTEETIDHLV  140
            D  GTRR+RLLAEIL  GLAA+ D    AL+AGRAWG   R L  P      +E+ D LV
Sbjct  61   DRGGTRRFRLLAEILTIGLAADSDPSGKALAAGRAWGQRLRPLNRPAHRVGADESTDQLV  120

Query  141  AVLDDLGFAPERRASN--GRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGAPV  198
             +LD+LGF PE+   +  G +Q+GLRHCPFLELAET   VVCP+HLG+M+GAL+ W APV
Sbjct  121  DMLDELGFQPEQLEPDDAGEKQLGLRHCPFLELAETSTDVVCPIHLGLMQGALEAWDAPV  180

Query  199  TVDRLDAFVEPDLCLAHFTPLE  220
            TVDRLD+F +PDLC+AH   +E
Sbjct  181  TVDRLDSFAQPDLCVAHLKSME  202


>gi|120406790|ref|YP_956619.1| putative transcriptional regulator [Mycobacterium vanbaalenii 
PYR-1]
 gi|119959608|gb|ABM16613.1| transcriptional regulator [Mycobacterium vanbaalenii PYR-1]
Length=224

 Score =  230 bits (586),  Expect = 1e-58, Method: Compositional matrix adjust.
 Identities = 131/209 (63%), Positives = 154/209 (74%), Gaps = 3/209 (1%)

Query  12   EPVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPG  71
            EP GRRR VLR L A+  PMSI AIA  L +HPNTVRFHLD LV+ GQVER+EP R RPG
Sbjct  8    EPPGRRRDVLRTLKAASGPMSIGAIADALDIHPNTVRFHLDRLVSQGQVERIEPDRRRPG  67

Query  72   RPPLMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWGRQLE--AP-PA  128
            RPP MFRA+ + D  G R YRLLAE+LA  LAA+ D    A + GRAWGR+L   AP   
Sbjct  68   RPPQMFRAMPQMDRAGPRHYRLLAEMLAMSLAADGDPPTRAQAGGRAWGRELNVRAPRRK  127

Query  129  GADTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMR  188
             +  EE +D LV VLDD+GF PER  +  +QQ+GLRHCPFLELAETQ+ VVC +HLG+M+
Sbjct  128  QSGAEEAVDRLVEVLDDVGFVPERLGAGEKQQIGLRHCPFLELAETQSRVVCGIHLGLMQ  187

Query  189  GALQTWGAPVTVDRLDAFVEPDLCLAHFT  217
            G L+  GAPVTVDRL+ F +PDLCLAH T
Sbjct  188  GVLERQGAPVTVDRLEPFAQPDLCLAHLT  216


>gi|119714163|ref|YP_919305.1| transcriptional regulator [Nocardioides sp. JS614]
 gi|119526072|gb|ABL79442.1| transcriptional regulator [Nocardioides sp. JS614]
Length=215

 Score =  214 bits (544),  Expect = 1e-53, Method: Compositional matrix adjust.
 Identities = 110/204 (54%), Positives = 139/204 (69%), Gaps = 4/204 (1%)

Query  16   RRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPL  75
            RR AVL AL +S  PMSI  +A +LG+H NTVRFHL  L   G+VERVEP R  PGRPPL
Sbjct  4    RREAVLDALRSSEAPMSILDLAHQLGLHANTVRFHLQVLADSGRVERVEPTRSSPGRPPL  63

Query  76   MFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWGRQLEA----PPAGAD  131
            MFRA R  D  G R Y+LLA+ LA+ L+A+ +S   A+ AGRAWG +L A      A   
Sbjct  64   MFRAHRGMDPAGPRNYQLLADALATRLSADNESTDKAVEAGRAWGHRLAAGTRSTTAVTT  123

Query  132  TEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGAL  191
             ++  D LV +L +LGF+P+RR+S  R Q+ LRHCPFL+L      V+CPVHLG+M+GA+
Sbjct  124  DDQATDQLVEMLGELGFSPQRRSSGRRAQIALRHCPFLDLVPEHENVICPVHLGLMQGAM  183

Query  192  QTWGAPVTVDRLDAFVEPDLCLAH  215
                A VT++RL+ F EPDLCLAH
Sbjct  184  AAMSAAVTIERLEPFAEPDLCLAH  207


>gi|108802250|ref|YP_642447.1| transcriptional regulator [Mycobacterium sp. MCS]
 gi|119871403|ref|YP_941355.1| transcriptional regulator [Mycobacterium sp. KMS]
 gi|126438232|ref|YP_001073923.1| transcriptional regulator [Mycobacterium sp. JLS]
 gi|108772669|gb|ABG11391.1| transcriptional regulator [Mycobacterium sp. MCS]
 gi|119697492|gb|ABL94565.1| transcriptional regulator [Mycobacterium sp. KMS]
 gi|126238032|gb|ABO01433.1| transcriptional regulator [Mycobacterium sp. JLS]
Length=212

 Score =  202 bits (515),  Expect = 2e-50, Method: Compositional matrix adjust.
 Identities = 107/204 (53%), Positives = 134/204 (66%), Gaps = 1/204 (0%)

Query  16   RRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPL  75
            RR+ VL  L  +   +SIA IAG+L VHPNT RFHL+ L   GQVE VE  R +PGRPPL
Sbjct  4    RRQDVLAVLREAGTALSIAQIAGELAVHPNTARFHLEALAGTGQVEAVEADRAKPGRPPL  63

Query  76   MFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWGRQLEAPPAGADTEET  135
            MFRAV   D  G R YR LA ILA  LA + ++   A++AGR+WG     P       + 
Sbjct  64   MFRAVAGMDPAGPRDYRTLAGILADALARQPNAARRAVTAGRSWGEHTAEPTRTRSRRQA  123

Query  136  IDHLVAVLDDLGFAPERR-ASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTW  194
            +D L  +L  LGFAPE R  + G  ++GLR+CPFL+LA+T+  VVCPVHLG+M+GAL  W
Sbjct  124  VDRLTDLLAGLGFAPEARPTAGGIGEIGLRNCPFLDLADTRRDVVCPVHLGLMQGALSRW  183

Query  195  GAPVTVDRLDAFVEPDLCLAHFTP  218
             AP+TV+ L  F EPDLC+AH  P
Sbjct  184  KAPITVEALIPFAEPDLCVAHLAP  207


>gi|240170647|ref|ZP_04749306.1| transcriptional regulator [Mycobacterium kansasii ATCC 12478]
Length=141

 Score =  197 bits (500),  Expect = 1e-48, Method: Compositional matrix adjust.
 Identities = 92/141 (66%), Positives = 119/141 (85%), Gaps = 1/141 (0%)

Query  84   DSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWGRQLEAPPAGADTEETIDHLVAVL  143
            D  G R YRLLAEIL++GLAAE DS+A AL+AGRAWG++LEAP   ++ E++I+HLV VL
Sbjct  2    DRGGARHYRLLAEILSNGLAAEPDSQAKALAAGRAWGQRLEAPATDSNAEKSIEHLVGVL  61

Query  144  DDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGAPVTVDRL  203
            D LGFAPERR S+G+ Q+GLRHCPFLE+AE+++ +VCP+HLG+M+GAL++W APV V+RL
Sbjct  62   DQLGFAPERRVSDGQHQLGLRHCPFLEVAESRSAIVCPIHLGLMQGALESWAAPVGVERL  121

Query  204  DAFVEPDLCLAHFTPLEGAIR  224
            D F EPDLCLAH + L+GA R
Sbjct  122  DVFAEPDLCLAHLS-LKGAAR  141


>gi|118473036|ref|YP_885519.1| ArsR family transcriptional regulator [Mycobacterium smegmatis 
str. MC2 155]
 gi|118174323|gb|ABK75219.1| regulatory protein, ArsR [Mycobacterium smegmatis str. MC2 155]
Length=217

 Score =  177 bits (448),  Expect = 1e-42, Method: Compositional matrix adjust.
 Identities = 101/208 (49%), Positives = 130/208 (63%), Gaps = 2/208 (0%)

Query  13   PVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGR  72
            P GRR A+L+ L AS  P +IA IA +LGVHPNTVRFHL+ L   G+VE+V       GR
Sbjct  9    PRGRRDAILQVLRASPQPRAIAGIADELGVHPNTVRFHLEALARAGRVEQVVGEAFGRGR  68

Query  73   PPLMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAW--GRQLEAPPAGA  130
            PP+++RA RR D +G   YRLLA IL   +A   D+ A+A   GR+   G    AP   +
Sbjct  69   PPVLYRASRRMDPSGPTNYRLLASILTGYVARHPDAAAVAADLGRSTSPGLVTTAPHGPS  128

Query  131  DTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGA  190
               + +  LV +L +LGF PE       +++ LRHCPF  LAE    V C +HLG+M+GA
Sbjct  129  TRTQAVTELVDLLAELGFEPEPADGRRAREIRLRHCPFQNLAEEHGEVTCALHLGLMQGA  188

Query  191  LQTWGAPVTVDRLDAFVEPDLCLAHFTP  218
            L+   APVTVDRL+ FVEPDLC+AH  P
Sbjct  189  LRDLQAPVTVDRLEPFVEPDLCVAHLAP  216


>gi|331698394|ref|YP_004334633.1| putative transcriptional regulator [Pseudonocardia dioxanivorans 
CB1190]
 gi|326953083|gb|AEA26780.1| putative transcriptional regulator [Pseudonocardia dioxanivorans 
CB1190]
Length=226

 Score =  172 bits (435),  Expect = 5e-41, Method: Compositional matrix adjust.
 Identities = 112/204 (55%), Positives = 133/204 (66%), Gaps = 3/204 (1%)

Query  16   RRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPL  75
            RR  VL AL  +  P+ +A IA +L VHPNTVRFHLD LV  G+ ERV      PGRPPL
Sbjct  9    RRDVVLAALRDAAEPLGVAEIAARLRVHPNTVRFHLDALVDAGRAERVPVAPTGPGRPPL  68

Query  76   MFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWGRQLEAPPAGADTEET  135
            +FRA    D TG R YRLLA  L   LAA  D  A A +AGRAWG +L   P  A   + 
Sbjct  69   LFRARPGMDPTGPRNYRLLAAALVENLAAGPDPAAAAAAAGRAWGARLADGPPAASGPDG  128

Query  136  IDHLVAVLDDLGFAPERRASNGR--QQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQT  193
            +  LV +LD+LGFAP+  A  GR   Q+ LRHCPFLELA T A VVCP+HLG+M+GAL  
Sbjct  129  VRSLVTLLDELGFAPQWPAP-GRPDDQLALRHCPFLELATTDAQVVCPLHLGLMQGALTA  187

Query  194  WGAPVTVDRLDAFVEPDLCLAHFT  217
              APV+V+RL+ F  PDLCLAH +
Sbjct  188  LAAPVSVERLEPFAGPDLCLAHLS  211


>gi|329939761|ref|ZP_08289062.1| transcriptional regulator [Streptomyces griseoaurantiacus M045]
 gi|329301331|gb|EGG45226.1| transcriptional regulator [Streptomyces griseoaurantiacus M045]
Length=223

 Score =  170 bits (430),  Expect = 1e-40, Method: Compositional matrix adjust.
 Identities = 105/210 (50%), Positives = 128/210 (61%), Gaps = 7/210 (3%)

Query  16   RRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPL  75
            RR AVL A+  +  P+ IA +A +LGVHPNTVRFHLD LV  G+VER       PGRP  
Sbjct  13   RRLAVLDAVRDAGAPVGIAEVAERLGVHPNTVRFHLDALVTQGRVERTVEQPSGPGRPRT  72

Query  76   MFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSA---GRAWGRQL--EAPPAGA  130
            +       D +G R YRLLA +L S LA+   +   A  A   GRAWGR L    PP   
Sbjct  73   VHTVRHGMDRSGARHYRLLARMLVSRLASTAPAAEAAAEATEAGRAWGRHLVERFPPGRR  132

Query  131  DT-EETIDHLVAVLDDLGFAPERRA-SNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMR  188
             T   ++  L AVLD+LGFAP  +  ++G   + LRHCPFLELAE   GVVCP+HLG+M+
Sbjct  133  PTVRASVARLTAVLDELGFAPRTQGETDGPAAIRLRHCPFLELAEEYRGVVCPLHLGLMQ  192

Query  189  GALQTWGAPVTVDRLDAFVEPDLCLAHFTP  218
            GAL   GAPV   RL+ F EPD C+AH  P
Sbjct  193  GALAELGAPVEATRLEPFAEPDTCVAHLAP  222


>gi|336118919|ref|YP_004573691.1| hypothetical protein MLP_32740 [Microlunatus phosphovorus NM-1]
 gi|334686703|dbj|BAK36288.1| hypothetical protein MLP_32740 [Microlunatus phosphovorus NM-1]
Length=211

 Score =  164 bits (415),  Expect = 9e-39, Method: Compositional matrix adjust.
 Identities = 103/199 (52%), Positives = 123/199 (62%), Gaps = 4/199 (2%)

Query  20   VLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLMFRA  79
            VL  L  +  P+ IA IA  LGVHPNTVRFHL  L+  GQV RVE     PGRP  +FRA
Sbjct  15   VLAELRTAGRPLRIAEIAEGLGVHPNTVRFHLGGLIQRGQVARVEAPPSGPGRPAQLFRA  74

Query  80   VRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWGRQLEAPPAGADTEETIDHL  139
            V   D  G R YRLLAE+L + LAA   + A A  AGRAWG QL A       EE +  L
Sbjct  75   VPGMDPGGPRHYRLLAEVLLADLAAHPGAAAWAADAGRAWGTQLGA--ERTQPEEPVQRL  132

Query  140  VAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGAPVT  199
            V ++ DLGFAPE+ A +  +Q+ LRHCPFLELA+    VVC VHLG+ +G L  W AP+T
Sbjct  133  VELMADLGFAPEQPADS--EQIALRHCPFLELAQQHPAVVCQVHLGMAQGVLAAWQAPIT  190

Query  200  VDRLDAFVEPDLCLAHFTP  218
             +RL  F EPD C+    P
Sbjct  191  AERLVPFAEPDRCVVQLAP  209


>gi|257057835|ref|YP_003135667.1| putative transcriptional regulator [Saccharomonospora viridis 
DSM 43017]
 gi|256587707|gb|ACU98840.1| predicted transcriptional regulator [Saccharomonospora viridis 
DSM 43017]
Length=227

 Score =  162 bits (410),  Expect = 3e-38, Method: Compositional matrix adjust.
 Identities = 96/208 (47%), Positives = 124/208 (60%), Gaps = 5/208 (2%)

Query  14   VGRRRA-VLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGR  72
            +GR R  VL  L  +  P++   +A ++G H NT RFHLD LV  G  +R   G GRPGR
Sbjct  15   LGRSRTRVLELLRTTDGPLTAHQVAQRVGFHVNTARFHLDALVEAGLAQRGTEGAGRPGR  74

Query  73   PPLMFRAVRRTDSTGTRRYRLLAEILASGLA-AERDSRAMALSAGRAWGRQLEAPPA---  128
            P +++RAV    S G R YRLLA +L++ +     + R  A++AGR WGR L   PA   
Sbjct  75   PRMVYRAVAHRASEGPRSYRLLATMLSTLIDRVMPEPREAAIAAGREWGRYLAKRPAPFE  134

Query  129  GADTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMR  188
              D EE I  +  VL + GFAP   +  G + + LRHCPF E+A     VVC +HLG+M+
Sbjct  135  HVDAEEGIRRVANVLAEAGFAPGEVSGAGPRVLPLRHCPFQEVARVHGDVVCSLHLGLMQ  194

Query  189  GALQTWGAPVTVDRLDAFVEPDLCLAHF  216
            G L   GAPVT  RL+ FVEP LCLAHF
Sbjct  195  GVLAEVGAPVTARRLEPFVEPSLCLAHF  222


>gi|111025043|ref|YP_707463.1| MarR family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110824022|gb|ABG99305.1| possible transcriptional regulator, MarR family protein [Rhodococcus 
jostii RHA1]
Length=227

 Score =  160 bits (405),  Expect = 1e-37, Method: Compositional matrix adjust.
 Identities = 97/207 (47%), Positives = 122/207 (59%), Gaps = 6/207 (2%)

Query  17   RRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLM  76
            R  VL  LCA+  PM +  IA ++ +HPNT RFHLD LV  G  ER      RPGRP ++
Sbjct  19   RNRVLDLLCAAAEPMGVQDIADRVDLHPNTARFHLDGLVDAGLAERRAEDSRRPGRPRMV  78

Query  77   FRAVRRTDSTGTRRYRLLAEILASGLAAER--DSRAMALSAGRAWGRQLEAPPAGA---D  131
            + A     STG R YRLLAE+L +GL A+   +    A +AG AWGR L   PA +   D
Sbjct  79   YAATPSDASTGQRSYRLLAEML-TGLIADTLPEPGRAAETAGEAWGRYLAERPAPSQRVD  137

Query  132  TEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGAL  191
              + +  L  VL + GFAP    +  R  + LRHCPF E+AE    VVC +HLG++RGAL
Sbjct  138  AADGVRRLSTVLAESGFAPGVVENLDRPVIPLRHCPFREVAERHRDVVCSLHLGLIRGAL  197

Query  192  QTWGAPVTVDRLDAFVEPDLCLAHFTP  218
                AP+  DRL+ FVEP LCLAH  P
Sbjct  198  AEVRAPLAADRLEPFVEPSLCLAHLIP  224


>gi|119716337|ref|YP_923302.1| transcriptional regulator [Nocardioides sp. JS614]
 gi|119536998|gb|ABL81615.1| transcriptional regulator, ArsR family [Nocardioides sp. JS614]
Length=225

 Score =  157 bits (397),  Expect = 1e-36, Method: Compositional matrix adjust.
 Identities = 87/206 (43%), Positives = 118/206 (58%), Gaps = 5/206 (2%)

Query  16   RRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPL  75
            RR  VL  L  +  P+S+A +A  +G+H NT RFHLD LV DG  ER    R  PGRP +
Sbjct  18   RRTEVLSMLRQADQPLSVAEVAEAMGLHVNTARFHLDGLVEDGLAERTTEPRETPGRPRI  77

Query  76   MFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWGRQL---EAPPAGADT  132
            ++ +     S G R Y LLAE+L   +++ +D+ +  +  G+AWGR L    AP    DT
Sbjct  78   LYAS--DGPSLGPRSYELLAEMLTGFVSSLQDTGSGTVELGKAWGRHLIERSAPSERVDT  135

Query  133  EETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQ  192
             E +  L  +LD +GF PE   ++   +V L  CPF E+AE    VVC +HLG+M+GAL+
Sbjct  136  SEAVVRLDRMLDAIGFQPESETTDAGAEVRLHRCPFREVAEKHTDVVCAIHLGLMQGALE  195

Query  193  TWGAPVTVDRLDAFVEPDLCLAHFTP  218
               APVT   L  FV P LC+A   P
Sbjct  196  EIDAPVTATSLQPFVTPHLCVARLEP  221


>gi|337763346|emb|CCB72054.1| Transcriptional regulator [Streptomyces cattleya NRRL 8057]
Length=220

 Score =  152 bits (384),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 104/213 (49%), Positives = 122/213 (58%), Gaps = 7/213 (3%)

Query  16   RRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVER-VEPGRGRPGRPP  74
            RR AVL AL A+  P+ +A ++ +LGVH NTVRFHLD LVADG VE  VEP  GR GRP 
Sbjct  9    RRHAVLDALRAAPGPLGVAELSDRLGVHANTVRFHLDALVADGAVESTVEPPAGR-GRPR  67

Query  75   LMFRAVRRTDSTGTRRYRLLAEILASGLAAE-RDSRAMALSAGRAWGRQL---EAPPAGA  130
             ++      D  G R Y+LLA IL   LAA   ++   A  AG  WGR L    AP    
Sbjct  68   TVYAPRPGMDRGGERGYQLLARILLGHLAAAGPEAHDDARRAGHTWGRFLVDRTAPHHRP  127

Query  131  DTEETIDHLVAVLDDLGFAPE-RRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRG  189
               E    L  +L  LGF PE   A+   + + LRHCPFLELAE  A +VC VHLG+MRG
Sbjct  128  TAAEATARLSTLLAGLGFQPEPSDATPAPEAIRLRHCPFLELAEESATLVCSVHLGLMRG  187

Query  190  ALQTWGAPVTVDRLDAFVEPDLCLAHFTPLEGA  222
            AL    APV V RL+ F  PD CLA   P   A
Sbjct  188  ALAELDAPVRVARLEPFATPDTCLARLEPAAAA  220


>gi|226359477|ref|YP_002777254.1| SufR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226237961|dbj|BAH48309.1| putative SufR family transcriptional regulator [Rhodococcus opacus 
B4]
Length=230

 Score =  152 bits (384),  Expect = 4e-35, Method: Compositional matrix adjust.
 Identities = 96/207 (47%), Positives = 121/207 (59%), Gaps = 6/207 (2%)

Query  17   RRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLM  76
            R  VL  LC +  PM +  IA ++ +HPNT RFHLD LV  G  ER    R RPGRP ++
Sbjct  19   RNRVLELLCVAAEPMGVQDIAERVDLHPNTARFHLDGLVDTGLAERRAEDRRRPGRPRMV  78

Query  77   FRAVRRTDSTGTRRYRLLAEILASGLAAER--DSRAMALSAGRAWGRQLEAPPAGA---D  131
            + A     STG R YRLLAE+L +GL  +   +    A +AG AWGR L   PA +   D
Sbjct  79   YAATTSDASTGRRSYRLLAEML-TGLIGDTLPEPGQAAETAGEAWGRYLAERPAPSQRVD  137

Query  132  TEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGAL  191
              + +  L  VL + GFAP       R  + LRHCPF E+AE    VVC +HLG++RGAL
Sbjct  138  AADGVRRLSTVLAESGFAPGVVDDLTRPVIPLRHCPFREVAERHRDVVCSLHLGLIRGAL  197

Query  192  QTWGAPVTVDRLDAFVEPDLCLAHFTP  218
                AP+  DRL+ FVEP LCLA+ TP
Sbjct  198  AEVRAPLAADRLEPFVEPSLCLAYLTP  224


>gi|117927709|ref|YP_872260.1| transcriptional regulator [Acidothermus cellulolyticus 11B]
 gi|117648172|gb|ABK52274.1| transcriptional regulator [Acidothermus cellulolyticus 11B]
Length=255

 Score =  140 bits (353),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 86/203 (43%), Positives = 112/203 (56%), Gaps = 5/203 (2%)

Query  15   GRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPP  74
             RR A+L  L A+  P+SI  IA   GVH NT RFHLD LV +G V R    R  PGRP 
Sbjct  16   ARRAAILDHLRAADRPLSITEIAEATGVHANTARFHLDRLVDEGLVSRSAEPRDTPGRPR  75

Query  75   LMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWGRQLEAPPAGAD---  131
            +++ A       G R Y LLAE+L   +A+   S   A   GR WG+ L   PA ++   
Sbjct  76   ILYAAT--ATDPGPRSYALLAEMLTGLVASIEKSTDGARKTGRQWGQHLVERPAPSEQIS  133

Query  132  TEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGAL  191
            T+E +  + AVLD +GF PE R  +G  +  LRHCPF E+A     +VC +H G++ GA+
Sbjct  134  TDEAVRRVNAVLDAIGFRPEMRKLDGETEFLLRHCPFREVALRHTDIVCALHRGLIEGAV  193

Query  192  QTWGAPVTVDRLDAFVEPDLCLA  214
                AP+ V  L  FV P LC A
Sbjct  194  GELHAPLEVMDLRPFVTPTLCTA  216


>gi|119718524|ref|YP_925489.1| transcriptional regulator [Nocardioides sp. JS614]
 gi|119539185|gb|ABL83802.1| transcriptional regulator [Nocardioides sp. JS614]
Length=261

 Score =  139 bits (350),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 88/204 (44%), Positives = 112/204 (55%), Gaps = 4/204 (1%)

Query  17   RRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLM  76
            R  VL  L  +  PM+ +A+  +LG+H N+ RFHLD L  D  V R    R  PGRP ++
Sbjct  52   RARVLALLQDAGEPMTASAVGARLGLHVNSARFHLDALAEDALVVREREDRSTPGRPKVL  111

Query  77   FRAVRRTDSTGTRRYRLLAEILASGLAAE-RDSRAMALSAGRAWGRQLE--APPAG-ADT  132
            +   +   +   R YRLLAEIL S LA    +  A A  AG AWGR L   APP   AD 
Sbjct  112  YTVAQAAPAVTHRSYRLLAEILTSILAGRLPEPSAAAEEAGVAWGRYLAPAAPPYQRADR  171

Query  133  EETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQ  192
             E++  LV  LD +GF        G  ++ + HCPFLE+AE    VVC VHLG+MRG L+
Sbjct  172  SESLVRLVDTLDRIGFDSHVVDEPGDLRLEVSHCPFLEVAEQHHDVVCAVHLGLMRGILE  231

Query  193  TWGAPVTVDRLDAFVEPDLCLAHF  216
              GA V    L+  VEP  C+AH 
Sbjct  232  QTGATVRATGLEPLVEPSRCIAHL  255


>gi|331697010|ref|YP_004333249.1| putative transcriptional regulator [Pseudonocardia dioxanivorans 
CB1190]
 gi|326951699|gb|AEA25396.1| putative transcriptional regulator [Pseudonocardia dioxanivorans 
CB1190]
Length=221

 Score =  137 bits (346),  Expect = 8e-31, Method: Compositional matrix adjust.
 Identities = 95/216 (44%), Positives = 119/216 (56%), Gaps = 14/216 (6%)

Query  16   RRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPL  75
            RR  +L  +  +  P+ +  +A   G+HPNT RFHLD LVADG ++         GRP  
Sbjct  4    RREQILEIVQQALEPVEVGEVARAAGIHPNTARFHLDALVADGVLDCATGAPAGRGRPRH  63

Query  76   MFRAVRRTDSTGT-RRYRLLAEILASGLAAE-RDSRAMALSAGRAWGRQLEAPPAGADT-  132
             +RA R   + GT RRY+LLAEIL S L     D+   A +AGRAWG  L   PA A   
Sbjct  64   TYRA-RPGQARGTARRYQLLAEILLSHLELRGEDAADEATTAGRAWGAYLAPRPAPARAV  122

Query  133  --EETIDHLVAVLDDLGFAPER--------RASNGRQQVGLRHCPFLELAETQAGVVCPV  182
              +  +  L+ +L DL FAPE          A++    V LRHCPFLELA  Q  +VC V
Sbjct  123  RPDAALTQLLTMLGDLDFAPEPVHTRPDGVDAADWPDVVRLRHCPFLELAVPQRDLVCRV  182

Query  183  HLGIMRGALQTWGAPVTVDRLDAFVEPDLCLAHFTP  218
            HLG+M+GAL    APV+V  L  F EP  CLAH  P
Sbjct  183  HLGLMQGALAELKAPVSVTSLVPFEEPGACLAHLAP  218


>gi|296271191|ref|YP_003653823.1| putative transcriptional regulator [Thermobispora bispora DSM 
43833]
 gi|296093978|gb|ADG89930.1| putative transcriptional regulator [Thermobispora bispora DSM 
43833]
Length=222

 Score =  131 bits (330),  Expect = 6e-29, Method: Compositional matrix adjust.
 Identities = 87/202 (44%), Positives = 107/202 (53%), Gaps = 12/202 (5%)

Query  17   RRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLM  76
            R AVL  L  +  P++I+ IA  +G+HPNTVR HL  L+  G V      R RPGRP  +
Sbjct  7    RVAVLETLRRAGRPLAISEIADAVGLHPNTVRAHLALLIEHGHVAGTREDRDRPGRPRTL  66

Query  77   FRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWG-----RQLEAPPAGAD  131
            + AVR  + +  R YRLLAEIL   L    D    A+ AGR +      R L   PAG  
Sbjct  67   YTAVRTQEDSDARGYRLLAEILLGYLEHHGDGAGAAVDAGRRYATRALPRDL---PAGGS  123

Query  132  TEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGAL  191
               T+D +VA+LD  GF P   A      V L HCPF ELA+     VC VHLG+++GAL
Sbjct  124  V--TVDAIVALLDRAGFEPAVSADG--ATVELHHCPFRELAQADPETVCAVHLGLLQGAL  179

Query  192  QTWGAPVTVDRLDAFVEPDLCL  213
               GAP    RL  F  P  CL
Sbjct  180  TELGAPAEGVRLTPFARPGQCL  201


>gi|326384562|ref|ZP_08206241.1| transcriptional regulator [Gordonia neofelifaecis NRRL B-59395]
 gi|326196696|gb|EGD53891.1| transcriptional regulator [Gordonia neofelifaecis NRRL B-59395]
Length=197

 Score =  130 bits (327),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 83/201 (42%), Positives = 108/201 (54%), Gaps = 9/201 (4%)

Query  17   RRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLM  76
            R AVL AL  +  P+++A +A   G+ P TVRFHL  LV DG V         PGRP L+
Sbjct  2    RDAVLTALHEADAPVTVADLAMTTGIAPTTVRFHLRALVDDGLVVTETARHDGPGRPRLL  61

Query  77   FRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWGRQLEAPPAGADTEETI  136
            +++    D +G R Y LLA +    L     +   A +AGR+WG +     A     + +
Sbjct  62   YQSRPAMDPSGPRNYELLAGVAIQALTELPRAVEHATAAGRSWGARRAHGSA-----DPV  116

Query  137  DHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGA  196
            D L++VLDD GFAPE      R    L  CPFLELA+   GV C +H GIM+G L   G 
Sbjct  117  DDLMSVLDDFGFAPEPVDDGIR----LNRCPFLELAKDHPGVTCSIHRGIMQGVLDAHGL  172

Query  197  PVTVDRLDAFVEPDLCLAHFT  217
              +  RLDAFV+ D CLA  T
Sbjct  173  DASRVRLDAFVDGDHCLASIT  193


>gi|72163192|ref|YP_290849.1| transcriptional regulator [Thermobifida fusca YX]
 gi|71916924|gb|AAZ56826.1| transcriptional regulator [Thermobifida fusca YX]
Length=224

 Score =  126 bits (317),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 88/207 (43%), Positives = 114/207 (56%), Gaps = 11/207 (5%)

Query  17   RRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLM  76
            R AV  AL  +  P+++  +A ++G+H NTVR HL  L   G V      R +PGRP L+
Sbjct  19   RVAVWEALRRAPGPLTVQDLAQRVGLHANTVRGHLAILAERGYVTSAPEERDQPGRPRLL  78

Query  77   FRAVRRTDSTGT-RRYRLLAEILASGLAAERDSRAMALSA-GRAWGRQL-EAPPAG--AD  131
            + AV  TD T   R YRLLAE+L   LA      A A    GR++GR++  AP AG   D
Sbjct  79   YSAV--TDETAALRNYRLLAEMLVDYLAETAADHAAAAIDAGRSYGRRMVHAPQAGERVD  136

Query  132  TEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGAL  191
             +  I  +  +LD  GF P R A+     + L  CPF ELAE+   +VC +HLG+MRG L
Sbjct  137  ADTAIRAVATLLDQAGFRPRRSAAG----IDLHRCPFRELAESAPDIVCGIHLGMMRGVL  192

Query  192  QTWGAPVTVDRLDAFVEPDLCLAHFTP  218
               GAPV   RL  F EPD C+A   P
Sbjct  193  AELGAPVEAVRLRPFAEPDRCVAELRP  219


>gi|145595458|ref|YP_001159755.1| hypothetical protein Strop_2939 [Salinispora tropica CNB-440]
 gi|145304795|gb|ABP55377.1| transcriptional regulator [Salinispora tropica CNB-440]
Length=238

 Score =  117 bits (293),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 75/211 (36%), Positives = 114/211 (55%), Gaps = 6/211 (2%)

Query  17   RRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLM  76
            R ++L    A+   ++IA I+ + G+HP+T R HLD LV  G + +     G+PGRP   
Sbjct  29   RASILELTRAADGGLTIAEISARTGLHPSTARSHLDRLVNAGLLVKARSSGGQPGRPAWR  88

Query  77   FRAVRRTDSTGTRRYRLLAEILASGLAAER--DSRAMALSAGRAWGRQLEAPPAGADTEE  134
            +R V   ++     YR L   L   LA +   D+RA A+ AG  WGR L A  A    ++
Sbjct  89   YRTVPE-EAPAPAPYRALTAALLDHLARQSRGDARAEAVRAGHNWGRHLAA--ATPRGKK  145

Query  135  TIDHLVAVLDDLGFAPE-RRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQT  193
             +D  +AVL  LGF P+ ++ ++G  ++ L  CPFLEL       +C +H+G++RGAL+ 
Sbjct  146  PVDTAMAVLRGLGFDPDLKQTADGHTEIHLYTCPFLELVSQNPDAICGLHVGVVRGALEQ  205

Query  194  WGAPVTVDRLDAFVEPDLCLAHFTPLEGAIR  224
             GAP +   L+ F  P  C+   +   GA R
Sbjct  206  AGAPASDAVLEPFGAPTACVVRLSLPSGATR  236


>gi|226359496|ref|YP_002777273.1| SufR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226237980|dbj|BAH48328.1| putative SufR family transcriptional regulator [Rhodococcus opacus 
B4]
Length=229

 Score =  115 bits (289),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 82/209 (40%), Positives = 110/209 (53%), Gaps = 12/209 (5%)

Query  16   RRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQV----ERVEPGRGRPG  71
            RR  +L AL AS  PM+I  +A    +H  TVRFHLD L + G V    ER  P RGRP 
Sbjct  22   RRVQLLDALRASPTPMAIGELAALCELHVTTVRFHLDALTSAGLVSAEPER-NPARGRPR  80

Query  72   RPPLMFRAVRRTD-STGTRRYRLLAEILASGLAA-ERDSRAMALSAGRAWGRQ--LEAPP  127
            R   ++RA+   +       Y+ LA +LA+  A+ E D  A A +AGRAW R    E P 
Sbjct  81   R---LYRALAPLEPGHADSGYQRLARVLAAHWASSEDDPVARAEAAGRAWARDDLTETPG  137

Query  128  AGADTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIM  187
            +    E+    L  +  ++GF PE  AS    ++ L  CPF  +A     VVC +HLG+M
Sbjct  138  SPRSIEDAASTLTTLFAEMGFDPELEASEDEMRIRLHACPFESVARQSPNVVCALHLGLM  197

Query  188  RGALQTWGAPVTVDRLDAFVEPDLCLAHF  216
            RG L   GAP + +RL  +  P  C+AH 
Sbjct  198  RGVLDRLGAPESDNRLIPWETPRTCVAHL  226


>gi|317125120|ref|YP_004099232.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315589208|gb|ADU48505.1| putative transcriptional regulator [Intrasporangium calvum DSM 
43043]
Length=237

 Score =  111 bits (277),  Expect = 9e-23, Method: Compositional matrix adjust.
 Identities = 86/210 (41%), Positives = 105/210 (50%), Gaps = 18/210 (8%)

Query  17   RRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLM  76
            R  VL AL     P + A +AG+LG HPNT RFHL+ L   G V R    R  PGRP   
Sbjct  19   RARVLAALRELGGPATAAELAGRLGTHPNTARFHLEALCVAGVVSREREDRTVPGRPRTH  78

Query  77   FRAVRRTDSTGTRR-YRLLAEILASGLAAER-DSRAMALSAGRAWGRQLEAPPAGADTEE  134
            +  V      G+RR YRLLAEILA+ L     D    A  AGRA+GR      AGA    
Sbjct  79   Y--VAGPAPGGSRRSYRLLAEILAAQLGTSAPDPGGTAARAGRAFGRA-----AGAGRRH  131

Query  135  TIDHLVA------VLDDLGFA--PERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGI  186
                L A       L  +GF   P R   + R ++ +  CPFLE+A     VVC VH G+
Sbjct  132  VGSDLAAAGLVVDTLSGMGFTSLPSREDPD-RIRIDVTSCPFLEVATQHLDVVCAVHRGL  190

Query  187  MRGALQTWGAPVTVDRLDAFVEPDLCLAHF  216
            M G L+  GAP+ V  L+  V P  C+AH 
Sbjct  191  MEGLLEATGAPLRVASLEPLVRPTHCVAHL  220


>gi|54022958|ref|YP_117200.1| hypothetical protein nfa9910 [Nocardia farcinica IFM 10152]
 gi|54014466|dbj|BAD55836.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=254

 Score =  110 bits (275),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 84/207 (41%), Positives = 115/207 (56%), Gaps = 13/207 (6%)

Query  17   RRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERV-EPGRGRPGRPPL  75
            RR +L  L  +  P+    +A   G H  TVRFHLD L  +  V +  +P RGR GRP +
Sbjct  7    RRRLLAILRGASEPLDAQELARITGQHVTTVRFHLDVLTKESLVRQFQQPPRGR-GRPRI  65

Query  76   MFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRA-MALSAGRAWGRQLEAPPAGADTEE  134
             +RAV+RT       Y+ LA++LA  L  +  SR+  A++AGRAWG +L+A     +T  
Sbjct  66   GYRAVQRTLG-----YQELAQVLAEQLGPDSRSRSEAAVAAGRAWGAKLDAEERRIETLA  120

Query  135  TIDHL-VAVLDDLGFAPERRASNGRQ-QVGLRH--CPFLELAETQAGVVCPVHLGIMRGA  190
             +  + V +L +LGFAPER  S     QV +R   CP  +LA T   VVC VHLG++   
Sbjct  121  DVREVTVGLLSELGFAPERDPSGEESDQVVIRMTGCPLRDLARTHTDVVCGVHLGLIEEV  180

Query  191  LQTWGAPVTVD-RLDAFVEPDLCLAHF  216
            L   G    V+ RL  FVEP+LC+A  
Sbjct  181  LDRSGERGAVNVRLHPFVEPELCVARL  207


>gi|328757873|gb|EGF71489.1| transcriptional regulator, ArsR family [Propionibacterium acnes 
HL020PA1]
Length=193

 Score =  109 bits (272),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 68/168 (41%), Positives = 89/168 (53%), Gaps = 22/168 (13%)

Query  34   AAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRL  93
            A +A  LG+HP+T RFHLD+LV  G+VE     R   GRP  +F  V      G R YRL
Sbjct  37   AELASDLGIHPSTARFHLDHLVEQGRVEATRRHRATRGRPHTVFTLV---SDEGPRAYRL  93

Query  94   LAEILASGLAAERDSRAMALSAGRAWGRQLEAPPAGADTEETIDHLVAVLDDLGFAPERR  153
            LA++L   +A   +  AMA+  G+ WGR                 L+AVLDD+GF+P   
Sbjct  94   LAQMLVDEVAISNNPTAMAMRIGQRWGRHRRGD------------LIAVLDDMGFSPA--  139

Query  154  ASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGAPVTVD  201
            A  G   + LRHCPFL+LA     VVC +H G++ G     G   T+D
Sbjct  140  AEEG--GIVLRHCPFLDLARDHPQVVCSLHCGVVEGVT---GQAATID  182


>gi|50841582|ref|YP_054809.1| putative regulatory protein [Propionibacterium acnes KPA171202]
 gi|289424448|ref|ZP_06426231.1| transcriptional regulator, ArsR family [Propionibacterium acnes 
SK187]
 gi|289427546|ref|ZP_06429259.1| transcriptional regulator, ArsR family [Propionibacterium acnes 
J165]
 34 more sequence titles
 Length=193

 Score =  108 bits (269),  Expect = 7e-22, Method: Compositional matrix adjust.
 Identities = 68/168 (41%), Positives = 88/168 (53%), Gaps = 22/168 (13%)

Query  34   AAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRL  93
            A +A  LG+HP+T RFHLD LV  G+VE     R   GRP  +F  V      G R YRL
Sbjct  37   AELASDLGIHPSTARFHLDRLVEQGRVEATRRHRATRGRPHTVFTLV---SDEGPRAYRL  93

Query  94   LAEILASGLAAERDSRAMALSAGRAWGRQLEAPPAGADTEETIDHLVAVLDDLGFAPERR  153
            LA++L   +A   +  AMA+  G+ WGR                 L+AVLDD+GF+P   
Sbjct  94   LAQMLVDEVAISNNPTAMAMRIGQRWGRHRRGD------------LIAVLDDMGFSPA--  139

Query  154  ASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGAPVTVD  201
            A  G   + LRHCPFL+LA     VVC +H G++ G     G   T+D
Sbjct  140  AEEG--GIVLRHCPFLDLARDHPQVVCSLHCGVVEGVT---GQAATID  182


>gi|145224071|ref|YP_001134749.1| putative transcriptional regulator [Mycobacterium gilvum PYR-GCK]
 gi|315444408|ref|YP_004077287.1| transcriptional regulator [Mycobacterium sp. Spyr1]
 gi|145216557|gb|ABP45961.1| transcriptional regulator [Mycobacterium gilvum PYR-GCK]
 gi|315262711|gb|ADT99452.1| predicted transcriptional regulator [Mycobacterium sp. Spyr1]
Length=233

 Score =  107 bits (266),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 78/209 (38%), Positives = 103/209 (50%), Gaps = 20/209 (9%)

Query  13   PVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGR  72
            P+ R+R  +     +  P+ I A+A  L +HPNTVR HLD L   G  ERV     + GR
Sbjct  21   PLSRQRLCVLDYVRTHAPVRITAVAAALDLHPNTVREHLDALTGHGLAERVTETPSKRGR  80

Query  73   PPLMFRAVRRTDSTGTRRYRLLAEILASGLA-----AERDSRAMALSAGRAWGRQLEAPP  127
            P  ++R      +   + Y  LA  LA  +A      ERD+RA    AG +WG +L    
Sbjct  81   PAALYRPSAADPAIPAQDYAGLATALAGHIARTSTQPERDARA----AGASWGHEL----  132

Query  128  AGADTEETID---HLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHL  184
               DT  T D    ++ VL  LGF P+    +G   + LR CP LE A     +VC VHL
Sbjct  133  -CDDTVTTDDPRAAVLTVLARLGFGPDADGPDG--SIALRSCPLLEAARRYPAIVCQVHL  189

Query  185  GIMRGALQTWGAPV-TVDRLDAFVEPDLC  212
            GI+ G L+ +GA   T   L AF EP  C
Sbjct  190  GIVEGVLERFGAVTDTAPELVAFAEPGAC  218


>gi|111025065|ref|YP_707485.1| ArsR family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110824044|gb|ABG99327.1| possible transcriptional regulator, ArsR family protein [Rhodococcus 
jostii RHA1]
Length=229

 Score =  105 bits (263),  Expect = 4e-21, Method: Compositional matrix adjust.
 Identities = 76/208 (37%), Positives = 104/208 (50%), Gaps = 10/208 (4%)

Query  16   RRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVE---RVEPGRGRPGR  72
            RR  +L AL AS  PM++  +A    +H  TVRFHLD L   G V       P RGRP R
Sbjct  22   RRVQLLDALRASPTPMTVGELAALCELHVTTVRFHLDALTGAGLVSAEPERNPARGRPRR  81

Query  73   PPLMFRAVRRTD-STGTRRYRLLAEILASGLAA-ERDSRAMALSAGRAWGRQLEAPPAGA  130
               ++RA+   +       Y+ LA +LA+  A+ E D    A +AGRAW        +GA
Sbjct  82   ---LYRALAPLEPGHADSGYQGLARVLAAHWASSEDDPVGRAEAAGRAWALDDLTGTSGA  138

Query  131  --DTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMR  188
                E+    L  +  ++GF PE  +     ++ L  CPF  +A     VVC +HLG+MR
Sbjct  139  PRSIEDAASTLTTLFAEMGFDPELESEPEEMRIRLHACPFESVARQSPNVVCALHLGLMR  198

Query  189  GALQTWGAPVTVDRLDAFVEPDLCLAHF  216
            G L   GAP T +RL  +  P  C+AH 
Sbjct  199  GVLDRLGAPETDNRLIPWETPRTCIAHL  226


>gi|119718200|ref|YP_925165.1| transcriptional regulator [Nocardioides sp. JS614]
 gi|119538861|gb|ABL83478.1| transcriptional regulator [Nocardioides sp. JS614]
Length=231

 Score =  105 bits (263),  Expect = 4e-21, Method: Compositional matrix adjust.
 Identities = 86/207 (42%), Positives = 107/207 (52%), Gaps = 11/207 (5%)

Query  17   RRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERV--EPGRGRPGRPP  74
            R AVL+ L        +AA+A   G+HPNTVR HL+ LVADG V RV  EP +GR GRP 
Sbjct  28   RAAVLQLLLDQPEAPRLAALAQASGLHPNTVREHLEALVADGWVRRVRSEP-QGR-GRPA  85

Query  75   LMFRAVRRTDSTGTRRYRLLAEILASGLAAERDS-RAMALSAGRAWGRQLEAPPA--GAD  131
              +++V   +  G   Y  LA  LA+ +A+   +    A  AG  WGR L A        
Sbjct  86   WRYQSV---EERGRDEYAGLATALAASIASTSPAPTETARFAGEHWGRDLAAERDRRPET  142

Query  132  TEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGAL  191
             E+  D +V +LD+LGF PE  A      V L  CP LE A    GVVC VH G++ GAL
Sbjct  143  PEDARDEVVTMLDELGFEPEADAERD-DVVRLTRCPLLEAAHRYPGVVCEVHRGLVSGAL  201

Query  192  QTWGAPVTVDRLDAFVEPDLCLAHFTP  218
             T+GA      L  F EP  CL    P
Sbjct  202  ATYGADPEGTDLIPFAEPGACLLMVPP  228


>gi|295129622|ref|YP_003580285.1| transcriptional regulator, ArsR family [Propionibacterium acnes 
SK137]
 gi|291376879|gb|ADE00734.1| transcriptional regulator, ArsR family [Propionibacterium acnes 
SK137]
 gi|313764919|gb|EFS36283.1| transcriptional regulator, ArsR family [Propionibacterium acnes 
HL013PA1]
 30 more sequence titles
 Length=193

 Score =  105 bits (261),  Expect = 6e-21, Method: Compositional matrix adjust.
 Identities = 67/168 (40%), Positives = 87/168 (52%), Gaps = 22/168 (13%)

Query  34   AAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRL  93
            A +A  LG+HP+T RFHLD LV   +VE     R   GRP  +F  V      G R YRL
Sbjct  37   AELASDLGIHPSTARFHLDRLVEQRRVEATRRHRATRGRPHTVFTLV---SDEGPRAYRL  93

Query  94   LAEILASGLAAERDSRAMALSAGRAWGRQLEAPPAGADTEETIDHLVAVLDDLGFAPERR  153
            LA++L   +A   +  AMA+  G+ WGR                 L+AVLDD+GF+P   
Sbjct  94   LAQMLVDEVAISNNPTAMAMRIGQRWGRHRRGD------------LIAVLDDMGFSPA--  139

Query  154  ASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGAPVTVD  201
            A  G   + LRHCPFL+LA     VVC +H G++ G     G   T+D
Sbjct  140  AEEG--GIVLRHCPFLDLARDHPQVVCSLHCGVVEGVT---GQAATID  182


>gi|282853138|ref|ZP_06262475.1| transcriptional regulator, ArsR family [Propionibacterium acnes 
J139]
 gi|282582591|gb|EFB87971.1| transcriptional regulator, ArsR family [Propionibacterium acnes 
J139]
 gi|314922595|gb|EFS86426.1| transcriptional regulator, ArsR family [Propionibacterium acnes 
HL001PA1]
 6 more sequence titles
 Length=193

 Score =  105 bits (261),  Expect = 7e-21, Method: Compositional matrix adjust.
 Identities = 67/168 (40%), Positives = 88/168 (53%), Gaps = 22/168 (13%)

Query  34   AAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRL  93
            A +A  LG+HP+T RFHLD LV  G+V+     R   GRP  +F  V      G R YRL
Sbjct  37   AELASDLGIHPSTARFHLDRLVEQGRVKVARRHRATRGRPHTVFTLV---SDEGPRAYRL  93

Query  94   LAEILASGLAAERDSRAMALSAGRAWGRQLEAPPAGADTEETIDHLVAVLDDLGFAPERR  153
            LA++L   +A   +  AMA+  G+ WGR                 L+AVLDD+GF+P   
Sbjct  94   LAQMLVDEVALSDNPTAMAIRIGQRWGRHRRGD------------LIAVLDDMGFSPA--  139

Query  154  ASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGAPVTVD  201
            A  G   + LRHCPFL+LA     VVC +H G++ G     G   T+D
Sbjct  140  AEEG--GIVLRHCPFLDLARDHPQVVCSLHCGVVEGVT---GQAATID  182


>gi|159038691|ref|YP_001537944.1| transcriptional regulator TrmB [Salinispora arenicola CNS-205]
 gi|157917526|gb|ABV98953.1| transcriptional regulator, TrmB [Salinispora arenicola CNS-205]
Length=233

 Score =  105 bits (261),  Expect = 7e-21, Method: Compositional matrix adjust.
 Identities = 74/205 (37%), Positives = 104/205 (51%), Gaps = 8/205 (3%)

Query  17   RRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLM  76
            R ++L    A+   ++IA ++ + G+HP+T R HLD LV  G + +     G+PGRP   
Sbjct  23   RASILELTRAAAGGLTIAEVSARTGLHPSTARSHLDRLVDAGLLVKARASGGQPGRPAWR  82

Query  77   FRAVRRTDSTGTRRYRLLAEILASGLAAER-DSRAMALSAGRAWGRQLEA--PPAGADTE  133
            +R V            L A +L       R D RA A  AG  WGR L A  PP G    
Sbjct  83   YRPVPEEAPAPAPYRALAAALLEHLARQGRGDVRAEAARAGHDWGRHLAAATPPGG----  138

Query  134  ETIDHLVAVLDDLGFAPE-RRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQ  192
            + +D  VAVL  LGF PE R  ++G  ++ L  CPFLEL       +C +H+G++RGAL+
Sbjct  139  KPVDTAVAVLRGLGFDPELRPTADGHTEIHLYTCPFLELVSRNPDAICGLHVGVVRGALE  198

Query  193  TWGAPVTVDRLDAFVEPDLCLAHFT  217
              GAP     L+ F  P  C+   +
Sbjct  199  QAGAPPNDAVLEPFGAPTACVVRLS  223


>gi|327334654|gb|EGE76365.1| putative regulatory protein [Propionibacterium acnes HL097PA1]
Length=193

 Score =  104 bits (259),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 66/166 (40%), Positives = 86/166 (52%), Gaps = 22/166 (13%)

Query  36   IAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRLLA  95
            +A  LG+HP+T RFHLD LV   +VE     R   GRP  +F  V      G R YRLLA
Sbjct  39   LASDLGIHPSTARFHLDRLVEQRRVEATRRHRATRGRPHTVFTLV---SDEGPRAYRLLA  95

Query  96   EILASGLAAERDSRAMALSAGRAWGRQLEAPPAGADTEETIDHLVAVLDDLGFAPERRAS  155
            ++L   +A   +  AMA+  G+ WGR                 L+AVLDD+GF+P   A 
Sbjct  96   QMLVDEVAISNNPTAMAMRIGQRWGRHRRGD------------LIAVLDDMGFSPA--AE  141

Query  156  NGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGAPVTVD  201
             G   + LRHCPFL+LA     VVC +H G++ G     G   T+D
Sbjct  142  EG--GIVLRHCPFLDLARDHPQVVCSLHCGVVEGVT---GQAATID  182


>gi|313835077|gb|EFS72791.1| conserved hypothetical protein [Propionibacterium acnes HL037PA2]
 gi|314928193|gb|EFS92024.1| conserved hypothetical protein [Propionibacterium acnes HL044PA1]
 gi|314970022|gb|EFT14120.1| conserved hypothetical protein [Propionibacterium acnes HL037PA3]
 gi|328905874|gb|EGG25650.1| putative regulatory protein [Propionibacterium humerusii P08]
Length=195

 Score =  104 bits (259),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 62/168 (37%), Positives = 84/168 (50%), Gaps = 22/168 (13%)

Query  34   AAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRL  93
            A +A  L +HP+T RFHLD LV  G+ E     R   GRP  +F  +      G R YRL
Sbjct  37   AELASDLRIHPSTARFHLDRLVEQGRAEMTRQHRATRGRPHTVFTLI---SDEGPRAYRL  93

Query  94   LAEILASGLAAERDSRAMALSAGRAWGRQLEAPPAGADTEETIDHLVAVLDDLGFAPERR  153
            LA++    +A+  D  A A+  G+ WGR                 L+AVLDD+GF+P   
Sbjct  94   LAQMFVEEVASSNDPTATAMRIGQRWGRHRHGD------------LIAVLDDMGFSP---  138

Query  154  ASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGAPVTVD  201
             +     + LRHCPFL+LA     VVC +H G++ G     G   T+D
Sbjct  139  -AADEDGIVLRHCPFLDLARDHPQVVCSLHCGVVEGVT---GQAATID  182


>gi|258653779|ref|YP_003202935.1| transcriptional regulator [Nakamurella multipartita DSM 44233]
 gi|258557004|gb|ACV79946.1| putative transcriptional regulator [Nakamurella multipartita 
DSM 44233]
Length=250

 Score =  102 bits (255),  Expect = 3e-20, Method: Compositional matrix adjust.
 Identities = 84/213 (40%), Positives = 105/213 (50%), Gaps = 12/213 (5%)

Query  15   GRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERV-EPGRGRPGRP  73
            G+R AVL  L    VPM+I  +AG+ GVH NT R HL+ L   G   R  + GR R GRP
Sbjct  25   GQRAAVLELLQQQDVPMTITEVAGEFGVHQNTAREHLEALAGRGLAVRAQQTGRSR-GRP  83

Query  74   PLMFRAVRRTDSTGT--RRYRLLAEILASGLA-AERDSRAMALSAGRAWGRQL--EAPPA  128
               + A           R Y  LA  LA+ L+    D    A+ AGR WGR+L  +AP A
Sbjct  84   AWAYAAAVDNVEPDQRLRDYAGLATALAAHLSLTSNDPVPEAVQAGRVWGRELIGDAPIA  143

Query  129  GADTE--ETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGI  186
               T   +    +V +L DLGF P   A    + V LR CP L+ A+    VVC VHLGI
Sbjct  144  APRTSAAKARRRIVELLRDLGFDPV--ADQSARSVRLRRCPLLDAAKRYPQVVCQVHLGI  201

Query  187  MRGALQTWGAPVTVDRLDAFVEPDLC-LAHFTP  218
            +RGA+   G       +  F EP  C L   TP
Sbjct  202  VRGAMDVLGGSPERTAITPFAEPGACRLQLLTP  234


>gi|340771973|gb|EGR94487.1| hypothetical protein HMPREF1162_1503 [Propionibacterium acnes 
SK182B-JCVI]
Length=193

 Score =  102 bits (255),  Expect = 3e-20, Method: Compositional matrix adjust.
 Identities = 64/168 (39%), Positives = 85/168 (51%), Gaps = 22/168 (13%)

Query  34   AAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRL  93
            A +A  LG+HP+T RFHLD+LV  G+       R   GRP  +F  V      G R YRL
Sbjct  37   AELASDLGIHPSTARFHLDHLVEQGRATMTRRHRATRGRPHTLFILV---SDEGPRAYRL  93

Query  94   LAEILASGLAAERDSRAMALSAGRAWGRQLEAPPAGADTEETIDHLVAVLDDLGFAPERR  153
            LA++L   +    +  A A+  G+ WGR+              D LVAVLDD+GF+P   
Sbjct  94   LAQMLVEEVVLANNPTATAMRIGQRWGRRRP------------DDLVAVLDDMGFSPTVE  141

Query  154  ASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGAPVTVD  201
                   + LRHCPFL+LA     VVC +H G++ G     G   T+D
Sbjct  142  EDG----IELRHCPFLDLARDYPQVVCSLHCGVVEGVT---GQTATID  182


>gi|258653796|ref|YP_003202952.1| transcriptional regulator [Nakamurella multipartita DSM 44233]
 gi|258557021|gb|ACV79963.1| putative transcriptional regulator [Nakamurella multipartita 
DSM 44233]
Length=242

 Score =  102 bits (254),  Expect = 4e-20, Method: Compositional matrix adjust.
 Identities = 67/196 (35%), Positives = 94/196 (48%), Gaps = 5/196 (2%)

Query  27   SRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLMFRAVRRTDST  86
            S +P+ +  +A   G+H  TVRFHLD LV  GQV   +  R  PGRP  ++ A       
Sbjct  32   STIPLDVYQLAEATGLHITTVRFHLDVLVKAGQVSAQKTPRTTPGRPRTVYAAHAEESPP  91

Query  87   GTRRYRLLAEILASGLAAERDSRAMALSAGRAWGRQLEAPPAGADTEETIDH-LVAVLDD  145
               R          G       R  A  AGR W   L        T +   H +V +  +
Sbjct  92   DGYRPLAALLAANLGPTPRT-RRRRAEKAGRDWATSLIPTVDDVATPDEAAHRIVDLFAE  150

Query  146  LGFAPE---RRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGAPVTVDR  202
            + F PE     ++ G +++ LR CP+ ++A     VVC +HLG++ GAL   G P+T  R
Sbjct  151  MNFDPELVHPASATGEREIRLRACPYRDVAREHPDVVCAIHLGLLEGALTQLGKPLTTVR  210

Query  203  LDAFVEPDLCLAHFTP  218
            L  FV+P LCLA+ TP
Sbjct  211  LVPFVKPHLCLAYLTP  226



Lambda     K      H
   0.323    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 286119069840


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40