BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2621c
Length=224
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609758|ref|NP_217137.1| transcriptional regulatory protein ... 444 5e-123
gi|289746419|ref|ZP_06505797.1| hypothetical transcriptional reg... 443 1e-122
gi|254365289|ref|ZP_04981334.1| hypothetical transcriptional reg... 442 2e-122
gi|254232735|ref|ZP_04926062.1| hypothetical protein TBCG_02563 ... 436 2e-120
gi|31793807|ref|NP_856300.1| transcriptional regulatory protein ... 413 1e-113
gi|289762795|ref|ZP_06522173.1| hypothetical transcriptional reg... 409 1e-112
gi|167967284|ref|ZP_02549561.1| hypothetical transcriptional reg... 408 3e-112
gi|254818987|ref|ZP_05223988.1| hypothetical protein MintA_03626... 290 2e-76
gi|342858553|ref|ZP_08715208.1| hypothetical protein MCOL_06746 ... 289 2e-76
gi|118618607|ref|YP_906939.1| transcriptional regulator [Mycobac... 287 6e-76
gi|296170896|ref|ZP_06852433.1| regulatory protein [Mycobacteriu... 275 5e-72
gi|41408823|ref|NP_961659.1| hypothetical protein MAP2725c [Myco... 271 4e-71
gi|118465695|ref|YP_882681.1| hypothetical protein MAV_3499 [Myc... 271 6e-71
gi|333991045|ref|YP_004523659.1| transcriptional regulator [Myco... 236 3e-60
gi|120406790|ref|YP_956619.1| putative transcriptional regulator... 230 1e-58
gi|119714163|ref|YP_919305.1| transcriptional regulator [Nocardi... 214 1e-53
gi|108802250|ref|YP_642447.1| transcriptional regulator [Mycobac... 202 2e-50
gi|240170647|ref|ZP_04749306.1| transcriptional regulator [Mycob... 197 1e-48
gi|118473036|ref|YP_885519.1| ArsR family transcriptional regula... 177 1e-42
gi|331698394|ref|YP_004334633.1| putative transcriptional regula... 172 5e-41
gi|329939761|ref|ZP_08289062.1| transcriptional regulator [Strep... 170 1e-40
gi|336118919|ref|YP_004573691.1| hypothetical protein MLP_32740 ... 164 9e-39
gi|257057835|ref|YP_003135667.1| putative transcriptional regula... 162 3e-38
gi|111025043|ref|YP_707463.1| MarR family transcriptional regula... 160 1e-37
gi|119716337|ref|YP_923302.1| transcriptional regulator [Nocardi... 157 1e-36
gi|337763346|emb|CCB72054.1| Transcriptional regulator [Streptom... 152 3e-35
gi|226359477|ref|YP_002777254.1| SufR family transcriptional reg... 152 4e-35
gi|117927709|ref|YP_872260.1| transcriptional regulator [Acidoth... 140 1e-31
gi|119718524|ref|YP_925489.1| transcriptional regulator [Nocardi... 139 3e-31
gi|331697010|ref|YP_004333249.1| putative transcriptional regula... 137 8e-31
gi|296271191|ref|YP_003653823.1| putative transcriptional regula... 131 6e-29
gi|326384562|ref|ZP_08206241.1| transcriptional regulator [Gordo... 130 1e-28
gi|72163192|ref|YP_290849.1| transcriptional regulator [Thermobi... 126 2e-27
gi|145595458|ref|YP_001159755.1| hypothetical protein Strop_2939... 117 1e-24
gi|226359496|ref|YP_002777273.1| SufR family transcriptional reg... 115 3e-24
gi|317125120|ref|YP_004099232.1| transcriptional regulator [Intr... 111 9e-23
gi|54022958|ref|YP_117200.1| hypothetical protein nfa9910 [Nocar... 110 2e-22
gi|328757873|gb|EGF71489.1| transcriptional regulator, ArsR fami... 109 4e-22
gi|50841582|ref|YP_054809.1| putative regulatory protein [Propio... 108 7e-22
gi|145224071|ref|YP_001134749.1| putative transcriptional regula... 107 2e-21
gi|111025065|ref|YP_707485.1| ArsR family transcriptional regula... 105 4e-21
gi|119718200|ref|YP_925165.1| transcriptional regulator [Nocardi... 105 4e-21
gi|295129622|ref|YP_003580285.1| transcriptional regulator, ArsR... 105 6e-21
gi|282853138|ref|ZP_06262475.1| transcriptional regulator, ArsR ... 105 7e-21
gi|159038691|ref|YP_001537944.1| transcriptional regulator TrmB ... 105 7e-21
gi|327334654|gb|EGE76365.1| putative regulatory protein [Propion... 104 1e-20
gi|313835077|gb|EFS72791.1| conserved hypothetical protein [Prop... 104 1e-20
gi|258653779|ref|YP_003202935.1| transcriptional regulator [Naka... 102 3e-20
gi|340771973|gb|EGR94487.1| hypothetical protein HMPREF1162_1503... 102 3e-20
gi|258653796|ref|YP_003202952.1| transcriptional regulator [Naka... 102 4e-20
>gi|15609758|ref|NP_217137.1| transcriptional regulatory protein [Mycobacterium tuberculosis
H37Rv]
gi|15842161|ref|NP_337198.1| hypothetical protein MT2696 [Mycobacterium tuberculosis CDC1551]
gi|148662461|ref|YP_001283984.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis
H37Ra]
54 more sequence titles
Length=224
Score = 444 bits (1142), Expect = 5e-123, Method: Compositional matrix adjust.
Identities = 224/224 (100%), Positives = 224/224 (100%), Gaps = 0/224 (0%)
Query 1 MGVSVIIRSLQEPVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQV 60
MGVSVIIRSLQEPVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQV
Sbjct 1 MGVSVIIRSLQEPVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQV 60
Query 61 ERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWG 120
ERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWG
Sbjct 61 ERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWG 120
Query 121 RQLEAPPAGADTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVC 180
RQLEAPPAGADTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVC
Sbjct 121 RQLEAPPAGADTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVC 180
Query 181 PVHLGIMRGALQTWGAPVTVDRLDAFVEPDLCLAHFTPLEGAIR 224
PVHLGIMRGALQTWGAPVTVDRLDAFVEPDLCLAHFTPLEGAIR
Sbjct 181 PVHLGIMRGALQTWGAPVTVDRLDAFVEPDLCLAHFTPLEGAIR 224
>gi|289746419|ref|ZP_06505797.1| hypothetical transcriptional regulatory protein [Mycobacterium
tuberculosis 02_1987]
gi|289758752|ref|ZP_06518130.1| transcriptional regulatory protein [Mycobacterium tuberculosis
T85]
gi|298526097|ref|ZP_07013506.1| transcriptional regulator [Mycobacterium tuberculosis 94_M4241A]
6 more sequence titles
Length=224
Score = 443 bits (1139), Expect = 1e-122, Method: Compositional matrix adjust.
Identities = 223/224 (99%), Positives = 223/224 (99%), Gaps = 0/224 (0%)
Query 1 MGVSVIIRSLQEPVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQV 60
MGVSVIIRSLQEPVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQV
Sbjct 1 MGVSVIIRSLQEPVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQV 60
Query 61 ERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWG 120
ERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSR MALSAGRAWG
Sbjct 61 ERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRVMALSAGRAWG 120
Query 121 RQLEAPPAGADTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVC 180
RQLEAPPAGADTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVC
Sbjct 121 RQLEAPPAGADTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVC 180
Query 181 PVHLGIMRGALQTWGAPVTVDRLDAFVEPDLCLAHFTPLEGAIR 224
PVHLGIMRGALQTWGAPVTVDRLDAFVEPDLCLAHFTPLEGAIR
Sbjct 181 PVHLGIMRGALQTWGAPVTVDRLDAFVEPDLCLAHFTPLEGAIR 224
>gi|254365289|ref|ZP_04981334.1| hypothetical transcriptional regulatory protein [Mycobacterium
tuberculosis str. Haarlem]
gi|134150802|gb|EBA42847.1| hypothetical transcriptional regulatory protein [Mycobacterium
tuberculosis str. Haarlem]
Length=224
Score = 442 bits (1137), Expect = 2e-122, Method: Compositional matrix adjust.
Identities = 223/224 (99%), Positives = 223/224 (99%), Gaps = 0/224 (0%)
Query 1 MGVSVIIRSLQEPVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQV 60
MGVSVIIRSLQEPVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQV
Sbjct 1 MGVSVIIRSLQEPVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQV 60
Query 61 ERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWG 120
ERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWG
Sbjct 61 ERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWG 120
Query 121 RQLEAPPAGADTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVC 180
RQLEAPPAGADTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVC
Sbjct 121 RQLEAPPAGADTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVC 180
Query 181 PVHLGIMRGALQTWGAPVTVDRLDAFVEPDLCLAHFTPLEGAIR 224
PVHLGIMRG LQTWGAPVTVDRLDAFVEPDLCLAHFTPLEGAIR
Sbjct 181 PVHLGIMRGDLQTWGAPVTVDRLDAFVEPDLCLAHFTPLEGAIR 224
>gi|254232735|ref|ZP_04926062.1| hypothetical protein TBCG_02563 [Mycobacterium tuberculosis C]
gi|124601794|gb|EAY60804.1| hypothetical protein TBCG_02563 [Mycobacterium tuberculosis C]
Length=253
Score = 436 bits (1120), Expect = 2e-120, Method: Compositional matrix adjust.
Identities = 218/218 (100%), Positives = 218/218 (100%), Gaps = 0/218 (0%)
Query 1 MGVSVIIRSLQEPVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQV 60
MGVSVIIRSLQEPVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQV
Sbjct 1 MGVSVIIRSLQEPVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQV 60
Query 61 ERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWG 120
ERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWG
Sbjct 61 ERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWG 120
Query 121 RQLEAPPAGADTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVC 180
RQLEAPPAGADTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVC
Sbjct 121 RQLEAPPAGADTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVC 180
Query 181 PVHLGIMRGALQTWGAPVTVDRLDAFVEPDLCLAHFTP 218
PVHLGIMRGALQTWGAPVTVDRLDAFVEPDLCLAHFTP
Sbjct 181 PVHLGIMRGALQTWGAPVTVDRLDAFVEPDLCLAHFTP 218
>gi|31793807|ref|NP_856300.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97]
gi|121638510|ref|YP_978734.1| putative transcriptional regulatory protein [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|224991004|ref|YP_002645691.1| putative transcriptional regulatory protein [Mycobacterium bovis
BCG str. Tokyo 172]
gi|31619401|emb|CAD94839.1| POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium bovis
AF2122/97]
gi|121494158|emb|CAL72636.1| Possible transcriptional regulatory protein [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|224774117|dbj|BAH26923.1| putative transcriptional regulatory protein [Mycobacterium bovis
BCG str. Tokyo 172]
gi|341602548|emb|CCC65224.1| possible transcriptional regulatory protein [Mycobacterium bovis
BCG str. Moreau RDJ]
Length=223
Score = 413 bits (1061), Expect = 1e-113, Method: Compositional matrix adjust.
Identities = 223/224 (99%), Positives = 223/224 (99%), Gaps = 1/224 (0%)
Query 1 MGVSVIIRSLQEPVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQV 60
MGVSVIIRSLQEPVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQV
Sbjct 1 MGVSVIIRSLQEPVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQV 60
Query 61 ERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWG 120
ERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWG
Sbjct 61 ERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWG 120
Query 121 RQLEAPPAGADTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVC 180
RQLEAPPAGADTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVC
Sbjct 121 RQLEAPPAGADTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVC 180
Query 181 PVHLGIMRGALQTWGAPVTVDRLDAFVEPDLCLAHFTPLEGAIR 224
PVHLGIMRGALQTW APVTVDRLDAFVEPDLCLAHFTPLEGAIR
Sbjct 181 PVHLGIMRGALQTW-APVTVDRLDAFVEPDLCLAHFTPLEGAIR 223
>gi|289762795|ref|ZP_06522173.1| hypothetical transcriptional regulatory protein [Mycobacterium
tuberculosis GM 1503]
gi|289710301|gb|EFD74317.1| hypothetical transcriptional regulatory protein [Mycobacterium
tuberculosis GM 1503]
Length=221
Score = 409 bits (1052), Expect = 1e-112, Method: Compositional matrix adjust.
Identities = 205/205 (100%), Positives = 205/205 (100%), Gaps = 0/205 (0%)
Query 20 VLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLMFRA 79
VLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLMFRA
Sbjct 17 VLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLMFRA 76
Query 80 VRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWGRQLEAPPAGADTEETIDHL 139
VRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWGRQLEAPPAGADTEETIDHL
Sbjct 77 VRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWGRQLEAPPAGADTEETIDHL 136
Query 140 VAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGAPVT 199
VAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGAPVT
Sbjct 137 VAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGAPVT 196
Query 200 VDRLDAFVEPDLCLAHFTPLEGAIR 224
VDRLDAFVEPDLCLAHFTPLEGAIR
Sbjct 197 VDRLDAFVEPDLCLAHFTPLEGAIR 221
>gi|167967284|ref|ZP_02549561.1| hypothetical transcriptional regulatory protein [Mycobacterium
tuberculosis H37Ra]
Length=205
Score = 408 bits (1049), Expect = 3e-112, Method: Compositional matrix adjust.
Identities = 204/205 (99%), Positives = 205/205 (100%), Gaps = 0/205 (0%)
Query 20 VLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLMFRA 79
+LRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLMFRA
Sbjct 1 MLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLMFRA 60
Query 80 VRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWGRQLEAPPAGADTEETIDHL 139
VRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWGRQLEAPPAGADTEETIDHL
Sbjct 61 VRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWGRQLEAPPAGADTEETIDHL 120
Query 140 VAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGAPVT 199
VAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGAPVT
Sbjct 121 VAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGAPVT 180
Query 200 VDRLDAFVEPDLCLAHFTPLEGAIR 224
VDRLDAFVEPDLCLAHFTPLEGAIR
Sbjct 181 VDRLDAFVEPDLCLAHFTPLEGAIR 205
>gi|254818987|ref|ZP_05223988.1| hypothetical protein MintA_03626 [Mycobacterium intracellulare
ATCC 13950]
Length=247
Score = 290 bits (741), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 149/218 (69%), Positives = 171/218 (79%), Gaps = 6/218 (2%)
Query 12 EPVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPG 71
E GRRRAV+R L AS PMSIA IA +LGVHPNTVRFHLD+LV DGQVE VE R PG
Sbjct 31 ESAGRRRAVMRLLRASPEPMSIAGIADELGVHPNTVRFHLDSLVTDGQVEHVELDRKGPG 90
Query 72 RPPLMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWGRQLEA-----P 126
RPPLMFRAVR+ D GTR YRLLAEIL A ERD AL+AGRAWGR+++A P
Sbjct 91 RPPLMFRAVRQMDRGGTRHYRLLAEILTMAFATERDPGPKALAAGRAWGRKVDAELHPRP 150
Query 127 PAGADTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGI 186
A A+ EE I L+ VLD+LGFAPERR +G QQVGLRHCPFLELAE ++ VVCPVHLG+
Sbjct 151 DAPANAEEVIARLIEVLDELGFAPERRVVDGEQQVGLRHCPFLELAENRSSVVCPVHLGL 210
Query 187 MRGALQTWGAPVTVDRLDAFVEPDLCLAHFTPLEGAIR 224
M+GA++TWGAPV+VDRLD+FVEPDLCLAH T L+GA +
Sbjct 211 MQGAVETWGAPVSVDRLDSFVEPDLCLAHLT-LQGAAK 247
>gi|342858553|ref|ZP_08715208.1| hypothetical protein MCOL_06746 [Mycobacterium colombiense CECT
3035]
gi|342134257|gb|EGT87437.1| hypothetical protein MCOL_06746 [Mycobacterium colombiense CECT
3035]
Length=232
Score = 289 bits (740), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 151/221 (69%), Positives = 173/221 (79%), Gaps = 6/221 (2%)
Query 9 SLQEPVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRG 68
S+ E GRRRAV+R L AS PMSIA IA LGVHPNTVRFHLD+LVADGQVE VE R
Sbjct 13 SIGESAGRRRAVMRLLRASPDPMSIAGIADVLGVHPNTVRFHLDSLVADGQVENVELDRK 72
Query 69 RPGRPPLMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWGRQLEAP-- 126
PGRPPLMFRAVR+ D G R YRLLAEILA+ LA ERD AL+AGRAWG++++A
Sbjct 73 GPGRPPLMFRAVRQMDRGGPRHYRLLAEILATALATERDPGPKALAAGRAWGQKMDAELH 132
Query 127 --PAGAD-TEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVH 183
P AD EE I L+ VLD+LGFAPERR S+G QQVGLRHCPFLELAE + VVCPVH
Sbjct 133 PLPKDADGAEEAIARLIDVLDELGFAPERRVSDGEQQVGLRHCPFLELAENSSSVVCPVH 192
Query 184 LGIMRGALQTWGAPVTVDRLDAFVEPDLCLAHFTPLEGAIR 224
LG+M+GA++TWGAPV+VDRLD FVEPD+CLAH T L+GA +
Sbjct 193 LGLMQGAMETWGAPVSVDRLDPFVEPDMCLAHLT-LQGAAK 232
>gi|118618607|ref|YP_906939.1| transcriptional regulator [Mycobacterium ulcerans Agy99]
gi|183982095|ref|YP_001850386.1| transcriptional regulator [Mycobacterium marinum M]
gi|118570717|gb|ABL05468.1| transcriptional regulator [Mycobacterium ulcerans Agy99]
gi|183175421|gb|ACC40531.1| transcriptional regulator [Mycobacterium marinum M]
Length=223
Score = 287 bits (735), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 155/223 (70%), Positives = 178/223 (80%), Gaps = 1/223 (0%)
Query 1 MGVSVIIRSLQEPVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQV 60
MG I R EP GRRRAVLR L A P+SI AIA LGVHPNTVRFHLD LV DGQV
Sbjct 1 MGEGRIARMGGEPAGRRRAVLRVLRALGHPLSIVAIAEHLGVHPNTVRFHLDGLVDDGQV 60
Query 61 ERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWG 120
ERV+P R PGRPPLMFRAV++ D G R Y+LLAEIL++GLAAE DS AL+AGRAWG
Sbjct 61 ERVQPSRRGPGRPPLMFRAVQQMDRGGARHYQLLAEILSNGLAAESDSVDKALAAGRAWG 120
Query 121 RQLEAPPAGADTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVC 180
+L+AP E++IDHLV VLD LGFAPERR S+G+QQV LRHCPFLELAE ++GVVC
Sbjct 121 ERLQAPTTAHSAEKSIDHLVGVLDGLGFAPERRVSDGQQQVALRHCPFLELAENRSGVVC 180
Query 181 PVHLGIMRGALQTWGAPVTVDRLDAFVEPDLCLAHFTPLEGAI 223
P+HLG+MRGAL++WGAPVTV+RLD FVEPDLCLAH +P EGA+
Sbjct 181 PIHLGLMRGALESWGAPVTVERLDPFVEPDLCLAHLSP-EGAL 222
>gi|296170896|ref|ZP_06852433.1| regulatory protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295894445|gb|EFG74189.1| regulatory protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=226
Score = 275 bits (702), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 137/192 (72%), Positives = 157/192 (82%), Gaps = 5/192 (2%)
Query 30 PMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLMFRAVRRTDSTGTR 89
PMSIAAIA LGVHPNTVRFHLD+LV DGQVE VE R PGRPPLMFRAVR+ D GTR
Sbjct 28 PMSIAAIADVLGVHPNTVRFHLDSLVGDGQVEHVELDRKGPGRPPLMFRAVRQMDRGGTR 87
Query 90 RYRLLAEILASGLAAERDSRAMALSAGRAWGRQ----LEAPPAGADT-EETIDHLVAVLD 144
YRLLAE+LA+ AAE D+ A A++AGRAWG++ LEA PAG + EE IDHLV +LD
Sbjct 88 HYRLLAEVLATAFAAEPDAGAKAVAAGRAWGQKLDSSLEAVPAGTTSAEEAIDHLVNMLD 147
Query 145 DLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGAPVTVDRLD 204
+LGFAPERR ++G QQVGLRHCPFLELAE + VVCPVHLG+M+GA+ WGAPV+VDRLD
Sbjct 148 ELGFAPERRTADGEQQVGLRHCPFLELAENRTAVVCPVHLGLMQGAMDAWGAPVSVDRLD 207
Query 205 AFVEPDLCLAHF 216
AFVEPDLC+AH
Sbjct 208 AFVEPDLCVAHL 219
>gi|41408823|ref|NP_961659.1| hypothetical protein MAP2725c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41397182|gb|AAS05042.1| hypothetical protein MAP_2725c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336458902|gb|EGO37859.1| putative transcriptional regulator [Mycobacterium avium subsp.
paratuberculosis S397]
Length=234
Score = 271 bits (694), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 141/200 (71%), Positives = 156/200 (78%), Gaps = 6/200 (3%)
Query 30 PMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLMFRAVRRTDSTGTR 89
PMSIA IA LGVHPNTVRFHLD+LVADGQVE VE R PGRPPLMFRAVR+ D GTR
Sbjct 36 PMSIAGIADVLGVHPNTVRFHLDSLVADGQVEHVELDRKGPGRPPLMFRAVRQMDRGGTR 95
Query 90 RYRLLAEILASGLAAERDSRAMALSAGRAWGRQLEA-----PPAGADTEETIDHLVAVLD 144
YRLLAEILA AAE D AL+AGRAWG+QL+A P A E+ I LV VLD
Sbjct 96 HYRLLAEILAKAFAAETDPAPKALAAGRAWGQQLDAERRRLPRDAAGAEQAIAQLVDVLD 155
Query 145 DLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGAPVTVDRLD 204
+LGFAPERR +G QQVGLRHCPFLELAE + VVCPVHLG+M+GA++TWGAPV+VDRLD
Sbjct 156 ELGFAPERRVIDGEQQVGLRHCPFLELAENSSNVVCPVHLGLMQGAMETWGAPVSVDRLD 215
Query 205 AFVEPDLCLAHFTPLEGAIR 224
FVEPDLCLAH T L+GA R
Sbjct 216 PFVEPDLCLAHLT-LQGAGR 234
>gi|118465695|ref|YP_882681.1| hypothetical protein MAV_3499 [Mycobacterium avium 104]
gi|254775950|ref|ZP_05217466.1| hypothetical protein MaviaA2_14940 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|118166982|gb|ABK67879.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=234
Score = 271 bits (692), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 140/200 (70%), Positives = 156/200 (78%), Gaps = 6/200 (3%)
Query 30 PMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLMFRAVRRTDSTGTR 89
PMSIA IA LGVHPNTVRFHLD+LVADGQVE VE R PGRPPLMFRAVR+ D GTR
Sbjct 36 PMSIAGIADVLGVHPNTVRFHLDSLVADGQVEHVELDRKGPGRPPLMFRAVRQMDRGGTR 95
Query 90 RYRLLAEILASGLAAERDSRAMALSAGRAWGRQLEA-----PPAGADTEETIDHLVAVLD 144
YRLLAEILA AAE D AL+AGRAWG+QL+A P A E+ I LV VLD
Sbjct 96 HYRLLAEILAKAFAAETDPAPKALAAGRAWGQQLDAERRRLPRDAAGAEQAIAQLVDVLD 155
Query 145 DLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGAPVTVDRLD 204
+LGFAPERR +G QQVGLRHCPFLELAE + VVCPVHLG+M+GA+++WGAPV+VDRLD
Sbjct 156 ELGFAPERRVIDGEQQVGLRHCPFLELAENSSNVVCPVHLGLMQGAMESWGAPVSVDRLD 215
Query 205 AFVEPDLCLAHFTPLEGAIR 224
FVEPDLCLAH T L+GA R
Sbjct 216 PFVEPDLCLAHLT-LQGADR 234
>gi|333991045|ref|YP_004523659.1| transcriptional regulator [Mycobacterium sp. JDM601]
gi|333487013|gb|AEF36405.1| transcriptional regulator [Mycobacterium sp. JDM601]
Length=230
Score = 236 bits (601), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 119/202 (59%), Positives = 146/202 (73%), Gaps = 5/202 (2%)
Query 24 LCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLMFRAVRRT 83
+ A+ P+SIA IA +LGVHPNTVRFHLD LV +G+VE EP GRP LMFRA+R+
Sbjct 1 MQAADEPLSIAQIADELGVHPNTVRFHLDTLVEEGRVEHTEPDHKGRGRPALMFRAIRQM 60
Query 84 DSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWG---RQLEAPPAGADTEETIDHLV 140
D GTRR+RLLAEIL GLAA+ D AL+AGRAWG R L P +E+ D LV
Sbjct 61 DRGGTRRFRLLAEILTIGLAADSDPSGKALAAGRAWGQRLRPLNRPAHRVGADESTDQLV 120
Query 141 AVLDDLGFAPERRASN--GRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGAPV 198
+LD+LGF PE+ + G +Q+GLRHCPFLELAET VVCP+HLG+M+GAL+ W APV
Sbjct 121 DMLDELGFQPEQLEPDDAGEKQLGLRHCPFLELAETSTDVVCPIHLGLMQGALEAWDAPV 180
Query 199 TVDRLDAFVEPDLCLAHFTPLE 220
TVDRLD+F +PDLC+AH +E
Sbjct 181 TVDRLDSFAQPDLCVAHLKSME 202
>gi|120406790|ref|YP_956619.1| putative transcriptional regulator [Mycobacterium vanbaalenii
PYR-1]
gi|119959608|gb|ABM16613.1| transcriptional regulator [Mycobacterium vanbaalenii PYR-1]
Length=224
Score = 230 bits (586), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 131/209 (63%), Positives = 154/209 (74%), Gaps = 3/209 (1%)
Query 12 EPVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPG 71
EP GRRR VLR L A+ PMSI AIA L +HPNTVRFHLD LV+ GQVER+EP R RPG
Sbjct 8 EPPGRRRDVLRTLKAASGPMSIGAIADALDIHPNTVRFHLDRLVSQGQVERIEPDRRRPG 67
Query 72 RPPLMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWGRQLE--AP-PA 128
RPP MFRA+ + D G R YRLLAE+LA LAA+ D A + GRAWGR+L AP
Sbjct 68 RPPQMFRAMPQMDRAGPRHYRLLAEMLAMSLAADGDPPTRAQAGGRAWGRELNVRAPRRK 127
Query 129 GADTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMR 188
+ EE +D LV VLDD+GF PER + +QQ+GLRHCPFLELAETQ+ VVC +HLG+M+
Sbjct 128 QSGAEEAVDRLVEVLDDVGFVPERLGAGEKQQIGLRHCPFLELAETQSRVVCGIHLGLMQ 187
Query 189 GALQTWGAPVTVDRLDAFVEPDLCLAHFT 217
G L+ GAPVTVDRL+ F +PDLCLAH T
Sbjct 188 GVLERQGAPVTVDRLEPFAQPDLCLAHLT 216
>gi|119714163|ref|YP_919305.1| transcriptional regulator [Nocardioides sp. JS614]
gi|119526072|gb|ABL79442.1| transcriptional regulator [Nocardioides sp. JS614]
Length=215
Score = 214 bits (544), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 110/204 (54%), Positives = 139/204 (69%), Gaps = 4/204 (1%)
Query 16 RRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPL 75
RR AVL AL +S PMSI +A +LG+H NTVRFHL L G+VERVEP R PGRPPL
Sbjct 4 RREAVLDALRSSEAPMSILDLAHQLGLHANTVRFHLQVLADSGRVERVEPTRSSPGRPPL 63
Query 76 MFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWGRQLEA----PPAGAD 131
MFRA R D G R Y+LLA+ LA+ L+A+ +S A+ AGRAWG +L A A
Sbjct 64 MFRAHRGMDPAGPRNYQLLADALATRLSADNESTDKAVEAGRAWGHRLAAGTRSTTAVTT 123
Query 132 TEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGAL 191
++ D LV +L +LGF+P+RR+S R Q+ LRHCPFL+L V+CPVHLG+M+GA+
Sbjct 124 DDQATDQLVEMLGELGFSPQRRSSGRRAQIALRHCPFLDLVPEHENVICPVHLGLMQGAM 183
Query 192 QTWGAPVTVDRLDAFVEPDLCLAH 215
A VT++RL+ F EPDLCLAH
Sbjct 184 AAMSAAVTIERLEPFAEPDLCLAH 207
>gi|108802250|ref|YP_642447.1| transcriptional regulator [Mycobacterium sp. MCS]
gi|119871403|ref|YP_941355.1| transcriptional regulator [Mycobacterium sp. KMS]
gi|126438232|ref|YP_001073923.1| transcriptional regulator [Mycobacterium sp. JLS]
gi|108772669|gb|ABG11391.1| transcriptional regulator [Mycobacterium sp. MCS]
gi|119697492|gb|ABL94565.1| transcriptional regulator [Mycobacterium sp. KMS]
gi|126238032|gb|ABO01433.1| transcriptional regulator [Mycobacterium sp. JLS]
Length=212
Score = 202 bits (515), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/204 (53%), Positives = 134/204 (66%), Gaps = 1/204 (0%)
Query 16 RRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPL 75
RR+ VL L + +SIA IAG+L VHPNT RFHL+ L GQVE VE R +PGRPPL
Sbjct 4 RRQDVLAVLREAGTALSIAQIAGELAVHPNTARFHLEALAGTGQVEAVEADRAKPGRPPL 63
Query 76 MFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWGRQLEAPPAGADTEET 135
MFRAV D G R YR LA ILA LA + ++ A++AGR+WG P +
Sbjct 64 MFRAVAGMDPAGPRDYRTLAGILADALARQPNAARRAVTAGRSWGEHTAEPTRTRSRRQA 123
Query 136 IDHLVAVLDDLGFAPERR-ASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTW 194
+D L +L LGFAPE R + G ++GLR+CPFL+LA+T+ VVCPVHLG+M+GAL W
Sbjct 124 VDRLTDLLAGLGFAPEARPTAGGIGEIGLRNCPFLDLADTRRDVVCPVHLGLMQGALSRW 183
Query 195 GAPVTVDRLDAFVEPDLCLAHFTP 218
AP+TV+ L F EPDLC+AH P
Sbjct 184 KAPITVEALIPFAEPDLCVAHLAP 207
>gi|240170647|ref|ZP_04749306.1| transcriptional regulator [Mycobacterium kansasii ATCC 12478]
Length=141
Score = 197 bits (500), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 92/141 (66%), Positives = 119/141 (85%), Gaps = 1/141 (0%)
Query 84 DSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWGRQLEAPPAGADTEETIDHLVAVL 143
D G R YRLLAEIL++GLAAE DS+A AL+AGRAWG++LEAP ++ E++I+HLV VL
Sbjct 2 DRGGARHYRLLAEILSNGLAAEPDSQAKALAAGRAWGQRLEAPATDSNAEKSIEHLVGVL 61
Query 144 DDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGAPVTVDRL 203
D LGFAPERR S+G+ Q+GLRHCPFLE+AE+++ +VCP+HLG+M+GAL++W APV V+RL
Sbjct 62 DQLGFAPERRVSDGQHQLGLRHCPFLEVAESRSAIVCPIHLGLMQGALESWAAPVGVERL 121
Query 204 DAFVEPDLCLAHFTPLEGAIR 224
D F EPDLCLAH + L+GA R
Sbjct 122 DVFAEPDLCLAHLS-LKGAAR 141
>gi|118473036|ref|YP_885519.1| ArsR family transcriptional regulator [Mycobacterium smegmatis
str. MC2 155]
gi|118174323|gb|ABK75219.1| regulatory protein, ArsR [Mycobacterium smegmatis str. MC2 155]
Length=217
Score = 177 bits (448), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 101/208 (49%), Positives = 130/208 (63%), Gaps = 2/208 (0%)
Query 13 PVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGR 72
P GRR A+L+ L AS P +IA IA +LGVHPNTVRFHL+ L G+VE+V GR
Sbjct 9 PRGRRDAILQVLRASPQPRAIAGIADELGVHPNTVRFHLEALARAGRVEQVVGEAFGRGR 68
Query 73 PPLMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAW--GRQLEAPPAGA 130
PP+++RA RR D +G YRLLA IL +A D+ A+A GR+ G AP +
Sbjct 69 PPVLYRASRRMDPSGPTNYRLLASILTGYVARHPDAAAVAADLGRSTSPGLVTTAPHGPS 128
Query 131 DTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGA 190
+ + LV +L +LGF PE +++ LRHCPF LAE V C +HLG+M+GA
Sbjct 129 TRTQAVTELVDLLAELGFEPEPADGRRAREIRLRHCPFQNLAEEHGEVTCALHLGLMQGA 188
Query 191 LQTWGAPVTVDRLDAFVEPDLCLAHFTP 218
L+ APVTVDRL+ FVEPDLC+AH P
Sbjct 189 LRDLQAPVTVDRLEPFVEPDLCVAHLAP 216
>gi|331698394|ref|YP_004334633.1| putative transcriptional regulator [Pseudonocardia dioxanivorans
CB1190]
gi|326953083|gb|AEA26780.1| putative transcriptional regulator [Pseudonocardia dioxanivorans
CB1190]
Length=226
Score = 172 bits (435), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 112/204 (55%), Positives = 133/204 (66%), Gaps = 3/204 (1%)
Query 16 RRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPL 75
RR VL AL + P+ +A IA +L VHPNTVRFHLD LV G+ ERV PGRPPL
Sbjct 9 RRDVVLAALRDAAEPLGVAEIAARLRVHPNTVRFHLDALVDAGRAERVPVAPTGPGRPPL 68
Query 76 MFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWGRQLEAPPAGADTEET 135
+FRA D TG R YRLLA L LAA D A A +AGRAWG +L P A +
Sbjct 69 LFRARPGMDPTGPRNYRLLAAALVENLAAGPDPAAAAAAAGRAWGARLADGPPAASGPDG 128
Query 136 IDHLVAVLDDLGFAPERRASNGR--QQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQT 193
+ LV +LD+LGFAP+ A GR Q+ LRHCPFLELA T A VVCP+HLG+M+GAL
Sbjct 129 VRSLVTLLDELGFAPQWPAP-GRPDDQLALRHCPFLELATTDAQVVCPLHLGLMQGALTA 187
Query 194 WGAPVTVDRLDAFVEPDLCLAHFT 217
APV+V+RL+ F PDLCLAH +
Sbjct 188 LAAPVSVERLEPFAGPDLCLAHLS 211
>gi|329939761|ref|ZP_08289062.1| transcriptional regulator [Streptomyces griseoaurantiacus M045]
gi|329301331|gb|EGG45226.1| transcriptional regulator [Streptomyces griseoaurantiacus M045]
Length=223
Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 105/210 (50%), Positives = 128/210 (61%), Gaps = 7/210 (3%)
Query 16 RRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPL 75
RR AVL A+ + P+ IA +A +LGVHPNTVRFHLD LV G+VER PGRP
Sbjct 13 RRLAVLDAVRDAGAPVGIAEVAERLGVHPNTVRFHLDALVTQGRVERTVEQPSGPGRPRT 72
Query 76 MFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSA---GRAWGRQL--EAPPAGA 130
+ D +G R YRLLA +L S LA+ + A A GRAWGR L PP
Sbjct 73 VHTVRHGMDRSGARHYRLLARMLVSRLASTAPAAEAAAEATEAGRAWGRHLVERFPPGRR 132
Query 131 DT-EETIDHLVAVLDDLGFAPERRA-SNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMR 188
T ++ L AVLD+LGFAP + ++G + LRHCPFLELAE GVVCP+HLG+M+
Sbjct 133 PTVRASVARLTAVLDELGFAPRTQGETDGPAAIRLRHCPFLELAEEYRGVVCPLHLGLMQ 192
Query 189 GALQTWGAPVTVDRLDAFVEPDLCLAHFTP 218
GAL GAPV RL+ F EPD C+AH P
Sbjct 193 GALAELGAPVEATRLEPFAEPDTCVAHLAP 222
>gi|336118919|ref|YP_004573691.1| hypothetical protein MLP_32740 [Microlunatus phosphovorus NM-1]
gi|334686703|dbj|BAK36288.1| hypothetical protein MLP_32740 [Microlunatus phosphovorus NM-1]
Length=211
Score = 164 bits (415), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 103/199 (52%), Positives = 123/199 (62%), Gaps = 4/199 (2%)
Query 20 VLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLMFRA 79
VL L + P+ IA IA LGVHPNTVRFHL L+ GQV RVE PGRP +FRA
Sbjct 15 VLAELRTAGRPLRIAEIAEGLGVHPNTVRFHLGGLIQRGQVARVEAPPSGPGRPAQLFRA 74
Query 80 VRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWGRQLEAPPAGADTEETIDHL 139
V D G R YRLLAE+L + LAA + A A AGRAWG QL A EE + L
Sbjct 75 VPGMDPGGPRHYRLLAEVLLADLAAHPGAAAWAADAGRAWGTQLGA--ERTQPEEPVQRL 132
Query 140 VAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGAPVT 199
V ++ DLGFAPE+ A + +Q+ LRHCPFLELA+ VVC VHLG+ +G L W AP+T
Sbjct 133 VELMADLGFAPEQPADS--EQIALRHCPFLELAQQHPAVVCQVHLGMAQGVLAAWQAPIT 190
Query 200 VDRLDAFVEPDLCLAHFTP 218
+RL F EPD C+ P
Sbjct 191 AERLVPFAEPDRCVVQLAP 209
>gi|257057835|ref|YP_003135667.1| putative transcriptional regulator [Saccharomonospora viridis
DSM 43017]
gi|256587707|gb|ACU98840.1| predicted transcriptional regulator [Saccharomonospora viridis
DSM 43017]
Length=227
Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/208 (47%), Positives = 124/208 (60%), Gaps = 5/208 (2%)
Query 14 VGRRRA-VLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGR 72
+GR R VL L + P++ +A ++G H NT RFHLD LV G +R G GRPGR
Sbjct 15 LGRSRTRVLELLRTTDGPLTAHQVAQRVGFHVNTARFHLDALVEAGLAQRGTEGAGRPGR 74
Query 73 PPLMFRAVRRTDSTGTRRYRLLAEILASGLA-AERDSRAMALSAGRAWGRQLEAPPA--- 128
P +++RAV S G R YRLLA +L++ + + R A++AGR WGR L PA
Sbjct 75 PRMVYRAVAHRASEGPRSYRLLATMLSTLIDRVMPEPREAAIAAGREWGRYLAKRPAPFE 134
Query 129 GADTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMR 188
D EE I + VL + GFAP + G + + LRHCPF E+A VVC +HLG+M+
Sbjct 135 HVDAEEGIRRVANVLAEAGFAPGEVSGAGPRVLPLRHCPFQEVARVHGDVVCSLHLGLMQ 194
Query 189 GALQTWGAPVTVDRLDAFVEPDLCLAHF 216
G L GAPVT RL+ FVEP LCLAHF
Sbjct 195 GVLAEVGAPVTARRLEPFVEPSLCLAHF 222
>gi|111025043|ref|YP_707463.1| MarR family transcriptional regulator [Rhodococcus jostii RHA1]
gi|110824022|gb|ABG99305.1| possible transcriptional regulator, MarR family protein [Rhodococcus
jostii RHA1]
Length=227
Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/207 (47%), Positives = 122/207 (59%), Gaps = 6/207 (2%)
Query 17 RRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLM 76
R VL LCA+ PM + IA ++ +HPNT RFHLD LV G ER RPGRP ++
Sbjct 19 RNRVLDLLCAAAEPMGVQDIADRVDLHPNTARFHLDGLVDAGLAERRAEDSRRPGRPRMV 78
Query 77 FRAVRRTDSTGTRRYRLLAEILASGLAAER--DSRAMALSAGRAWGRQLEAPPAGA---D 131
+ A STG R YRLLAE+L +GL A+ + A +AG AWGR L PA + D
Sbjct 79 YAATPSDASTGQRSYRLLAEML-TGLIADTLPEPGRAAETAGEAWGRYLAERPAPSQRVD 137
Query 132 TEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGAL 191
+ + L VL + GFAP + R + LRHCPF E+AE VVC +HLG++RGAL
Sbjct 138 AADGVRRLSTVLAESGFAPGVVENLDRPVIPLRHCPFREVAERHRDVVCSLHLGLIRGAL 197
Query 192 QTWGAPVTVDRLDAFVEPDLCLAHFTP 218
AP+ DRL+ FVEP LCLAH P
Sbjct 198 AEVRAPLAADRLEPFVEPSLCLAHLIP 224
>gi|119716337|ref|YP_923302.1| transcriptional regulator [Nocardioides sp. JS614]
gi|119536998|gb|ABL81615.1| transcriptional regulator, ArsR family [Nocardioides sp. JS614]
Length=225
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/206 (43%), Positives = 118/206 (58%), Gaps = 5/206 (2%)
Query 16 RRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPL 75
RR VL L + P+S+A +A +G+H NT RFHLD LV DG ER R PGRP +
Sbjct 18 RRTEVLSMLRQADQPLSVAEVAEAMGLHVNTARFHLDGLVEDGLAERTTEPRETPGRPRI 77
Query 76 MFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWGRQL---EAPPAGADT 132
++ + S G R Y LLAE+L +++ +D+ + + G+AWGR L AP DT
Sbjct 78 LYAS--DGPSLGPRSYELLAEMLTGFVSSLQDTGSGTVELGKAWGRHLIERSAPSERVDT 135
Query 133 EETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQ 192
E + L +LD +GF PE ++ +V L CPF E+AE VVC +HLG+M+GAL+
Sbjct 136 SEAVVRLDRMLDAIGFQPESETTDAGAEVRLHRCPFREVAEKHTDVVCAIHLGLMQGALE 195
Query 193 TWGAPVTVDRLDAFVEPDLCLAHFTP 218
APVT L FV P LC+A P
Sbjct 196 EIDAPVTATSLQPFVTPHLCVARLEP 221
>gi|337763346|emb|CCB72054.1| Transcriptional regulator [Streptomyces cattleya NRRL 8057]
Length=220
Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 104/213 (49%), Positives = 122/213 (58%), Gaps = 7/213 (3%)
Query 16 RRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVER-VEPGRGRPGRPP 74
RR AVL AL A+ P+ +A ++ +LGVH NTVRFHLD LVADG VE VEP GR GRP
Sbjct 9 RRHAVLDALRAAPGPLGVAELSDRLGVHANTVRFHLDALVADGAVESTVEPPAGR-GRPR 67
Query 75 LMFRAVRRTDSTGTRRYRLLAEILASGLAAE-RDSRAMALSAGRAWGRQL---EAPPAGA 130
++ D G R Y+LLA IL LAA ++ A AG WGR L AP
Sbjct 68 TVYAPRPGMDRGGERGYQLLARILLGHLAAAGPEAHDDARRAGHTWGRFLVDRTAPHHRP 127
Query 131 DTEETIDHLVAVLDDLGFAPE-RRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRG 189
E L +L LGF PE A+ + + LRHCPFLELAE A +VC VHLG+MRG
Sbjct 128 TAAEATARLSTLLAGLGFQPEPSDATPAPEAIRLRHCPFLELAEESATLVCSVHLGLMRG 187
Query 190 ALQTWGAPVTVDRLDAFVEPDLCLAHFTPLEGA 222
AL APV V RL+ F PD CLA P A
Sbjct 188 ALAELDAPVRVARLEPFATPDTCLARLEPAAAA 220
>gi|226359477|ref|YP_002777254.1| SufR family transcriptional regulator [Rhodococcus opacus B4]
gi|226237961|dbj|BAH48309.1| putative SufR family transcriptional regulator [Rhodococcus opacus
B4]
Length=230
Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 96/207 (47%), Positives = 121/207 (59%), Gaps = 6/207 (2%)
Query 17 RRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLM 76
R VL LC + PM + IA ++ +HPNT RFHLD LV G ER R RPGRP ++
Sbjct 19 RNRVLELLCVAAEPMGVQDIAERVDLHPNTARFHLDGLVDTGLAERRAEDRRRPGRPRMV 78
Query 77 FRAVRRTDSTGTRRYRLLAEILASGLAAER--DSRAMALSAGRAWGRQLEAPPAGA---D 131
+ A STG R YRLLAE+L +GL + + A +AG AWGR L PA + D
Sbjct 79 YAATTSDASTGRRSYRLLAEML-TGLIGDTLPEPGQAAETAGEAWGRYLAERPAPSQRVD 137
Query 132 TEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGAL 191
+ + L VL + GFAP R + LRHCPF E+AE VVC +HLG++RGAL
Sbjct 138 AADGVRRLSTVLAESGFAPGVVDDLTRPVIPLRHCPFREVAERHRDVVCSLHLGLIRGAL 197
Query 192 QTWGAPVTVDRLDAFVEPDLCLAHFTP 218
AP+ DRL+ FVEP LCLA+ TP
Sbjct 198 AEVRAPLAADRLEPFVEPSLCLAYLTP 224
>gi|117927709|ref|YP_872260.1| transcriptional regulator [Acidothermus cellulolyticus 11B]
gi|117648172|gb|ABK52274.1| transcriptional regulator [Acidothermus cellulolyticus 11B]
Length=255
Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/203 (43%), Positives = 112/203 (56%), Gaps = 5/203 (2%)
Query 15 GRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPP 74
RR A+L L A+ P+SI IA GVH NT RFHLD LV +G V R R PGRP
Sbjct 16 ARRAAILDHLRAADRPLSITEIAEATGVHANTARFHLDRLVDEGLVSRSAEPRDTPGRPR 75
Query 75 LMFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWGRQLEAPPAGAD--- 131
+++ A G R Y LLAE+L +A+ S A GR WG+ L PA ++
Sbjct 76 ILYAAT--ATDPGPRSYALLAEMLTGLVASIEKSTDGARKTGRQWGQHLVERPAPSEQIS 133
Query 132 TEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGAL 191
T+E + + AVLD +GF PE R +G + LRHCPF E+A +VC +H G++ GA+
Sbjct 134 TDEAVRRVNAVLDAIGFRPEMRKLDGETEFLLRHCPFREVALRHTDIVCALHRGLIEGAV 193
Query 192 QTWGAPVTVDRLDAFVEPDLCLA 214
AP+ V L FV P LC A
Sbjct 194 GELHAPLEVMDLRPFVTPTLCTA 216
>gi|119718524|ref|YP_925489.1| transcriptional regulator [Nocardioides sp. JS614]
gi|119539185|gb|ABL83802.1| transcriptional regulator [Nocardioides sp. JS614]
Length=261
Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 88/204 (44%), Positives = 112/204 (55%), Gaps = 4/204 (1%)
Query 17 RRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLM 76
R VL L + PM+ +A+ +LG+H N+ RFHLD L D V R R PGRP ++
Sbjct 52 RARVLALLQDAGEPMTASAVGARLGLHVNSARFHLDALAEDALVVREREDRSTPGRPKVL 111
Query 77 FRAVRRTDSTGTRRYRLLAEILASGLAAE-RDSRAMALSAGRAWGRQLE--APPAG-ADT 132
+ + + R YRLLAEIL S LA + A A AG AWGR L APP AD
Sbjct 112 YTVAQAAPAVTHRSYRLLAEILTSILAGRLPEPSAAAEEAGVAWGRYLAPAAPPYQRADR 171
Query 133 EETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQ 192
E++ LV LD +GF G ++ + HCPFLE+AE VVC VHLG+MRG L+
Sbjct 172 SESLVRLVDTLDRIGFDSHVVDEPGDLRLEVSHCPFLEVAEQHHDVVCAVHLGLMRGILE 231
Query 193 TWGAPVTVDRLDAFVEPDLCLAHF 216
GA V L+ VEP C+AH
Sbjct 232 QTGATVRATGLEPLVEPSRCIAHL 255
>gi|331697010|ref|YP_004333249.1| putative transcriptional regulator [Pseudonocardia dioxanivorans
CB1190]
gi|326951699|gb|AEA25396.1| putative transcriptional regulator [Pseudonocardia dioxanivorans
CB1190]
Length=221
Score = 137 bits (346), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 95/216 (44%), Positives = 119/216 (56%), Gaps = 14/216 (6%)
Query 16 RRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPL 75
RR +L + + P+ + +A G+HPNT RFHLD LVADG ++ GRP
Sbjct 4 RREQILEIVQQALEPVEVGEVARAAGIHPNTARFHLDALVADGVLDCATGAPAGRGRPRH 63
Query 76 MFRAVRRTDSTGT-RRYRLLAEILASGLAAE-RDSRAMALSAGRAWGRQLEAPPAGADT- 132
+RA R + GT RRY+LLAEIL S L D+ A +AGRAWG L PA A
Sbjct 64 TYRA-RPGQARGTARRYQLLAEILLSHLELRGEDAADEATTAGRAWGAYLAPRPAPARAV 122
Query 133 --EETIDHLVAVLDDLGFAPER--------RASNGRQQVGLRHCPFLELAETQAGVVCPV 182
+ + L+ +L DL FAPE A++ V LRHCPFLELA Q +VC V
Sbjct 123 RPDAALTQLLTMLGDLDFAPEPVHTRPDGVDAADWPDVVRLRHCPFLELAVPQRDLVCRV 182
Query 183 HLGIMRGALQTWGAPVTVDRLDAFVEPDLCLAHFTP 218
HLG+M+GAL APV+V L F EP CLAH P
Sbjct 183 HLGLMQGALAELKAPVSVTSLVPFEEPGACLAHLAP 218
>gi|296271191|ref|YP_003653823.1| putative transcriptional regulator [Thermobispora bispora DSM
43833]
gi|296093978|gb|ADG89930.1| putative transcriptional regulator [Thermobispora bispora DSM
43833]
Length=222
Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 87/202 (44%), Positives = 107/202 (53%), Gaps = 12/202 (5%)
Query 17 RRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLM 76
R AVL L + P++I+ IA +G+HPNTVR HL L+ G V R RPGRP +
Sbjct 7 RVAVLETLRRAGRPLAISEIADAVGLHPNTVRAHLALLIEHGHVAGTREDRDRPGRPRTL 66
Query 77 FRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWG-----RQLEAPPAGAD 131
+ AVR + + R YRLLAEIL L D A+ AGR + R L PAG
Sbjct 67 YTAVRTQEDSDARGYRLLAEILLGYLEHHGDGAGAAVDAGRRYATRALPRDL---PAGGS 123
Query 132 TEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGAL 191
T+D +VA+LD GF P A V L HCPF ELA+ VC VHLG+++GAL
Sbjct 124 V--TVDAIVALLDRAGFEPAVSADG--ATVELHHCPFRELAQADPETVCAVHLGLLQGAL 179
Query 192 QTWGAPVTVDRLDAFVEPDLCL 213
GAP RL F P CL
Sbjct 180 TELGAPAEGVRLTPFARPGQCL 201
>gi|326384562|ref|ZP_08206241.1| transcriptional regulator [Gordonia neofelifaecis NRRL B-59395]
gi|326196696|gb|EGD53891.1| transcriptional regulator [Gordonia neofelifaecis NRRL B-59395]
Length=197
Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/201 (42%), Positives = 108/201 (54%), Gaps = 9/201 (4%)
Query 17 RRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLM 76
R AVL AL + P+++A +A G+ P TVRFHL LV DG V PGRP L+
Sbjct 2 RDAVLTALHEADAPVTVADLAMTTGIAPTTVRFHLRALVDDGLVVTETARHDGPGRPRLL 61
Query 77 FRAVRRTDSTGTRRYRLLAEILASGLAAERDSRAMALSAGRAWGRQLEAPPAGADTEETI 136
+++ D +G R Y LLA + L + A +AGR+WG + A + +
Sbjct 62 YQSRPAMDPSGPRNYELLAGVAIQALTELPRAVEHATAAGRSWGARRAHGSA-----DPV 116
Query 137 DHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGA 196
D L++VLDD GFAPE R L CPFLELA+ GV C +H GIM+G L G
Sbjct 117 DDLMSVLDDFGFAPEPVDDGIR----LNRCPFLELAKDHPGVTCSIHRGIMQGVLDAHGL 172
Query 197 PVTVDRLDAFVEPDLCLAHFT 217
+ RLDAFV+ D CLA T
Sbjct 173 DASRVRLDAFVDGDHCLASIT 193
>gi|72163192|ref|YP_290849.1| transcriptional regulator [Thermobifida fusca YX]
gi|71916924|gb|AAZ56826.1| transcriptional regulator [Thermobifida fusca YX]
Length=224
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/207 (43%), Positives = 114/207 (56%), Gaps = 11/207 (5%)
Query 17 RRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLM 76
R AV AL + P+++ +A ++G+H NTVR HL L G V R +PGRP L+
Sbjct 19 RVAVWEALRRAPGPLTVQDLAQRVGLHANTVRGHLAILAERGYVTSAPEERDQPGRPRLL 78
Query 77 FRAVRRTDSTGT-RRYRLLAEILASGLAAERDSRAMALSA-GRAWGRQL-EAPPAG--AD 131
+ AV TD T R YRLLAE+L LA A A GR++GR++ AP AG D
Sbjct 79 YSAV--TDETAALRNYRLLAEMLVDYLAETAADHAAAAIDAGRSYGRRMVHAPQAGERVD 136
Query 132 TEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGAL 191
+ I + +LD GF P R A+ + L CPF ELAE+ +VC +HLG+MRG L
Sbjct 137 ADTAIRAVATLLDQAGFRPRRSAAG----IDLHRCPFRELAESAPDIVCGIHLGMMRGVL 192
Query 192 QTWGAPVTVDRLDAFVEPDLCLAHFTP 218
GAPV RL F EPD C+A P
Sbjct 193 AELGAPVEAVRLRPFAEPDRCVAELRP 219
>gi|145595458|ref|YP_001159755.1| hypothetical protein Strop_2939 [Salinispora tropica CNB-440]
gi|145304795|gb|ABP55377.1| transcriptional regulator [Salinispora tropica CNB-440]
Length=238
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/211 (36%), Positives = 114/211 (55%), Gaps = 6/211 (2%)
Query 17 RRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLM 76
R ++L A+ ++IA I+ + G+HP+T R HLD LV G + + G+PGRP
Sbjct 29 RASILELTRAADGGLTIAEISARTGLHPSTARSHLDRLVNAGLLVKARSSGGQPGRPAWR 88
Query 77 FRAVRRTDSTGTRRYRLLAEILASGLAAER--DSRAMALSAGRAWGRQLEAPPAGADTEE 134
+R V ++ YR L L LA + D+RA A+ AG WGR L A A ++
Sbjct 89 YRTVPE-EAPAPAPYRALTAALLDHLARQSRGDARAEAVRAGHNWGRHLAA--ATPRGKK 145
Query 135 TIDHLVAVLDDLGFAPE-RRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQT 193
+D +AVL LGF P+ ++ ++G ++ L CPFLEL +C +H+G++RGAL+
Sbjct 146 PVDTAMAVLRGLGFDPDLKQTADGHTEIHLYTCPFLELVSQNPDAICGLHVGVVRGALEQ 205
Query 194 WGAPVTVDRLDAFVEPDLCLAHFTPLEGAIR 224
GAP + L+ F P C+ + GA R
Sbjct 206 AGAPASDAVLEPFGAPTACVVRLSLPSGATR 236
>gi|226359496|ref|YP_002777273.1| SufR family transcriptional regulator [Rhodococcus opacus B4]
gi|226237980|dbj|BAH48328.1| putative SufR family transcriptional regulator [Rhodococcus opacus
B4]
Length=229
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/209 (40%), Positives = 110/209 (53%), Gaps = 12/209 (5%)
Query 16 RRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQV----ERVEPGRGRPG 71
RR +L AL AS PM+I +A +H TVRFHLD L + G V ER P RGRP
Sbjct 22 RRVQLLDALRASPTPMAIGELAALCELHVTTVRFHLDALTSAGLVSAEPER-NPARGRPR 80
Query 72 RPPLMFRAVRRTD-STGTRRYRLLAEILASGLAA-ERDSRAMALSAGRAWGRQ--LEAPP 127
R ++RA+ + Y+ LA +LA+ A+ E D A A +AGRAW R E P
Sbjct 81 R---LYRALAPLEPGHADSGYQRLARVLAAHWASSEDDPVARAEAAGRAWARDDLTETPG 137
Query 128 AGADTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIM 187
+ E+ L + ++GF PE AS ++ L CPF +A VVC +HLG+M
Sbjct 138 SPRSIEDAASTLTTLFAEMGFDPELEASEDEMRIRLHACPFESVARQSPNVVCALHLGLM 197
Query 188 RGALQTWGAPVTVDRLDAFVEPDLCLAHF 216
RG L GAP + +RL + P C+AH
Sbjct 198 RGVLDRLGAPESDNRLIPWETPRTCVAHL 226
>gi|317125120|ref|YP_004099232.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
gi|315589208|gb|ADU48505.1| putative transcriptional regulator [Intrasporangium calvum DSM
43043]
Length=237
Score = 111 bits (277), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 86/210 (41%), Positives = 105/210 (50%), Gaps = 18/210 (8%)
Query 17 RRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLM 76
R VL AL P + A +AG+LG HPNT RFHL+ L G V R R PGRP
Sbjct 19 RARVLAALRELGGPATAAELAGRLGTHPNTARFHLEALCVAGVVSREREDRTVPGRPRTH 78
Query 77 FRAVRRTDSTGTRR-YRLLAEILASGLAAER-DSRAMALSAGRAWGRQLEAPPAGADTEE 134
+ V G+RR YRLLAEILA+ L D A AGRA+GR AGA
Sbjct 79 Y--VAGPAPGGSRRSYRLLAEILAAQLGTSAPDPGGTAARAGRAFGRA-----AGAGRRH 131
Query 135 TIDHLVA------VLDDLGFA--PERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGI 186
L A L +GF P R + R ++ + CPFLE+A VVC VH G+
Sbjct 132 VGSDLAAAGLVVDTLSGMGFTSLPSREDPD-RIRIDVTSCPFLEVATQHLDVVCAVHRGL 190
Query 187 MRGALQTWGAPVTVDRLDAFVEPDLCLAHF 216
M G L+ GAP+ V L+ V P C+AH
Sbjct 191 MEGLLEATGAPLRVASLEPLVRPTHCVAHL 220
>gi|54022958|ref|YP_117200.1| hypothetical protein nfa9910 [Nocardia farcinica IFM 10152]
gi|54014466|dbj|BAD55836.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=254
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/207 (41%), Positives = 115/207 (56%), Gaps = 13/207 (6%)
Query 17 RRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERV-EPGRGRPGRPPL 75
RR +L L + P+ +A G H TVRFHLD L + V + +P RGR GRP +
Sbjct 7 RRRLLAILRGASEPLDAQELARITGQHVTTVRFHLDVLTKESLVRQFQQPPRGR-GRPRI 65
Query 76 MFRAVRRTDSTGTRRYRLLAEILASGLAAERDSRA-MALSAGRAWGRQLEAPPAGADTEE 134
+RAV+RT Y+ LA++LA L + SR+ A++AGRAWG +L+A +T
Sbjct 66 GYRAVQRTLG-----YQELAQVLAEQLGPDSRSRSEAAVAAGRAWGAKLDAEERRIETLA 120
Query 135 TIDHL-VAVLDDLGFAPERRASNGRQ-QVGLRH--CPFLELAETQAGVVCPVHLGIMRGA 190
+ + V +L +LGFAPER S QV +R CP +LA T VVC VHLG++
Sbjct 121 DVREVTVGLLSELGFAPERDPSGEESDQVVIRMTGCPLRDLARTHTDVVCGVHLGLIEEV 180
Query 191 LQTWGAPVTVD-RLDAFVEPDLCLAHF 216
L G V+ RL FVEP+LC+A
Sbjct 181 LDRSGERGAVNVRLHPFVEPELCVARL 207
>gi|328757873|gb|EGF71489.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL020PA1]
Length=193
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 68/168 (41%), Positives = 89/168 (53%), Gaps = 22/168 (13%)
Query 34 AAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRL 93
A +A LG+HP+T RFHLD+LV G+VE R GRP +F V G R YRL
Sbjct 37 AELASDLGIHPSTARFHLDHLVEQGRVEATRRHRATRGRPHTVFTLV---SDEGPRAYRL 93
Query 94 LAEILASGLAAERDSRAMALSAGRAWGRQLEAPPAGADTEETIDHLVAVLDDLGFAPERR 153
LA++L +A + AMA+ G+ WGR L+AVLDD+GF+P
Sbjct 94 LAQMLVDEVAISNNPTAMAMRIGQRWGRHRRGD------------LIAVLDDMGFSPA-- 139
Query 154 ASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGAPVTVD 201
A G + LRHCPFL+LA VVC +H G++ G G T+D
Sbjct 140 AEEG--GIVLRHCPFLDLARDHPQVVCSLHCGVVEGVT---GQAATID 182
>gi|50841582|ref|YP_054809.1| putative regulatory protein [Propionibacterium acnes KPA171202]
gi|289424448|ref|ZP_06426231.1| transcriptional regulator, ArsR family [Propionibacterium acnes
SK187]
gi|289427546|ref|ZP_06429259.1| transcriptional regulator, ArsR family [Propionibacterium acnes
J165]
34 more sequence titles
gi|335052617|ref|ZP_08545496.1| transcriptional regulator, ArsR family [Propionibacterium sp.
409-HC1]
gi|335054961|ref|ZP_08547757.1| transcriptional regulator, ArsR family [Propionibacterium sp.
434-HC2]
gi|342213235|ref|ZP_08705960.1| transcriptional regulator, ArsR family [Propionibacterium sp.
CC003-HC2]
gi|50839184|gb|AAT81851.1| putative regulatory protein [Propionibacterium acnes KPA171202]
gi|289155145|gb|EFD03827.1| transcriptional regulator, ArsR family [Propionibacterium acnes
SK187]
gi|289159476|gb|EFD07667.1| transcriptional regulator, ArsR family [Propionibacterium acnes
J165]
gi|313792805|gb|EFS40886.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL110PA1]
gi|313803468|gb|EFS44650.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL110PA2]
gi|313806961|gb|EFS45459.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL087PA2]
gi|313814122|gb|EFS51836.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL025PA1]
gi|313817744|gb|EFS55458.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL046PA2]
gi|313821429|gb|EFS59143.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL036PA1]
gi|313824625|gb|EFS62339.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL036PA2]
gi|313826295|gb|EFS64009.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL063PA1]
gi|314926471|gb|EFS90302.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL036PA3]
gi|314961431|gb|EFT05532.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL002PA2]
gi|314964179|gb|EFT08279.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL082PA1]
gi|314980152|gb|EFT24246.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL072PA2]
gi|314987007|gb|EFT31099.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL005PA2]
gi|314990499|gb|EFT34590.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL005PA3]
gi|315078915|gb|EFT50933.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL053PA2]
gi|315081640|gb|EFT53616.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL078PA1]
gi|315082966|gb|EFT54942.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL027PA2]
gi|315086713|gb|EFT58689.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL002PA3]
gi|315088116|gb|EFT60092.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL072PA1]
gi|315107621|gb|EFT79597.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL030PA1]
gi|327333777|gb|EGE75494.1| putative regulatory protein [Propionibacterium acnes HL096PA3]
gi|327444761|gb|EGE91415.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL013PA2]
gi|327457312|gb|EGF03967.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL092PA1]
gi|332674491|gb|AEE71307.1| putative regulatory protein [Propionibacterium acnes 266]
gi|333763193|gb|EGL40656.1| transcriptional regulator, ArsR family [Propionibacterium sp.
409-HC1]
gi|333763318|gb|EGL40778.1| transcriptional regulator, ArsR family [Propionibacterium sp.
434-HC2]
gi|335276503|gb|AEH28408.1| putative regulatory protein [Propionibacterium acnes 6609]
gi|340768779|gb|EGR91304.1| transcriptional regulator, ArsR family [Propionibacterium sp.
CC003-HC2]
Length=193
Score = 108 bits (269), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 68/168 (41%), Positives = 88/168 (53%), Gaps = 22/168 (13%)
Query 34 AAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRL 93
A +A LG+HP+T RFHLD LV G+VE R GRP +F V G R YRL
Sbjct 37 AELASDLGIHPSTARFHLDRLVEQGRVEATRRHRATRGRPHTVFTLV---SDEGPRAYRL 93
Query 94 LAEILASGLAAERDSRAMALSAGRAWGRQLEAPPAGADTEETIDHLVAVLDDLGFAPERR 153
LA++L +A + AMA+ G+ WGR L+AVLDD+GF+P
Sbjct 94 LAQMLVDEVAISNNPTAMAMRIGQRWGRHRRGD------------LIAVLDDMGFSPA-- 139
Query 154 ASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGAPVTVD 201
A G + LRHCPFL+LA VVC +H G++ G G T+D
Sbjct 140 AEEG--GIVLRHCPFLDLARDHPQVVCSLHCGVVEGVT---GQAATID 182
>gi|145224071|ref|YP_001134749.1| putative transcriptional regulator [Mycobacterium gilvum PYR-GCK]
gi|315444408|ref|YP_004077287.1| transcriptional regulator [Mycobacterium sp. Spyr1]
gi|145216557|gb|ABP45961.1| transcriptional regulator [Mycobacterium gilvum PYR-GCK]
gi|315262711|gb|ADT99452.1| predicted transcriptional regulator [Mycobacterium sp. Spyr1]
Length=233
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/209 (38%), Positives = 103/209 (50%), Gaps = 20/209 (9%)
Query 13 PVGRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGR 72
P+ R+R + + P+ I A+A L +HPNTVR HLD L G ERV + GR
Sbjct 21 PLSRQRLCVLDYVRTHAPVRITAVAAALDLHPNTVREHLDALTGHGLAERVTETPSKRGR 80
Query 73 PPLMFRAVRRTDSTGTRRYRLLAEILASGLA-----AERDSRAMALSAGRAWGRQLEAPP 127
P ++R + + Y LA LA +A ERD+RA AG +WG +L
Sbjct 81 PAALYRPSAADPAIPAQDYAGLATALAGHIARTSTQPERDARA----AGASWGHEL---- 132
Query 128 AGADTEETID---HLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHL 184
DT T D ++ VL LGF P+ +G + LR CP LE A +VC VHL
Sbjct 133 -CDDTVTTDDPRAAVLTVLARLGFGPDADGPDG--SIALRSCPLLEAARRYPAIVCQVHL 189
Query 185 GIMRGALQTWGAPV-TVDRLDAFVEPDLC 212
GI+ G L+ +GA T L AF EP C
Sbjct 190 GIVEGVLERFGAVTDTAPELVAFAEPGAC 218
>gi|111025065|ref|YP_707485.1| ArsR family transcriptional regulator [Rhodococcus jostii RHA1]
gi|110824044|gb|ABG99327.1| possible transcriptional regulator, ArsR family protein [Rhodococcus
jostii RHA1]
Length=229
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/208 (37%), Positives = 104/208 (50%), Gaps = 10/208 (4%)
Query 16 RRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVE---RVEPGRGRPGR 72
RR +L AL AS PM++ +A +H TVRFHLD L G V P RGRP R
Sbjct 22 RRVQLLDALRASPTPMTVGELAALCELHVTTVRFHLDALTGAGLVSAEPERNPARGRPRR 81
Query 73 PPLMFRAVRRTD-STGTRRYRLLAEILASGLAA-ERDSRAMALSAGRAWGRQLEAPPAGA 130
++RA+ + Y+ LA +LA+ A+ E D A +AGRAW +GA
Sbjct 82 ---LYRALAPLEPGHADSGYQGLARVLAAHWASSEDDPVGRAEAAGRAWALDDLTGTSGA 138
Query 131 --DTEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMR 188
E+ L + ++GF PE + ++ L CPF +A VVC +HLG+MR
Sbjct 139 PRSIEDAASTLTTLFAEMGFDPELESEPEEMRIRLHACPFESVARQSPNVVCALHLGLMR 198
Query 189 GALQTWGAPVTVDRLDAFVEPDLCLAHF 216
G L GAP T +RL + P C+AH
Sbjct 199 GVLDRLGAPETDNRLIPWETPRTCIAHL 226
>gi|119718200|ref|YP_925165.1| transcriptional regulator [Nocardioides sp. JS614]
gi|119538861|gb|ABL83478.1| transcriptional regulator [Nocardioides sp. JS614]
Length=231
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 86/207 (42%), Positives = 107/207 (52%), Gaps = 11/207 (5%)
Query 17 RRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERV--EPGRGRPGRPP 74
R AVL+ L +AA+A G+HPNTVR HL+ LVADG V RV EP +GR GRP
Sbjct 28 RAAVLQLLLDQPEAPRLAALAQASGLHPNTVREHLEALVADGWVRRVRSEP-QGR-GRPA 85
Query 75 LMFRAVRRTDSTGTRRYRLLAEILASGLAAERDS-RAMALSAGRAWGRQLEAPPA--GAD 131
+++V + G Y LA LA+ +A+ + A AG WGR L A
Sbjct 86 WRYQSV---EERGRDEYAGLATALAASIASTSPAPTETARFAGEHWGRDLAAERDRRPET 142
Query 132 TEETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGAL 191
E+ D +V +LD+LGF PE A V L CP LE A GVVC VH G++ GAL
Sbjct 143 PEDARDEVVTMLDELGFEPEADAERD-DVVRLTRCPLLEAAHRYPGVVCEVHRGLVSGAL 201
Query 192 QTWGAPVTVDRLDAFVEPDLCLAHFTP 218
T+GA L F EP CL P
Sbjct 202 ATYGADPEGTDLIPFAEPGACLLMVPP 228
>gi|295129622|ref|YP_003580285.1| transcriptional regulator, ArsR family [Propionibacterium acnes
SK137]
gi|291376879|gb|ADE00734.1| transcriptional regulator, ArsR family [Propionibacterium acnes
SK137]
gi|313764919|gb|EFS36283.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL013PA1]
30 more sequence titles
gi|313771237|gb|EFS37203.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL074PA1]
gi|313811870|gb|EFS49584.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL083PA1]
gi|313815519|gb|EFS53233.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL059PA1]
gi|313828859|gb|EFS66573.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL063PA2]
gi|313832059|gb|EFS69773.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL007PA1]
gi|313832866|gb|EFS70580.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL056PA1]
gi|313839724|gb|EFS77438.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL086PA1]
gi|314916316|gb|EFS80147.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL005PA4]
gi|314917312|gb|EFS81143.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL050PA1]
gi|314921918|gb|EFS85749.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL050PA3]
gi|314930817|gb|EFS94648.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL067PA1]
gi|314955257|gb|EFS99662.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL027PA1]
gi|314959259|gb|EFT03361.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL002PA1]
gi|314969289|gb|EFT13387.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL037PA1]
gi|314975299|gb|EFT19394.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL053PA1]
gi|314977714|gb|EFT21809.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL045PA1]
gi|314985311|gb|EFT29403.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL005PA1]
gi|315097060|gb|EFT69036.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL038PA1]
gi|315099668|gb|EFT71644.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL059PA2]
gi|315102100|gb|EFT74076.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL046PA1]
gi|315110029|gb|EFT82005.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL030PA2]
gi|327332601|gb|EGE74336.1| putative regulatory protein [Propionibacterium acnes HL096PA2]
gi|327446619|gb|EGE93273.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL043PA2]
gi|327448937|gb|EGE95591.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL043PA1]
gi|327454351|gb|EGF01006.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL087PA3]
gi|327456417|gb|EGF03072.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL083PA2]
gi|328756110|gb|EGF69726.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL087PA1]
gi|328758489|gb|EGF72105.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL025PA2]
gi|328759685|gb|EGF73282.1| putative regulatory protein [Propionibacterium acnes HL099PA1]
gi|340772048|gb|EGR94561.1| transcriptional regulator, ArsR family [Propionibacterium acnes
SK182]
Length=193
Score = 105 bits (261), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/168 (40%), Positives = 87/168 (52%), Gaps = 22/168 (13%)
Query 34 AAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRL 93
A +A LG+HP+T RFHLD LV +VE R GRP +F V G R YRL
Sbjct 37 AELASDLGIHPSTARFHLDRLVEQRRVEATRRHRATRGRPHTVFTLV---SDEGPRAYRL 93
Query 94 LAEILASGLAAERDSRAMALSAGRAWGRQLEAPPAGADTEETIDHLVAVLDDLGFAPERR 153
LA++L +A + AMA+ G+ WGR L+AVLDD+GF+P
Sbjct 94 LAQMLVDEVAISNNPTAMAMRIGQRWGRHRRGD------------LIAVLDDMGFSPA-- 139
Query 154 ASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGAPVTVD 201
A G + LRHCPFL+LA VVC +H G++ G G T+D
Sbjct 140 AEEG--GIVLRHCPFLDLARDHPQVVCSLHCGVVEGVT---GQAATID 182
>gi|282853138|ref|ZP_06262475.1| transcriptional regulator, ArsR family [Propionibacterium acnes
J139]
gi|282582591|gb|EFB87971.1| transcriptional regulator, ArsR family [Propionibacterium acnes
J139]
gi|314922595|gb|EFS86426.1| transcriptional regulator, ArsR family [Propionibacterium acnes
HL001PA1]
6 more sequence titles
Length=193
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/168 (40%), Positives = 88/168 (53%), Gaps = 22/168 (13%)
Query 34 AAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRL 93
A +A LG+HP+T RFHLD LV G+V+ R GRP +F V G R YRL
Sbjct 37 AELASDLGIHPSTARFHLDRLVEQGRVKVARRHRATRGRPHTVFTLV---SDEGPRAYRL 93
Query 94 LAEILASGLAAERDSRAMALSAGRAWGRQLEAPPAGADTEETIDHLVAVLDDLGFAPERR 153
LA++L +A + AMA+ G+ WGR L+AVLDD+GF+P
Sbjct 94 LAQMLVDEVALSDNPTAMAIRIGQRWGRHRRGD------------LIAVLDDMGFSPA-- 139
Query 154 ASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGAPVTVD 201
A G + LRHCPFL+LA VVC +H G++ G G T+D
Sbjct 140 AEEG--GIVLRHCPFLDLARDHPQVVCSLHCGVVEGVT---GQAATID 182
>gi|159038691|ref|YP_001537944.1| transcriptional regulator TrmB [Salinispora arenicola CNS-205]
gi|157917526|gb|ABV98953.1| transcriptional regulator, TrmB [Salinispora arenicola CNS-205]
Length=233
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 74/205 (37%), Positives = 104/205 (51%), Gaps = 8/205 (3%)
Query 17 RRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLM 76
R ++L A+ ++IA ++ + G+HP+T R HLD LV G + + G+PGRP
Sbjct 23 RASILELTRAAAGGLTIAEVSARTGLHPSTARSHLDRLVDAGLLVKARASGGQPGRPAWR 82
Query 77 FRAVRRTDSTGTRRYRLLAEILASGLAAER-DSRAMALSAGRAWGRQLEA--PPAGADTE 133
+R V L A +L R D RA A AG WGR L A PP G
Sbjct 83 YRPVPEEAPAPAPYRALAAALLEHLARQGRGDVRAEAARAGHDWGRHLAAATPPGG---- 138
Query 134 ETIDHLVAVLDDLGFAPE-RRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQ 192
+ +D VAVL LGF PE R ++G ++ L CPFLEL +C +H+G++RGAL+
Sbjct 139 KPVDTAVAVLRGLGFDPELRPTADGHTEIHLYTCPFLELVSRNPDAICGLHVGVVRGALE 198
Query 193 TWGAPVTVDRLDAFVEPDLCLAHFT 217
GAP L+ F P C+ +
Sbjct 199 QAGAPPNDAVLEPFGAPTACVVRLS 223
>gi|327334654|gb|EGE76365.1| putative regulatory protein [Propionibacterium acnes HL097PA1]
Length=193
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/166 (40%), Positives = 86/166 (52%), Gaps = 22/166 (13%)
Query 36 IAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRLLA 95
+A LG+HP+T RFHLD LV +VE R GRP +F V G R YRLLA
Sbjct 39 LASDLGIHPSTARFHLDRLVEQRRVEATRRHRATRGRPHTVFTLV---SDEGPRAYRLLA 95
Query 96 EILASGLAAERDSRAMALSAGRAWGRQLEAPPAGADTEETIDHLVAVLDDLGFAPERRAS 155
++L +A + AMA+ G+ WGR L+AVLDD+GF+P A
Sbjct 96 QMLVDEVAISNNPTAMAMRIGQRWGRHRRGD------------LIAVLDDMGFSPA--AE 141
Query 156 NGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGAPVTVD 201
G + LRHCPFL+LA VVC +H G++ G G T+D
Sbjct 142 EG--GIVLRHCPFLDLARDHPQVVCSLHCGVVEGVT---GQAATID 182
>gi|313835077|gb|EFS72791.1| conserved hypothetical protein [Propionibacterium acnes HL037PA2]
gi|314928193|gb|EFS92024.1| conserved hypothetical protein [Propionibacterium acnes HL044PA1]
gi|314970022|gb|EFT14120.1| conserved hypothetical protein [Propionibacterium acnes HL037PA3]
gi|328905874|gb|EGG25650.1| putative regulatory protein [Propionibacterium humerusii P08]
Length=195
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/168 (37%), Positives = 84/168 (50%), Gaps = 22/168 (13%)
Query 34 AAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRL 93
A +A L +HP+T RFHLD LV G+ E R GRP +F + G R YRL
Sbjct 37 AELASDLRIHPSTARFHLDRLVEQGRAEMTRQHRATRGRPHTVFTLI---SDEGPRAYRL 93
Query 94 LAEILASGLAAERDSRAMALSAGRAWGRQLEAPPAGADTEETIDHLVAVLDDLGFAPERR 153
LA++ +A+ D A A+ G+ WGR L+AVLDD+GF+P
Sbjct 94 LAQMFVEEVASSNDPTATAMRIGQRWGRHRHGD------------LIAVLDDMGFSP--- 138
Query 154 ASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGAPVTVD 201
+ + LRHCPFL+LA VVC +H G++ G G T+D
Sbjct 139 -AADEDGIVLRHCPFLDLARDHPQVVCSLHCGVVEGVT---GQAATID 182
>gi|258653779|ref|YP_003202935.1| transcriptional regulator [Nakamurella multipartita DSM 44233]
gi|258557004|gb|ACV79946.1| putative transcriptional regulator [Nakamurella multipartita
DSM 44233]
Length=250
Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 84/213 (40%), Positives = 105/213 (50%), Gaps = 12/213 (5%)
Query 15 GRRRAVLRALCASRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERV-EPGRGRPGRP 73
G+R AVL L VPM+I +AG+ GVH NT R HL+ L G R + GR R GRP
Sbjct 25 GQRAAVLELLQQQDVPMTITEVAGEFGVHQNTAREHLEALAGRGLAVRAQQTGRSR-GRP 83
Query 74 PLMFRAVRRTDSTGT--RRYRLLAEILASGLA-AERDSRAMALSAGRAWGRQL--EAPPA 128
+ A R Y LA LA+ L+ D A+ AGR WGR+L +AP A
Sbjct 84 AWAYAAAVDNVEPDQRLRDYAGLATALAAHLSLTSNDPVPEAVQAGRVWGRELIGDAPIA 143
Query 129 GADTE--ETIDHLVAVLDDLGFAPERRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGI 186
T + +V +L DLGF P A + V LR CP L+ A+ VVC VHLGI
Sbjct 144 APRTSAAKARRRIVELLRDLGFDPV--ADQSARSVRLRRCPLLDAAKRYPQVVCQVHLGI 201
Query 187 MRGALQTWGAPVTVDRLDAFVEPDLC-LAHFTP 218
+RGA+ G + F EP C L TP
Sbjct 202 VRGAMDVLGGSPERTAITPFAEPGACRLQLLTP 234
>gi|340771973|gb|EGR94487.1| hypothetical protein HMPREF1162_1503 [Propionibacterium acnes
SK182B-JCVI]
Length=193
Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/168 (39%), Positives = 85/168 (51%), Gaps = 22/168 (13%)
Query 34 AAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLMFRAVRRTDSTGTRRYRL 93
A +A LG+HP+T RFHLD+LV G+ R GRP +F V G R YRL
Sbjct 37 AELASDLGIHPSTARFHLDHLVEQGRATMTRRHRATRGRPHTLFILV---SDEGPRAYRL 93
Query 94 LAEILASGLAAERDSRAMALSAGRAWGRQLEAPPAGADTEETIDHLVAVLDDLGFAPERR 153
LA++L + + A A+ G+ WGR+ D LVAVLDD+GF+P
Sbjct 94 LAQMLVEEVVLANNPTATAMRIGQRWGRRRP------------DDLVAVLDDMGFSPTVE 141
Query 154 ASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGAPVTVD 201
+ LRHCPFL+LA VVC +H G++ G G T+D
Sbjct 142 EDG----IELRHCPFLDLARDYPQVVCSLHCGVVEGVT---GQTATID 182
>gi|258653796|ref|YP_003202952.1| transcriptional regulator [Nakamurella multipartita DSM 44233]
gi|258557021|gb|ACV79963.1| putative transcriptional regulator [Nakamurella multipartita
DSM 44233]
Length=242
Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/196 (35%), Positives = 94/196 (48%), Gaps = 5/196 (2%)
Query 27 SRVPMSIAAIAGKLGVHPNTVRFHLDNLVADGQVERVEPGRGRPGRPPLMFRAVRRTDST 86
S +P+ + +A G+H TVRFHLD LV GQV + R PGRP ++ A
Sbjct 32 STIPLDVYQLAEATGLHITTVRFHLDVLVKAGQVSAQKTPRTTPGRPRTVYAAHAEESPP 91
Query 87 GTRRYRLLAEILASGLAAERDSRAMALSAGRAWGRQLEAPPAGADTEETIDH-LVAVLDD 145
R G R A AGR W L T + H +V + +
Sbjct 92 DGYRPLAALLAANLGPTPRT-RRRRAEKAGRDWATSLIPTVDDVATPDEAAHRIVDLFAE 150
Query 146 LGFAPE---RRASNGRQQVGLRHCPFLELAETQAGVVCPVHLGIMRGALQTWGAPVTVDR 202
+ F PE ++ G +++ LR CP+ ++A VVC +HLG++ GAL G P+T R
Sbjct 151 MNFDPELVHPASATGEREIRLRACPYRDVAREHPDVVCAIHLGLLEGALTQLGKPLTTVR 210
Query 203 LDAFVEPDLCLAHFTP 218
L FV+P LCLA+ TP
Sbjct 211 LVPFVKPHLCLAYLTP 226
Lambda K H
0.323 0.138 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 286119069840
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40