BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2624c
Length=272
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609761|ref|NP_217140.1| hypothetical protein Rv2624c [Mycob... 544 6e-153
gi|340627644|ref|YP_004746096.1| hypothetical protein MCAN_26691... 538 3e-151
gi|254232738|ref|ZP_04926065.1| conserved hypothetical protein [... 528 4e-148
gi|289448276|ref|ZP_06438020.1| conserved hypothetical protein [... 520 8e-146
gi|289570795|ref|ZP_06451022.1| conserved hypothetical protein [... 471 5e-131
gi|289758755|ref|ZP_06518133.1| conserved hypothetical protein [... 421 4e-116
gi|240170640|ref|ZP_04749299.1| hypothetical protein MkanA1_1510... 417 1e-114
gi|183982090|ref|YP_001850381.1| hypothetical protein MMAR_2076 ... 407 9e-112
gi|296169076|ref|ZP_06850736.1| universal stress protein [Mycoba... 386 2e-105
gi|126433721|ref|YP_001069412.1| UspA domain-containing protein ... 236 3e-60
gi|108798060|ref|YP_638257.1| hypothetical protein Mmcs_1087 [My... 234 8e-60
gi|120402398|ref|YP_952227.1| UspA domain-containing protein [My... 222 4e-56
gi|315445920|ref|YP_004078799.1| universal stress protein UspA-l... 216 2e-54
gi|145225567|ref|YP_001136245.1| UspA domain-containing protein ... 205 8e-51
gi|183983461|ref|YP_001851752.1| hypothetical protein MMAR_3478 ... 196 3e-48
gi|296169099|ref|ZP_06850758.1| universal stress protein [Mycoba... 196 3e-48
gi|240171512|ref|ZP_04750171.1| hypothetical protein MkanA1_1951... 194 1e-47
gi|118469913|ref|YP_888228.1| universal stress protein family pr... 193 3e-47
gi|296169092|ref|ZP_06850751.1| universal stress protein [Mycoba... 170 2e-40
gi|183983464|ref|YP_001851755.1| hypothetical protein MMAR_3481 ... 167 2e-39
gi|145224428|ref|YP_001135106.1| UspA domain-containing protein ... 165 6e-39
gi|296169093|ref|ZP_06850752.1| universal stress protein [Mycoba... 163 2e-38
gi|240171515|ref|ZP_04750174.1| hypothetical protein MkanA1_1953... 163 3e-38
gi|120402393|ref|YP_952222.1| UspA domain-containing protein [My... 159 3e-37
gi|315444761|ref|YP_004077640.1| universal stress protein UspA-l... 159 4e-37
gi|120403537|ref|YP_953366.1| UspA domain-containing protein [My... 157 1e-36
gi|108798077|ref|YP_638274.1| hypothetical protein Mmcs_1105 [My... 156 3e-36
gi|126433737|ref|YP_001069428.1| UspA domain-containing protein ... 156 4e-36
gi|169630983|ref|YP_001704632.1| hypothetical protein MAB_3904 [... 150 2e-34
gi|108801091|ref|YP_641288.1| hypothetical protein Mmcs_4127 [My... 140 2e-31
gi|126436929|ref|YP_001072620.1| UspA domain-containing protein ... 139 3e-31
gi|183981530|ref|YP_001849821.1| hypothetical protein MMAR_1515 ... 139 6e-31
gi|118617915|ref|YP_906247.1| hypothetical protein MUL_2424 [Myc... 139 7e-31
gi|340627039|ref|YP_004745491.1| hypothetical protein MCAN_20511... 138 1e-30
gi|15609165|ref|NP_216544.1| hypothetical protein Rv2028c [Mycob... 136 3e-30
gi|240168619|ref|ZP_04747278.1| hypothetical protein MkanA1_0486... 131 1e-28
gi|145225572|ref|YP_001136250.1| UspA domain-containing protein ... 128 1e-27
gi|315445925|ref|YP_004078804.1| universal stress family protein... 126 4e-27
gi|118469548|ref|YP_889491.1| universal stress protein family pr... 126 4e-27
gi|15610270|ref|NP_217650.1| hypothetical protein Rv3134c [Mycob... 125 5e-27
gi|296169213|ref|ZP_06850866.1| universal stress protein [Mycoba... 124 2e-26
gi|312141769|ref|YP_004009105.1| universal stress family protein... 113 3e-23
gi|325672969|ref|ZP_08152663.1| universal stress protein [Rhodoc... 112 4e-23
gi|336459367|gb|EGO38310.1| universal stress family protein [Myc... 112 4e-23
gi|254776433|ref|ZP_05217949.1| hypothetical protein MaviaA2_174... 112 9e-23
gi|41409277|ref|NP_962113.1| hypothetical protein MAP3179c [Myco... 111 1e-22
gi|108798076|ref|YP_638273.1| hypothetical protein Mmcs_1104 [My... 110 2e-22
gi|120402392|ref|YP_952221.1| UspA domain-containing protein [My... 108 8e-22
gi|342861029|ref|ZP_08717678.1| hypothetical protein MCOL_19197 ... 104 1e-20
gi|254552224|ref|ZP_05142671.1| hypothetical protein Mtube_17513... 103 2e-20
>gi|15609761|ref|NP_217140.1| hypothetical protein Rv2624c [Mycobacterium tuberculosis H37Rv]
gi|15842164|ref|NP_337201.1| universal stress protein [Mycobacterium tuberculosis CDC1551]
gi|31793810|ref|NP_856303.1| hypothetical protein Mb2657c [Mycobacterium bovis AF2122/97]
44 more sequence titles
Length=272
Score = 544 bits (1401), Expect = 6e-153, Method: Compositional matrix adjust.
Identities = 272/272 (100%), Positives = 272/272 (100%), Gaps = 0/272 (0%)
Query 1 MSGRGEPTMKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDL 60
MSGRGEPTMKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDL
Sbjct 1 MSGRGEPTMKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDL 60
Query 61 AHAERSLREAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSI 120
AHAERSLREAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSI
Sbjct 61 AHAERSLREAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSI 120
Query 121 LGSTATELAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAP 180
LGSTATELAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAP
Sbjct 121 LGSTATELAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAP 180
Query 181 ILALGGRPEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVI 240
ILALGGRPEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVI
Sbjct 181 ILALGGRPEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVI 240
Query 241 GGGEAGQLARLVGPSGHPVFRHAECSVLVVRR 272
GGGEAGQLARLVGPSGHPVFRHAECSVLVVRR
Sbjct 241 GGGEAGQLARLVGPSGHPVFRHAECSVLVVRR 272
>gi|340627644|ref|YP_004746096.1| hypothetical protein MCAN_26691 [Mycobacterium canettii CIPT
140010059]
gi|340005834|emb|CCC45000.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=272
Score = 538 bits (1386), Expect = 3e-151, Method: Compositional matrix adjust.
Identities = 270/272 (99%), Positives = 270/272 (99%), Gaps = 0/272 (0%)
Query 1 MSGRGEPTMKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDL 60
MSGRGEPTMK IIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDL
Sbjct 1 MSGRGEPTMKPIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDL 60
Query 61 AHAERSLREAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSI 120
AHAERSLREAQSAVEAAGKLVKIETDIPRGPAGPVLVEASR AEMICVGSVGIGRYASSI
Sbjct 61 AHAERSLREAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRGAEMICVGSVGIGRYASSI 120
Query 121 LGSTATELAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAP 180
LGSTATELAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAP
Sbjct 121 LGSTATELAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAP 180
Query 181 ILALGGRPEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVI 240
ILALGGRPEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVI
Sbjct 181 ILALGGRPEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVI 240
Query 241 GGGEAGQLARLVGPSGHPVFRHAECSVLVVRR 272
GGGEAGQLARLVGPSGHPVFRHAECSVLVVRR
Sbjct 241 GGGEAGQLARLVGPSGHPVFRHAECSVLVVRR 272
>gi|254232738|ref|ZP_04926065.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|308232192|ref|ZP_07415239.2| hypothetical protein TMAG_02433 [Mycobacterium tuberculosis SUMu001]
gi|308369803|ref|ZP_07419140.2| hypothetical protein TMBG_02762 [Mycobacterium tuberculosis SUMu002]
26 more sequence titles
Length=264
Score = 528 bits (1360), Expect = 4e-148, Method: Compositional matrix adjust.
Identities = 264/264 (100%), Positives = 264/264 (100%), Gaps = 0/264 (0%)
Query 9 MKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLR 68
MKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLR
Sbjct 1 MKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLR 60
Query 69 EAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATEL 128
EAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATEL
Sbjct 61 EAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATEL 120
Query 129 AEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRP 188
AEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRP
Sbjct 121 AEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRP 180
Query 189 EELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAGQL 248
EELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAGQL
Sbjct 181 EELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAGQL 240
Query 249 ARLVGPSGHPVFRHAECSVLVVRR 272
ARLVGPSGHPVFRHAECSVLVVRR
Sbjct 241 ARLVGPSGHPVFRHAECSVLVVRR 264
>gi|289448276|ref|ZP_06438020.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
gi|289421234|gb|EFD18435.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length=277
Score = 520 bits (1340), Expect = 8e-146, Method: Compositional matrix adjust.
Identities = 264/277 (96%), Positives = 264/277 (96%), Gaps = 13/277 (4%)
Query 9 MKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLR 68
MKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLR
Sbjct 1 MKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLR 60
Query 69 EAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATEL 128
EAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATEL
Sbjct 61 EAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATEL 120
Query 129 AEKA-------------HCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAK 175
AEKA HCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAK
Sbjct 121 AEKALLGSTATELAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAK 180
Query 176 LRQAPILALGGRPEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERV 235
LRQAPILALGGRPEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERV
Sbjct 181 LRQAPILALGGRPEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERV 240
Query 236 QLAVIGGGEAGQLARLVGPSGHPVFRHAECSVLVVRR 272
QLAVIGGGEAGQLARLVGPSGHPVFRHAECSVLVVRR
Sbjct 241 QLAVIGGGEAGQLARLVGPSGHPVFRHAECSVLVVRR 277
>gi|289570795|ref|ZP_06451022.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289544549|gb|EFD48197.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
Length=235
Score = 471 bits (1212), Expect = 5e-131, Method: Compositional matrix adjust.
Identities = 234/235 (99%), Positives = 235/235 (100%), Gaps = 0/235 (0%)
Query 38 VPLRLVSVIKPTHPSPDDYDRDLAHAERSLREAQSAVEAAGKLVKIETDIPRGPAGPVLV 97
+PLRLVSVIKPTHPSPDDYDRDLAHAERSLREAQSAVEAAGKLVKIETDIPRGPAGPVLV
Sbjct 1 MPLRLVSVIKPTHPSPDDYDRDLAHAERSLREAQSAVEAAGKLVKIETDIPRGPAGPVLV 60
Query 98 EASRDAEMICVGSVGIGRYASSILGSTATELAEKAHCPVAVMRSKVDQPASDINWIVVRM 157
EASRDAEMICVGSVGIGRYASSILGSTATELAEKAHCPVAVMRSKVDQPASDINWIVVRM
Sbjct 61 EASRDAEMICVGSVGIGRYASSILGSTATELAEKAHCPVAVMRSKVDQPASDINWIVVRM 120
Query 158 TDAPDNEAVLEYAAREAKLRQAPILALGGRPEELREIPDGEFERRVQDWHHRHPDVRVYP 217
TDAPDNEAVLEYAAREAKLRQAPILALGGRPEELREIPDGEFERRVQDWHHRHPDVRVYP
Sbjct 121 TDAPDNEAVLEYAAREAKLRQAPILALGGRPEELREIPDGEFERRVQDWHHRHPDVRVYP 180
Query 218 ITTHTGIARFLADHDERVQLAVIGGGEAGQLARLVGPSGHPVFRHAECSVLVVRR 272
ITTHTGIARFLADHDERVQLAVIGGGEAGQLARLVGPSGHPVFRHAECSVLVVRR
Sbjct 181 ITTHTGIARFLADHDERVQLAVIGGGEAGQLARLVGPSGHPVFRHAECSVLVVRR 235
>gi|289758755|ref|ZP_06518133.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|289714319|gb|EFD78331.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
Length=240
Score = 421 bits (1083), Expect = 4e-116, Method: Compositional matrix adjust.
Identities = 212/212 (100%), Positives = 212/212 (100%), Gaps = 0/212 (0%)
Query 9 MKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLR 68
MKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLR
Sbjct 1 MKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLR 60
Query 69 EAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATEL 128
EAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATEL
Sbjct 61 EAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATEL 120
Query 129 AEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRP 188
AEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRP
Sbjct 121 AEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRP 180
Query 189 EELREIPDGEFERRVQDWHHRHPDVRVYPITT 220
EELREIPDGEFERRVQDWHHRHPDVRVYPITT
Sbjct 181 EELREIPDGEFERRVQDWHHRHPDVRVYPITT 212
>gi|240170640|ref|ZP_04749299.1| hypothetical protein MkanA1_15100 [Mycobacterium kansasii ATCC
12478]
Length=264
Score = 417 bits (1071), Expect = 1e-114, Method: Compositional matrix adjust.
Identities = 208/263 (80%), Positives = 226/263 (86%), Gaps = 0/263 (0%)
Query 9 MKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLR 68
MK ++VG+DGS AAITAALWG DEA RAVPLRL+SVIK THPSP+DY+RDL HAE SLR
Sbjct 1 MKPVVVGVDGSPAAITAALWGADEAHGRAVPLRLISVIKTTHPSPEDYERDLRHAETSLR 60
Query 69 EAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATEL 128
AQ AV A GK VK+ETD PRGPAG VLVEASRDAE++CVGS G+ RYA SILGSTATEL
Sbjct 61 AAQVAVAATGKQVKVETDTPRGPAGAVLVEASRDAELVCVGSTGMRRYARSILGSTATEL 120
Query 129 AEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRP 188
AEKAHCPVAV+RS DQP DINWIVVRMTDAPDN+AV+E+AAREA LRQAPILALGGRP
Sbjct 121 AEKAHCPVAVIRSDADQPPLDINWIVVRMTDAPDNDAVVEHAAREAMLRQAPILALGGRP 180
Query 189 EELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAGQL 248
EEL E PDG+FERRV +WH RHP VRVYP+TT GIARFLA+H ERV LAVIG EA QL
Sbjct 181 EELTETPDGDFERRVHEWHQRHPGVRVYPVTTKAGIARFLAEHRERVLLAVIGAAEADQL 240
Query 249 ARLVGPSGHPVFRHAECSVLVVR 271
RLVGPSGHPVFRH ECSVLVVR
Sbjct 241 VRLVGPSGHPVFRHPECSVLVVR 263
>gi|183982090|ref|YP_001850381.1| hypothetical protein MMAR_2076 [Mycobacterium marinum M]
gi|183175416|gb|ACC40526.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=264
Score = 407 bits (1046), Expect = 9e-112, Method: Compositional matrix adjust.
Identities = 202/263 (77%), Positives = 222/263 (85%), Gaps = 0/263 (0%)
Query 9 MKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLR 68
MK +IVGIDGS A ITA LW EA+S VPLRL+SV+K H SP++Y+ DLAHAE SLR
Sbjct 1 MKPVIVGIDGSPAGITAVLWATAEAVSAGVPLRLISVLKTAHSSPEEYEHDLAHAETSLR 60
Query 69 EAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATEL 128
AQSA+EA VK+ETD PRGPAG VLVEASRDAE++CVGSVGIGRYA +ILGSTATEL
Sbjct 61 AAQSAIEATAAPVKVETDTPRGPAGAVLVEASRDAELVCVGSVGIGRYARAILGSTATEL 120
Query 129 AEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRP 188
AEKAHCPVAV+RS DQP DINWIVVR+TDAPDN+AV+EYAA EA+LRQAPILALGGRP
Sbjct 121 AEKAHCPVAVIRSNSDQPPPDINWIVVRVTDAPDNDAVIEYAAHEARLRQAPILALGGRP 180
Query 189 EELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAGQL 248
EEL + DGEFERRVQ W H DV VYPITT GIARFLADHDERVQLAVIG EA Q+
Sbjct 181 EELTDAADGEFERRVQQWGQHHTDVHVYPITTQAGIARFLADHDERVQLAVIGADEADQV 240
Query 249 ARLVGPSGHPVFRHAECSVLVVR 271
ARLVGPSGHP+FRHAECSVLVVR
Sbjct 241 ARLVGPSGHPIFRHAECSVLVVR 263
>gi|296169076|ref|ZP_06850736.1| universal stress protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295896267|gb|EFG75928.1| universal stress protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=263
Score = 386 bits (992), Expect = 2e-105, Method: Compositional matrix adjust.
Identities = 192/263 (74%), Positives = 220/263 (84%), Gaps = 0/263 (0%)
Query 9 MKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLR 68
MK I+VGIDGS AA+ AALWGVDEAISR VPLRL+SV+KP H SP+DY+RD+AHAE+SL
Sbjct 1 MKPILVGIDGSSAAVAAALWGVDEAISRGVPLRLISVVKPAHESPEDYERDVAHAEKSLL 60
Query 69 EAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATEL 128
EA+SAVEA GK V +ET +PRGPAG VL+EAS DAEMICVG VGIGRYA SI+GSTATEL
Sbjct 61 EARSAVEATGKAVTVETTVPRGPAGAVLLEASPDAEMICVGCVGIGRYARSIVGSTATEL 120
Query 129 AEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRP 188
EKA CPVAV+R+ D+P DINWIVVRMTDAP N+AV++ AA EAKLR AP+L LGGRP
Sbjct 121 VEKARCPVAVVRTGSDRPPPDINWIVVRMTDAPGNDAVVKCAAAEAKLRNAPMLVLGGRP 180
Query 189 EELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAGQL 248
EEL E DG FERRV W R+P+VRVYPITT IA +L+ +DERVQLAVIGG EA QL
Sbjct 181 EELTEHADGAFERRVAQWRERYPEVRVYPITTKQAIAGYLSANDERVQLAVIGGDEANQL 240
Query 249 ARLVGPSGHPVFRHAECSVLVVR 271
A+LVGP GHP+FRH +CSVLVVR
Sbjct 241 AQLVGPQGHPLFRHPDCSVLVVR 263
>gi|126433721|ref|YP_001069412.1| UspA domain-containing protein [Mycobacterium sp. JLS]
gi|126233521|gb|ABN96921.1| UspA domain protein [Mycobacterium sp. JLS]
Length=279
Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 136/265 (52%), Positives = 181/265 (69%), Gaps = 13/265 (4%)
Query 9 MKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLR 68
+++VGIDGS AAI AA W V+EA+SR+VPL L+ V+ HPS ++Y R+L HA+ SLR
Sbjct 7 FSSVLVGIDGSDAAIGAATWAVEEAVSRSVPLVLIGVMPSIHPSAEEYQRELHHADVSLR 66
Query 69 EAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATEL 128
A++AVEA G+ VK++TDI G VL+ SRDAE++CVGSVGIGRY SILGSTAT+L
Sbjct 67 AARAAVEATGRPVKVDTDIATGQPAAVLIARSRDAELVCVGSVGIGRYERSILGSTATDL 126
Query 129 AEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRP 188
AE+AHCPVAV+R SDI+WIV PD+EAV+E A REA+LR+ P+L LG +P
Sbjct 127 AEQAHCPVAVIRPSHSGGPSDIHWIVAATNGTPDDEAVIEGAMREARLRRLPVLLLGRQP 186
Query 189 EELREIPDG--EFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAG 246
DG E +R V W R DV +YP+ H +A F+ +HDE +++AV+G +AG
Sbjct 187 RH----GDGGDELDRTVALWRKRFDDVHIYPVAFHGDVAHFVREHDEPIEMAVVGAADAG 242
Query 247 QLARLVGPSGHPVFRHAECSVLVVR 271
+LA ++G RH SVLV+R
Sbjct 243 ELAGILG-------RHGRLSVLVIR 260
>gi|108798060|ref|YP_638257.1| hypothetical protein Mmcs_1087 [Mycobacterium sp. MCS]
gi|119867156|ref|YP_937108.1| UspA domain-containing protein [Mycobacterium sp. KMS]
gi|108768479|gb|ABG07201.1| UspA [Mycobacterium sp. MCS]
gi|119693245|gb|ABL90318.1| UspA domain protein [Mycobacterium sp. KMS]
Length=279
Score = 234 bits (598), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 135/265 (51%), Positives = 181/265 (69%), Gaps = 11/265 (4%)
Query 9 MKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLR 68
+++VGIDGS AAI AA W V+EA+SR+VPL L+ V+ HPS ++Y R+L HA+ SLR
Sbjct 7 FSSVLVGIDGSDAAIGAATWAVEEAVSRSVPLVLIGVMPSIHPSAEEYQRELHHADVSLR 66
Query 69 EAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATEL 128
A++AVEA G+ VK++TDI G VL+ SRDAE++CVGSVGIGRY SILGSTAT+L
Sbjct 67 AARAAVEATGRPVKVDTDIATGQPAAVLIARSRDAELVCVGSVGIGRYERSILGSTATDL 126
Query 129 AEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRP 188
AE+AHCPVAV+R SDI+WIV P++EAV+E A REA+LR+ P+L LG +P
Sbjct 127 AEQAHCPVAVIRPSHSGGPSDIHWIVAATNGTPEDEAVIEGAMREARLRRLPVLLLGRQP 186
Query 189 EELREIPDG-EFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAGQ 247
R G E +R V W R DV +YP+ H +A F+ +HDE +++AV+G +AG+
Sbjct 187 ---RHGNGGDELDRTVALWRKRFDDVHIYPVAFHGDVAHFVREHDEPIEMAVVGAADAGE 243
Query 248 LARLVGPSGHPVFRHAECSVLVVRR 272
LA ++G RH SVLV+R
Sbjct 244 LAGILG-------RHGRSSVLVIRN 261
>gi|120402398|ref|YP_952227.1| UspA domain-containing protein [Mycobacterium vanbaalenii PYR-1]
gi|119955216|gb|ABM12221.1| UspA domain protein [Mycobacterium vanbaalenii PYR-1]
Length=266
Score = 222 bits (566), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 130/265 (50%), Positives = 163/265 (62%), Gaps = 6/265 (2%)
Query 8 TMKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSL 67
T +I GIDGS A+ AALW VDEA R P+ LV KPT +Y D+ L
Sbjct 6 TSSPVIAGIDGSATALAAALWAVDEAAGRGAPVHLVYTTKPTDRHAAEYAEDVRRGHECL 65
Query 68 REAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATE 127
EA+SAVEA GK V +ET + GPA L+ S A+M+CVGSVGIGRYA SILGSTA E
Sbjct 66 HEARSAVEATGKPVTVETTVVDGPAAQALISLSEQAQMVCVGSVGIGRYARSILGSTAAE 125
Query 128 LAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALG-G 186
+AE+AHCPVAV+R +WIVV +T+ P N V+E+A REA LR P+LALG G
Sbjct 126 VAERAHCPVAVIRPHPHAGEHGFHWIVVAVTEQPQNAEVVEHALREAALRHVPVLALGDG 185
Query 187 RPEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAG 246
R E+ + ER ++ W R+PDV +YPI + FL HDE V L VIG EAG
Sbjct 186 RTEDSAD----ALERHLRSWRERYPDVHIYPIAGSADVTHFLKKHDEPVMLTVIGSDEAG 241
Query 247 QLARLVGPSGHPVFRHAECSVLVVR 271
++A+++G GH + R S LVVR
Sbjct 242 EVAKIIG-HGHSLLRRGTSSALVVR 265
>gi|315445920|ref|YP_004078799.1| universal stress protein UspA-like protein [Mycobacterium sp.
Spyr1]
gi|315264223|gb|ADU00965.1| universal stress protein UspA-like protein [Mycobacterium sp.
Spyr1]
Length=266
Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 134/265 (51%), Positives = 172/265 (65%), Gaps = 14/265 (5%)
Query 12 IIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLREAQ 71
++ GIDGS AA+ AALW VDEA +R LRLV V KP+ S +Y D+ H +SLREAQ
Sbjct 10 VVAGIDGSAAALGAALWAVDEAAARGTTLRLVYVTKPSDRSAAEYAGDVRHGRQSLREAQ 69
Query 72 SAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATELAEK 131
V++ G+ V +ET+I GP LV S +A+M+CVGSVGIGRYA SILGSTA ++A
Sbjct 70 VLVQSTGESVNVETEIVDGPPAQALVALSENAQMLCVGSVGIGRYARSILGSTAADVAAA 129
Query 132 AHCPVAVMRSK----VDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALG-G 186
AHCPVAV+R + VD P NWI+V + D P N+AV+E+A +EA LR AP+L LG G
Sbjct 130 AHCPVAVIRPESRVGVDTP----NWIIVAVNDRPHNDAVVEHALQEAALRHAPVLVLGDG 185
Query 187 RPEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAG 246
R E+ E+R++ WH R+P V VYPI +A FL HDE V LAV+G EA
Sbjct 186 RTAASAEV----LEQRIRPWHERYPQVHVYPIANRADVAHFLKKHDEPVLLAVLGDDEAD 241
Query 247 QLARLVGPSGHPVFRHAECSVLVVR 271
++A++VG G RH S LVVR
Sbjct 242 EVAQIVG-HGRSALRHGASSALVVR 265
>gi|145225567|ref|YP_001136245.1| UspA domain-containing protein [Mycobacterium gilvum PYR-GCK]
gi|145218053|gb|ABP47457.1| UspA domain protein [Mycobacterium gilvum PYR-GCK]
Length=266
Score = 205 bits (521), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 131/265 (50%), Positives = 167/265 (64%), Gaps = 14/265 (5%)
Query 12 IIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLREAQ 71
++ GIDGS AA+ AALW VDEA +R LRLV V KP+ S +Y D+ H +SLREAQ
Sbjct 10 VVAGIDGSAAALGAALWAVDEAAARGATLRLVYVTKPSDRSAAEYAGDVRHGRQSLREAQ 69
Query 72 SAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATELAEK 131
V++ G+ V +ET+I GP LV S A+M+CVGSVGIGRYA SILGSTA ++A
Sbjct 70 VLVQSTGESVNVETEIVDGPPAQALVALSEHAQMVCVGSVGIGRYARSILGSTAADVAAA 129
Query 132 AHCPVAVMRSK----VDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGR 187
A CPVAV+R + VD P NWI+V + D P N AV+E+A +EA LR A +L LG
Sbjct 130 ARCPVAVIRPESRVGVDTP----NWIIVAVNDRPHNGAVVEHALQEAALRHAAVLVLG-- 183
Query 188 PEELREIPDGE-FERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAG 246
+ R E E+R++ WH R+P V VYPI +A FL HDE V LAV+G EA
Sbjct 184 --DSRTAASAEVLEQRIRPWHERYPQVHVYPIANRADVAHFLRKHDEPVLLAVLGDDEAD 241
Query 247 QLARLVGPSGHPVFRHAECSVLVVR 271
++A++VG G RH S LVVR
Sbjct 242 EVAQIVG-HGRSALRHGASSALVVR 265
>gi|183983461|ref|YP_001851752.1| hypothetical protein MMAR_3478 [Mycobacterium marinum M]
gi|183176787|gb|ACC41897.1| conserved hypothetical membrane protein [Mycobacterium marinum
M]
Length=271
Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 121/264 (46%), Positives = 163/264 (62%), Gaps = 1/264 (0%)
Query 10 KTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDD-YDRDLAHAERSLR 68
+ ++ G+DGS AAI AA W V EA SR +PLRLV + S +D D+ +A+ +L
Sbjct 8 RCVVAGVDGSQAAINAARWAVPEAASRGIPLRLVHAVPERAASTNDEAALDVEYAQAALH 67
Query 69 EAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATEL 128
A +A+ A V++E DI RGPA LV S A M+CVGSVGIGR A +LGSTA +
Sbjct 68 AASAALHAIEVPVEVEVDIVRGPAEAALVSESLTAAMVCVGSVGIGRVARKLLGSTAEAV 127
Query 129 AEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRP 188
++AHCP A++R+ D SD +WI V + D+P N+AVLE+ REA+LR APILA+G
Sbjct 128 TQRAHCPAAIIRTDPDTELSDTSWIAVVVDDSPGNDAVLEHGFREAQLRGAPILAMGVWR 187
Query 189 EELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAGQL 248
L EI + RR+ W R+ DV V P G A FLA +E +QLAV+G +AG +
Sbjct 188 WGLGEIAYEQLHRRLDRWVSRYRDVHVQPAAARHGAADFLAKTEEPIQLAVVGSDDAGDV 247
Query 249 ARLVGPSGHPVFRHAECSVLVVRR 272
AR+VG + + + SVLVVRR
Sbjct 248 ARMVGAVSRRLPQRSGHSVLVVRR 271
>gi|296169099|ref|ZP_06850758.1| universal stress protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295896219|gb|EFG75881.1| universal stress protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=280
Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 126/266 (48%), Positives = 165/266 (63%), Gaps = 3/266 (1%)
Query 8 TMKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPS-PDDYDRDLAHAERS 66
+ + I+VGIDGS AAI AA W EA+SR VPLRL+ I D D+ +A+ S
Sbjct 6 SSQRIVVGIDGSDAAINAAKWAATEAVSRNVPLRLIHAIPERRAGEAGDDSLDVEYAQSS 65
Query 67 LREAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTAT 126
LR A +A++A G VK+E D+ RG + L++ SR A M+CVGSVG G A +LGSTA
Sbjct 66 LRAADAALQATGMPVKVECDVVRGSSEGALIDESRHAAMVCVGSVGTGWVARRVLGSTAD 125
Query 127 ELAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGG 186
+A +AHCPVAV+RS D D ++ V + ++ N+AVLE+ REA+LR+APILALG
Sbjct 126 TVARRAHCPVAVIRSSRDAAEQDGGYVAVTVGESATNDAVLEHGFREARLREAPILALGI 185
Query 187 RPEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAG 246
L EIP + E R+ W RH +V V P G A FL E VQLAV+G +A
Sbjct 186 WRWGLGEIPYRQLEHRLGPWVSRHREVHVQPAAARRGAAEFLTHTQEPVQLAVVGSEDAD 245
Query 247 QLARLVGP-SGHPVFRHAECSVLVVR 271
++AR+VGP + HP H CSVLVVR
Sbjct 246 KVARMVGPITTHP-GGHKGCSVLVVR 270
>gi|240171512|ref|ZP_04750171.1| hypothetical protein MkanA1_19516 [Mycobacterium kansasii ATCC
12478]
Length=269
Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 122/260 (47%), Positives = 158/260 (61%), Gaps = 1/260 (0%)
Query 12 IIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSP-DDYDRDLAHAERSLREA 70
I+VGIDGS AAI AA W + EAISR +PLRL+ I P D D+ +AE +L A
Sbjct 8 IVVGIDGSDAAINAAKWAITEAISRDIPLRLIHAIPRGADVPAGDESLDVEYAEMALHGA 67
Query 71 QSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATELAE 130
+A+ A + VK+ET+I G G L++ SR A M+CVGSVGIGR A +LGSTA +A
Sbjct 68 AAALHAMDEAVKVETEIVHGSPGGTLIDESRSAAMVCVGSVGIGRVARKLLGSTAEAVAR 127
Query 131 KAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRPEE 190
KA CP AV+R+ + D WI V + D+P N+AVLE REA LR APILA+G
Sbjct 128 KARCPTAVIRTGHNDVVPDSAWIAVVVEDSPANDAVLEQGFREAHLRGAPILAMGVWRWG 187
Query 191 LREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAGQLAR 250
L EI + RR+ W ++ D+ V P G+A FL +E +QLAV+G +AG +AR
Sbjct 188 LGEIRYEQLNRRLDRWVGQYRDLHVQPAAARHGVAEFLGRTEEAIQLAVVGSDDAGDVAR 247
Query 251 LVGPSGHPVFRHAECSVLVV 270
+VGP V R SVLVV
Sbjct 248 MVGPVTFHVPRRDGHSVLVV 267
>gi|118469913|ref|YP_888228.1| universal stress protein family protein [Mycobacterium smegmatis
str. MC2 155]
gi|118171200|gb|ABK72096.1| universal stress protein family protein [Mycobacterium smegmatis
str. MC2 155]
Length=263
Score = 193 bits (490), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 126/263 (48%), Positives = 157/263 (60%), Gaps = 14/263 (5%)
Query 12 IIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLREAQ 71
I+VGIDGS A + AA W EA SR VPLRLV K +HPS DDY D+ + +L AQ
Sbjct 10 IVVGIDGSEAGVRAARWAAAEAESRNVPLRLVYATKASHPSADDYYDDVRRGQDALSAAQ 69
Query 72 SAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATELAEK 131
V VK+ET + GP G L++ S A M+CVGSVGIGRYA SILGS A +AE
Sbjct 70 IDVNRRYSEVKVETALVDGPPGRALIDESDRAAMLCVGSVGIGRYAESILGSIALAVAEG 129
Query 132 AHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRPEEL 191
A CPVAV+R++ D A ++WI P +E V+E A EA+LRQAP+L LG R E
Sbjct 130 AACPVAVIRAQEDDSA--VHWIA---AGNPADEHVVESAMAEARLRQAPVLVLGDRRE-- 182
Query 192 REIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAGQLARL 251
F +V+ R+PD+ +YPIT +A FL HDE VQLAVIG E +L R+
Sbjct 183 ----GDAFIYQVKSIQLRNPDLHIYPITDRNDVAGFLRRHDEPVQLAVIGESEVAELPRI 238
Query 252 VGPSGHPVFRHAE---CSVLVVR 271
+GP G +F E SVLV R
Sbjct 239 LGPHGRHMFHLFEGTTSSVLVAR 261
>gi|296169092|ref|ZP_06850751.1| universal stress protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295896212|gb|EFG75874.1| universal stress protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=256
Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 101/265 (39%), Positives = 153/265 (58%), Gaps = 19/265 (7%)
Query 10 KTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVI--KPTHPSP-DDYDRDLAHAERS 66
K ++VG++GS AA+ AA W +DEAI+R +PLRLV VI + H P + ++ E +
Sbjct 7 KAVVVGVNGSRAAVNAAKWAIDEAIARQLPLRLVYVIPRREKHREPATSSEWEVERGEIA 66
Query 67 LREAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTAT 126
L EA+SAV++ K V+IET I G G L++ S DA ++CVG+ G + +LG TAT
Sbjct 67 LAEAESAVQSERKPVEIETAIRSGAPGQALIDQSEDAALVCVGTARRGWASDGLLGPTAT 126
Query 127 ELAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGG 186
+L +AHCPVA++R+ D + + I V + D PDN+ V+ A E + R A +
Sbjct 127 DLVARAHCPVAIIRTDPDGSPTGLGVIAVVLNDEPDNDEVVHQAMEEGRRRHATVR---- 182
Query 187 RPEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAG 246
+ +RR+ W R+PDV V + TG A+ R++LAV+G +A
Sbjct 183 -----------QIDRRLNSWVRRYPDVHVQTVAAGTG-AKPSGKPGGRIELAVVGSADAD 230
Query 247 QLARLVGPSGHPVFRHAECSVLVVR 271
++A L P+ HP+ + +CSVLVVR
Sbjct 231 EMAGLATPNCHPIVGYPDCSVLVVR 255
>gi|183983464|ref|YP_001851755.1| hypothetical protein MMAR_3481 [Mycobacterium marinum M]
gi|183176790|gb|ACC41900.1| conserved hypothetical membrane protein [Mycobacterium marinum
M]
Length=254
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 101/264 (39%), Positives = 152/264 (58%), Gaps = 19/264 (7%)
Query 10 KTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDY--DRDLAHAERSL 67
K+++ GI+GS AAI AA W VDEAISR +PLRLV VI P+ + + D +L AER+L
Sbjct 7 KSVVAGINGSQAAINAAKWAVDEAISRQLPLRLVYVI-PSQQTGSVHAPDWELERAERAL 65
Query 68 REAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATE 127
EA+ AV++ G +++ET + G VL++ S++ +ICVG+ G +LG TA
Sbjct 66 AEAEGAVQSDGHPIEVETVVRAGEPAQVLIDESQETALICVGTARRGPATDGLLGPTAAA 125
Query 128 LAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGR 187
L AHCPVAV+R+ D +++ I V + D DN+ V+ A E + R A +
Sbjct 126 LVRGAHCPVAVIRTNPDGSPTELGVIAVVLNDDADNDEVVHAAMEEGRRRHAVVR----- 180
Query 188 PEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAGQ 247
+ +RR+ W R+PDV V + + TG AR + +H + LAV+G +A +
Sbjct 181 ----------QIDRRLDSWVRRYPDVPVQVVASGTG-ARSVENHSSAIDLAVVGEADADE 229
Query 248 LARLVGPSGHPVFRHAECSVLVVR 271
L L P+ HP+ + +CSVL+VR
Sbjct 230 LPGLATPNCHPILGYPDCSVLLVR 253
>gi|145224428|ref|YP_001135106.1| UspA domain-containing protein [Mycobacterium gilvum PYR-GCK]
gi|145216914|gb|ABP46318.1| UspA domain protein [Mycobacterium gilvum PYR-GCK]
Length=274
Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 103/262 (40%), Positives = 149/262 (57%), Gaps = 6/262 (2%)
Query 11 TIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPS---PDDYDRDLAHAERSL 67
I+VGIDGS AA+ AALW VD+A+ +PLRLV VI + P D R LA AE ++
Sbjct 9 CIVVGIDGSPAAVDAALWAVDQAVDLDIPLRLVYVIDADNEDAVDPHDQARQLATAEMAV 68
Query 68 REAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATE 127
R A +A+E+ + VKIE +I RG L+EA+R A ++C+G+ G+ +GSTA
Sbjct 69 RYALTALESTDQPVKIEVEILRGRPVQTLLEAARSAVLLCLGARGLKHSTQGRIGSTAGA 128
Query 128 LAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGR 187
++ AHCPVAV+R+ D +V+ +TD AVLE EA+ R AP+ L
Sbjct 129 VSTSAHCPVAVVRAHRPHRRPD-RAVVIEITDNAGGGAVLERGLDEARRRGAPVRVLTSA 187
Query 188 PEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAGQ 247
+L G +ERR+ +W R+PD+ + + G+ +LA H + +QL V G G
Sbjct 188 RSQLDVT--GRWERRLAEWRRRYPDLDISAVRARDGLFDYLAAHGDGLQLLVAGRNRPGG 245
Query 248 LARLVGPSGHPVFRHAECSVLV 269
+A LVG G+ R +CS+LV
Sbjct 246 VAPLVGTPGNAALRDTDCSILV 267
>gi|296169093|ref|ZP_06850752.1| universal stress protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295896213|gb|EFG75875.1| universal stress protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=272
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/274 (39%), Positives = 152/274 (56%), Gaps = 23/274 (8%)
Query 10 KTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLRE 69
++I+ G+DGS AAI AALW VDEA+SR VPLRL+ P + A AE ++R
Sbjct 8 QSIVAGVDGSKAAIRAALWAVDEAVSRGVPLRLLHATDP--------EGGEAAAELAVRH 59
Query 70 AQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATELA 129
A +A+ A GK V++ET+I GPA L+ +S A M+CVG+VG+ + +GSTA LA
Sbjct 60 AVTAIRATGKPVRVETEIAPGPAVGSLIRSSASAAMVCVGAVGLRHFQPGRVGSTAAALA 119
Query 130 EKAHCPVAVMR---SKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGG 186
AHCPVA++R + D P +V + +PD+ +L + EA LR A + A+
Sbjct 120 ISAHCPVAIVRGGDGRRDHPEGK---TIVEIDGSPDS-VLLAASVEEALLRDAALQAIVS 175
Query 187 RPEELREIPDGE--------FERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLA 238
R E D E +RR+ W RHP +RV + H G+ + A H V L
Sbjct 176 RRAGPAERGDTEADRRALADLDRRLARWKRRHPRLRVESVAVHAGLLDYPAGHRGPVGLV 235
Query 239 VIGGGEAGQLARLVGPSGHPVFRHAECSVLVVRR 272
++G + +A LVGP+G V + A CS+L+V R
Sbjct 236 IVGAHDRRHVAELVGPAGSSVMQDANCSLLIVNR 269
>gi|240171515|ref|ZP_04750174.1| hypothetical protein MkanA1_19531 [Mycobacterium kansasii ATCC
12478]
Length=256
Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 98/269 (37%), Positives = 146/269 (55%), Gaps = 19/269 (7%)
Query 6 EPTMKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTH---PSPDDYDRDLAH 62
+P K+++V ++GS AA+ AA W ++EA R +PLRLV VI S + + +L
Sbjct 3 QPDPKSVVVAVNGSQAAVNAAKWAIEEARGRQLPLRLVYVIPAADVPGGSAQNSEWELER 62
Query 63 AERSLREAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILG 122
AER+L +A A++ G+ V+ ET I G VL+ S+DA +ICVG+ GR A +LG
Sbjct 63 AERALYQADGAIQGEGRPVETETAIRSGDPAQVLIGESQDAALICVGTARRGRAADGLLG 122
Query 123 STATELAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPIL 182
TA L AHCPVA++R+ D + + I V + D DN+ V+ A E + R A +
Sbjct 123 PTAAALVTGAHCPVAIVRTNPDGSPTKLGVIAVVLNDEADNDEVVHQAMEEGRRRHATVR 182
Query 183 ALGGRPEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGG 242
+ +RR+ W R+PDV V + TG A+ H + LAV+G
Sbjct 183 ---------------QIDRRLNSWVRRYPDVPVQIVAAGTG-AKAAERHGSAIDLAVVGE 226
Query 243 GEAGQLARLVGPSGHPVFRHAECSVLVVR 271
+A QL L P+ HP+ + +CS+LVVR
Sbjct 227 TDAEQLPELATPNCHPILGYPDCSILVVR 255
>gi|120402393|ref|YP_952222.1| UspA domain-containing protein [Mycobacterium vanbaalenii PYR-1]
gi|119955211|gb|ABM12216.1| UspA domain protein [Mycobacterium vanbaalenii PYR-1]
Length=280
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 105/274 (39%), Positives = 144/274 (53%), Gaps = 15/274 (5%)
Query 8 TMKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSL 67
T ++VGIDGS A AA+W +DEA SR +PLRLV + PT + D D DLA A R +
Sbjct 3 TSPAVVVGIDGSRFATAAAIWAIDEAASRDIPLRLVHAVTPTDGAHLDAD-DLARAGRVV 61
Query 68 REAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATE 127
+ A +AVEA GK VK+ET I G A VL SRDA ++CVGS G+ S + TA
Sbjct 62 QSAVAAVEANGKPVKVETQITPGRAAHVLRSQSRDAALLCVGSSGLTHGGSGPVDRTAAA 121
Query 128 LAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGR 187
+A A CPVA++ S S W+VV + D+P E VL EA LR A + +
Sbjct 122 VALTASCPVAIIHSAGTN--SKPGWVVVEVNDSPAGELVLRTGVEEALLRGAALRVVATW 179
Query 188 PEELREIPD------------GEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERV 235
P +I D ++ERR+ W RHP++ V+ + T I +LA H + +
Sbjct 180 PSRYPDIHDDGAVANKNRSVKAQWERRLAPWRLRHPELEVHAVATPGSILNYLARHRDPI 239
Query 236 QLAVIGGGEAGQLARLVGPSGHPVFRHAECSVLV 269
LA++ A +A L+ P G R VL+
Sbjct 240 GLAIVPHERAAGVAELLAPRGRDPLRDGCFDVLI 273
>gi|315444761|ref|YP_004077640.1| universal stress protein UspA-like protein [Mycobacterium sp.
Spyr1]
gi|315263064|gb|ADT99805.1| universal stress protein UspA-like protein [Mycobacterium sp.
Spyr1]
Length=274
Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 105/262 (41%), Positives = 149/262 (57%), Gaps = 6/262 (2%)
Query 11 TIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHP---SPDDYDRDLAHAERSL 67
I+VGIDGS AA+ AALW VD+A+ +PLRLV VI P D R LA AE ++
Sbjct 9 CIVVGIDGSPAAVDAALWAVDQAVDLDIPLRLVYVIDADEEGAVDPHDQARQLATAEMAV 68
Query 68 REAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATE 127
R A +A+E+ + VKIE +I RG L+EA+R A +IC+G+ G+ +GSTA
Sbjct 69 RYALTALESTEQPVKIEVEILRGRPVQTLLEAARSAVLICLGARGLKHSTQGRIGSTAAA 128
Query 128 LAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGR 187
++ AHCPVAV+R+ D +V+ +TD D AVLE EA+ R AP+ L
Sbjct 129 VSATAHCPVAVVRAHRPHRRPD-RAVVIEITDNVDGGAVLERGLDEARRRGAPVRVLTSA 187
Query 188 PEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAGQ 247
+L +ERR+ +W HR+PD+ + + G+ +LA H + +QL V G G
Sbjct 188 RPQLDVT--ARWERRLAEWRHRYPDLDISAVRARDGLFDYLAAHGDGLQLLVTGRNRPGG 245
Query 248 LARLVGPSGHPVFRHAECSVLV 269
+A LVG G+ R +CS+LV
Sbjct 246 VAPLVGTPGNAALRDTDCSILV 267
>gi|120403537|ref|YP_953366.1| UspA domain-containing protein [Mycobacterium vanbaalenii PYR-1]
gi|119956355|gb|ABM13360.1| UspA domain protein [Mycobacterium vanbaalenii PYR-1]
Length=271
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 103/269 (39%), Positives = 151/269 (57%), Gaps = 12/269 (4%)
Query 6 EPTMKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKP-THPSPDDYD--RDLAH 62
EP+ I+VGIDGS A + AALW +++A+ +PLRLV V+ H + D +D R +A
Sbjct 3 EPS-ACIVVGIDGSPAGVDAALWAIEQAVDHDMPLRLVYVVDAGEHGTVDPHDQARSIAT 61
Query 63 AERSLREAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILG 122
AE +LR A +AVE+ + VKIE +I +G L+EA+R A M+C+G+ G+ +G
Sbjct 62 AEVALRYALAAVESVERPVKIEVEILQGRPVQTLLEAARSAAMLCIGARGLKHSTQGRIG 121
Query 123 STATELAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAP-- 180
STA LA A CPVA++RS +P +V+ TD AV++ EAK R+ P
Sbjct 122 STAVALATSALCPVAIVRSH--RPHRRDRAVVIEFTDG----AVMQRGLAEAKRRRVPAR 175
Query 181 ILALGGRPEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVI 240
+L + R +ERR+ +W +PDV + P++ +LA H + VQL V
Sbjct 176 VLIPARTHPDARSHASAAWERRLAEWQRSYPDVEIVPVSERIDTLDYLAAHGDDVQLVVA 235
Query 241 GGGEAGQLARLVGPSGHPVFRHAECSVLV 269
G G +A LVGP G+ R +CS+LV
Sbjct 236 GRNRPGGVAALVGPPGNAALRDTDCSILV 264
>gi|108798077|ref|YP_638274.1| hypothetical protein Mmcs_1105 [Mycobacterium sp. MCS]
gi|119867173|ref|YP_937125.1| UspA domain-containing protein [Mycobacterium sp. KMS]
gi|108768496|gb|ABG07218.1| UspA [Mycobacterium sp. MCS]
gi|119693262|gb|ABL90335.1| UspA domain protein [Mycobacterium sp. KMS]
Length=299
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 104/264 (40%), Positives = 151/264 (58%), Gaps = 6/264 (2%)
Query 12 IIVGIDGSHAAITAALWGVDEAISRAVPLRLV---SVIKPTHPSPDDYDRDLAHAERSLR 68
++VG+DGS AA+ A W VDEA+ R+VPLRLV V S D++ + +AE +LR
Sbjct 38 VVVGVDGSQAALDAVRWAVDEAVGRSVPLRLVHATGVTPRVDQSDDEFRLEREYAETALR 97
Query 69 EAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATEL 128
A +A ++AG+ VK+ET+I G LV S A M+C+GSVGIG A+ +LGSTA +
Sbjct 98 AASAAAQSAGREVKVETEILWGSPDSELVTESHGASMVCIGSVGIGAIANVLLGSTAVTV 157
Query 129 AEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRP 188
+ +A C VAV+R +PA + + V PD++ V+ A EA+LR P++ +G R
Sbjct 158 SMQAQCCVAVLRRGA-RPAPN-GSVAVATDGTPDSDGVVIGALDEARLRGCPVVVVGVRR 215
Query 189 EELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLA-DHDERVQLAVIGGGEAGQ 247
E E +RR R+PDVR + T GI R+L D+ +++ V+G +A
Sbjct 216 WESHAPSYDELDRRTAQLADRYPDVRTKVVATDGGIVRYLTHQRDDDIEMVVVGSADADA 275
Query 248 LARLVGPSGHPVFRHAECSVLVVR 271
+A +VGP R SVLVVR
Sbjct 276 VADMVGPHDTLFGRDKGHSVLVVR 299
>gi|126433737|ref|YP_001069428.1| UspA domain-containing protein [Mycobacterium sp. JLS]
gi|126233537|gb|ABN96937.1| UspA domain protein [Mycobacterium sp. JLS]
Length=299
Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 105/266 (40%), Positives = 152/266 (58%), Gaps = 6/266 (2%)
Query 10 KTIIVGIDGSHAAITAALWGVDEAISRAVPLRLV---SVIKPTHPSPDDYDRDLAHAERS 66
+ ++VG+DGS AA+ A W VDEA+ R+VPLRLV V S D++ + +AE +
Sbjct 36 RPVVVGVDGSQAALDAVRWAVDEAVGRSVPLRLVHATGVTPRVDQSDDEFRLEREYAETA 95
Query 67 LREAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTAT 126
LR A +A ++AG+ VK+ET+I G LV S A M+CVGSVGIG A+ +LGSTA
Sbjct 96 LRAASAAAQSAGREVKLETEILWGSPDSELVTESHGASMVCVGSVGIGAIANVLLGSTAV 155
Query 127 ELAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGG 186
++ +A C VAV+R +PA + + V PD++ V+ A EA+LR P++ +G
Sbjct 156 TVSMQAQCCVAVLRRGA-RPAPN-GSVAVATDGTPDSDGVVIGALDEARLRGCPVVVVGV 213
Query 187 RPEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLA-DHDERVQLAVIGGGEA 245
R E E +RR R+PDVR + T GI R+L D+ +++ V+G +A
Sbjct 214 RRWESHAPSYDELDRRTAQLADRYPDVRTKVVATDGGIVRYLTHQRDDDIEMVVVGSADA 273
Query 246 GQLARLVGPSGHPVFRHAECSVLVVR 271
+A +VGP R SVLVVR
Sbjct 274 DAVADMVGPHDTLFGRDKGHSVLVVR 299
>gi|169630983|ref|YP_001704632.1| hypothetical protein MAB_3904 [Mycobacterium abscessus ATCC 19977]
gi|169242950|emb|CAM63978.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=285
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 105/276 (39%), Positives = 151/276 (55%), Gaps = 20/276 (7%)
Query 12 IIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLREAQ 71
++VGIDGS +A+ AALW VDEA+ R +PLRLV V P P+ D + + A ++R A
Sbjct 11 VLVGIDGSRSAVRAALWAVDEALHRELPLRLVHV-TPQTEFPEFSD-ERSPAGTAVRHAF 68
Query 72 SAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATELAEK 131
+ A K VK+E +I G VL++ASR A M+CVG++GI + +GSTA E+
Sbjct 69 RQIGATHKPVKVEAEIRHGRVADVLLDASRSAVMLCVGAIGISGADTRKVGSTAAEVLRS 128
Query 132 AHCPVAVMRSKVDQPAS--DINWIVVRMTDAPDNEAVLEYAAREAKLRQAPI-LALGGRP 188
CPVAV+R D P+S + +VV + ++ ++ LE AA EA+LR AP+ + L RP
Sbjct 129 VRCPVAVIR---DDPSSLRGTSAVVVEIDESHESVTPLELAAHEARLRAAPLRVLLRHRP 185
Query 189 EEL------------REIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQ 236
L R + ERR+ R+PD+ + + G +L H VQ
Sbjct 186 ISLSGQRVATLTRVDRRVAAVHVERRLAPLRVRYPDLDIRALDPVGGTLDYLERHGHTVQ 245
Query 237 LAVIGGGEAGQLARLVGPSGHPVFRHAECSVLVVRR 272
L V+G G+A + LVGP+G V CSVL+ R
Sbjct 246 LVVVGAGDAAHVQELVGPNGCGVLGRTHCSVLIAER 281
>gi|108801091|ref|YP_641288.1| hypothetical protein Mmcs_4127 [Mycobacterium sp. MCS]
gi|119870232|ref|YP_940184.1| UspA domain-containing protein [Mycobacterium sp. KMS]
gi|108771510|gb|ABG10232.1| UspA [Mycobacterium sp. MCS]
gi|119696321|gb|ABL93394.1| UspA domain protein [Mycobacterium sp. KMS]
Length=261
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 98/261 (38%), Positives = 140/261 (54%), Gaps = 10/261 (3%)
Query 12 IIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLREAQ 71
++VGIDGS AA+ AALW VD A+ R PLRL+ I+P R+LA A+ ++R+
Sbjct 7 VVVGIDGSRAALDAALWAVDAAVGRDTPLRLLYAIEPADHDVAAAARELAIADLAVRDVF 66
Query 72 SAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATELAEK 131
+A++A + V+IE +I + A L ASR A ++CVG+VG+ +GSTA LA
Sbjct 67 TAIQATERPVRIEVEIVQDSAVRALASASRSAALVCVGAVGLQDAIPGRIGSTAATLARS 126
Query 132 AHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRPEEL 191
AHCPVA++R D +++ + D D+ AVL +A EA LR+ P+ L E
Sbjct 127 AHCPVALVRHNTD------GYVLAEVEDWSDSGAVLRHAVDEALLRRVPLRVLTPGSESA 180
Query 192 REIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAGQLARL 251
R R + W RHPD+ + +T+ G+ FLA RVQL V+G A
Sbjct 181 R----APAARTLDGWRRRHPDLEIDLLTSDDGVVDFLAGEPGRVQLVVVGAERARGPGEF 236
Query 252 VGPSGHPVFRHAECSVLVVRR 272
P G V R A C++L R
Sbjct 237 TDPRGRSVLREAGCTLLTCHR 257
>gi|126436929|ref|YP_001072620.1| UspA domain-containing protein [Mycobacterium sp. JLS]
gi|126236729|gb|ABO00130.1| UspA domain protein [Mycobacterium sp. JLS]
Length=261
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 98/261 (38%), Positives = 139/261 (54%), Gaps = 10/261 (3%)
Query 12 IIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLREAQ 71
++VGIDGS AA+ AALW VD A+ R PLRL+ I+P R+LA A+ ++R+
Sbjct 7 VVVGIDGSRAALDAALWAVDAAVGRDTPLRLLYAIEPADHDVAAAARELAIADLAVRDVF 66
Query 72 SAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATELAEK 131
+A++A + V+IE +I + A L ASR A ++CVG+VG+ +GSTA LA
Sbjct 67 TAIQATERPVRIEVEIVQDSAVRALASASRSAALVCVGAVGLQDAIPGRIGSTAATLARS 126
Query 132 AHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRPEEL 191
AHCPVA++R D +++ + D D+ AVL +A EA LR+ P+ L E
Sbjct 127 AHCPVALVRHNTD------GYVLAEVEDWSDSGAVLRHAVDEALLRRVPLRVLTPGSESA 180
Query 192 REIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAGQLARL 251
R R + W RHPD+ + T+ G+ FLA RVQL V+G A
Sbjct 181 R----APAARTLDGWRRRHPDLEIDLFTSDDGVVDFLAGEPGRVQLVVVGAERARGPGEF 236
Query 252 VGPSGHPVFRHAECSVLVVRR 272
P G V R A C++L R
Sbjct 237 TDPRGRSVLREAGCTLLTCHR 257
>gi|183981530|ref|YP_001849821.1| hypothetical protein MMAR_1515 [Mycobacterium marinum M]
gi|183174856|gb|ACC39966.1| conserved hypothetical membrane protein [Mycobacterium marinum
M]
Length=264
Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 104/278 (38%), Positives = 144/278 (52%), Gaps = 25/278 (8%)
Query 1 MSGRGEPTMKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDL 60
MS + P I+VGIDGS A+ AA+W VDEA+SR +P+RLV +I P D D
Sbjct 1 MSNQAAPA---IVVGIDGSRASTHAAVWAVDEAVSRDIPVRLVYIIDPAQAPASDRDGRQ 57
Query 61 AHAERSLREAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSI 120
+ A +L + Q AVEA G+ VKIET+I G L+E SR A M+CVGS+G+ +A
Sbjct 58 SAARAALFDVQRAVEATGQPVKIETEILWGRPLTKLLEESRTAVMVCVGSIGL-NHARRG 116
Query 121 LGSTATELAEKAHCPVAVMRSKVDQP-ASDINWIVVRMTDAPDNEAVLEYAAREAKLRQA 179
GS A LA A CPVAV++S A + +V + DN +VL +A EA+LR
Sbjct 117 EGSVAGTLAGSALCPVAVIQSPAGAAGAPKVGEVVAEV----DNGSVLRHAFEEARLRNV 172
Query 180 PILALGGR------PEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDE 233
P+ A+ R E+ + + RR+ W +PDVRV R++A + +
Sbjct 173 PLRAISSRVATGHGSEDGNRLATAQLTRRLTRWTRLYPDVRVESAIIAGHACRYMAANAK 232
Query 234 RVQLAVIGGGEAGQLARLVGPSGHPVFRHAECSVLVVR 271
+L V A Q+ + G A CSVL VR
Sbjct 233 PDELYVT-DSHAAQVCSVYG---------AGCSVLTVR 260
>gi|118617915|ref|YP_906247.1| hypothetical protein MUL_2424 [Mycobacterium ulcerans Agy99]
gi|118570025|gb|ABL04776.1| conserved hypothetical membrane protein [Mycobacterium ulcerans
Agy99]
Length=264
Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 104/278 (38%), Positives = 144/278 (52%), Gaps = 25/278 (8%)
Query 1 MSGRGEPTMKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDL 60
MS + P I+VGIDGS A+ AA+W VDEA+SR +P+RLV +I P D D
Sbjct 1 MSNQAAPA---IVVGIDGSRASTHAAVWAVDEAVSRDIPVRLVYIIDPAQAPAGDRDGRQ 57
Query 61 AHAERSLREAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSI 120
+ A +L + Q AVEA G+ VKIET+I G L+E SR A M+CVGS+G+ +A
Sbjct 58 SSARAALFDVQRAVEATGQPVKIETEILWGRPLTKLLEESRTAVMVCVGSIGLN-HARRG 116
Query 121 LGSTATELAEKAHCPVAVMRSKVDQP-ASDINWIVVRMTDAPDNEAVLEYAAREAKLRQA 179
GS A LA A CPVAV++S A + +V + DN +VL +A EA+LR
Sbjct 117 EGSVAGTLAGSALCPVAVIQSPAGAAGAPKVGEVVAEV----DNGSVLRHAFEEARLRNV 172
Query 180 PILALGGR------PEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDE 233
P+ A+ R E+ + + RR+ W +PDVRV R++A + +
Sbjct 173 PLRAISSRVATDHGSEDGNRLATAQLTRRLTRWTRLYPDVRVESAIIAGHACRYMAANAK 232
Query 234 RVQLAVIGGGEAGQLARLVGPSGHPVFRHAECSVLVVR 271
+L V A Q+ + G A CSVL VR
Sbjct 233 PDELYVT-DSHAAQVCSVYG---------AGCSVLTVR 260
>gi|340627039|ref|YP_004745491.1| hypothetical protein MCAN_20511 [Mycobacterium canettii CIPT
140010059]
gi|340005229|emb|CCC44383.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=279
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 95/266 (36%), Positives = 140/266 (53%), Gaps = 6/266 (2%)
Query 11 TIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHA---ERSL 67
+I+VGIDGS A+ AALW VDEA SR +PLRL+ I+P P + E ++
Sbjct 9 SIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARKLAAAENAV 68
Query 68 REAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATE 127
R A +AVEAA + VK+E +I + L+ AS A ++CVG++G+ + GSTA
Sbjct 69 RYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPERAGSTAAA 128
Query 128 LAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGR 187
LA A CPVA++RS D WIVV + D +L EA+LR +P+ + R
Sbjct 129 LALSAQCPVAIVRSHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDSPVRVVTCR 188
Query 188 PEELREIPD---GEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGE 244
+ + D +R + W R+PDVRV H + +LA V + V+ +
Sbjct 189 QSGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSVHMVVVSASD 248
Query 245 AGQLARLVGPSGHPVFRHAECSVLVV 270
+ +LVG G+ V + A C++LVV
Sbjct 249 QEHVEQLVGAPGNAVLQEAGCTLLVV 274
>gi|15609165|ref|NP_216544.1| hypothetical protein Rv2028c [Mycobacterium tuberculosis H37Rv]
gi|15841515|ref|NP_336552.1| universal stress protein [Mycobacterium tuberculosis CDC1551]
gi|31793210|ref|NP_855703.1| hypothetical protein Mb2053c [Mycobacterium bovis AF2122/97]
75 more sequence titles
Length=279
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 94/266 (36%), Positives = 140/266 (53%), Gaps = 6/266 (2%)
Query 11 TIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHA---ERSL 67
+I+VGIDGS A+ AALW VDEA SR +PLRL+ I+P P + E ++
Sbjct 9 SIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARKLAAAENAV 68
Query 68 REAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATE 127
R A +AVEAA + VK+E +I + L+ AS A ++CVG++G+ + +GSTA
Sbjct 69 RYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPERVGSTAAA 128
Query 128 LAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGR 187
LA A CPVA++R D WIVV + D +L EA+LR +P+ + R
Sbjct 129 LALSAQCPVAIVRPHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDSPVRVVTCR 188
Query 188 PEELREIPD---GEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGE 244
+ + D +R + W R+PDVRV H + +LA V + V+ +
Sbjct 189 QSGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSVHMVVLSASD 248
Query 245 AGQLARLVGPSGHPVFRHAECSVLVV 270
+ +LVG G+ V + A C++LVV
Sbjct 249 QEHVEQLVGAPGNAVLQEAGCTLLVV 274
>gi|240168619|ref|ZP_04747278.1| hypothetical protein MkanA1_04860 [Mycobacterium kansasii ATCC
12478]
Length=266
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 104/277 (38%), Positives = 144/277 (52%), Gaps = 28/277 (10%)
Query 6 EPTMKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPS---PDDYDRDLAH 62
P+ ++VGIDGS AA AALW +DEA+SR +PLRLV VI P PS D + +AH
Sbjct 3 NPSAPAVVVGIDGSKAATQAALWAIDEAVSRDIPLRLVYVIDPLEPSGGGGRDGRQGMAH 62
Query 63 AERSLREAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILG 122
A +L + AVEA G VK+ET++ RG L+E SR A M+CVGS+G+ +A G
Sbjct 63 A--ALFDVCRAVEATGHPVKVETEVLRGRPLTKLMEESRSAVMVCVGSIGLN-HARRGEG 119
Query 123 STATELAEKAHCPVAVMRSKVDQ-PASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPI 181
S A LA A CPVAV++ P ++ +V + +N +VL +A EA+LR +
Sbjct 120 SVAATLAGSALCPVAVIQVPPGGVPVPKVSTVVAEV----NNGSVLRHAFEEARLRGVAL 175
Query 182 LALGGR-PEELREIPDG------EFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDER 234
AL R P+ + DG + RR+ W +PDV+V R++A + +
Sbjct 176 RALSARMPDTAGDTGDGNRLAQAQLSRRLARWTRLYPDVKVESTIIRGHACRYIAANAKP 235
Query 235 VQLAVIGGGEAGQLARLVGPSGHPVFRHAECSVLVVR 271
QL V A Q + A CSVL VR
Sbjct 236 DQLYVT-DSHAAQACNVYS---------AGCSVLTVR 262
>gi|145225572|ref|YP_001136250.1| UspA domain-containing protein [Mycobacterium gilvum PYR-GCK]
gi|145218058|gb|ABP47462.1| UspA domain protein [Mycobacterium gilvum PYR-GCK]
Length=246
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/265 (36%), Positives = 133/265 (51%), Gaps = 31/265 (11%)
Query 10 KTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLRE 69
K ++VG+DGS AA+ A W EA++R V LRLV + P+PDD L
Sbjct 9 KPVVVGVDGSRAAVNAVRWAAAEALAREVCLRLVHAV--ASPAPDDA---------VLDR 57
Query 70 AQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATELA 129
A+ A A+ +++E G GPVLV SRDA MICVGS + + +G TA LA
Sbjct 58 AKIAALASHDSLEVEVVSTVGEPGPVLVRESRDASMICVGSRPVASADAPTIGPTARALA 117
Query 130 EKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRPE 189
A CPVAV+R+ D I V ++D D +A + A E +LR A +
Sbjct 118 AGADCPVAVIRTGRDGLPQTAGAIAVVLSDDDDTDATVHLAMHEGRLRHATVR------- 170
Query 190 ELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHD---ERVQLAVIGGGEAG 246
+ +RR W R+PDV V + TG R A +D + LAV+G +A
Sbjct 171 --------QIDRRTDSWVRRYPDVHVELVAAGTG--RQYARNDLAPNGIGLAVVGRRDAV 220
Query 247 QLARLVGPSGHPVFRHAECSVLVVR 271
+LA + + HP+ + +CS+L+VR
Sbjct 221 ELAEVGRNNSHPILGYPDCSLLLVR 245
>gi|315445925|ref|YP_004078804.1| universal stress family protein [Mycobacterium sp. Spyr1]
gi|315264228|gb|ADU00970.1| universal stress family protein [Mycobacterium sp. Spyr1]
Length=246
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 92/265 (35%), Positives = 132/265 (50%), Gaps = 31/265 (11%)
Query 10 KTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLRE 69
K ++VG+DGS AA+ A W EA++R V LRLV + P+PDD L
Sbjct 9 KPVVVGVDGSRAAVNAVRWAAAEALAREVCLRLVHAV--ASPAPDDA---------VLDR 57
Query 70 AQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATELA 129
A+ A A+ +++E G GPVLV SRDA MICVGS + + +G TA LA
Sbjct 58 AKIAALASHDSLEVEVVSTVGEPGPVLVRESRDASMICVGSRPVASADAPTIGPTARALA 117
Query 130 EKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRPE 189
A CPVAV+R+ D I V ++D D +A + A E +LR A +
Sbjct 118 AGADCPVAVIRTGRDGLPQTAGAIAVVLSDDDDTDATVHLAMHEGRLRHATVR------- 170
Query 190 ELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHD---ERVQLAVIGGGEAG 246
+ +RR W R+PDV V + G R A +D + LAV+G +A
Sbjct 171 --------QIDRRTDSWVRRYPDVHVELVA--AGAGRQYARNDLAPNGIGLAVVGRRDAV 220
Query 247 QLARLVGPSGHPVFRHAECSVLVVR 271
+LA + + HP+ + +CS+L+VR
Sbjct 221 ELAEVGRNNSHPILGYPDCSLLLVR 245
>gi|118469548|ref|YP_889491.1| universal stress protein family protein [Mycobacterium smegmatis
str. MC2 155]
gi|118170835|gb|ABK71731.1| universal stress protein family protein [Mycobacterium smegmatis
str. MC2 155]
Length=280
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 88/277 (32%), Positives = 139/277 (51%), Gaps = 19/277 (6%)
Query 10 KTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPD--DYDRDLAHAERSL 67
+ +IVGIDGS A+ AA+W V EA+SR VPLRL+ + P D + R LA AE ++
Sbjct 5 RPVIVGIDGSQPAVDAAIWAVKEALSRGVPLRLIYAVHPDDNGADHENSARALATAEVAI 64
Query 68 REAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATE 127
R+A AVE+ + V+IE ++ + L+ AS++ ++CVG+ G+ + +GS A+
Sbjct 65 RQACVAVESTEQPVQIELEVVQDKPIEALIAASQNTPLLCVGASGLTQAGRGGIGSVASA 124
Query 128 LAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGG- 186
+ A CPVAV V P I+V P L+ EA+LR AP+ +
Sbjct 125 VLRSAQCPVAV----VATPGKG-RRILVEFDGRPSASTALQTGVDEARLRDAPLSVMTTW 179
Query 187 --RPEELRE---------IPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERV 235
R EL E + + +RR+ + R+P++ + IT H A ++A + + V
Sbjct 180 QHRHRELYEEKVAEERNRLAQSQLDRRMTRYRKRYPELDLELITDHGNTADYVAANPQTV 239
Query 236 QLAVIGGGEAGQLARLVGPSGHPVFRHAECSVLVVRR 272
QL V+G + + P+ A CS+L R
Sbjct 240 QLIVVGAERFNRAGDVTDPAALGALVDAGCSLLTCDR 276
>gi|15610270|ref|NP_217650.1| hypothetical protein Rv3134c [Mycobacterium tuberculosis H37Rv]
gi|15842707|ref|NP_337744.1| universal stress protein [Mycobacterium tuberculosis CDC1551]
gi|31794310|ref|NP_856803.1| hypothetical protein Mb3158c [Mycobacterium bovis AF2122/97]
79 more sequence titles
Length=268
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 98/271 (37%), Positives = 138/271 (51%), Gaps = 23/271 (8%)
Query 10 KTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLRE 69
+ ++VGIDGS AA AALW VDEA++R +PLRLV VI P+ S + A +L +
Sbjct 8 RAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQSAARAALHD 67
Query 70 AQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATELA 129
A VEA G+ VKIET++ G L++ SR A M+CVGSVG+ + GS A LA
Sbjct 68 ASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLD-HVRGRRGSVAATLA 126
Query 130 EKAHCPVAVMRSKVDQPA--SDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILAL--- 184
A CPVAV+ +PA S ++ +V + DN VL +A EA+LR P+ A+
Sbjct 127 GSALCPVAVIHPSPAEPATTSQVSAVVAEV----DNGVVLRHAFEEARLRGVPLRAVAVH 182
Query 185 -GGRPEELRE---IPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVI 240
P+++ + + RR+ W +P+VRV R LA + + QL V
Sbjct 183 AAETPDDVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHLAANAKPGQLFVA 242
Query 241 GGGEAGQLARLVGPSGHPVFRHAECSVLVVR 271
A +L P C+VL VR
Sbjct 243 DSHSAHELCGAYQPG---------CAVLTVR 264
>gi|296169213|ref|ZP_06850866.1| universal stress protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295896111|gb|EFG75778.1| universal stress protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=278
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/231 (39%), Positives = 132/231 (58%), Gaps = 14/231 (6%)
Query 12 IIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTH-PSPDDYDRDLAHAERSLREA 70
++VG+DGS AA AALW +DEA+SR +P+RLV V+ P +P + LA A +L +A
Sbjct 23 VVVGVDGSKAAEQAALWAIDEAVSRDIPMRLVYVVDPRDAATPSACEARLAAARTALADA 82
Query 71 QSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATELAE 130
AV+AAG VK+ETDI G L+E SR A M+C+GS+G+ ++A S AT LA
Sbjct 83 HRAVDAAGAPVKVETDIVCGRPLTKLLEESRSAAMMCIGSIGL-KHARHGATSVATALAR 141
Query 131 KAHCPVAVMRSKVDQPAS-DINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALG-GRP 188
A CPVAV+ + A+ ++ ++ + DN VL +A EA+LR A + AL R
Sbjct 142 SAGCPVAVIHQPARRSAAPKVDSVLAEV----DNGVVLRHAFEEARLRGAGLRALWVCRG 197
Query 189 EELREIPDG------EFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDE 233
E+ R+ +G + RR+ W +PDVR P+ + ++L H E
Sbjct 198 EDQRDADEGTSSARAQLSRRLARWTRLYPDVRAEPVIVRGSVQQYLRAHPE 248
>gi|312141769|ref|YP_004009105.1| universal stress family protein [Rhodococcus equi 103S]
gi|311891108|emb|CBH50427.1| putative universal stress family protein [Rhodococcus equi 103S]
Length=283
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/269 (33%), Positives = 130/269 (49%), Gaps = 9/269 (3%)
Query 12 IIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSP---DDYDRDLAHAERSLR 68
+IVG+DGS AAI A W EA +R VPL+LV VI + P DD + + A +L+
Sbjct 10 VIVGVDGSDAAIHAVRWAAVEAHARKVPLKLVHVIDTENDFPFVADDLEEEEAAGREALK 69
Query 69 EAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATEL 128
A+ A + IE ++ RG V+ S A ++ VGSVG G + +LGSTA L
Sbjct 70 AAREAATIEDYTIDIEVELLRGRVNRAFVDLSEKASLLVVGSVGAGFFERMVLGSTALSL 129
Query 129 AEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDN-EAVLEYAAREAKLRQAPILALGGR 187
A A C VAV+R P + VV D D+ + V+ A +EA +R A + A+ R
Sbjct 130 AHHAKCTVAVVRGADGSPVPPTSGPVVAGVDHSDSADIVVGTAMQEASIRHAEMTAVHAR 189
Query 188 ----PEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGG- 242
+E E G +R + + P V+V + G + L + V+G
Sbjct 190 RRRGTQEADEEARGRIDRLIATLGAKFPSVQVETVIAEAGPTKHLVALSATARSIVVGSR 249
Query 243 GEAGQLARLVGPSGHPVFRHAECSVLVVR 271
G G + L+G + + HA+C V+V R
Sbjct 250 GRGGFESALLGSTCQSLLYHAQCPVIVAR 278
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/65 (48%), Positives = 37/65 (57%), Gaps = 4/65 (6%)
Query 81 VKIETDIPRGPAGPV--LVEASRDAEMICVGSVGIGRYASSILGSTATELAEKAHCPVAV 138
V++ET I AGP LV S A I VGS G G + S++LGST L A CPV V
Sbjct 219 VQVETVI--AEAGPTKHLVALSATARSIVVGSRGRGGFESALLGSTCQSLLYHAQCPVIV 276
Query 139 MRSKV 143
RS+V
Sbjct 277 ARSRV 281
>gi|325672969|ref|ZP_08152663.1| universal stress protein [Rhodococcus equi ATCC 33707]
gi|325556222|gb|EGD25890.1| universal stress protein [Rhodococcus equi ATCC 33707]
Length=274
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 88/269 (33%), Positives = 130/269 (49%), Gaps = 9/269 (3%)
Query 12 IIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSP---DDYDRDLAHAERSLR 68
+IVG+DGS AAI A W EA +R VPL+LV VI + P DD + + A +L+
Sbjct 1 MIVGVDGSDAAIHAVRWAAVEAHARKVPLKLVHVIDTENDFPFVADDLEEEEAAGREALK 60
Query 69 EAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATEL 128
A+ A + IE ++ RG V+ S A ++ VGSVG G + +LGSTA L
Sbjct 61 AAREAATIEDYTIDIEVELLRGRVNRAFVDLSEKASLLVVGSVGAGFFERMVLGSTALSL 120
Query 129 AEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDN-EAVLEYAAREAKLRQAPILALGGR 187
A A C VAV+R P + VV D D+ + V+ A +EA +R A + A+ R
Sbjct 121 AHHAKCTVAVVRGADGSPVPPTSGPVVAGVDHSDSADIVVGTAMQEASIRHAEMTAVHAR 180
Query 188 ----PEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGG- 242
+E E G +R + + P V+V + G + L + V+G
Sbjct 181 RRRGTQEADEEARGRIDRLIATLGAKFPSVQVETVIAEAGPTKHLVALSATARSIVVGSR 240
Query 243 GEAGQLARLVGPSGHPVFRHAECSVLVVR 271
G G + L+G + + HA+C V+V R
Sbjct 241 GRGGFESALLGSTCQSLLYHAQCPVIVAR 269
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/65 (48%), Positives = 37/65 (57%), Gaps = 4/65 (6%)
Query 81 VKIETDIPRGPAGPV--LVEASRDAEMICVGSVGIGRYASSILGSTATELAEKAHCPVAV 138
V++ET I AGP LV S A I VGS G G + S++LGST L A CPV V
Sbjct 210 VQVETVIAE--AGPTKHLVALSATARSIVVGSRGRGGFESALLGSTCQSLLYHAQCPVIV 267
Query 139 MRSKV 143
RS+V
Sbjct 268 ARSRV 272
>gi|336459367|gb|EGO38310.1| universal stress family protein [Mycobacterium avium subsp. paratuberculosis
S397]
Length=252
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 87/224 (39%), Positives = 125/224 (56%), Gaps = 16/224 (7%)
Query 12 IIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDY--DRDLAHAERSLRE 69
I+VG+DGS AA+ AA+W +DEA+ R +PLRLV VI P H +P + D LA A +L +
Sbjct 10 IVVGVDGSRAAMHAAVWAIDEAVGRDIPLRLVYVIDP-HGAPGGHGPDTRLAAARAALDD 68
Query 70 AQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATELA 129
A AV+A + VK+ET+I G L+E SR A M+CVG +G+ +A + AT L
Sbjct 69 AHRAVDAFAQPVKVETEILWGNTAFKLLEQSRSAVMLCVGQIGL-NHACHGGPAIATSLV 127
Query 130 EKAHCPVAVMRSKVDQPASD-INWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRP 188
A CPVAV++ PA+ ++ +V + DN VL +A EA+LR + A+G
Sbjct 128 RSALCPVAVVQQAPSLPAAARVSGVVAEV----DNGTVLRHAFEEARLRGVGLCAVGNPS 183
Query 189 EELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFL-ADH 231
+ E ERR+ W +PDV+ G+ + L ADH
Sbjct 184 ARV------ELERRLARWMRLYPDVQAESAVLTGGVEQHLRADH 221
>gi|254776433|ref|ZP_05217949.1| hypothetical protein MaviaA2_17439 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=257
Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 86/224 (39%), Positives = 125/224 (56%), Gaps = 16/224 (7%)
Query 12 IIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDL--AHAERSLRE 69
I+VG+DGS AA+ AA+W +DEA+ R +PLRLV VI P H +P ++ D A A +L +
Sbjct 15 IVVGVDGSRAAMHAAVWAIDEAVGRDIPLRLVYVIDP-HGAPGGHEPDTRLAAARAALAD 73
Query 70 AQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATELA 129
A AV+A + VK+ET+I G L+E SR A M+CVG +G+ +A + AT L
Sbjct 74 AHRAVDAFAQPVKVETEILWGNTAFQLLEQSRSAVMLCVGQIGL-NHACHGGPAIATSLV 132
Query 130 EKAHCPVAVMRSKVDQPASD-INWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRP 188
A CPVAV++ PA+ ++ +V + DN VL +A EA+LR + A+G
Sbjct 133 RSALCPVAVVQQAPSLPAAARVSGVVAEV----DNGTVLRHAFEEARLRGVGLCAVGNPS 188
Query 189 EELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFL-ADH 231
+ E ERR+ W +PDV+ G+ + L ADH
Sbjct 189 ARV------ELERRLARWMRLYPDVQAESAVLTGGVEQHLRADH 226
>gi|41409277|ref|NP_962113.1| hypothetical protein MAP3179c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118464029|ref|YP_883163.1| hypothetical protein MAV_4010 [Mycobacterium avium 104]
gi|41398097|gb|AAS05727.1| hypothetical protein MAP_3179c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118165316|gb|ABK66213.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=252
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/224 (39%), Positives = 125/224 (56%), Gaps = 16/224 (7%)
Query 12 IIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDY--DRDLAHAERSLRE 69
I+VG+DGS AA+ AA+W +DEA+ R +PLRLV VI P H +P + D LA A +L +
Sbjct 10 IVVGVDGSRAAMHAAVWAIDEAVGRDIPLRLVYVIDP-HGAPGGHGPDTRLAAARAALAD 68
Query 70 AQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATELA 129
A AV+A + VK+ET+I G L+E SR A M+CVG +G+ +A + AT L
Sbjct 69 AHRAVDAFAQPVKVETEILWGNTAFKLLEQSRSAVMLCVGQIGL-NHACHGGPAIATSLV 127
Query 130 EKAHCPVAVMRSKVDQPASD-INWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRP 188
A CPVAV++ PA+ ++ +V + DN VL +A EA+LR + A+G
Sbjct 128 RSALCPVAVVQQAPSLPAAARVSGVVAEV----DNGTVLRHAFEEARLRGVGLCAVGNPS 183
Query 189 EELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFL-ADH 231
+ E ERR+ W +PDV+ G+ + L ADH
Sbjct 184 ARV------ELERRLARWMRLYPDVQAESAVLTGGVEQHLRADH 221
>gi|108798076|ref|YP_638273.1| hypothetical protein Mmcs_1104 [Mycobacterium sp. MCS]
gi|119867172|ref|YP_937124.1| UspA domain-containing protein [Mycobacterium sp. KMS]
gi|126433736|ref|YP_001069427.1| UspA domain-containing protein [Mycobacterium sp. JLS]
gi|108768495|gb|ABG07217.1| UspA [Mycobacterium sp. MCS]
gi|119693261|gb|ABL90334.1| UspA domain protein [Mycobacterium sp. KMS]
gi|126233536|gb|ABN96936.1| UspA domain protein [Mycobacterium sp. JLS]
Length=295
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/289 (32%), Positives = 134/289 (47%), Gaps = 27/289 (9%)
Query 10 KTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTH-------PSPDDYDRDLAH 62
+ I+VG+DGS + A W EA R VPL LV V+ T P D++ R + H
Sbjct 7 QGIVVGVDGSPQGMRAVTWAAREAAGRDVPLTLVHVLPDTEVRMWLDVPPTDEFWRTVEH 66
Query 63 AER-----SLREAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYA 117
R +++ A++AV G L + + G A P LV+ S+DAEM+ VGS G+G
Sbjct 67 QNREIQSEAVKTAEAAVAGTGSLTVRQRSV-SGNAVPTLVDLSKDAEMVVVGSRGLGAIG 125
Query 118 SSILGSTATELAEKAHCPVAVMR-SKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKL 176
ILGS + L AHCPVAV+ + D P D +VV + +P +E A +A
Sbjct 126 QRILGSVSRGLVHHAHCPVAVIHDDEPDAPERDRAPVVVGIDGSPASELATAIAFDQASR 185
Query 177 RQAPILALGGRPE-ELREIPDGEF-----------ERRVQDWHHRHPDVRVYPITTHTGI 224
R+ ++A+ + + P+ E+ R+ W R+PDV V +
Sbjct 186 RKVELIAVHAWSDPTIYAFPNEEWMTFKPQADEVLAERLAGWADRYPDVPVQRVVVRDKA 245
Query 225 ARFLADHDERVQLAVIGG-GEAGQLARLVGPSGHPVFRHAECSVLVVRR 272
L + E QL V+G G G L+G V + A V+V R+
Sbjct 246 VHQLLEQSEHAQLVVVGSHGRGGFAGMLLGSVSSAVAQAARVPVIVARQ 294
>gi|120402392|ref|YP_952221.1| UspA domain-containing protein [Mycobacterium vanbaalenii PYR-1]
gi|119955210|gb|ABM12215.1| UspA domain protein [Mycobacterium vanbaalenii PYR-1]
Length=245
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 86/262 (33%), Positives = 128/262 (49%), Gaps = 30/262 (11%)
Query 12 IIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLREAQ 71
I+VG+DGS AA+ A W EA++ LRLV + P+ D D HAE++ + +
Sbjct 11 IVVGVDGSQAALNAVRWAAAEALALDASLRLVHAVAAAVPTGSDVVLD--HAEKAAKAIR 68
Query 72 SAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSI-LGSTATELAE 130
+++ ++E G G VL+ S A M+C+GS R A +G A LAE
Sbjct 69 TSL-------RVEAAATVGAPGAVLLRESARAAMVCIGS----RPAQGPPIGCIAKVLAE 117
Query 131 KAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRPEE 190
A CPVA++R++ D + V ++D D +AVL A E +LR A +
Sbjct 118 GAGCPVAIIRTRADGAPQTDGVVSVVLSDDDDTDAVLHLAMHEGRLRHATVR-------- 169
Query 191 LREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLAD-HDERVQLAVIGGGEAGQLA 249
+ ++R W R+PDV V + TG D D V LAV+G +A +L
Sbjct 170 -------QIDQRTDSWVRRYPDVHVELVAAGTGRQYHRNDARDTGVGLAVVGRRDAAELV 222
Query 250 RLVGPSGHPVFRHAECSVLVVR 271
L P HP+ + +CSVL+VR
Sbjct 223 ALTVPGCHPILGYPDCSVLLVR 244
>gi|342861029|ref|ZP_08717678.1| hypothetical protein MCOL_19197 [Mycobacterium colombiense CECT
3035]
gi|342131473|gb|EGT84743.1| hypothetical protein MCOL_19197 [Mycobacterium colombiense CECT
3035]
Length=241
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 89/243 (37%), Positives = 127/243 (53%), Gaps = 18/243 (7%)
Query 27 LWGVDEAISRAVPLRLVSVIKPTHPSP-DDYDRDLAHAERSLREAQSAVEAAGKLVKIET 85
+W +DEA+SR +PLRLV VI S D LA A +L +A AV+AAG+ VKIET
Sbjct 1 MWAIDEAVSRDIPLRLVYVIDSHDASGVRAGDTRLAVARAALADAHRAVDAAGEPVKIET 60
Query 86 DIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATELAEKAHCPVAVMRSKVDQ 145
+I G L+EASR A M+C+G +G+ +A + A L A CPVAV++ +
Sbjct 61 EILWGRTVSKLLEASRSAVMVCIGQIGLN-HACHGGPAVAASLVRSALCPVAVIQQSAGR 119
Query 146 P-ASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALG-GRPEELR-EIP-----DG 197
P A I+ +V + DN VL +A EA+LR+A + A+ + +R E P G
Sbjct 120 PTAPRISGVVTEV----DNGTVLRHAFDEARLRRATLRAVSVSKVANVRDETPGKASAQG 175
Query 198 EFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAGQLARLVGPSGH 257
+ +RR+ W +PDV+ P+ G+ R+L H + QL V A L GH
Sbjct 176 QLDRRLARWMRLYPDVQAEPVIVTGGVDRYLRAHHDAGQLLVTDSYRAEALCH----DGH 231
Query 258 PVF 260
V
Sbjct 232 SVL 234
>gi|254552224|ref|ZP_05142671.1| hypothetical protein Mtube_17513 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
Length=333
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/253 (34%), Positives = 124/253 (50%), Gaps = 23/253 (9%)
Query 28 WGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLREAQSAVEAAGKLVKIETDI 87
W +DEA++R +PLRLV VI P+ S + A +L +A VEA G+ VKIET++
Sbjct 91 WNLDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQSAARAALHDASRKVEATGQPVKIETEV 150
Query 88 PRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATELAEKAHCPVAVMRSKVDQPA 147
G L++ SR A M+CVGSVG+ + GS A LA A CPVAV+ +PA
Sbjct 151 LCGRPLTKLMQESRSAAMLCVGSVGLD-HVRGRRGSVAATLAGSALCPVAVIHPSPAEPA 209
Query 148 --SDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILAL----GGRPEELRE---IPDGE 198
S ++ +V + DN VL +A EA+LR P+ A+ P+++ + +
Sbjct 210 TTSQVSAVVAEV----DNGVVLRHAFEEARLRGVPLRAVAVHAAETPDDVEQGSRLAHVH 265
Query 199 FERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAGQLARLVGPSGHP 258
RR+ W +P+VRV R LA + + QL V A +L P
Sbjct 266 LSRRLAHWTRLYPEVRVDRAIAGGSACRHLAANAKPGQLFVADSHSAHELCGAYQPG--- 322
Query 259 VFRHAECSVLVVR 271
C+VL VR
Sbjct 323 ------CAVLTVR 329
Lambda K H
0.318 0.135 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 423010730970
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40