BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2624c

Length=272
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609761|ref|NP_217140.1|  hypothetical protein Rv2624c [Mycob...   544    6e-153
gi|340627644|ref|YP_004746096.1|  hypothetical protein MCAN_26691...   538    3e-151
gi|254232738|ref|ZP_04926065.1|  conserved hypothetical protein [...   528    4e-148
gi|289448276|ref|ZP_06438020.1|  conserved hypothetical protein [...   520    8e-146
gi|289570795|ref|ZP_06451022.1|  conserved hypothetical protein [...   471    5e-131
gi|289758755|ref|ZP_06518133.1|  conserved hypothetical protein [...   421    4e-116
gi|240170640|ref|ZP_04749299.1|  hypothetical protein MkanA1_1510...   417    1e-114
gi|183982090|ref|YP_001850381.1|  hypothetical protein MMAR_2076 ...   407    9e-112
gi|296169076|ref|ZP_06850736.1|  universal stress protein [Mycoba...   386    2e-105
gi|126433721|ref|YP_001069412.1|  UspA domain-containing protein ...   236    3e-60 
gi|108798060|ref|YP_638257.1|  hypothetical protein Mmcs_1087 [My...   234    8e-60 
gi|120402398|ref|YP_952227.1|  UspA domain-containing protein [My...   222    4e-56 
gi|315445920|ref|YP_004078799.1|  universal stress protein UspA-l...   216    2e-54 
gi|145225567|ref|YP_001136245.1|  UspA domain-containing protein ...   205    8e-51 
gi|183983461|ref|YP_001851752.1|  hypothetical protein MMAR_3478 ...   196    3e-48 
gi|296169099|ref|ZP_06850758.1|  universal stress protein [Mycoba...   196    3e-48 
gi|240171512|ref|ZP_04750171.1|  hypothetical protein MkanA1_1951...   194    1e-47 
gi|118469913|ref|YP_888228.1|  universal stress protein family pr...   193    3e-47 
gi|296169092|ref|ZP_06850751.1|  universal stress protein [Mycoba...   170    2e-40 
gi|183983464|ref|YP_001851755.1|  hypothetical protein MMAR_3481 ...   167    2e-39 
gi|145224428|ref|YP_001135106.1|  UspA domain-containing protein ...   165    6e-39 
gi|296169093|ref|ZP_06850752.1|  universal stress protein [Mycoba...   163    2e-38 
gi|240171515|ref|ZP_04750174.1|  hypothetical protein MkanA1_1953...   163    3e-38 
gi|120402393|ref|YP_952222.1|  UspA domain-containing protein [My...   159    3e-37 
gi|315444761|ref|YP_004077640.1|  universal stress protein UspA-l...   159    4e-37 
gi|120403537|ref|YP_953366.1|  UspA domain-containing protein [My...   157    1e-36 
gi|108798077|ref|YP_638274.1|  hypothetical protein Mmcs_1105 [My...   156    3e-36 
gi|126433737|ref|YP_001069428.1|  UspA domain-containing protein ...   156    4e-36 
gi|169630983|ref|YP_001704632.1|  hypothetical protein MAB_3904 [...   150    2e-34 
gi|108801091|ref|YP_641288.1|  hypothetical protein Mmcs_4127 [My...   140    2e-31 
gi|126436929|ref|YP_001072620.1|  UspA domain-containing protein ...   139    3e-31 
gi|183981530|ref|YP_001849821.1|  hypothetical protein MMAR_1515 ...   139    6e-31 
gi|118617915|ref|YP_906247.1|  hypothetical protein MUL_2424 [Myc...   139    7e-31 
gi|340627039|ref|YP_004745491.1|  hypothetical protein MCAN_20511...   138    1e-30 
gi|15609165|ref|NP_216544.1|  hypothetical protein Rv2028c [Mycob...   136    3e-30 
gi|240168619|ref|ZP_04747278.1|  hypothetical protein MkanA1_0486...   131    1e-28 
gi|145225572|ref|YP_001136250.1|  UspA domain-containing protein ...   128    1e-27 
gi|315445925|ref|YP_004078804.1|  universal stress family protein...   126    4e-27 
gi|118469548|ref|YP_889491.1|  universal stress protein family pr...   126    4e-27 
gi|15610270|ref|NP_217650.1|  hypothetical protein Rv3134c [Mycob...   125    5e-27 
gi|296169213|ref|ZP_06850866.1|  universal stress protein [Mycoba...   124    2e-26 
gi|312141769|ref|YP_004009105.1|  universal stress family protein...   113    3e-23 
gi|325672969|ref|ZP_08152663.1|  universal stress protein [Rhodoc...   112    4e-23 
gi|336459367|gb|EGO38310.1|  universal stress family protein [Myc...   112    4e-23 
gi|254776433|ref|ZP_05217949.1|  hypothetical protein MaviaA2_174...   112    9e-23 
gi|41409277|ref|NP_962113.1|  hypothetical protein MAP3179c [Myco...   111    1e-22 
gi|108798076|ref|YP_638273.1|  hypothetical protein Mmcs_1104 [My...   110    2e-22 
gi|120402392|ref|YP_952221.1|  UspA domain-containing protein [My...   108    8e-22 
gi|342861029|ref|ZP_08717678.1|  hypothetical protein MCOL_19197 ...   104    1e-20 
gi|254552224|ref|ZP_05142671.1|  hypothetical protein Mtube_17513...   103    2e-20 


>gi|15609761|ref|NP_217140.1| hypothetical protein Rv2624c [Mycobacterium tuberculosis H37Rv]
 gi|15842164|ref|NP_337201.1| universal stress protein [Mycobacterium tuberculosis CDC1551]
 gi|31793810|ref|NP_856303.1| hypothetical protein Mb2657c [Mycobacterium bovis AF2122/97]
 44 more sequence titles
 Length=272

 Score =  544 bits (1401),  Expect = 6e-153, Method: Compositional matrix adjust.
 Identities = 272/272 (100%), Positives = 272/272 (100%), Gaps = 0/272 (0%)

Query  1    MSGRGEPTMKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDL  60
            MSGRGEPTMKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDL
Sbjct  1    MSGRGEPTMKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDL  60

Query  61   AHAERSLREAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSI  120
            AHAERSLREAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSI
Sbjct  61   AHAERSLREAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSI  120

Query  121  LGSTATELAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAP  180
            LGSTATELAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAP
Sbjct  121  LGSTATELAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAP  180

Query  181  ILALGGRPEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVI  240
            ILALGGRPEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVI
Sbjct  181  ILALGGRPEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVI  240

Query  241  GGGEAGQLARLVGPSGHPVFRHAECSVLVVRR  272
            GGGEAGQLARLVGPSGHPVFRHAECSVLVVRR
Sbjct  241  GGGEAGQLARLVGPSGHPVFRHAECSVLVVRR  272


>gi|340627644|ref|YP_004746096.1| hypothetical protein MCAN_26691 [Mycobacterium canettii CIPT 
140010059]
 gi|340005834|emb|CCC45000.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=272

 Score =  538 bits (1386),  Expect = 3e-151, Method: Compositional matrix adjust.
 Identities = 270/272 (99%), Positives = 270/272 (99%), Gaps = 0/272 (0%)

Query  1    MSGRGEPTMKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDL  60
            MSGRGEPTMK IIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDL
Sbjct  1    MSGRGEPTMKPIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDL  60

Query  61   AHAERSLREAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSI  120
            AHAERSLREAQSAVEAAGKLVKIETDIPRGPAGPVLVEASR AEMICVGSVGIGRYASSI
Sbjct  61   AHAERSLREAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRGAEMICVGSVGIGRYASSI  120

Query  121  LGSTATELAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAP  180
            LGSTATELAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAP
Sbjct  121  LGSTATELAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAP  180

Query  181  ILALGGRPEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVI  240
            ILALGGRPEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVI
Sbjct  181  ILALGGRPEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVI  240

Query  241  GGGEAGQLARLVGPSGHPVFRHAECSVLVVRR  272
            GGGEAGQLARLVGPSGHPVFRHAECSVLVVRR
Sbjct  241  GGGEAGQLARLVGPSGHPVFRHAECSVLVVRR  272


>gi|254232738|ref|ZP_04926065.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|308232192|ref|ZP_07415239.2| hypothetical protein TMAG_02433 [Mycobacterium tuberculosis SUMu001]
 gi|308369803|ref|ZP_07419140.2| hypothetical protein TMBG_02762 [Mycobacterium tuberculosis SUMu002]
 26 more sequence titles
 Length=264

 Score =  528 bits (1360),  Expect = 4e-148, Method: Compositional matrix adjust.
 Identities = 264/264 (100%), Positives = 264/264 (100%), Gaps = 0/264 (0%)

Query  9    MKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLR  68
            MKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLR
Sbjct  1    MKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLR  60

Query  69   EAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATEL  128
            EAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATEL
Sbjct  61   EAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATEL  120

Query  129  AEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRP  188
            AEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRP
Sbjct  121  AEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRP  180

Query  189  EELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAGQL  248
            EELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAGQL
Sbjct  181  EELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAGQL  240

Query  249  ARLVGPSGHPVFRHAECSVLVVRR  272
            ARLVGPSGHPVFRHAECSVLVVRR
Sbjct  241  ARLVGPSGHPVFRHAECSVLVVRR  264


>gi|289448276|ref|ZP_06438020.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289421234|gb|EFD18435.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length=277

 Score =  520 bits (1340),  Expect = 8e-146, Method: Compositional matrix adjust.
 Identities = 264/277 (96%), Positives = 264/277 (96%), Gaps = 13/277 (4%)

Query  9    MKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLR  68
            MKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLR
Sbjct  1    MKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLR  60

Query  69   EAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATEL  128
            EAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATEL
Sbjct  61   EAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATEL  120

Query  129  AEKA-------------HCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAK  175
            AEKA             HCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAK
Sbjct  121  AEKALLGSTATELAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAK  180

Query  176  LRQAPILALGGRPEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERV  235
            LRQAPILALGGRPEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERV
Sbjct  181  LRQAPILALGGRPEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERV  240

Query  236  QLAVIGGGEAGQLARLVGPSGHPVFRHAECSVLVVRR  272
            QLAVIGGGEAGQLARLVGPSGHPVFRHAECSVLVVRR
Sbjct  241  QLAVIGGGEAGQLARLVGPSGHPVFRHAECSVLVVRR  277


>gi|289570795|ref|ZP_06451022.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289544549|gb|EFD48197.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
Length=235

 Score =  471 bits (1212),  Expect = 5e-131, Method: Compositional matrix adjust.
 Identities = 234/235 (99%), Positives = 235/235 (100%), Gaps = 0/235 (0%)

Query  38   VPLRLVSVIKPTHPSPDDYDRDLAHAERSLREAQSAVEAAGKLVKIETDIPRGPAGPVLV  97
            +PLRLVSVIKPTHPSPDDYDRDLAHAERSLREAQSAVEAAGKLVKIETDIPRGPAGPVLV
Sbjct  1    MPLRLVSVIKPTHPSPDDYDRDLAHAERSLREAQSAVEAAGKLVKIETDIPRGPAGPVLV  60

Query  98   EASRDAEMICVGSVGIGRYASSILGSTATELAEKAHCPVAVMRSKVDQPASDINWIVVRM  157
            EASRDAEMICVGSVGIGRYASSILGSTATELAEKAHCPVAVMRSKVDQPASDINWIVVRM
Sbjct  61   EASRDAEMICVGSVGIGRYASSILGSTATELAEKAHCPVAVMRSKVDQPASDINWIVVRM  120

Query  158  TDAPDNEAVLEYAAREAKLRQAPILALGGRPEELREIPDGEFERRVQDWHHRHPDVRVYP  217
            TDAPDNEAVLEYAAREAKLRQAPILALGGRPEELREIPDGEFERRVQDWHHRHPDVRVYP
Sbjct  121  TDAPDNEAVLEYAAREAKLRQAPILALGGRPEELREIPDGEFERRVQDWHHRHPDVRVYP  180

Query  218  ITTHTGIARFLADHDERVQLAVIGGGEAGQLARLVGPSGHPVFRHAECSVLVVRR  272
            ITTHTGIARFLADHDERVQLAVIGGGEAGQLARLVGPSGHPVFRHAECSVLVVRR
Sbjct  181  ITTHTGIARFLADHDERVQLAVIGGGEAGQLARLVGPSGHPVFRHAECSVLVVRR  235


>gi|289758755|ref|ZP_06518133.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289714319|gb|EFD78331.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
Length=240

 Score =  421 bits (1083),  Expect = 4e-116, Method: Compositional matrix adjust.
 Identities = 212/212 (100%), Positives = 212/212 (100%), Gaps = 0/212 (0%)

Query  9    MKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLR  68
            MKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLR
Sbjct  1    MKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLR  60

Query  69   EAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATEL  128
            EAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATEL
Sbjct  61   EAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATEL  120

Query  129  AEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRP  188
            AEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRP
Sbjct  121  AEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRP  180

Query  189  EELREIPDGEFERRVQDWHHRHPDVRVYPITT  220
            EELREIPDGEFERRVQDWHHRHPDVRVYPITT
Sbjct  181  EELREIPDGEFERRVQDWHHRHPDVRVYPITT  212


>gi|240170640|ref|ZP_04749299.1| hypothetical protein MkanA1_15100 [Mycobacterium kansasii ATCC 
12478]
Length=264

 Score =  417 bits (1071),  Expect = 1e-114, Method: Compositional matrix adjust.
 Identities = 208/263 (80%), Positives = 226/263 (86%), Gaps = 0/263 (0%)

Query  9    MKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLR  68
            MK ++VG+DGS AAITAALWG DEA  RAVPLRL+SVIK THPSP+DY+RDL HAE SLR
Sbjct  1    MKPVVVGVDGSPAAITAALWGADEAHGRAVPLRLISVIKTTHPSPEDYERDLRHAETSLR  60

Query  69   EAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATEL  128
             AQ AV A GK VK+ETD PRGPAG VLVEASRDAE++CVGS G+ RYA SILGSTATEL
Sbjct  61   AAQVAVAATGKQVKVETDTPRGPAGAVLVEASRDAELVCVGSTGMRRYARSILGSTATEL  120

Query  129  AEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRP  188
            AEKAHCPVAV+RS  DQP  DINWIVVRMTDAPDN+AV+E+AAREA LRQAPILALGGRP
Sbjct  121  AEKAHCPVAVIRSDADQPPLDINWIVVRMTDAPDNDAVVEHAAREAMLRQAPILALGGRP  180

Query  189  EELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAGQL  248
            EEL E PDG+FERRV +WH RHP VRVYP+TT  GIARFLA+H ERV LAVIG  EA QL
Sbjct  181  EELTETPDGDFERRVHEWHQRHPGVRVYPVTTKAGIARFLAEHRERVLLAVIGAAEADQL  240

Query  249  ARLVGPSGHPVFRHAECSVLVVR  271
             RLVGPSGHPVFRH ECSVLVVR
Sbjct  241  VRLVGPSGHPVFRHPECSVLVVR  263


>gi|183982090|ref|YP_001850381.1| hypothetical protein MMAR_2076 [Mycobacterium marinum M]
 gi|183175416|gb|ACC40526.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=264

 Score =  407 bits (1046),  Expect = 9e-112, Method: Compositional matrix adjust.
 Identities = 202/263 (77%), Positives = 222/263 (85%), Gaps = 0/263 (0%)

Query  9    MKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLR  68
            MK +IVGIDGS A ITA LW   EA+S  VPLRL+SV+K  H SP++Y+ DLAHAE SLR
Sbjct  1    MKPVIVGIDGSPAGITAVLWATAEAVSAGVPLRLISVLKTAHSSPEEYEHDLAHAETSLR  60

Query  69   EAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATEL  128
             AQSA+EA    VK+ETD PRGPAG VLVEASRDAE++CVGSVGIGRYA +ILGSTATEL
Sbjct  61   AAQSAIEATAAPVKVETDTPRGPAGAVLVEASRDAELVCVGSVGIGRYARAILGSTATEL  120

Query  129  AEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRP  188
            AEKAHCPVAV+RS  DQP  DINWIVVR+TDAPDN+AV+EYAA EA+LRQAPILALGGRP
Sbjct  121  AEKAHCPVAVIRSNSDQPPPDINWIVVRVTDAPDNDAVIEYAAHEARLRQAPILALGGRP  180

Query  189  EELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAGQL  248
            EEL +  DGEFERRVQ W   H DV VYPITT  GIARFLADHDERVQLAVIG  EA Q+
Sbjct  181  EELTDAADGEFERRVQQWGQHHTDVHVYPITTQAGIARFLADHDERVQLAVIGADEADQV  240

Query  249  ARLVGPSGHPVFRHAECSVLVVR  271
            ARLVGPSGHP+FRHAECSVLVVR
Sbjct  241  ARLVGPSGHPIFRHAECSVLVVR  263


>gi|296169076|ref|ZP_06850736.1| universal stress protein [Mycobacterium parascrofulaceum ATCC 
BAA-614]
 gi|295896267|gb|EFG75928.1| universal stress protein [Mycobacterium parascrofulaceum ATCC 
BAA-614]
Length=263

 Score =  386 bits (992),  Expect = 2e-105, Method: Compositional matrix adjust.
 Identities = 192/263 (74%), Positives = 220/263 (84%), Gaps = 0/263 (0%)

Query  9    MKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLR  68
            MK I+VGIDGS AA+ AALWGVDEAISR VPLRL+SV+KP H SP+DY+RD+AHAE+SL 
Sbjct  1    MKPILVGIDGSSAAVAAALWGVDEAISRGVPLRLISVVKPAHESPEDYERDVAHAEKSLL  60

Query  69   EAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATEL  128
            EA+SAVEA GK V +ET +PRGPAG VL+EAS DAEMICVG VGIGRYA SI+GSTATEL
Sbjct  61   EARSAVEATGKAVTVETTVPRGPAGAVLLEASPDAEMICVGCVGIGRYARSIVGSTATEL  120

Query  129  AEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRP  188
             EKA CPVAV+R+  D+P  DINWIVVRMTDAP N+AV++ AA EAKLR AP+L LGGRP
Sbjct  121  VEKARCPVAVVRTGSDRPPPDINWIVVRMTDAPGNDAVVKCAAAEAKLRNAPMLVLGGRP  180

Query  189  EELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAGQL  248
            EEL E  DG FERRV  W  R+P+VRVYPITT   IA +L+ +DERVQLAVIGG EA QL
Sbjct  181  EELTEHADGAFERRVAQWRERYPEVRVYPITTKQAIAGYLSANDERVQLAVIGGDEANQL  240

Query  249  ARLVGPSGHPVFRHAECSVLVVR  271
            A+LVGP GHP+FRH +CSVLVVR
Sbjct  241  AQLVGPQGHPLFRHPDCSVLVVR  263


>gi|126433721|ref|YP_001069412.1| UspA domain-containing protein [Mycobacterium sp. JLS]
 gi|126233521|gb|ABN96921.1| UspA domain protein [Mycobacterium sp. JLS]
Length=279

 Score =  236 bits (602),  Expect = 3e-60, Method: Compositional matrix adjust.
 Identities = 136/265 (52%), Positives = 181/265 (69%), Gaps = 13/265 (4%)

Query  9    MKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLR  68
              +++VGIDGS AAI AA W V+EA+SR+VPL L+ V+   HPS ++Y R+L HA+ SLR
Sbjct  7    FSSVLVGIDGSDAAIGAATWAVEEAVSRSVPLVLIGVMPSIHPSAEEYQRELHHADVSLR  66

Query  69   EAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATEL  128
             A++AVEA G+ VK++TDI  G    VL+  SRDAE++CVGSVGIGRY  SILGSTAT+L
Sbjct  67   AARAAVEATGRPVKVDTDIATGQPAAVLIARSRDAELVCVGSVGIGRYERSILGSTATDL  126

Query  129  AEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRP  188
            AE+AHCPVAV+R       SDI+WIV      PD+EAV+E A REA+LR+ P+L LG +P
Sbjct  127  AEQAHCPVAVIRPSHSGGPSDIHWIVAATNGTPDDEAVIEGAMREARLRRLPVLLLGRQP  186

Query  189  EELREIPDG--EFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAG  246
                   DG  E +R V  W  R  DV +YP+  H  +A F+ +HDE +++AV+G  +AG
Sbjct  187  RH----GDGGDELDRTVALWRKRFDDVHIYPVAFHGDVAHFVREHDEPIEMAVVGAADAG  242

Query  247  QLARLVGPSGHPVFRHAECSVLVVR  271
            +LA ++G       RH   SVLV+R
Sbjct  243  ELAGILG-------RHGRLSVLVIR  260


>gi|108798060|ref|YP_638257.1| hypothetical protein Mmcs_1087 [Mycobacterium sp. MCS]
 gi|119867156|ref|YP_937108.1| UspA domain-containing protein [Mycobacterium sp. KMS]
 gi|108768479|gb|ABG07201.1| UspA [Mycobacterium sp. MCS]
 gi|119693245|gb|ABL90318.1| UspA domain protein [Mycobacterium sp. KMS]
Length=279

 Score =  234 bits (598),  Expect = 8e-60, Method: Compositional matrix adjust.
 Identities = 135/265 (51%), Positives = 181/265 (69%), Gaps = 11/265 (4%)

Query  9    MKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLR  68
              +++VGIDGS AAI AA W V+EA+SR+VPL L+ V+   HPS ++Y R+L HA+ SLR
Sbjct  7    FSSVLVGIDGSDAAIGAATWAVEEAVSRSVPLVLIGVMPSIHPSAEEYQRELHHADVSLR  66

Query  69   EAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATEL  128
             A++AVEA G+ VK++TDI  G    VL+  SRDAE++CVGSVGIGRY  SILGSTAT+L
Sbjct  67   AARAAVEATGRPVKVDTDIATGQPAAVLIARSRDAELVCVGSVGIGRYERSILGSTATDL  126

Query  129  AEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRP  188
            AE+AHCPVAV+R       SDI+WIV      P++EAV+E A REA+LR+ P+L LG +P
Sbjct  127  AEQAHCPVAVIRPSHSGGPSDIHWIVAATNGTPEDEAVIEGAMREARLRRLPVLLLGRQP  186

Query  189  EELREIPDG-EFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAGQ  247
               R    G E +R V  W  R  DV +YP+  H  +A F+ +HDE +++AV+G  +AG+
Sbjct  187  ---RHGNGGDELDRTVALWRKRFDDVHIYPVAFHGDVAHFVREHDEPIEMAVVGAADAGE  243

Query  248  LARLVGPSGHPVFRHAECSVLVVRR  272
            LA ++G       RH   SVLV+R 
Sbjct  244  LAGILG-------RHGRSSVLVIRN  261


>gi|120402398|ref|YP_952227.1| UspA domain-containing protein [Mycobacterium vanbaalenii PYR-1]
 gi|119955216|gb|ABM12221.1| UspA domain protein [Mycobacterium vanbaalenii PYR-1]
Length=266

 Score =  222 bits (566),  Expect = 4e-56, Method: Compositional matrix adjust.
 Identities = 130/265 (50%), Positives = 163/265 (62%), Gaps = 6/265 (2%)

Query  8    TMKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSL  67
            T   +I GIDGS  A+ AALW VDEA  R  P+ LV   KPT     +Y  D+      L
Sbjct  6    TSSPVIAGIDGSATALAAALWAVDEAAGRGAPVHLVYTTKPTDRHAAEYAEDVRRGHECL  65

Query  68   REAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATE  127
             EA+SAVEA GK V +ET +  GPA   L+  S  A+M+CVGSVGIGRYA SILGSTA E
Sbjct  66   HEARSAVEATGKPVTVETTVVDGPAAQALISLSEQAQMVCVGSVGIGRYARSILGSTAAE  125

Query  128  LAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALG-G  186
            +AE+AHCPVAV+R          +WIVV +T+ P N  V+E+A REA LR  P+LALG G
Sbjct  126  VAERAHCPVAVIRPHPHAGEHGFHWIVVAVTEQPQNAEVVEHALREAALRHVPVLALGDG  185

Query  187  RPEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAG  246
            R E+  +      ER ++ W  R+PDV +YPI     +  FL  HDE V L VIG  EAG
Sbjct  186  RTEDSAD----ALERHLRSWRERYPDVHIYPIAGSADVTHFLKKHDEPVMLTVIGSDEAG  241

Query  247  QLARLVGPSGHPVFRHAECSVLVVR  271
            ++A+++G  GH + R    S LVVR
Sbjct  242  EVAKIIG-HGHSLLRRGTSSALVVR  265


>gi|315445920|ref|YP_004078799.1| universal stress protein UspA-like protein [Mycobacterium sp. 
Spyr1]
 gi|315264223|gb|ADU00965.1| universal stress protein UspA-like protein [Mycobacterium sp. 
Spyr1]
Length=266

 Score =  216 bits (551),  Expect = 2e-54, Method: Compositional matrix adjust.
 Identities = 134/265 (51%), Positives = 172/265 (65%), Gaps = 14/265 (5%)

Query  12   IIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLREAQ  71
            ++ GIDGS AA+ AALW VDEA +R   LRLV V KP+  S  +Y  D+ H  +SLREAQ
Sbjct  10   VVAGIDGSAAALGAALWAVDEAAARGTTLRLVYVTKPSDRSAAEYAGDVRHGRQSLREAQ  69

Query  72   SAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATELAEK  131
              V++ G+ V +ET+I  GP    LV  S +A+M+CVGSVGIGRYA SILGSTA ++A  
Sbjct  70   VLVQSTGESVNVETEIVDGPPAQALVALSENAQMLCVGSVGIGRYARSILGSTAADVAAA  129

Query  132  AHCPVAVMRSK----VDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALG-G  186
            AHCPVAV+R +    VD P    NWI+V + D P N+AV+E+A +EA LR AP+L LG G
Sbjct  130  AHCPVAVIRPESRVGVDTP----NWIIVAVNDRPHNDAVVEHALQEAALRHAPVLVLGDG  185

Query  187  RPEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAG  246
            R     E+     E+R++ WH R+P V VYPI     +A FL  HDE V LAV+G  EA 
Sbjct  186  RTAASAEV----LEQRIRPWHERYPQVHVYPIANRADVAHFLKKHDEPVLLAVLGDDEAD  241

Query  247  QLARLVGPSGHPVFRHAECSVLVVR  271
            ++A++VG  G    RH   S LVVR
Sbjct  242  EVAQIVG-HGRSALRHGASSALVVR  265


>gi|145225567|ref|YP_001136245.1| UspA domain-containing protein [Mycobacterium gilvum PYR-GCK]
 gi|145218053|gb|ABP47457.1| UspA domain protein [Mycobacterium gilvum PYR-GCK]
Length=266

 Score =  205 bits (521),  Expect = 8e-51, Method: Compositional matrix adjust.
 Identities = 131/265 (50%), Positives = 167/265 (64%), Gaps = 14/265 (5%)

Query  12   IIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLREAQ  71
            ++ GIDGS AA+ AALW VDEA +R   LRLV V KP+  S  +Y  D+ H  +SLREAQ
Sbjct  10   VVAGIDGSAAALGAALWAVDEAAARGATLRLVYVTKPSDRSAAEYAGDVRHGRQSLREAQ  69

Query  72   SAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATELAEK  131
              V++ G+ V +ET+I  GP    LV  S  A+M+CVGSVGIGRYA SILGSTA ++A  
Sbjct  70   VLVQSTGESVNVETEIVDGPPAQALVALSEHAQMVCVGSVGIGRYARSILGSTAADVAAA  129

Query  132  AHCPVAVMRSK----VDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGR  187
            A CPVAV+R +    VD P    NWI+V + D P N AV+E+A +EA LR A +L LG  
Sbjct  130  ARCPVAVIRPESRVGVDTP----NWIIVAVNDRPHNGAVVEHALQEAALRHAAVLVLG--  183

Query  188  PEELREIPDGE-FERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAG  246
              + R     E  E+R++ WH R+P V VYPI     +A FL  HDE V LAV+G  EA 
Sbjct  184  --DSRTAASAEVLEQRIRPWHERYPQVHVYPIANRADVAHFLRKHDEPVLLAVLGDDEAD  241

Query  247  QLARLVGPSGHPVFRHAECSVLVVR  271
            ++A++VG  G    RH   S LVVR
Sbjct  242  EVAQIVG-HGRSALRHGASSALVVR  265


>gi|183983461|ref|YP_001851752.1| hypothetical protein MMAR_3478 [Mycobacterium marinum M]
 gi|183176787|gb|ACC41897.1| conserved hypothetical membrane protein [Mycobacterium marinum 
M]
Length=271

 Score =  196 bits (498),  Expect = 3e-48, Method: Compositional matrix adjust.
 Identities = 121/264 (46%), Positives = 163/264 (62%), Gaps = 1/264 (0%)

Query  10   KTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDD-YDRDLAHAERSLR  68
            + ++ G+DGS AAI AA W V EA SR +PLRLV  +     S +D    D+ +A+ +L 
Sbjct  8    RCVVAGVDGSQAAINAARWAVPEAASRGIPLRLVHAVPERAASTNDEAALDVEYAQAALH  67

Query  69   EAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATEL  128
             A +A+ A    V++E DI RGPA   LV  S  A M+CVGSVGIGR A  +LGSTA  +
Sbjct  68   AASAALHAIEVPVEVEVDIVRGPAEAALVSESLTAAMVCVGSVGIGRVARKLLGSTAEAV  127

Query  129  AEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRP  188
             ++AHCP A++R+  D   SD +WI V + D+P N+AVLE+  REA+LR APILA+G   
Sbjct  128  TQRAHCPAAIIRTDPDTELSDTSWIAVVVDDSPGNDAVLEHGFREAQLRGAPILAMGVWR  187

Query  189  EELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAGQL  248
              L EI   +  RR+  W  R+ DV V P     G A FLA  +E +QLAV+G  +AG +
Sbjct  188  WGLGEIAYEQLHRRLDRWVSRYRDVHVQPAAARHGAADFLAKTEEPIQLAVVGSDDAGDV  247

Query  249  ARLVGPSGHPVFRHAECSVLVVRR  272
            AR+VG     + + +  SVLVVRR
Sbjct  248  ARMVGAVSRRLPQRSGHSVLVVRR  271


>gi|296169099|ref|ZP_06850758.1| universal stress protein [Mycobacterium parascrofulaceum ATCC 
BAA-614]
 gi|295896219|gb|EFG75881.1| universal stress protein [Mycobacterium parascrofulaceum ATCC 
BAA-614]
Length=280

 Score =  196 bits (498),  Expect = 3e-48, Method: Compositional matrix adjust.
 Identities = 126/266 (48%), Positives = 165/266 (63%), Gaps = 3/266 (1%)

Query  8    TMKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPS-PDDYDRDLAHAERS  66
            + + I+VGIDGS AAI AA W   EA+SR VPLRL+  I         D   D+ +A+ S
Sbjct  6    SSQRIVVGIDGSDAAINAAKWAATEAVSRNVPLRLIHAIPERRAGEAGDDSLDVEYAQSS  65

Query  67   LREAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTAT  126
            LR A +A++A G  VK+E D+ RG +   L++ SR A M+CVGSVG G  A  +LGSTA 
Sbjct  66   LRAADAALQATGMPVKVECDVVRGSSEGALIDESRHAAMVCVGSVGTGWVARRVLGSTAD  125

Query  127  ELAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGG  186
             +A +AHCPVAV+RS  D    D  ++ V + ++  N+AVLE+  REA+LR+APILALG 
Sbjct  126  TVARRAHCPVAVIRSSRDAAEQDGGYVAVTVGESATNDAVLEHGFREARLREAPILALGI  185

Query  187  RPEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAG  246
                L EIP  + E R+  W  RH +V V P     G A FL    E VQLAV+G  +A 
Sbjct  186  WRWGLGEIPYRQLEHRLGPWVSRHREVHVQPAAARRGAAEFLTHTQEPVQLAVVGSEDAD  245

Query  247  QLARLVGP-SGHPVFRHAECSVLVVR  271
            ++AR+VGP + HP   H  CSVLVVR
Sbjct  246  KVARMVGPITTHP-GGHKGCSVLVVR  270


>gi|240171512|ref|ZP_04750171.1| hypothetical protein MkanA1_19516 [Mycobacterium kansasii ATCC 
12478]
Length=269

 Score =  194 bits (493),  Expect = 1e-47, Method: Compositional matrix adjust.
 Identities = 122/260 (47%), Positives = 158/260 (61%), Gaps = 1/260 (0%)

Query  12   IIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSP-DDYDRDLAHAERSLREA  70
            I+VGIDGS AAI AA W + EAISR +PLRL+  I      P  D   D+ +AE +L  A
Sbjct  8    IVVGIDGSDAAINAAKWAITEAISRDIPLRLIHAIPRGADVPAGDESLDVEYAEMALHGA  67

Query  71   QSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATELAE  130
             +A+ A  + VK+ET+I  G  G  L++ SR A M+CVGSVGIGR A  +LGSTA  +A 
Sbjct  68   AAALHAMDEAVKVETEIVHGSPGGTLIDESRSAAMVCVGSVGIGRVARKLLGSTAEAVAR  127

Query  131  KAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRPEE  190
            KA CP AV+R+  +    D  WI V + D+P N+AVLE   REA LR APILA+G     
Sbjct  128  KARCPTAVIRTGHNDVVPDSAWIAVVVEDSPANDAVLEQGFREAHLRGAPILAMGVWRWG  187

Query  191  LREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAGQLAR  250
            L EI   +  RR+  W  ++ D+ V P     G+A FL   +E +QLAV+G  +AG +AR
Sbjct  188  LGEIRYEQLNRRLDRWVGQYRDLHVQPAAARHGVAEFLGRTEEAIQLAVVGSDDAGDVAR  247

Query  251  LVGPSGHPVFRHAECSVLVV  270
            +VGP    V R    SVLVV
Sbjct  248  MVGPVTFHVPRRDGHSVLVV  267


>gi|118469913|ref|YP_888228.1| universal stress protein family protein [Mycobacterium smegmatis 
str. MC2 155]
 gi|118171200|gb|ABK72096.1| universal stress protein family protein [Mycobacterium smegmatis 
str. MC2 155]
Length=263

 Score =  193 bits (490),  Expect = 3e-47, Method: Compositional matrix adjust.
 Identities = 126/263 (48%), Positives = 157/263 (60%), Gaps = 14/263 (5%)

Query  12   IIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLREAQ  71
            I+VGIDGS A + AA W   EA SR VPLRLV   K +HPS DDY  D+   + +L  AQ
Sbjct  10   IVVGIDGSEAGVRAARWAAAEAESRNVPLRLVYATKASHPSADDYYDDVRRGQDALSAAQ  69

Query  72   SAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATELAEK  131
              V      VK+ET +  GP G  L++ S  A M+CVGSVGIGRYA SILGS A  +AE 
Sbjct  70   IDVNRRYSEVKVETALVDGPPGRALIDESDRAAMLCVGSVGIGRYAESILGSIALAVAEG  129

Query  132  AHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRPEEL  191
            A CPVAV+R++ D  A  ++WI       P +E V+E A  EA+LRQAP+L LG R E  
Sbjct  130  AACPVAVIRAQEDDSA--VHWIA---AGNPADEHVVESAMAEARLRQAPVLVLGDRRE--  182

Query  192  REIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAGQLARL  251
                   F  +V+    R+PD+ +YPIT    +A FL  HDE VQLAVIG  E  +L R+
Sbjct  183  ----GDAFIYQVKSIQLRNPDLHIYPITDRNDVAGFLRRHDEPVQLAVIGESEVAELPRI  238

Query  252  VGPSGHPVFRHAE---CSVLVVR  271
            +GP G  +F   E    SVLV R
Sbjct  239  LGPHGRHMFHLFEGTTSSVLVAR  261


>gi|296169092|ref|ZP_06850751.1| universal stress protein [Mycobacterium parascrofulaceum ATCC 
BAA-614]
 gi|295896212|gb|EFG75874.1| universal stress protein [Mycobacterium parascrofulaceum ATCC 
BAA-614]
Length=256

 Score =  170 bits (430),  Expect = 2e-40, Method: Compositional matrix adjust.
 Identities = 101/265 (39%), Positives = 153/265 (58%), Gaps = 19/265 (7%)

Query  10   KTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVI--KPTHPSP-DDYDRDLAHAERS  66
            K ++VG++GS AA+ AA W +DEAI+R +PLRLV VI  +  H  P    + ++   E +
Sbjct  7    KAVVVGVNGSRAAVNAAKWAIDEAIARQLPLRLVYVIPRREKHREPATSSEWEVERGEIA  66

Query  67   LREAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTAT  126
            L EA+SAV++  K V+IET I  G  G  L++ S DA ++CVG+   G  +  +LG TAT
Sbjct  67   LAEAESAVQSERKPVEIETAIRSGAPGQALIDQSEDAALVCVGTARRGWASDGLLGPTAT  126

Query  127  ELAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGG  186
            +L  +AHCPVA++R+  D   + +  I V + D PDN+ V+  A  E + R A +     
Sbjct  127  DLVARAHCPVAIIRTDPDGSPTGLGVIAVVLNDEPDNDEVVHQAMEEGRRRHATVR----  182

Query  187  RPEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAG  246
                       + +RR+  W  R+PDV V  +   TG A+       R++LAV+G  +A 
Sbjct  183  -----------QIDRRLNSWVRRYPDVHVQTVAAGTG-AKPSGKPGGRIELAVVGSADAD  230

Query  247  QLARLVGPSGHPVFRHAECSVLVVR  271
            ++A L  P+ HP+  + +CSVLVVR
Sbjct  231  EMAGLATPNCHPIVGYPDCSVLVVR  255


>gi|183983464|ref|YP_001851755.1| hypothetical protein MMAR_3481 [Mycobacterium marinum M]
 gi|183176790|gb|ACC41900.1| conserved hypothetical membrane protein [Mycobacterium marinum 
M]
Length=254

 Score =  167 bits (422),  Expect = 2e-39, Method: Compositional matrix adjust.
 Identities = 101/264 (39%), Positives = 152/264 (58%), Gaps = 19/264 (7%)

Query  10   KTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDY--DRDLAHAERSL  67
            K+++ GI+GS AAI AA W VDEAISR +PLRLV VI P+  +   +  D +L  AER+L
Sbjct  7    KSVVAGINGSQAAINAAKWAVDEAISRQLPLRLVYVI-PSQQTGSVHAPDWELERAERAL  65

Query  68   REAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATE  127
             EA+ AV++ G  +++ET +  G    VL++ S++  +ICVG+   G     +LG TA  
Sbjct  66   AEAEGAVQSDGHPIEVETVVRAGEPAQVLIDESQETALICVGTARRGPATDGLLGPTAAA  125

Query  128  LAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGR  187
            L   AHCPVAV+R+  D   +++  I V + D  DN+ V+  A  E + R A +      
Sbjct  126  LVRGAHCPVAVIRTNPDGSPTELGVIAVVLNDDADNDEVVHAAMEEGRRRHAVVR-----  180

Query  188  PEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAGQ  247
                      + +RR+  W  R+PDV V  + + TG AR + +H   + LAV+G  +A +
Sbjct  181  ----------QIDRRLDSWVRRYPDVPVQVVASGTG-ARSVENHSSAIDLAVVGEADADE  229

Query  248  LARLVGPSGHPVFRHAECSVLVVR  271
            L  L  P+ HP+  + +CSVL+VR
Sbjct  230  LPGLATPNCHPILGYPDCSVLLVR  253


>gi|145224428|ref|YP_001135106.1| UspA domain-containing protein [Mycobacterium gilvum PYR-GCK]
 gi|145216914|gb|ABP46318.1| UspA domain protein [Mycobacterium gilvum PYR-GCK]
Length=274

 Score =  165 bits (418),  Expect = 6e-39, Method: Compositional matrix adjust.
 Identities = 103/262 (40%), Positives = 149/262 (57%), Gaps = 6/262 (2%)

Query  11   TIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPS---PDDYDRDLAHAERSL  67
             I+VGIDGS AA+ AALW VD+A+   +PLRLV VI   +     P D  R LA AE ++
Sbjct  9    CIVVGIDGSPAAVDAALWAVDQAVDLDIPLRLVYVIDADNEDAVDPHDQARQLATAEMAV  68

Query  68   REAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATE  127
            R A +A+E+  + VKIE +I RG     L+EA+R A ++C+G+ G+       +GSTA  
Sbjct  69   RYALTALESTDQPVKIEVEILRGRPVQTLLEAARSAVLLCLGARGLKHSTQGRIGSTAGA  128

Query  128  LAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGR  187
            ++  AHCPVAV+R+       D   +V+ +TD     AVLE    EA+ R AP+  L   
Sbjct  129  VSTSAHCPVAVVRAHRPHRRPD-RAVVIEITDNAGGGAVLERGLDEARRRGAPVRVLTSA  187

Query  188  PEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAGQ  247
              +L     G +ERR+ +W  R+PD+ +  +    G+  +LA H + +QL V G    G 
Sbjct  188  RSQLDVT--GRWERRLAEWRRRYPDLDISAVRARDGLFDYLAAHGDGLQLLVAGRNRPGG  245

Query  248  LARLVGPSGHPVFRHAECSVLV  269
            +A LVG  G+   R  +CS+LV
Sbjct  246  VAPLVGTPGNAALRDTDCSILV  267


>gi|296169093|ref|ZP_06850752.1| universal stress protein [Mycobacterium parascrofulaceum ATCC 
BAA-614]
 gi|295896213|gb|EFG75875.1| universal stress protein [Mycobacterium parascrofulaceum ATCC 
BAA-614]
Length=272

 Score =  163 bits (413),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 106/274 (39%), Positives = 152/274 (56%), Gaps = 23/274 (8%)

Query  10   KTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLRE  69
            ++I+ G+DGS AAI AALW VDEA+SR VPLRL+    P        +   A AE ++R 
Sbjct  8    QSIVAGVDGSKAAIRAALWAVDEAVSRGVPLRLLHATDP--------EGGEAAAELAVRH  59

Query  70   AQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATELA  129
            A +A+ A GK V++ET+I  GPA   L+ +S  A M+CVG+VG+  +    +GSTA  LA
Sbjct  60   AVTAIRATGKPVRVETEIAPGPAVGSLIRSSASAAMVCVGAVGLRHFQPGRVGSTAAALA  119

Query  130  EKAHCPVAVMR---SKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGG  186
              AHCPVA++R    + D P       +V +  +PD+  +L  +  EA LR A + A+  
Sbjct  120  ISAHCPVAIVRGGDGRRDHPEGK---TIVEIDGSPDS-VLLAASVEEALLRDAALQAIVS  175

Query  187  RPEELREIPDGE--------FERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLA  238
            R     E  D E         +RR+  W  RHP +RV  +  H G+  + A H   V L 
Sbjct  176  RRAGPAERGDTEADRRALADLDRRLARWKRRHPRLRVESVAVHAGLLDYPAGHRGPVGLV  235

Query  239  VIGGGEAGQLARLVGPSGHPVFRHAECSVLVVRR  272
            ++G  +   +A LVGP+G  V + A CS+L+V R
Sbjct  236  IVGAHDRRHVAELVGPAGSSVMQDANCSLLIVNR  269


>gi|240171515|ref|ZP_04750174.1| hypothetical protein MkanA1_19531 [Mycobacterium kansasii ATCC 
12478]
Length=256

 Score =  163 bits (412),  Expect = 3e-38, Method: Compositional matrix adjust.
 Identities = 98/269 (37%), Positives = 146/269 (55%), Gaps = 19/269 (7%)

Query  6    EPTMKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTH---PSPDDYDRDLAH  62
            +P  K+++V ++GS AA+ AA W ++EA  R +PLRLV VI        S  + + +L  
Sbjct  3    QPDPKSVVVAVNGSQAAVNAAKWAIEEARGRQLPLRLVYVIPAADVPGGSAQNSEWELER  62

Query  63   AERSLREAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILG  122
            AER+L +A  A++  G+ V+ ET I  G    VL+  S+DA +ICVG+   GR A  +LG
Sbjct  63   AERALYQADGAIQGEGRPVETETAIRSGDPAQVLIGESQDAALICVGTARRGRAADGLLG  122

Query  123  STATELAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPIL  182
             TA  L   AHCPVA++R+  D   + +  I V + D  DN+ V+  A  E + R A + 
Sbjct  123  PTAAALVTGAHCPVAIVRTNPDGSPTKLGVIAVVLNDEADNDEVVHQAMEEGRRRHATVR  182

Query  183  ALGGRPEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGG  242
                           + +RR+  W  R+PDV V  +   TG A+    H   + LAV+G 
Sbjct  183  ---------------QIDRRLNSWVRRYPDVPVQIVAAGTG-AKAAERHGSAIDLAVVGE  226

Query  243  GEAGQLARLVGPSGHPVFRHAECSVLVVR  271
             +A QL  L  P+ HP+  + +CS+LVVR
Sbjct  227  TDAEQLPELATPNCHPILGYPDCSILVVR  255


>gi|120402393|ref|YP_952222.1| UspA domain-containing protein [Mycobacterium vanbaalenii PYR-1]
 gi|119955211|gb|ABM12216.1| UspA domain protein [Mycobacterium vanbaalenii PYR-1]
Length=280

 Score =  159 bits (403),  Expect = 3e-37, Method: Compositional matrix adjust.
 Identities = 105/274 (39%), Positives = 144/274 (53%), Gaps = 15/274 (5%)

Query  8    TMKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSL  67
            T   ++VGIDGS  A  AA+W +DEA SR +PLRLV  + PT  +  D D DLA A R +
Sbjct  3    TSPAVVVGIDGSRFATAAAIWAIDEAASRDIPLRLVHAVTPTDGAHLDAD-DLARAGRVV  61

Query  68   REAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATE  127
            + A +AVEA GK VK+ET I  G A  VL   SRDA ++CVGS G+    S  +  TA  
Sbjct  62   QSAVAAVEANGKPVKVETQITPGRAAHVLRSQSRDAALLCVGSSGLTHGGSGPVDRTAAA  121

Query  128  LAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGR  187
            +A  A CPVA++ S      S   W+VV + D+P  E VL     EA LR A +  +   
Sbjct  122  VALTASCPVAIIHSAGTN--SKPGWVVVEVNDSPAGELVLRTGVEEALLRGAALRVVATW  179

Query  188  PEELREIPD------------GEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERV  235
            P    +I D             ++ERR+  W  RHP++ V+ + T   I  +LA H + +
Sbjct  180  PSRYPDIHDDGAVANKNRSVKAQWERRLAPWRLRHPELEVHAVATPGSILNYLARHRDPI  239

Query  236  QLAVIGGGEAGQLARLVGPSGHPVFRHAECSVLV  269
             LA++    A  +A L+ P G    R     VL+
Sbjct  240  GLAIVPHERAAGVAELLAPRGRDPLRDGCFDVLI  273


>gi|315444761|ref|YP_004077640.1| universal stress protein UspA-like protein [Mycobacterium sp. 
Spyr1]
 gi|315263064|gb|ADT99805.1| universal stress protein UspA-like protein [Mycobacterium sp. 
Spyr1]
Length=274

 Score =  159 bits (402),  Expect = 4e-37, Method: Compositional matrix adjust.
 Identities = 105/262 (41%), Positives = 149/262 (57%), Gaps = 6/262 (2%)

Query  11   TIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHP---SPDDYDRDLAHAERSL  67
             I+VGIDGS AA+ AALW VD+A+   +PLRLV VI         P D  R LA AE ++
Sbjct  9    CIVVGIDGSPAAVDAALWAVDQAVDLDIPLRLVYVIDADEEGAVDPHDQARQLATAEMAV  68

Query  68   REAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATE  127
            R A +A+E+  + VKIE +I RG     L+EA+R A +IC+G+ G+       +GSTA  
Sbjct  69   RYALTALESTEQPVKIEVEILRGRPVQTLLEAARSAVLICLGARGLKHSTQGRIGSTAAA  128

Query  128  LAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGR  187
            ++  AHCPVAV+R+       D   +V+ +TD  D  AVLE    EA+ R AP+  L   
Sbjct  129  VSATAHCPVAVVRAHRPHRRPD-RAVVIEITDNVDGGAVLERGLDEARRRGAPVRVLTSA  187

Query  188  PEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAGQ  247
              +L       +ERR+ +W HR+PD+ +  +    G+  +LA H + +QL V G    G 
Sbjct  188  RPQLDVT--ARWERRLAEWRHRYPDLDISAVRARDGLFDYLAAHGDGLQLLVTGRNRPGG  245

Query  248  LARLVGPSGHPVFRHAECSVLV  269
            +A LVG  G+   R  +CS+LV
Sbjct  246  VAPLVGTPGNAALRDTDCSILV  267


>gi|120403537|ref|YP_953366.1| UspA domain-containing protein [Mycobacterium vanbaalenii PYR-1]
 gi|119956355|gb|ABM13360.1| UspA domain protein [Mycobacterium vanbaalenii PYR-1]
Length=271

 Score =  157 bits (397),  Expect = 1e-36, Method: Compositional matrix adjust.
 Identities = 103/269 (39%), Positives = 151/269 (57%), Gaps = 12/269 (4%)

Query  6    EPTMKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKP-THPSPDDYD--RDLAH  62
            EP+   I+VGIDGS A + AALW +++A+   +PLRLV V+    H + D +D  R +A 
Sbjct  3    EPS-ACIVVGIDGSPAGVDAALWAIEQAVDHDMPLRLVYVVDAGEHGTVDPHDQARSIAT  61

Query  63   AERSLREAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILG  122
            AE +LR A +AVE+  + VKIE +I +G     L+EA+R A M+C+G+ G+       +G
Sbjct  62   AEVALRYALAAVESVERPVKIEVEILQGRPVQTLLEAARSAAMLCIGARGLKHSTQGRIG  121

Query  123  STATELAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAP--  180
            STA  LA  A CPVA++RS   +P      +V+  TD     AV++    EAK R+ P  
Sbjct  122  STAVALATSALCPVAIVRSH--RPHRRDRAVVIEFTDG----AVMQRGLAEAKRRRVPAR  175

Query  181  ILALGGRPEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVI  240
            +L       + R      +ERR+ +W   +PDV + P++       +LA H + VQL V 
Sbjct  176  VLIPARTHPDARSHASAAWERRLAEWQRSYPDVEIVPVSERIDTLDYLAAHGDDVQLVVA  235

Query  241  GGGEAGQLARLVGPSGHPVFRHAECSVLV  269
            G    G +A LVGP G+   R  +CS+LV
Sbjct  236  GRNRPGGVAALVGPPGNAALRDTDCSILV  264


>gi|108798077|ref|YP_638274.1| hypothetical protein Mmcs_1105 [Mycobacterium sp. MCS]
 gi|119867173|ref|YP_937125.1| UspA domain-containing protein [Mycobacterium sp. KMS]
 gi|108768496|gb|ABG07218.1| UspA [Mycobacterium sp. MCS]
 gi|119693262|gb|ABL90335.1| UspA domain protein [Mycobacterium sp. KMS]
Length=299

 Score =  156 bits (394),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 104/264 (40%), Positives = 151/264 (58%), Gaps = 6/264 (2%)

Query  12   IIVGIDGSHAAITAALWGVDEAISRAVPLRLV---SVIKPTHPSPDDYDRDLAHAERSLR  68
            ++VG+DGS AA+ A  W VDEA+ R+VPLRLV    V      S D++  +  +AE +LR
Sbjct  38   VVVGVDGSQAALDAVRWAVDEAVGRSVPLRLVHATGVTPRVDQSDDEFRLEREYAETALR  97

Query  69   EAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATEL  128
             A +A ++AG+ VK+ET+I  G     LV  S  A M+C+GSVGIG  A+ +LGSTA  +
Sbjct  98   AASAAAQSAGREVKVETEILWGSPDSELVTESHGASMVCIGSVGIGAIANVLLGSTAVTV  157

Query  129  AEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRP  188
            + +A C VAV+R    +PA +   + V     PD++ V+  A  EA+LR  P++ +G R 
Sbjct  158  SMQAQCCVAVLRRGA-RPAPN-GSVAVATDGTPDSDGVVIGALDEARLRGCPVVVVGVRR  215

Query  189  EELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLA-DHDERVQLAVIGGGEAGQ  247
             E       E +RR      R+PDVR   + T  GI R+L    D+ +++ V+G  +A  
Sbjct  216  WESHAPSYDELDRRTAQLADRYPDVRTKVVATDGGIVRYLTHQRDDDIEMVVVGSADADA  275

Query  248  LARLVGPSGHPVFRHAECSVLVVR  271
            +A +VGP      R    SVLVVR
Sbjct  276  VADMVGPHDTLFGRDKGHSVLVVR  299


>gi|126433737|ref|YP_001069428.1| UspA domain-containing protein [Mycobacterium sp. JLS]
 gi|126233537|gb|ABN96937.1| UspA domain protein [Mycobacterium sp. JLS]
Length=299

 Score =  156 bits (394),  Expect = 4e-36, Method: Compositional matrix adjust.
 Identities = 105/266 (40%), Positives = 152/266 (58%), Gaps = 6/266 (2%)

Query  10   KTIIVGIDGSHAAITAALWGVDEAISRAVPLRLV---SVIKPTHPSPDDYDRDLAHAERS  66
            + ++VG+DGS AA+ A  W VDEA+ R+VPLRLV    V      S D++  +  +AE +
Sbjct  36   RPVVVGVDGSQAALDAVRWAVDEAVGRSVPLRLVHATGVTPRVDQSDDEFRLEREYAETA  95

Query  67   LREAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTAT  126
            LR A +A ++AG+ VK+ET+I  G     LV  S  A M+CVGSVGIG  A+ +LGSTA 
Sbjct  96   LRAASAAAQSAGREVKLETEILWGSPDSELVTESHGASMVCVGSVGIGAIANVLLGSTAV  155

Query  127  ELAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGG  186
             ++ +A C VAV+R    +PA +   + V     PD++ V+  A  EA+LR  P++ +G 
Sbjct  156  TVSMQAQCCVAVLRRGA-RPAPN-GSVAVATDGTPDSDGVVIGALDEARLRGCPVVVVGV  213

Query  187  RPEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLA-DHDERVQLAVIGGGEA  245
            R  E       E +RR      R+PDVR   + T  GI R+L    D+ +++ V+G  +A
Sbjct  214  RRWESHAPSYDELDRRTAQLADRYPDVRTKVVATDGGIVRYLTHQRDDDIEMVVVGSADA  273

Query  246  GQLARLVGPSGHPVFRHAECSVLVVR  271
              +A +VGP      R    SVLVVR
Sbjct  274  DAVADMVGPHDTLFGRDKGHSVLVVR  299


>gi|169630983|ref|YP_001704632.1| hypothetical protein MAB_3904 [Mycobacterium abscessus ATCC 19977]
 gi|169242950|emb|CAM63978.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=285

 Score =  150 bits (380),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 105/276 (39%), Positives = 151/276 (55%), Gaps = 20/276 (7%)

Query  12   IIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLREAQ  71
            ++VGIDGS +A+ AALW VDEA+ R +PLRLV V  P    P+  D + + A  ++R A 
Sbjct  11   VLVGIDGSRSAVRAALWAVDEALHRELPLRLVHV-TPQTEFPEFSD-ERSPAGTAVRHAF  68

Query  72   SAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATELAEK  131
              + A  K VK+E +I  G    VL++ASR A M+CVG++GI    +  +GSTA E+   
Sbjct  69   RQIGATHKPVKVEAEIRHGRVADVLLDASRSAVMLCVGAIGISGADTRKVGSTAAEVLRS  128

Query  132  AHCPVAVMRSKVDQPAS--DINWIVVRMTDAPDNEAVLEYAAREAKLRQAPI-LALGGRP  188
              CPVAV+R   D P+S    + +VV + ++ ++   LE AA EA+LR AP+ + L  RP
Sbjct  129  VRCPVAVIR---DDPSSLRGTSAVVVEIDESHESVTPLELAAHEARLRAAPLRVLLRHRP  185

Query  189  EEL------------REIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQ  236
              L            R +     ERR+     R+PD+ +  +    G   +L  H   VQ
Sbjct  186  ISLSGQRVATLTRVDRRVAAVHVERRLAPLRVRYPDLDIRALDPVGGTLDYLERHGHTVQ  245

Query  237  LAVIGGGEAGQLARLVGPSGHPVFRHAECSVLVVRR  272
            L V+G G+A  +  LVGP+G  V     CSVL+  R
Sbjct  246  LVVVGAGDAAHVQELVGPNGCGVLGRTHCSVLIAER  281


>gi|108801091|ref|YP_641288.1| hypothetical protein Mmcs_4127 [Mycobacterium sp. MCS]
 gi|119870232|ref|YP_940184.1| UspA domain-containing protein [Mycobacterium sp. KMS]
 gi|108771510|gb|ABG10232.1| UspA [Mycobacterium sp. MCS]
 gi|119696321|gb|ABL93394.1| UspA domain protein [Mycobacterium sp. KMS]
Length=261

 Score =  140 bits (353),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 98/261 (38%), Positives = 140/261 (54%), Gaps = 10/261 (3%)

Query  12   IIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLREAQ  71
            ++VGIDGS AA+ AALW VD A+ R  PLRL+  I+P         R+LA A+ ++R+  
Sbjct  7    VVVGIDGSRAALDAALWAVDAAVGRDTPLRLLYAIEPADHDVAAAARELAIADLAVRDVF  66

Query  72   SAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATELAEK  131
            +A++A  + V+IE +I +  A   L  ASR A ++CVG+VG+       +GSTA  LA  
Sbjct  67   TAIQATERPVRIEVEIVQDSAVRALASASRSAALVCVGAVGLQDAIPGRIGSTAATLARS  126

Query  132  AHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRPEEL  191
            AHCPVA++R   D       +++  + D  D+ AVL +A  EA LR+ P+  L    E  
Sbjct  127  AHCPVALVRHNTD------GYVLAEVEDWSDSGAVLRHAVDEALLRRVPLRVLTPGSESA  180

Query  192  REIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAGQLARL  251
            R        R +  W  RHPD+ +  +T+  G+  FLA    RVQL V+G   A      
Sbjct  181  R----APAARTLDGWRRRHPDLEIDLLTSDDGVVDFLAGEPGRVQLVVVGAERARGPGEF  236

Query  252  VGPSGHPVFRHAECSVLVVRR  272
              P G  V R A C++L   R
Sbjct  237  TDPRGRSVLREAGCTLLTCHR  257


>gi|126436929|ref|YP_001072620.1| UspA domain-containing protein [Mycobacterium sp. JLS]
 gi|126236729|gb|ABO00130.1| UspA domain protein [Mycobacterium sp. JLS]
Length=261

 Score =  139 bits (351),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 98/261 (38%), Positives = 139/261 (54%), Gaps = 10/261 (3%)

Query  12   IIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLREAQ  71
            ++VGIDGS AA+ AALW VD A+ R  PLRL+  I+P         R+LA A+ ++R+  
Sbjct  7    VVVGIDGSRAALDAALWAVDAAVGRDTPLRLLYAIEPADHDVAAAARELAIADLAVRDVF  66

Query  72   SAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATELAEK  131
            +A++A  + V+IE +I +  A   L  ASR A ++CVG+VG+       +GSTA  LA  
Sbjct  67   TAIQATERPVRIEVEIVQDSAVRALASASRSAALVCVGAVGLQDAIPGRIGSTAATLARS  126

Query  132  AHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRPEEL  191
            AHCPVA++R   D       +++  + D  D+ AVL +A  EA LR+ P+  L    E  
Sbjct  127  AHCPVALVRHNTD------GYVLAEVEDWSDSGAVLRHAVDEALLRRVPLRVLTPGSESA  180

Query  192  REIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAGQLARL  251
            R        R +  W  RHPD+ +   T+  G+  FLA    RVQL V+G   A      
Sbjct  181  R----APAARTLDGWRRRHPDLEIDLFTSDDGVVDFLAGEPGRVQLVVVGAERARGPGEF  236

Query  252  VGPSGHPVFRHAECSVLVVRR  272
              P G  V R A C++L   R
Sbjct  237  TDPRGRSVLREAGCTLLTCHR  257


>gi|183981530|ref|YP_001849821.1| hypothetical protein MMAR_1515 [Mycobacterium marinum M]
 gi|183174856|gb|ACC39966.1| conserved hypothetical membrane protein [Mycobacterium marinum 
M]
Length=264

 Score =  139 bits (349),  Expect = 6e-31, Method: Compositional matrix adjust.
 Identities = 104/278 (38%), Positives = 144/278 (52%), Gaps = 25/278 (8%)

Query  1    MSGRGEPTMKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDL  60
            MS +  P    I+VGIDGS A+  AA+W VDEA+SR +P+RLV +I P      D D   
Sbjct  1    MSNQAAPA---IVVGIDGSRASTHAAVWAVDEAVSRDIPVRLVYIIDPAQAPASDRDGRQ  57

Query  61   AHAERSLREAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSI  120
            + A  +L + Q AVEA G+ VKIET+I  G     L+E SR A M+CVGS+G+  +A   
Sbjct  58   SAARAALFDVQRAVEATGQPVKIETEILWGRPLTKLLEESRTAVMVCVGSIGL-NHARRG  116

Query  121  LGSTATELAEKAHCPVAVMRSKVDQP-ASDINWIVVRMTDAPDNEAVLEYAAREAKLRQA  179
             GS A  LA  A CPVAV++S      A  +  +V  +    DN +VL +A  EA+LR  
Sbjct  117  EGSVAGTLAGSALCPVAVIQSPAGAAGAPKVGEVVAEV----DNGSVLRHAFEEARLRNV  172

Query  180  PILALGGR------PEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDE  233
            P+ A+  R       E+   +   +  RR+  W   +PDVRV          R++A + +
Sbjct  173  PLRAISSRVATGHGSEDGNRLATAQLTRRLTRWTRLYPDVRVESAIIAGHACRYMAANAK  232

Query  234  RVQLAVIGGGEAGQLARLVGPSGHPVFRHAECSVLVVR  271
              +L V     A Q+  + G         A CSVL VR
Sbjct  233  PDELYVT-DSHAAQVCSVYG---------AGCSVLTVR  260


>gi|118617915|ref|YP_906247.1| hypothetical protein MUL_2424 [Mycobacterium ulcerans Agy99]
 gi|118570025|gb|ABL04776.1| conserved hypothetical membrane protein [Mycobacterium ulcerans 
Agy99]
Length=264

 Score =  139 bits (349),  Expect = 7e-31, Method: Compositional matrix adjust.
 Identities = 104/278 (38%), Positives = 144/278 (52%), Gaps = 25/278 (8%)

Query  1    MSGRGEPTMKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDL  60
            MS +  P    I+VGIDGS A+  AA+W VDEA+SR +P+RLV +I P      D D   
Sbjct  1    MSNQAAPA---IVVGIDGSRASTHAAVWAVDEAVSRDIPVRLVYIIDPAQAPAGDRDGRQ  57

Query  61   AHAERSLREAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSI  120
            + A  +L + Q AVEA G+ VKIET+I  G     L+E SR A M+CVGS+G+  +A   
Sbjct  58   SSARAALFDVQRAVEATGQPVKIETEILWGRPLTKLLEESRTAVMVCVGSIGLN-HARRG  116

Query  121  LGSTATELAEKAHCPVAVMRSKVDQP-ASDINWIVVRMTDAPDNEAVLEYAAREAKLRQA  179
             GS A  LA  A CPVAV++S      A  +  +V  +    DN +VL +A  EA+LR  
Sbjct  117  EGSVAGTLAGSALCPVAVIQSPAGAAGAPKVGEVVAEV----DNGSVLRHAFEEARLRNV  172

Query  180  PILALGGR------PEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDE  233
            P+ A+  R       E+   +   +  RR+  W   +PDVRV          R++A + +
Sbjct  173  PLRAISSRVATDHGSEDGNRLATAQLTRRLTRWTRLYPDVRVESAIIAGHACRYMAANAK  232

Query  234  RVQLAVIGGGEAGQLARLVGPSGHPVFRHAECSVLVVR  271
              +L V     A Q+  + G         A CSVL VR
Sbjct  233  PDELYVT-DSHAAQVCSVYG---------AGCSVLTVR  260


>gi|340627039|ref|YP_004745491.1| hypothetical protein MCAN_20511 [Mycobacterium canettii CIPT 
140010059]
 gi|340005229|emb|CCC44383.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=279

 Score =  138 bits (347),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 95/266 (36%), Positives = 140/266 (53%), Gaps = 6/266 (2%)

Query  11   TIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHA---ERSL  67
            +I+VGIDGS  A+ AALW VDEA SR +PLRL+  I+P  P    +          E ++
Sbjct  9    SIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARKLAAAENAV  68

Query  68   REAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATE  127
            R A +AVEAA + VK+E +I +      L+ AS  A ++CVG++G+  +     GSTA  
Sbjct  69   RYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPERAGSTAAA  128

Query  128  LAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGR  187
            LA  A CPVA++RS       D  WIVV    + D   +L     EA+LR +P+  +  R
Sbjct  129  LALSAQCPVAIVRSHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDSPVRVVTCR  188

Query  188  PEELREIPD---GEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGE  244
               + +  D      +R +  W  R+PDVRV     H  +  +LA     V + V+   +
Sbjct  189  QSGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSVHMVVVSASD  248

Query  245  AGQLARLVGPSGHPVFRHAECSVLVV  270
               + +LVG  G+ V + A C++LVV
Sbjct  249  QEHVEQLVGAPGNAVLQEAGCTLLVV  274


>gi|15609165|ref|NP_216544.1| hypothetical protein Rv2028c [Mycobacterium tuberculosis H37Rv]
 gi|15841515|ref|NP_336552.1| universal stress protein [Mycobacterium tuberculosis CDC1551]
 gi|31793210|ref|NP_855703.1| hypothetical protein Mb2053c [Mycobacterium bovis AF2122/97]
 75 more sequence titles
 Length=279

 Score =  136 bits (343),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 94/266 (36%), Positives = 140/266 (53%), Gaps = 6/266 (2%)

Query  11   TIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHA---ERSL  67
            +I+VGIDGS  A+ AALW VDEA SR +PLRL+  I+P  P    +          E ++
Sbjct  9    SIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARKLAAAENAV  68

Query  68   REAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATE  127
            R A +AVEAA + VK+E +I +      L+ AS  A ++CVG++G+  +    +GSTA  
Sbjct  69   RYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPERVGSTAAA  128

Query  128  LAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGR  187
            LA  A CPVA++R        D  WIVV    + D   +L     EA+LR +P+  +  R
Sbjct  129  LALSAQCPVAIVRPHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDSPVRVVTCR  188

Query  188  PEELREIPD---GEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGE  244
               + +  D      +R +  W  R+PDVRV     H  +  +LA     V + V+   +
Sbjct  189  QSGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSVHMVVLSASD  248

Query  245  AGQLARLVGPSGHPVFRHAECSVLVV  270
               + +LVG  G+ V + A C++LVV
Sbjct  249  QEHVEQLVGAPGNAVLQEAGCTLLVV  274


>gi|240168619|ref|ZP_04747278.1| hypothetical protein MkanA1_04860 [Mycobacterium kansasii ATCC 
12478]
Length=266

 Score =  131 bits (330),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 104/277 (38%), Positives = 144/277 (52%), Gaps = 28/277 (10%)

Query  6    EPTMKTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPS---PDDYDRDLAH  62
             P+   ++VGIDGS AA  AALW +DEA+SR +PLRLV VI P  PS     D  + +AH
Sbjct  3    NPSAPAVVVGIDGSKAATQAALWAIDEAVSRDIPLRLVYVIDPLEPSGGGGRDGRQGMAH  62

Query  63   AERSLREAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILG  122
            A  +L +   AVEA G  VK+ET++ RG     L+E SR A M+CVGS+G+  +A    G
Sbjct  63   A--ALFDVCRAVEATGHPVKVETEVLRGRPLTKLMEESRSAVMVCVGSIGLN-HARRGEG  119

Query  123  STATELAEKAHCPVAVMRSKVDQ-PASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPI  181
            S A  LA  A CPVAV++      P   ++ +V  +    +N +VL +A  EA+LR   +
Sbjct  120  SVAATLAGSALCPVAVIQVPPGGVPVPKVSTVVAEV----NNGSVLRHAFEEARLRGVAL  175

Query  182  LALGGR-PEELREIPDG------EFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDER  234
             AL  R P+   +  DG      +  RR+  W   +PDV+V          R++A + + 
Sbjct  176  RALSARMPDTAGDTGDGNRLAQAQLSRRLARWTRLYPDVKVESTIIRGHACRYIAANAKP  235

Query  235  VQLAVIGGGEAGQLARLVGPSGHPVFRHAECSVLVVR  271
             QL V     A Q   +           A CSVL VR
Sbjct  236  DQLYVT-DSHAAQACNVYS---------AGCSVLTVR  262


>gi|145225572|ref|YP_001136250.1| UspA domain-containing protein [Mycobacterium gilvum PYR-GCK]
 gi|145218058|gb|ABP47462.1| UspA domain protein [Mycobacterium gilvum PYR-GCK]
Length=246

 Score =  128 bits (321),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 93/265 (36%), Positives = 133/265 (51%), Gaps = 31/265 (11%)

Query  10   KTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLRE  69
            K ++VG+DGS AA+ A  W   EA++R V LRLV  +    P+PDD           L  
Sbjct  9    KPVVVGVDGSRAAVNAVRWAAAEALAREVCLRLVHAV--ASPAPDDA---------VLDR  57

Query  70   AQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATELA  129
            A+ A  A+   +++E     G  GPVLV  SRDA MICVGS  +    +  +G TA  LA
Sbjct  58   AKIAALASHDSLEVEVVSTVGEPGPVLVRESRDASMICVGSRPVASADAPTIGPTARALA  117

Query  130  EKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRPE  189
              A CPVAV+R+  D        I V ++D  D +A +  A  E +LR A +        
Sbjct  118  AGADCPVAVIRTGRDGLPQTAGAIAVVLSDDDDTDATVHLAMHEGRLRHATVR-------  170

Query  190  ELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHD---ERVQLAVIGGGEAG  246
                    + +RR   W  R+PDV V  +   TG  R  A +D     + LAV+G  +A 
Sbjct  171  --------QIDRRTDSWVRRYPDVHVELVAAGTG--RQYARNDLAPNGIGLAVVGRRDAV  220

Query  247  QLARLVGPSGHPVFRHAECSVLVVR  271
            +LA +   + HP+  + +CS+L+VR
Sbjct  221  ELAEVGRNNSHPILGYPDCSLLLVR  245


>gi|315445925|ref|YP_004078804.1| universal stress family protein [Mycobacterium sp. Spyr1]
 gi|315264228|gb|ADU00970.1| universal stress family protein [Mycobacterium sp. Spyr1]
Length=246

 Score =  126 bits (316),  Expect = 4e-27, Method: Compositional matrix adjust.
 Identities = 92/265 (35%), Positives = 132/265 (50%), Gaps = 31/265 (11%)

Query  10   KTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLRE  69
            K ++VG+DGS AA+ A  W   EA++R V LRLV  +    P+PDD           L  
Sbjct  9    KPVVVGVDGSRAAVNAVRWAAAEALAREVCLRLVHAV--ASPAPDDA---------VLDR  57

Query  70   AQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATELA  129
            A+ A  A+   +++E     G  GPVLV  SRDA MICVGS  +    +  +G TA  LA
Sbjct  58   AKIAALASHDSLEVEVVSTVGEPGPVLVRESRDASMICVGSRPVASADAPTIGPTARALA  117

Query  130  EKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRPE  189
              A CPVAV+R+  D        I V ++D  D +A +  A  E +LR A +        
Sbjct  118  AGADCPVAVIRTGRDGLPQTAGAIAVVLSDDDDTDATVHLAMHEGRLRHATVR-------  170

Query  190  ELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHD---ERVQLAVIGGGEAG  246
                    + +RR   W  R+PDV V  +    G  R  A +D     + LAV+G  +A 
Sbjct  171  --------QIDRRTDSWVRRYPDVHVELVA--AGAGRQYARNDLAPNGIGLAVVGRRDAV  220

Query  247  QLARLVGPSGHPVFRHAECSVLVVR  271
            +LA +   + HP+  + +CS+L+VR
Sbjct  221  ELAEVGRNNSHPILGYPDCSLLLVR  245


>gi|118469548|ref|YP_889491.1| universal stress protein family protein [Mycobacterium smegmatis 
str. MC2 155]
 gi|118170835|gb|ABK71731.1| universal stress protein family protein [Mycobacterium smegmatis 
str. MC2 155]
Length=280

 Score =  126 bits (316),  Expect = 4e-27, Method: Compositional matrix adjust.
 Identities = 88/277 (32%), Positives = 139/277 (51%), Gaps = 19/277 (6%)

Query  10   KTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPD--DYDRDLAHAERSL  67
            + +IVGIDGS  A+ AA+W V EA+SR VPLRL+  + P     D  +  R LA AE ++
Sbjct  5    RPVIVGIDGSQPAVDAAIWAVKEALSRGVPLRLIYAVHPDDNGADHENSARALATAEVAI  64

Query  68   REAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATE  127
            R+A  AVE+  + V+IE ++ +      L+ AS++  ++CVG+ G+ +     +GS A+ 
Sbjct  65   RQACVAVESTEQPVQIELEVVQDKPIEALIAASQNTPLLCVGASGLTQAGRGGIGSVASA  124

Query  128  LAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGG-  186
            +   A CPVAV    V  P      I+V     P     L+    EA+LR AP+  +   
Sbjct  125  VLRSAQCPVAV----VATPGKG-RRILVEFDGRPSASTALQTGVDEARLRDAPLSVMTTW  179

Query  187  --RPEELRE---------IPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERV  235
              R  EL E         +   + +RR+  +  R+P++ +  IT H   A ++A + + V
Sbjct  180  QHRHRELYEEKVAEERNRLAQSQLDRRMTRYRKRYPELDLELITDHGNTADYVAANPQTV  239

Query  236  QLAVIGGGEAGQLARLVGPSGHPVFRHAECSVLVVRR  272
            QL V+G     +   +  P+       A CS+L   R
Sbjct  240  QLIVVGAERFNRAGDVTDPAALGALVDAGCSLLTCDR  276


>gi|15610270|ref|NP_217650.1| hypothetical protein Rv3134c [Mycobacterium tuberculosis H37Rv]
 gi|15842707|ref|NP_337744.1| universal stress protein [Mycobacterium tuberculosis CDC1551]
 gi|31794310|ref|NP_856803.1| hypothetical protein Mb3158c [Mycobacterium bovis AF2122/97]
 79 more sequence titles
 Length=268

 Score =  125 bits (315),  Expect = 5e-27, Method: Compositional matrix adjust.
 Identities = 98/271 (37%), Positives = 138/271 (51%), Gaps = 23/271 (8%)

Query  10   KTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLRE  69
            + ++VGIDGS AA  AALW VDEA++R +PLRLV VI P+  S        + A  +L +
Sbjct  8    RAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQSAARAALHD  67

Query  70   AQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATELA  129
            A   VEA G+ VKIET++  G     L++ SR A M+CVGSVG+  +     GS A  LA
Sbjct  68   ASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLD-HVRGRRGSVAATLA  126

Query  130  EKAHCPVAVMRSKVDQPA--SDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILAL---  184
              A CPVAV+     +PA  S ++ +V  +    DN  VL +A  EA+LR  P+ A+   
Sbjct  127  GSALCPVAVIHPSPAEPATTSQVSAVVAEV----DNGVVLRHAFEEARLRGVPLRAVAVH  182

Query  185  -GGRPEELRE---IPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVI  240
                P+++ +   +      RR+  W   +P+VRV          R LA + +  QL V 
Sbjct  183  AAETPDDVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHLAANAKPGQLFVA  242

Query  241  GGGEAGQLARLVGPSGHPVFRHAECSVLVVR  271
                A +L     P          C+VL VR
Sbjct  243  DSHSAHELCGAYQPG---------CAVLTVR  264


>gi|296169213|ref|ZP_06850866.1| universal stress protein [Mycobacterium parascrofulaceum ATCC 
BAA-614]
 gi|295896111|gb|EFG75778.1| universal stress protein [Mycobacterium parascrofulaceum ATCC 
BAA-614]
Length=278

 Score =  124 bits (310),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 90/231 (39%), Positives = 132/231 (58%), Gaps = 14/231 (6%)

Query  12   IIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTH-PSPDDYDRDLAHAERSLREA  70
            ++VG+DGS AA  AALW +DEA+SR +P+RLV V+ P    +P   +  LA A  +L +A
Sbjct  23   VVVGVDGSKAAEQAALWAIDEAVSRDIPMRLVYVVDPRDAATPSACEARLAAARTALADA  82

Query  71   QSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATELAE  130
              AV+AAG  VK+ETDI  G     L+E SR A M+C+GS+G+ ++A     S AT LA 
Sbjct  83   HRAVDAAGAPVKVETDIVCGRPLTKLLEESRSAAMMCIGSIGL-KHARHGATSVATALAR  141

Query  131  KAHCPVAVMRSKVDQPAS-DINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALG-GRP  188
             A CPVAV+     + A+  ++ ++  +    DN  VL +A  EA+LR A + AL   R 
Sbjct  142  SAGCPVAVIHQPARRSAAPKVDSVLAEV----DNGVVLRHAFEEARLRGAGLRALWVCRG  197

Query  189  EELREIPDG------EFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDE  233
            E+ R+  +G      +  RR+  W   +PDVR  P+     + ++L  H E
Sbjct  198  EDQRDADEGTSSARAQLSRRLARWTRLYPDVRAEPVIVRGSVQQYLRAHPE  248


>gi|312141769|ref|YP_004009105.1| universal stress family protein [Rhodococcus equi 103S]
 gi|311891108|emb|CBH50427.1| putative universal stress family protein [Rhodococcus equi 103S]
Length=283

 Score =  113 bits (283),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 88/269 (33%), Positives = 130/269 (49%), Gaps = 9/269 (3%)

Query  12   IIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSP---DDYDRDLAHAERSLR  68
            +IVG+DGS AAI A  W   EA +R VPL+LV VI   +  P   DD + + A    +L+
Sbjct  10   VIVGVDGSDAAIHAVRWAAVEAHARKVPLKLVHVIDTENDFPFVADDLEEEEAAGREALK  69

Query  69   EAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATEL  128
             A+ A       + IE ++ RG      V+ S  A ++ VGSVG G +   +LGSTA  L
Sbjct  70   AAREAATIEDYTIDIEVELLRGRVNRAFVDLSEKASLLVVGSVGAGFFERMVLGSTALSL  129

Query  129  AEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDN-EAVLEYAAREAKLRQAPILALGGR  187
            A  A C VAV+R     P    +  VV   D  D+ + V+  A +EA +R A + A+  R
Sbjct  130  AHHAKCTVAVVRGADGSPVPPTSGPVVAGVDHSDSADIVVGTAMQEASIRHAEMTAVHAR  189

Query  188  ----PEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGG-  242
                 +E  E   G  +R +     + P V+V  +    G  + L       +  V+G  
Sbjct  190  RRRGTQEADEEARGRIDRLIATLGAKFPSVQVETVIAEAGPTKHLVALSATARSIVVGSR  249

Query  243  GEAGQLARLVGPSGHPVFRHAECSVLVVR  271
            G  G  + L+G +   +  HA+C V+V R
Sbjct  250  GRGGFESALLGSTCQSLLYHAQCPVIVAR  278


 Score = 45.1 bits (105),  Expect = 0.010, Method: Compositional matrix adjust.
 Identities = 31/65 (48%), Positives = 37/65 (57%), Gaps = 4/65 (6%)

Query  81   VKIETDIPRGPAGPV--LVEASRDAEMICVGSVGIGRYASSILGSTATELAEKAHCPVAV  138
            V++ET I    AGP   LV  S  A  I VGS G G + S++LGST   L   A CPV V
Sbjct  219  VQVETVI--AEAGPTKHLVALSATARSIVVGSRGRGGFESALLGSTCQSLLYHAQCPVIV  276

Query  139  MRSKV  143
             RS+V
Sbjct  277  ARSRV  281


>gi|325672969|ref|ZP_08152663.1| universal stress protein [Rhodococcus equi ATCC 33707]
 gi|325556222|gb|EGD25890.1| universal stress protein [Rhodococcus equi ATCC 33707]
Length=274

 Score =  112 bits (281),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 88/269 (33%), Positives = 130/269 (49%), Gaps = 9/269 (3%)

Query  12   IIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSP---DDYDRDLAHAERSLR  68
            +IVG+DGS AAI A  W   EA +R VPL+LV VI   +  P   DD + + A    +L+
Sbjct  1    MIVGVDGSDAAIHAVRWAAVEAHARKVPLKLVHVIDTENDFPFVADDLEEEEAAGREALK  60

Query  69   EAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATEL  128
             A+ A       + IE ++ RG      V+ S  A ++ VGSVG G +   +LGSTA  L
Sbjct  61   AAREAATIEDYTIDIEVELLRGRVNRAFVDLSEKASLLVVGSVGAGFFERMVLGSTALSL  120

Query  129  AEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDN-EAVLEYAAREAKLRQAPILALGGR  187
            A  A C VAV+R     P    +  VV   D  D+ + V+  A +EA +R A + A+  R
Sbjct  121  AHHAKCTVAVVRGADGSPVPPTSGPVVAGVDHSDSADIVVGTAMQEASIRHAEMTAVHAR  180

Query  188  ----PEELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGG-  242
                 +E  E   G  +R +     + P V+V  +    G  + L       +  V+G  
Sbjct  181  RRRGTQEADEEARGRIDRLIATLGAKFPSVQVETVIAEAGPTKHLVALSATARSIVVGSR  240

Query  243  GEAGQLARLVGPSGHPVFRHAECSVLVVR  271
            G  G  + L+G +   +  HA+C V+V R
Sbjct  241  GRGGFESALLGSTCQSLLYHAQCPVIVAR  269


 Score = 45.1 bits (105),  Expect = 0.011, Method: Compositional matrix adjust.
 Identities = 31/65 (48%), Positives = 37/65 (57%), Gaps = 4/65 (6%)

Query  81   VKIETDIPRGPAGPV--LVEASRDAEMICVGSVGIGRYASSILGSTATELAEKAHCPVAV  138
            V++ET I    AGP   LV  S  A  I VGS G G + S++LGST   L   A CPV V
Sbjct  210  VQVETVIAE--AGPTKHLVALSATARSIVVGSRGRGGFESALLGSTCQSLLYHAQCPVIV  267

Query  139  MRSKV  143
             RS+V
Sbjct  268  ARSRV  272


>gi|336459367|gb|EGO38310.1| universal stress family protein [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=252

 Score =  112 bits (281),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 87/224 (39%), Positives = 125/224 (56%), Gaps = 16/224 (7%)

Query  12   IIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDY--DRDLAHAERSLRE  69
            I+VG+DGS AA+ AA+W +DEA+ R +PLRLV VI P H +P  +  D  LA A  +L +
Sbjct  10   IVVGVDGSRAAMHAAVWAIDEAVGRDIPLRLVYVIDP-HGAPGGHGPDTRLAAARAALDD  68

Query  70   AQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATELA  129
            A  AV+A  + VK+ET+I  G     L+E SR A M+CVG +G+  +A     + AT L 
Sbjct  69   AHRAVDAFAQPVKVETEILWGNTAFKLLEQSRSAVMLCVGQIGL-NHACHGGPAIATSLV  127

Query  130  EKAHCPVAVMRSKVDQPASD-INWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRP  188
              A CPVAV++     PA+  ++ +V  +    DN  VL +A  EA+LR   + A+G   
Sbjct  128  RSALCPVAVVQQAPSLPAAARVSGVVAEV----DNGTVLRHAFEEARLRGVGLCAVGNPS  183

Query  189  EELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFL-ADH  231
              +      E ERR+  W   +PDV+        G+ + L ADH
Sbjct  184  ARV------ELERRLARWMRLYPDVQAESAVLTGGVEQHLRADH  221


>gi|254776433|ref|ZP_05217949.1| hypothetical protein MaviaA2_17439 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=257

 Score =  112 bits (279),  Expect = 9e-23, Method: Compositional matrix adjust.
 Identities = 86/224 (39%), Positives = 125/224 (56%), Gaps = 16/224 (7%)

Query  12   IIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDL--AHAERSLRE  69
            I+VG+DGS AA+ AA+W +DEA+ R +PLRLV VI P H +P  ++ D   A A  +L +
Sbjct  15   IVVGVDGSRAAMHAAVWAIDEAVGRDIPLRLVYVIDP-HGAPGGHEPDTRLAAARAALAD  73

Query  70   AQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATELA  129
            A  AV+A  + VK+ET+I  G     L+E SR A M+CVG +G+  +A     + AT L 
Sbjct  74   AHRAVDAFAQPVKVETEILWGNTAFQLLEQSRSAVMLCVGQIGL-NHACHGGPAIATSLV  132

Query  130  EKAHCPVAVMRSKVDQPASD-INWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRP  188
              A CPVAV++     PA+  ++ +V  +    DN  VL +A  EA+LR   + A+G   
Sbjct  133  RSALCPVAVVQQAPSLPAAARVSGVVAEV----DNGTVLRHAFEEARLRGVGLCAVGNPS  188

Query  189  EELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFL-ADH  231
              +      E ERR+  W   +PDV+        G+ + L ADH
Sbjct  189  ARV------ELERRLARWMRLYPDVQAESAVLTGGVEQHLRADH  226


>gi|41409277|ref|NP_962113.1| hypothetical protein MAP3179c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118464029|ref|YP_883163.1| hypothetical protein MAV_4010 [Mycobacterium avium 104]
 gi|41398097|gb|AAS05727.1| hypothetical protein MAP_3179c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118165316|gb|ABK66213.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=252

 Score =  111 bits (278),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 87/224 (39%), Positives = 125/224 (56%), Gaps = 16/224 (7%)

Query  12   IIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDY--DRDLAHAERSLRE  69
            I+VG+DGS AA+ AA+W +DEA+ R +PLRLV VI P H +P  +  D  LA A  +L +
Sbjct  10   IVVGVDGSRAAMHAAVWAIDEAVGRDIPLRLVYVIDP-HGAPGGHGPDTRLAAARAALAD  68

Query  70   AQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATELA  129
            A  AV+A  + VK+ET+I  G     L+E SR A M+CVG +G+  +A     + AT L 
Sbjct  69   AHRAVDAFAQPVKVETEILWGNTAFKLLEQSRSAVMLCVGQIGL-NHACHGGPAIATSLV  127

Query  130  EKAHCPVAVMRSKVDQPASD-INWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRP  188
              A CPVAV++     PA+  ++ +V  +    DN  VL +A  EA+LR   + A+G   
Sbjct  128  RSALCPVAVVQQAPSLPAAARVSGVVAEV----DNGTVLRHAFEEARLRGVGLCAVGNPS  183

Query  189  EELREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFL-ADH  231
              +      E ERR+  W   +PDV+        G+ + L ADH
Sbjct  184  ARV------ELERRLARWMRLYPDVQAESAVLTGGVEQHLRADH  221


>gi|108798076|ref|YP_638273.1| hypothetical protein Mmcs_1104 [Mycobacterium sp. MCS]
 gi|119867172|ref|YP_937124.1| UspA domain-containing protein [Mycobacterium sp. KMS]
 gi|126433736|ref|YP_001069427.1| UspA domain-containing protein [Mycobacterium sp. JLS]
 gi|108768495|gb|ABG07217.1| UspA [Mycobacterium sp. MCS]
 gi|119693261|gb|ABL90334.1| UspA domain protein [Mycobacterium sp. KMS]
 gi|126233536|gb|ABN96936.1| UspA domain protein [Mycobacterium sp. JLS]
Length=295

 Score =  110 bits (276),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 90/289 (32%), Positives = 134/289 (47%), Gaps = 27/289 (9%)

Query  10   KTIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTH-------PSPDDYDRDLAH  62
            + I+VG+DGS   + A  W   EA  R VPL LV V+  T        P  D++ R + H
Sbjct  7    QGIVVGVDGSPQGMRAVTWAAREAAGRDVPLTLVHVLPDTEVRMWLDVPPTDEFWRTVEH  66

Query  63   AER-----SLREAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYA  117
              R     +++ A++AV   G L   +  +  G A P LV+ S+DAEM+ VGS G+G   
Sbjct  67   QNREIQSEAVKTAEAAVAGTGSLTVRQRSV-SGNAVPTLVDLSKDAEMVVVGSRGLGAIG  125

Query  118  SSILGSTATELAEKAHCPVAVMR-SKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKL  176
              ILGS +  L   AHCPVAV+   + D P  D   +VV +  +P +E     A  +A  
Sbjct  126  QRILGSVSRGLVHHAHCPVAVIHDDEPDAPERDRAPVVVGIDGSPASELATAIAFDQASR  185

Query  177  RQAPILALGGRPE-ELREIPDGEF-----------ERRVQDWHHRHPDVRVYPITTHTGI  224
            R+  ++A+    +  +   P+ E+             R+  W  R+PDV V  +      
Sbjct  186  RKVELIAVHAWSDPTIYAFPNEEWMTFKPQADEVLAERLAGWADRYPDVPVQRVVVRDKA  245

Query  225  ARFLADHDERVQLAVIGG-GEAGQLARLVGPSGHPVFRHAECSVLVVRR  272
               L +  E  QL V+G  G  G    L+G     V + A   V+V R+
Sbjct  246  VHQLLEQSEHAQLVVVGSHGRGGFAGMLLGSVSSAVAQAARVPVIVARQ  294


>gi|120402392|ref|YP_952221.1| UspA domain-containing protein [Mycobacterium vanbaalenii PYR-1]
 gi|119955210|gb|ABM12215.1| UspA domain protein [Mycobacterium vanbaalenii PYR-1]
Length=245

 Score =  108 bits (270),  Expect = 8e-22, Method: Compositional matrix adjust.
 Identities = 86/262 (33%), Positives = 128/262 (49%), Gaps = 30/262 (11%)

Query  12   IIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLREAQ  71
            I+VG+DGS AA+ A  W   EA++    LRLV  +    P+  D   D  HAE++ +  +
Sbjct  11   IVVGVDGSQAALNAVRWAAAEALALDASLRLVHAVAAAVPTGSDVVLD--HAEKAAKAIR  68

Query  72   SAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSI-LGSTATELAE  130
            +++       ++E     G  G VL+  S  A M+C+GS    R A    +G  A  LAE
Sbjct  69   TSL-------RVEAAATVGAPGAVLLRESARAAMVCIGS----RPAQGPPIGCIAKVLAE  117

Query  131  KAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRPEE  190
             A CPVA++R++ D        + V ++D  D +AVL  A  E +LR A +         
Sbjct  118  GAGCPVAIIRTRADGAPQTDGVVSVVLSDDDDTDAVLHLAMHEGRLRHATVR--------  169

Query  191  LREIPDGEFERRVQDWHHRHPDVRVYPITTHTGIARFLAD-HDERVQLAVIGGGEAGQLA  249
                   + ++R   W  R+PDV V  +   TG      D  D  V LAV+G  +A +L 
Sbjct  170  -------QIDQRTDSWVRRYPDVHVELVAAGTGRQYHRNDARDTGVGLAVVGRRDAAELV  222

Query  250  RLVGPSGHPVFRHAECSVLVVR  271
             L  P  HP+  + +CSVL+VR
Sbjct  223  ALTVPGCHPILGYPDCSVLLVR  244


>gi|342861029|ref|ZP_08717678.1| hypothetical protein MCOL_19197 [Mycobacterium colombiense CECT 
3035]
 gi|342131473|gb|EGT84743.1| hypothetical protein MCOL_19197 [Mycobacterium colombiense CECT 
3035]
Length=241

 Score =  104 bits (260),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 89/243 (37%), Positives = 127/243 (53%), Gaps = 18/243 (7%)

Query  27   LWGVDEAISRAVPLRLVSVIKPTHPSP-DDYDRDLAHAERSLREAQSAVEAAGKLVKIET  85
            +W +DEA+SR +PLRLV VI     S     D  LA A  +L +A  AV+AAG+ VKIET
Sbjct  1    MWAIDEAVSRDIPLRLVYVIDSHDASGVRAGDTRLAVARAALADAHRAVDAAGEPVKIET  60

Query  86   DIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATELAEKAHCPVAVMRSKVDQ  145
            +I  G     L+EASR A M+C+G +G+  +A     + A  L   A CPVAV++    +
Sbjct  61   EILWGRTVSKLLEASRSAVMVCIGQIGLN-HACHGGPAVAASLVRSALCPVAVIQQSAGR  119

Query  146  P-ASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALG-GRPEELR-EIP-----DG  197
            P A  I+ +V  +    DN  VL +A  EA+LR+A + A+   +   +R E P      G
Sbjct  120  PTAPRISGVVTEV----DNGTVLRHAFDEARLRRATLRAVSVSKVANVRDETPGKASAQG  175

Query  198  EFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAGQLARLVGPSGH  257
            + +RR+  W   +PDV+  P+    G+ R+L  H +  QL V     A  L       GH
Sbjct  176  QLDRRLARWMRLYPDVQAEPVIVTGGVDRYLRAHHDAGQLLVTDSYRAEALCH----DGH  231

Query  258  PVF  260
             V 
Sbjct  232  SVL  234


>gi|254552224|ref|ZP_05142671.1| hypothetical protein Mtube_17513 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
Length=333

 Score =  103 bits (258),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 86/253 (34%), Positives = 124/253 (50%), Gaps = 23/253 (9%)

Query  28   WGVDEAISRAVPLRLVSVIKPTHPSPDDYDRDLAHAERSLREAQSAVEAAGKLVKIETDI  87
            W +DEA++R +PLRLV VI P+  S        + A  +L +A   VEA G+ VKIET++
Sbjct  91   WNLDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQSAARAALHDASRKVEATGQPVKIETEV  150

Query  88   PRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATELAEKAHCPVAVMRSKVDQPA  147
              G     L++ SR A M+CVGSVG+  +     GS A  LA  A CPVAV+     +PA
Sbjct  151  LCGRPLTKLMQESRSAAMLCVGSVGLD-HVRGRRGSVAATLAGSALCPVAVIHPSPAEPA  209

Query  148  --SDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILAL----GGRPEELRE---IPDGE  198
              S ++ +V  +    DN  VL +A  EA+LR  P+ A+       P+++ +   +    
Sbjct  210  TTSQVSAVVAEV----DNGVVLRHAFEEARLRGVPLRAVAVHAAETPDDVEQGSRLAHVH  265

Query  199  FERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEAGQLARLVGPSGHP  258
              RR+  W   +P+VRV          R LA + +  QL V     A +L     P    
Sbjct  266  LSRRLAHWTRLYPEVRVDRAIAGGSACRHLAANAKPGQLFVADSHSAHELCGAYQPG---  322

Query  259  VFRHAECSVLVVR  271
                  C+VL VR
Sbjct  323  ------CAVLTVR  329



Lambda     K      H
   0.318    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 423010730970


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40