BLAST Search Results


BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2628

Length=120
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609765|ref|NP_217144.1|  hypothetical protein Rv2628 [Mycoba...   243    8e-63
gi|121638517|ref|YP_978741.1|  hypothetical protein BCG_2655 [Myc...   240    4e-62
gi|289448280|ref|ZP_06438024.1|  conserved hypothetical protein [...   239    1e-61
gi|340627649|ref|YP_004746101.1|  hypothetical protein MCAN_26741...   238    3e-61
gi|31793814|ref|NP_856307.1|  hypothetical protein Mb2661 [Mycoba...   237    4e-61
gi|308232194|ref|ZP_07415243.2|  hypothetical protein TMAG_02437 ...   180    6e-44
gi|240170621|ref|ZP_04749280.1|  hypothetical protein MkanA1_1500...   114    4e-24
gi|296169060|ref|ZP_06850720.1|  conserved hypothetical protein [...   102    2e-20
gi|118462821|ref|YP_882685.1|  hypothetical protein MAV_3503 [Myc...  99.0    2e-19
gi|254775954|ref|ZP_05217470.1|  hypothetical protein MaviaA2_149...  99.0    2e-19
gi|41408826|ref|NP_961662.1|  hypothetical protein MAP2728 [Mycob...  98.6    3e-19
gi|296170912|ref|ZP_06852449.1|  conserved hypothetical protein [...  95.9    2e-18
gi|254818991|ref|ZP_05223992.1|  hypothetical protein MintA_03646...  93.6    8e-18
gi|342858548|ref|ZP_08715203.1|  hypothetical protein MCOL_06721 ...  93.6    9e-18
gi|120402408|ref|YP_952237.1|  hypothetical protein Mvan_1397 [My...  77.8    6e-13
gi|294993095|ref|ZP_06798786.1|  hypothetical protein Mtub2_00940...  62.8    2e-08
gi|319791257|ref|YP_004152897.1|  type VI secretion protein [Vari...  36.6    1.2  
gi|158341517|ref|YP_001522681.1|  hypothetical protein AM1_H0014 ...  36.2    1.7  
gi|158339633|ref|YP_001521022.1|  hypothetical protein AM1_A0372 ...  35.8    2.0  


>gi|15609765|ref|NP_217144.1| hypothetical protein Rv2628 [Mycobacterium tuberculosis H37Rv]
 gi|15842168|ref|NP_337205.1| hypothetical protein MT2703 [Mycobacterium tuberculosis CDC1551]
 gi|148662468|ref|YP_001283991.1| hypothetical protein MRA_2656 [Mycobacterium tuberculosis H37Ra]
 30 more sequence titles
 gi|148823822|ref|YP_001288576.1| hypothetical protein TBFG_12647 [Mycobacterium tuberculosis F11]
 gi|167967278|ref|ZP_02549555.1| hypothetical protein MtubH3_04262 [Mycobacterium tuberculosis 
H37Ra]
 gi|253798289|ref|YP_003031290.1| hypothetical protein TBMG_01343 [Mycobacterium tuberculosis KZN 
1435]
 gi|254232742|ref|ZP_04926069.1| hypothetical protein TBCG_02570 [Mycobacterium tuberculosis C]
 gi|254365296|ref|ZP_04981341.1| hypothetical protein TBHG_02566 [Mycobacterium tuberculosis str. 
Haarlem]
 gi|254551680|ref|ZP_05142127.1| hypothetical protein Mtube_14689 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|289553582|ref|ZP_06442792.1| hypothetical protein TBXG_01332 [Mycobacterium tuberculosis KZN 
605]
 gi|289746426|ref|ZP_06505804.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289758759|ref|ZP_06518137.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289762802|ref|ZP_06522180.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|297635240|ref|ZP_06953020.1| hypothetical protein MtubK4_14010 [Mycobacterium tuberculosis 
KZN 4207]
 gi|297732234|ref|ZP_06961352.1| hypothetical protein MtubKR_14149 [Mycobacterium tuberculosis 
KZN R506]
 gi|298526104|ref|ZP_07013513.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|313659568|ref|ZP_07816448.1| hypothetical protein MtubKV_14159 [Mycobacterium tuberculosis 
KZN V2475]
 gi|81668657|sp|O06184.1|Y2628_MYCTU RecName: Full=Putative uncharacterized protein Rv2628/MT2703
 gi|2104283|emb|CAB08635.1| HYPOTHETICAL PROTEIN Rv2628 [Mycobacterium tuberculosis H37Rv]
 gi|13882454|gb|AAK47019.1| hypothetical protein MT2703 [Mycobacterium tuberculosis CDC1551]
 gi|124601801|gb|EAY60811.1| hypothetical protein TBCG_02570 [Mycobacterium tuberculosis C]
 gi|134150809|gb|EBA42854.1| hypothetical protein TBHG_02566 [Mycobacterium tuberculosis str. 
Haarlem]
 gi|148506620|gb|ABQ74429.1| hypothetical protein MRA_2656 [Mycobacterium tuberculosis H37Ra]
 gi|148722349|gb|ABR06974.1| hypothetical protein TBFG_12647 [Mycobacterium tuberculosis F11]
 gi|253319792|gb|ACT24395.1| hypothetical protein TBMG_01343 [Mycobacterium tuberculosis KZN 
1435]
 gi|289438214|gb|EFD20707.1| hypothetical protein TBXG_01332 [Mycobacterium tuberculosis KZN 
605]
 gi|289686954|gb|EFD54442.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289710308|gb|EFD74324.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|289714323|gb|EFD78335.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298495898|gb|EFI31192.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|326904240|gb|EGE51173.1| hypothetical protein TBPG_02138 [Mycobacterium tuberculosis W-148]
 gi|328458059|gb|AEB03482.1| hypothetical protein TBSG_01353 [Mycobacterium tuberculosis KZN 
4207]
 gi|344220457|gb|AEN01088.1| hypothetical protein MTCTRI2_2678 [Mycobacterium tuberculosis 
CTRI-2]
Length=120

 Score =  243 bits (620),  Expect = 8e-63, Method: Compositional matrix adjust.
 Identities = 120/120 (100%), Positives = 120/120 (100%), Gaps = 0/120 (0%)

Query  1    MSTQRPRHSGIRAVGPYAWAGRCGRIGRWGVHQEAMMNLAIWHPRKVQSATIYQVTDRSH  60
            MSTQRPRHSGIRAVGPYAWAGRCGRIGRWGVHQEAMMNLAIWHPRKVQSATIYQVTDRSH
Sbjct  1    MSTQRPRHSGIRAVGPYAWAGRCGRIGRWGVHQEAMMNLAIWHPRKVQSATIYQVTDRSH  60

Query  61   DGRTARVPGDEITSTVSGWLSELGTQSPLADELARAVRIGDWPAAYAIGEHLSVEIAVAV  120
            DGRTARVPGDEITSTVSGWLSELGTQSPLADELARAVRIGDWPAAYAIGEHLSVEIAVAV
Sbjct  61   DGRTARVPGDEITSTVSGWLSELGTQSPLADELARAVRIGDWPAAYAIGEHLSVEIAVAV  120


>gi|121638517|ref|YP_978741.1| hypothetical protein BCG_2655 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224991011|ref|YP_002645698.1| hypothetical protein JTY_2649 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|289444169|ref|ZP_06433913.1| hypothetical protein TBLG_01271 [Mycobacterium tuberculosis T46]
 14 more sequence titles
 gi|289570799|ref|ZP_06451026.1| hypothetical protein TBJG_03887 [Mycobacterium tuberculosis T17]
 gi|289575340|ref|ZP_06455567.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289751254|ref|ZP_06510632.1| hypothetical protein TBDG_03423 [Mycobacterium tuberculosis T92]
 gi|289754748|ref|ZP_06514126.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|339632655|ref|YP_004724297.1| hypothetical protein MAF_26470 [Mycobacterium africanum GM041182]
 gi|121494165|emb|CAL72643.1| Hypothetical protein BCG_2655 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224774124|dbj|BAH26930.1| hypothetical protein JTY_2649 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|289417088|gb|EFD14328.1| hypothetical protein TBLG_01271 [Mycobacterium tuberculosis T46]
 gi|289539771|gb|EFD44349.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289544553|gb|EFD48201.1| hypothetical protein TBJG_03887 [Mycobacterium tuberculosis T17]
 gi|289691841|gb|EFD59270.1| hypothetical protein TBDG_03423 [Mycobacterium tuberculosis T92]
 gi|289695335|gb|EFD62764.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|339332011|emb|CCC27717.1| hypothetical protein MAF_26470 [Mycobacterium africanum GM041182]
 gi|341602555|emb|CCC65231.1| hypothetical protein BCGM_2638 [Mycobacterium bovis BCG str. 
Moreau RDJ]
Length=120

 Score =  240 bits (613),  Expect = 4e-62, Method: Compositional matrix adjust.
 Identities = 119/120 (99%), Positives = 119/120 (99%), Gaps = 0/120 (0%)

Query  1    MSTQRPRHSGIRAVGPYAWAGRCGRIGRWGVHQEAMMNLAIWHPRKVQSATIYQVTDRSH  60
            MSTQRPRHSGIRAVGPYAWAGRCGRIGRWGVHQEAMMNLAIWHPRKVQSATIYQVTDR H
Sbjct  1    MSTQRPRHSGIRAVGPYAWAGRCGRIGRWGVHQEAMMNLAIWHPRKVQSATIYQVTDRLH  60

Query  61   DGRTARVPGDEITSTVSGWLSELGTQSPLADELARAVRIGDWPAAYAIGEHLSVEIAVAV  120
            DGRTARVPGDEITSTVSGWLSELGTQSPLADELARAVRIGDWPAAYAIGEHLSVEIAVAV
Sbjct  61   DGRTARVPGDEITSTVSGWLSELGTQSPLADELARAVRIGDWPAAYAIGEHLSVEIAVAV  120


>gi|289448280|ref|ZP_06438024.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289421238|gb|EFD18439.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length=120

 Score =  239 bits (610),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 118/120 (99%), Positives = 118/120 (99%), Gaps = 0/120 (0%)

Query  1    MSTQRPRHSGIRAVGPYAWAGRCGRIGRWGVHQEAMMNLAIWHPRKVQSATIYQVTDRSH  60
            MSTQRPRHSGIRAVGPYAWAGRCGRIGRWGVHQEAMMNLAIWHPRKVQSATIYQVTDR H
Sbjct  1    MSTQRPRHSGIRAVGPYAWAGRCGRIGRWGVHQEAMMNLAIWHPRKVQSATIYQVTDRLH  60

Query  61   DGRTARVPGDEITSTVSGWLSELGTQSPLADELARAVRIGDWPAAYAIGEHLSVEIAVAV  120
            DGRTARVPGDEITSTVSGWLSELGTQSPLADELAR VRIGDWPAAYAIGEHLSVEIAVAV
Sbjct  61   DGRTARVPGDEITSTVSGWLSELGTQSPLADELARTVRIGDWPAAYAIGEHLSVEIAVAV  120


>gi|340627649|ref|YP_004746101.1| hypothetical protein MCAN_26741 [Mycobacterium canettii CIPT 
140010059]
 gi|340005839|emb|CCC45005.1| hypothetical protein MCAN_26741 [Mycobacterium canettii CIPT 
140010059]
Length=120

 Score =  238 bits (606),  Expect = 3e-61, Method: Compositional matrix adjust.
 Identities = 117/120 (98%), Positives = 118/120 (99%), Gaps = 0/120 (0%)

Query  1    MSTQRPRHSGIRAVGPYAWAGRCGRIGRWGVHQEAMMNLAIWHPRKVQSATIYQVTDRSH  60
            MSTQRPRHSGIRAVGPYAWAGRCGRIGRWGVHQEAMMNLAIWHPRKVQ+ATIYQVTDR H
Sbjct  1    MSTQRPRHSGIRAVGPYAWAGRCGRIGRWGVHQEAMMNLAIWHPRKVQAATIYQVTDRLH  60

Query  61   DGRTARVPGDEITSTVSGWLSELGTQSPLADELARAVRIGDWPAAYAIGEHLSVEIAVAV  120
            DGRTARVPGDEITSTVSGWLSELG QSPLADELARAVRIGDWPAAYAIGEHLSVEIAVAV
Sbjct  61   DGRTARVPGDEITSTVSGWLSELGAQSPLADELARAVRIGDWPAAYAIGEHLSVEIAVAV  120


>gi|31793814|ref|NP_856307.1| hypothetical protein Mb2661 [Mycobacterium bovis AF2122/97]
 gi|31619408|emb|CAD94846.1| HYPOTHETICAL PROTEIN Mb2661 [Mycobacterium bovis AF2122/97]
Length=120

 Score =  237 bits (605),  Expect = 4e-61, Method: Compositional matrix adjust.
 Identities = 118/120 (99%), Positives = 118/120 (99%), Gaps = 0/120 (0%)

Query  1    MSTQRPRHSGIRAVGPYAWAGRCGRIGRWGVHQEAMMNLAIWHPRKVQSATIYQVTDRSH  60
            MSTQRPRHSGIRAVGPYAWAGRCGRIGRWGVHQEAMMNLAIWHPRKVQSATIYQVTDR H
Sbjct  1    MSTQRPRHSGIRAVGPYAWAGRCGRIGRWGVHQEAMMNLAIWHPRKVQSATIYQVTDRLH  60

Query  61   DGRTARVPGDEITSTVSGWLSELGTQSPLADELARAVRIGDWPAAYAIGEHLSVEIAVAV  120
            DGRTARV GDEITSTVSGWLSELGTQSPLADELARAVRIGDWPAAYAIGEHLSVEIAVAV
Sbjct  61   DGRTARVRGDEITSTVSGWLSELGTQSPLADELARAVRIGDWPAAYAIGEHLSVEIAVAV  120


>gi|308232194|ref|ZP_07415243.2| hypothetical protein TMAG_02437 [Mycobacterium tuberculosis SUMu001]
 gi|308369805|ref|ZP_07419144.2| hypothetical protein TMBG_02766 [Mycobacterium tuberculosis SUMu002]
 gi|308371076|ref|ZP_07423755.2| hypothetical protein TMCG_01876 [Mycobacterium tuberculosis SUMu003]
 22 more sequence titles
 gi|308372351|ref|ZP_07428355.2| hypothetical protein TMDG_00346 [Mycobacterium tuberculosis SUMu004]
 gi|308373461|ref|ZP_07432416.2| hypothetical protein TMEG_03308 [Mycobacterium tuberculosis SUMu005]
 gi|308374640|ref|ZP_07436831.2| hypothetical protein TMFG_03875 [Mycobacterium tuberculosis SUMu006]
 gi|308375535|ref|ZP_07444237.2| hypothetical protein TMGG_02242 [Mycobacterium tuberculosis SUMu007]
 gi|308377071|ref|ZP_07441059.2| hypothetical protein TMHG_01825 [Mycobacterium tuberculosis SUMu008]
 gi|308378039|ref|ZP_07481341.2| hypothetical protein TMIG_03959 [Mycobacterium tuberculosis SUMu009]
 gi|308379261|ref|ZP_07485681.2| hypothetical protein TMJG_01611 [Mycobacterium tuberculosis SUMu010]
 gi|308380420|ref|ZP_07489900.2| hypothetical protein TMKG_03060 [Mycobacterium tuberculosis SUMu011]
 gi|308405865|ref|ZP_07494433.2| hypothetical protein TMLG_02359 [Mycobacterium tuberculosis SUMu012]
 gi|308214714|gb|EFO74113.1| hypothetical protein TMAG_02437 [Mycobacterium tuberculosis SUMu001]
 gi|308326362|gb|EFP15213.1| hypothetical protein TMBG_02766 [Mycobacterium tuberculosis SUMu002]
 gi|308329906|gb|EFP18757.1| hypothetical protein TMCG_01876 [Mycobacterium tuberculosis SUMu003]
 gi|308333520|gb|EFP22371.1| hypothetical protein TMDG_00346 [Mycobacterium tuberculosis SUMu004]
 gi|308337547|gb|EFP26398.1| hypothetical protein TMEG_03308 [Mycobacterium tuberculosis SUMu005]
 gi|308341214|gb|EFP30065.1| hypothetical protein TMFG_03875 [Mycobacterium tuberculosis SUMu006]
 gi|308346012|gb|EFP34863.1| hypothetical protein TMGG_02242 [Mycobacterium tuberculosis SUMu007]
 gi|308349021|gb|EFP37872.1| hypothetical protein TMHG_01825 [Mycobacterium tuberculosis SUMu008]
 gi|308353749|gb|EFP42600.1| hypothetical protein TMIG_03959 [Mycobacterium tuberculosis SUMu009]
 gi|308357589|gb|EFP46440.1| hypothetical protein TMJG_01611 [Mycobacterium tuberculosis SUMu010]
 gi|308361531|gb|EFP50382.1| hypothetical protein TMKG_03060 [Mycobacterium tuberculosis SUMu011]
 gi|308365144|gb|EFP53995.1| hypothetical protein TMLG_02359 [Mycobacterium tuberculosis SUMu012]
 gi|323718780|gb|EGB27938.1| hypothetical protein TMMG_02640 [Mycobacterium tuberculosis CDC1551A]
Length=90

 Score =  180 bits (457),  Expect = 6e-44, Method: Compositional matrix adjust.
 Identities = 89/90 (99%), Positives = 90/90 (100%), Gaps = 0/90 (0%)

Query  31   VHQEAMMNLAIWHPRKVQSATIYQVTDRSHDGRTARVPGDEITSTVSGWLSELGTQSPLA  90
            +HQEAMMNLAIWHPRKVQSATIYQVTDRSHDGRTARVPGDEITSTVSGWLSELGTQSPLA
Sbjct  1    MHQEAMMNLAIWHPRKVQSATIYQVTDRSHDGRTARVPGDEITSTVSGWLSELGTQSPLA  60

Query  91   DELARAVRIGDWPAAYAIGEHLSVEIAVAV  120
            DELARAVRIGDWPAAYAIGEHLSVEIAVAV
Sbjct  61   DELARAVRIGDWPAAYAIGEHLSVEIAVAV  90


>gi|240170621|ref|ZP_04749280.1| hypothetical protein MkanA1_15005 [Mycobacterium kansasii ATCC 
12478]
Length=82

 Score =  114 bits (285),  Expect = 4e-24, Method: Compositional matrix adjust.
 Identities = 56/83 (68%), Positives = 66/83 (80%), Gaps = 2/83 (2%)

Query  37   MNLAIWHPRKVQSATIYQVTDRSHDGRTARVPGDEITSTVSGWLSELGTQSPLADELARA  96
            MN AIW   KV   TIYQVTDR HDGRTARV  +EIT+TV+ WLSELG Q+PL D+LA A
Sbjct  1    MNAAIWRHHKV--TTIYQVTDRLHDGRTARVTANEITATVASWLSELGVQTPLVDDLACA  58

Query  97   VRIGDWPAAYAIGEHLSVEIAVA  119
            VR GDWP AYAIGE LS+++++A
Sbjct  59   VRTGDWPTAYAIGECLSIQVSIA  81


>gi|296169060|ref|ZP_06850720.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295896251|gb|EFG75912.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=107

 Score =  102 bits (253),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 52/90 (58%), Positives = 65/90 (73%), Gaps = 2/90 (2%)

Query  33   QEAMMNLAI--WHPRKVQSATIYQVTDRSHDGRTARVPGDEITSTVSGWLSELGTQSPLA  90
            +EA+M  A    H R V +AT+Y+VTDR H GRT RV G+EI   VS WL+ELG  SPL 
Sbjct  16   EEAVMRFATRRHHLRAVPAATMYRVTDRLHGGRTVRVSGNEIAPIVSAWLAELGAHSPLV  75

Query  91   DELARAVRIGDWPAAYAIGEHLSVEIAVAV  120
            +ELARA  +GDW AAYAIG+ LSV++ +AV
Sbjct  76   EELARAACVGDWSAAYAIGDQLSVDVVIAV  105


>gi|118462821|ref|YP_882685.1| hypothetical protein MAV_3503 [Mycobacterium avium 104]
 gi|118164108|gb|ABK65005.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=87

 Score = 99.0 bits (245),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 49/76 (65%), Positives = 60/76 (79%), Gaps = 0/76 (0%)

Query  44   PRKVQSATIYQVTDRSHDGRTARVPGDEITSTVSGWLSELGTQSPLADELARAVRIGDWP  103
            P++  +ATIYQ+TDR H G  ARVP  +IT+TVS WL++LG  SPL DEL RAVR GDW 
Sbjct  11   PQRKPTATIYQLTDRLHRGHVARVPAHQITATVSAWLADLGADSPLVDELERAVRGGDWA  70

Query  104  AAYAIGEHLSVEIAVA  119
            AA+A+GE LS+EIAVA
Sbjct  71   AAHALGECLSIEIAVA  86


>gi|254775954|ref|ZP_05217470.1| hypothetical protein MaviaA2_14960 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=81

 Score = 99.0 bits (245),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 49/76 (65%), Positives = 60/76 (79%), Gaps = 0/76 (0%)

Query  44   PRKVQSATIYQVTDRSHDGRTARVPGDEITSTVSGWLSELGTQSPLADELARAVRIGDWP  103
            P++  +ATIYQ+TDR H G  ARVP  +IT+TVS WL++LG  SPL DEL RAVR GDW 
Sbjct  5    PQRKPTATIYQLTDRLHRGHVARVPAHQITATVSAWLADLGADSPLVDELERAVRGGDWA  64

Query  104  AAYAIGEHLSVEIAVA  119
            AA+A+GE LS+EIAVA
Sbjct  65   AAHALGECLSIEIAVA  80


>gi|41408826|ref|NP_961662.1| hypothetical protein MAP2728 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41397185|gb|AAS05045.1| hypothetical protein MAP_2728 [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=87

 Score = 98.6 bits (244),  Expect = 3e-19, Method: Compositional matrix adjust.
 Identities = 49/76 (65%), Positives = 60/76 (79%), Gaps = 0/76 (0%)

Query  44   PRKVQSATIYQVTDRSHDGRTARVPGDEITSTVSGWLSELGTQSPLADELARAVRIGDWP  103
            P++  +ATIYQ+TDR H G  ARVP  +IT+TVS WL++LG  SPL DEL RAVR GDW 
Sbjct  11   PQRRPTATIYQLTDRLHRGHVARVPAHQITATVSAWLADLGADSPLVDELERAVRGGDWA  70

Query  104  AAYAIGEHLSVEIAVA  119
            AA+A+GE LS+EIAVA
Sbjct  71   AAHALGECLSIEIAVA  86


>gi|296170912|ref|ZP_06852449.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295894461|gb|EFG74205.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=87

 Score = 95.9 bits (237),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 46/71 (65%), Positives = 58/71 (82%), Gaps = 0/71 (0%)

Query  49   SATIYQVTDRSHDGRTARVPGDEITSTVSGWLSELGTQSPLADELARAVRIGDWPAAYAI  108
            +ATIYQ+TDR H+G  ARVP ++I +TVS WL+ELG  SPL D+L RAVR GDW AA+A+
Sbjct  16   AATIYQLTDRLHEGHVARVPANQIPATVSAWLAELGAHSPLVDDLERAVRGGDWSAAHAL  75

Query  109  GEHLSVEIAVA  119
            GE LS+EIA+A
Sbjct  76   GECLSIEIALA  86


>gi|254818991|ref|ZP_05223992.1| hypothetical protein MintA_03646 [Mycobacterium intracellulare 
ATCC 13950]
Length=87

 Score = 93.6 bits (231),  Expect = 8e-18, Method: Compositional matrix adjust.
 Identities = 47/76 (62%), Positives = 58/76 (77%), Gaps = 0/76 (0%)

Query  44   PRKVQSATIYQVTDRSHDGRTARVPGDEITSTVSGWLSELGTQSPLADELARAVRIGDWP  103
            P++  +ATIYQ+TDR H G  ARVP  +IT+TVS WL++LG  SPL DEL RAV  GDW 
Sbjct  11   PQRRPTATIYQLTDRLHRGHVARVPAHQITATVSAWLADLGADSPLVDELERAVCGGDWA  70

Query  104  AAYAIGEHLSVEIAVA  119
            AA+A+ E LS+EIAVA
Sbjct  71   AAHALSECLSIEIAVA  86


>gi|342858548|ref|ZP_08715203.1| hypothetical protein MCOL_06721 [Mycobacterium colombiense CECT 
3035]
 gi|342134252|gb|EGT87432.1| hypothetical protein MCOL_06721 [Mycobacterium colombiense CECT 
3035]
Length=87

 Score = 93.6 bits (231),  Expect = 9e-18, Method: Compositional matrix adjust.
 Identities = 46/76 (61%), Positives = 59/76 (78%), Gaps = 0/76 (0%)

Query  44   PRKVQSATIYQVTDRSHDGRTARVPGDEITSTVSGWLSELGTQSPLADELARAVRIGDWP  103
            P++  +ATIYQ+TDR H G+ ARVP  +IT+TV+ WL++LG  SPL DEL RAV  GDW 
Sbjct  11   PQRRPTATIYQLTDRLHKGQIARVPAHQITATVAAWLADLGADSPLVDELERAVCGGDWA  70

Query  104  AAYAIGEHLSVEIAVA  119
            AA+A+ E LS+EIAVA
Sbjct  71   AAHALSECLSIEIAVA  86


>gi|120402408|ref|YP_952237.1| hypothetical protein Mvan_1397 [Mycobacterium vanbaalenii PYR-1]
 gi|119955226|gb|ABM12231.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=85

 Score = 77.8 bits (190),  Expect = 6e-13, Method: Compositional matrix adjust.
 Identities = 38/66 (58%), Positives = 46/66 (70%), Gaps = 0/66 (0%)

Query  53   YQVTDRSHDGRTARVPGDEITSTVSGWLSELGTQSPLADELARAVRIGDWPAAYAIGEHL  112
            Y +TDR H  R+ RV  DEIT TVS WL +LG  S LAD+ AR VR GDW  A+A+ E L
Sbjct  18   YVLTDRLHRERSVRVTADEITVTVSSWLEQLGVHSALADDFARTVREGDWAGAHALAEAL  77

Query  113  SVEIAV  118
            SV++AV
Sbjct  78   SVDVAV  83


>gi|294993095|ref|ZP_06798786.1| hypothetical protein Mtub2_00940 [Mycobacterium tuberculosis 
210]
Length=32

 Score = 62.8 bits (151),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 31/32 (97%), Positives = 32/32 (100%), Gaps = 0/32 (0%)

Query  89   LADELARAVRIGDWPAAYAIGEHLSVEIAVAV  120
            +ADELARAVRIGDWPAAYAIGEHLSVEIAVAV
Sbjct  1    MADELARAVRIGDWPAAYAIGEHLSVEIAVAV  32


>gi|319791257|ref|YP_004152897.1| type VI secretion protein [Variovorax paradoxus EPS]
 gi|315593720|gb|ADU34786.1| type VI secretion protein, VC_A0111 family [Variovorax paradoxus 
EPS]
Length=360

 Score = 36.6 bits (83),  Expect = 1.2, Method: Compositional matrix adjust.
 Identities = 27/84 (33%), Positives = 39/84 (47%), Gaps = 11/84 (13%)

Query  1    MSTQRPRHSGIR-AVGPYAWAGRCGRIGRWGVHQEAMMNLAIWHPRKVQSATIYQVTDRS  59
            ++  RP     R  VG +   G  GRIGR  VH +A ++ + W  R+V +A   +   RS
Sbjct  149  VALDRPGEDRFRLQVGAFVGMGTPGRIGRDEVHDDARLHFSGWLARRVHNAESVESVLRS  208

Query  60   HDGRTA----------RVPGDEIT  73
            + G             RVP DE+T
Sbjct  209  YFGVPVTLERWVGHWMRVPSDEVT  232


>gi|158341517|ref|YP_001522681.1| hypothetical protein AM1_H0014 [Acaryochloris marina MBIC11017]
 gi|158311758|gb|ABW33367.1| hypothetical protein AM1_H0014 [Acaryochloris marina MBIC11017]
Length=74

 Score = 36.2 bits (82),  Expect = 1.7, Method: Compositional matrix adjust.
 Identities = 15/48 (32%), Positives = 24/48 (50%), Gaps = 0/48 (0%)

Query  53  YQVTDRSHDGRTARVPGDEITSTVSGWLSELGTQSPLADELARAVRIG  100
           YQ     H     R+P D+I   VS WL+E     P   +L+ ++++G
Sbjct  17  YQTDYGQHPDPCTRLPSDQILDRVSSWLAEFNPLLPPESQLSESIQVG  64


>gi|158339633|ref|YP_001521022.1| hypothetical protein AM1_A0372 [Acaryochloris marina MBIC11017]
 gi|158340441|ref|YP_001521797.1| hypothetical protein AM1_C0369 [Acaryochloris marina MBIC11017]
 gi|158309874|gb|ABW31490.1| hypothetical protein AM1_A0372 [Acaryochloris marina MBIC11017]
 gi|158310682|gb|ABW32296.1| hypothetical protein AM1_C0369 [Acaryochloris marina MBIC11017]
Length=69

 Score = 35.8 bits (81),  Expect = 2.0, Method: Compositional matrix adjust.
 Identities = 19/55 (35%), Positives = 27/55 (50%), Gaps = 1/55 (1%)

Query  47  VQSATIYQVTDR-SHDGRTARVPGDEITSTVSGWLSELGTQSPLADELARAVRIG  100
           ++ A IY  TD   H      +P D+I   V+ WLSE     P   E A ++R+G
Sbjct  10  IEQAWIYHQTDYGQHPDPCTGLPSDQILDRVASWLSEFNPLIPPESETALSIRVG  64



Lambda     K      H
   0.319    0.132    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128530997826


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40