BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2635

Length=80
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|167966584|ref|ZP_02548861.1|  hypothetical protein MtubH3_0033...   169    2e-40
gi|15609772|ref|NP_217151.1|  hypothetical protein Rv2635 [Mycoba...   166    1e-39
gi|340627656|ref|YP_004746108.1|  hypothetical protein MCAN_26811...   164    4e-39
gi|289570810|ref|ZP_06451037.1|  LOW QUALITY PROTEIN: hypothetica...   116    1e-24
gi|307942417|ref|ZP_07657768.1|  phage portal protein, lambda fam...  34.7    4.6  


>gi|167966584|ref|ZP_02548861.1| hypothetical protein MtubH3_00339 [Mycobacterium tuberculosis 
H37Ra]
Length=126

 Score =  169 bits (427),  Expect = 2e-40, Method: Compositional matrix adjust.
 Identities = 80/80 (100%), Positives = 80/80 (100%), Gaps = 0/80 (0%)

Query  1    MVAADHRALGSNKSYPASQTAEAIWPPARTLRYDRQSPWLATGFDRRMSQTVTGVGVQNC  60
            MVAADHRALGSNKSYPASQTAEAIWPPARTLRYDRQSPWLATGFDRRMSQTVTGVGVQNC
Sbjct  47   MVAADHRALGSNKSYPASQTAEAIWPPARTLRYDRQSPWLATGFDRRMSQTVTGVGVQNC  106

Query  61   AVSKRRCSAVDHSSRTPYRR  80
            AVSKRRCSAVDHSSRTPYRR
Sbjct  107  AVSKRRCSAVDHSSRTPYRR  126


>gi|15609772|ref|NP_217151.1| hypothetical protein Rv2635 [Mycobacterium tuberculosis H37Rv]
 gi|15842176|ref|NP_337213.1| hypothetical protein MT2713 [Mycobacterium tuberculosis CDC1551]
 gi|31793821|ref|NP_856314.1| hypothetical protein Mb2668 [Mycobacterium bovis AF2122/97]
 32 more sequence titles
 Length=80

 Score =  166 bits (420),  Expect = 1e-39, Method: Compositional matrix adjust.
 Identities = 80/80 (100%), Positives = 80/80 (100%), Gaps = 0/80 (0%)

Query  1   MVAADHRALGSNKSYPASQTAEAIWPPARTLRYDRQSPWLATGFDRRMSQTVTGVGVQNC  60
           MVAADHRALGSNKSYPASQTAEAIWPPARTLRYDRQSPWLATGFDRRMSQTVTGVGVQNC
Sbjct  1   MVAADHRALGSNKSYPASQTAEAIWPPARTLRYDRQSPWLATGFDRRMSQTVTGVGVQNC  60

Query  61  AVSKRRCSAVDHSSRTPYRR  80
           AVSKRRCSAVDHSSRTPYRR
Sbjct  61  AVSKRRCSAVDHSSRTPYRR  80


>gi|340627656|ref|YP_004746108.1| hypothetical protein MCAN_26811 [Mycobacterium canettii CIPT 
140010059]
 gi|340005846|emb|CCC45012.1| hypothetical protein MCAN_26811 [Mycobacterium canettii CIPT 
140010059]
Length=80

 Score =  164 bits (415),  Expect = 4e-39, Method: Compositional matrix adjust.
 Identities = 79/80 (99%), Positives = 79/80 (99%), Gaps = 0/80 (0%)

Query  1   MVAADHRALGSNKSYPASQTAEAIWPPARTLRYDRQSPWLATGFDRRMSQTVTGVGVQNC  60
           MVAADHRALGSNKSYPASQTAEAIWPPARTLRYDRQSPWLATGFDRRM QTVTGVGVQNC
Sbjct  1   MVAADHRALGSNKSYPASQTAEAIWPPARTLRYDRQSPWLATGFDRRMGQTVTGVGVQNC  60

Query  61  AVSKRRCSAVDHSSRTPYRR  80
           AVSKRRCSAVDHSSRTPYRR
Sbjct  61  AVSKRRCSAVDHSSRTPYRR  80


>gi|289570810|ref|ZP_06451037.1| LOW QUALITY PROTEIN: hypothetical protein TBJG_04224 [Mycobacterium 
tuberculosis T17]
 gi|289544564|gb|EFD48212.1| LOW QUALITY PROTEIN: hypothetical protein TBJG_04224 [Mycobacterium 
tuberculosis T17]
Length=55

 Score =  116 bits (290),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 55/55 (100%), Positives = 55/55 (100%), Gaps = 0/55 (0%)

Query  1   MVAADHRALGSNKSYPASQTAEAIWPPARTLRYDRQSPWLATGFDRRMSQTVTGV  55
           MVAADHRALGSNKSYPASQTAEAIWPPARTLRYDRQSPWLATGFDRRMSQTVTGV
Sbjct  1   MVAADHRALGSNKSYPASQTAEAIWPPARTLRYDRQSPWLATGFDRRMSQTVTGV  55


>gi|307942417|ref|ZP_07657768.1| phage portal protein, lambda family [Roseibium sp. TrichSKD4]
 gi|307774703|gb|EFO33913.1| phage portal protein, lambda family [Roseibium sp. TrichSKD4]
Length=546

 Score = 34.7 bits (78),  Expect = 4.6, Method: Compositional matrix adjust.
 Identities = 17/45 (38%), Positives = 24/45 (54%), Gaps = 6/45 (13%)

Query  16  PASQTAEAIWPP------ARTLRYDRQSPWLATGFDRRMSQTVTG  54
           P  Q+A+A W P      AR    DR  PW+++G DR++   V G
Sbjct  43  PGLQSADADWLPNRDGAVARIRDLDRNDPWVSSGIDRQVDMLVGG  87



Lambda     K      H
   0.319    0.126    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128850890930


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40