BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2639c
Length=110
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609776|ref|NP_217155.1| hypothetical protein Rv2639c [Mycob... 211 3e-53
gi|289553572|ref|ZP_06442782.1| conserved membrane protein [Myco... 208 2e-52
gi|296165055|ref|ZP_06847609.1| YnfA family protein [Mycobacteri... 201 3e-50
gi|296165919|ref|ZP_06848395.1| YnfA family protein [Mycobacteri... 182 1e-44
gi|183982963|ref|YP_001851254.1| hypothetical protein MMAR_2961 ... 180 5e-44
gi|257054597|ref|YP_003132429.1| hypothetical protein Svir_05280... 178 2e-43
gi|326331471|ref|ZP_08197761.1| membrane protein [Nocardioidacea... 177 3e-43
gi|328883210|emb|CCA56449.1| Conserved hypothetical protein [Str... 177 4e-43
gi|229819164|ref|YP_002880690.1| hypothetical protein Bcav_0666 ... 177 4e-43
gi|333990762|ref|YP_004523376.1| hypothetical protein JDM601_212... 177 6e-43
gi|116662119|ref|YP_829174.1| hypothetical protein Arth_4423 [Ar... 176 1e-42
gi|166214995|sp|A0AW23.2|Y4423_ARTS2 RecName: Full=UPF0060 membr... 176 1e-42
gi|169629683|ref|YP_001703332.1| hypothetical protein MAB_2597 [... 175 2e-42
gi|336118627|ref|YP_004573396.1| hypothetical protein MLP_29790 ... 174 3e-42
gi|119714257|ref|YP_919399.1| hypothetical protein Noca_4957 [No... 174 3e-42
gi|226349587|ref|YP_002776701.1| hypothetical membrane protein [... 174 5e-42
gi|271962285|ref|YP_003336481.1| hypothetical protein Sros_0715 ... 173 9e-42
gi|300784742|ref|YP_003765033.1| hypothetical protein AMED_2837 ... 172 1e-41
gi|134102070|ref|YP_001107731.1| hypothetical protein SACE_5620 ... 172 1e-41
gi|320010147|gb|ADW04997.1| protein of unknown function UPF0060 ... 172 2e-41
gi|119717029|ref|YP_923994.1| hypothetical protein Noca_2805 [No... 172 2e-41
gi|116662407|ref|YP_829460.1| hypothetical protein Arth_4238 [Ar... 171 2e-41
gi|258651059|ref|YP_003200215.1| hypothetical protein Namu_0815 ... 171 3e-41
gi|284990662|ref|YP_003409216.1| hypothetical protein Gobs_2162 ... 170 5e-41
gi|326383878|ref|ZP_08205562.1| hypothetical protein SCNU_13123 ... 169 1e-40
gi|302543485|ref|ZP_07295827.1| YnfA family protein [Streptomyce... 168 2e-40
gi|119963898|ref|YP_949833.1| hypothetical protein AAur_4166 [Ar... 167 4e-40
gi|302521108|ref|ZP_07273450.1| membrane protein [Streptomyces s... 167 5e-40
gi|297159442|gb|ADI09154.1| hypothetical protein SBI_06034 [Stre... 167 5e-40
gi|297201507|ref|ZP_06918904.1| membrane protein [Streptomyces s... 167 5e-40
gi|333025205|ref|ZP_08453269.1| hypothetical protein STTU_2709 [... 166 7e-40
gi|256825294|ref|YP_003149254.1| hypothetical protein Ksed_14640... 166 1e-39
gi|220913974|ref|YP_002489283.1| hypothetical protein Achl_3233 ... 166 1e-39
gi|254393898|ref|ZP_05009001.1| membrane protein [Streptomyces c... 166 1e-39
gi|312141553|ref|YP_004008889.1| integral membrane protein [Rhod... 166 1e-39
gi|295837189|ref|ZP_06824122.1| membrane protein [Streptomyces s... 165 2e-39
gi|145223714|ref|YP_001134392.1| hypothetical protein Mflv_3127 ... 165 2e-39
gi|111023568|ref|YP_706540.1| hypothetical protein RHA1_ro06609 ... 165 2e-39
gi|296268007|ref|YP_003650639.1| hypothetical protein Tbis_0009 ... 165 2e-39
gi|120404379|ref|YP_954208.1| hypothetical protein Mvan_3406 [My... 164 3e-39
gi|296131297|ref|YP_003638547.1| hypothetical protein Cfla_3474 ... 164 5e-39
gi|118468777|ref|YP_887563.1| hypothetical protein MSMEG_3252 [M... 163 7e-39
gi|345008422|ref|YP_004810776.1| membrane protein ynfA [Streptom... 163 8e-39
gi|239991549|ref|ZP_04712213.1| hypothetical protein SrosN1_2987... 163 8e-39
gi|337764901|emb|CCB73610.1| putative membrane protein [Streptom... 163 8e-39
gi|271968821|ref|YP_003343017.1| membrane protein [Streptosporan... 163 1e-38
gi|289770992|ref|ZP_06530370.1| UPF0060 membrane protein [Strept... 163 1e-38
gi|29831299|ref|NP_825933.1| hypothetical protein SAV_4756 [Stre... 162 1e-38
gi|226366053|ref|YP_002783836.1| hypothetical protein ROP_66440 ... 162 2e-38
gi|334335709|ref|YP_004540861.1| UPF0060 membrane protein ynfA [... 162 2e-38
>gi|15609776|ref|NP_217155.1| hypothetical protein Rv2639c [Mycobacterium tuberculosis H37Rv]
gi|15842180|ref|NP_337217.1| hypothetical protein MT2717 [Mycobacterium tuberculosis CDC1551]
gi|31793825|ref|NP_856318.1| hypothetical protein Mb2672c [Mycobacterium bovis AF2122/97]
82 more sequence titles
Length=110
Score = 211 bits (537), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 110/110 (100%), Positives = 110/110 (100%), Gaps = 0/110 (0%)
Query 1 MVVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGR 60
MVVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGR
Sbjct 1 MVVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGR 60
Query 61 VLAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPRGH 110
VLAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPRGH
Sbjct 61 VLAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPRGH 110
>gi|289553572|ref|ZP_06442782.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605]
gi|289438204|gb|EFD20697.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605]
Length=109
Score = 208 bits (529), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 108/109 (99%), Positives = 109/109 (100%), Gaps = 0/109 (0%)
Query 2 VVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGRV 61
+VRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGRV
Sbjct 1 MVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGRV 60
Query 62 LAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPRGH 110
LAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPRGH
Sbjct 61 LAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPRGH 109
>gi|296165055|ref|ZP_06847609.1| YnfA family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295899587|gb|EFG79039.1| YnfA family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=110
Score = 201 bits (511), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 103/110 (94%), Positives = 106/110 (97%), Gaps = 0/110 (0%)
Query 1 MVVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGR 60
MV RSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALG+YGF ATLQPDAHFGR
Sbjct 1 MVARSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGMYGFVATLQPDAHFGR 60
Query 61 VLAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPRGH 110
+LAAYGGVFVAGSLAWGMALDGFRPDRWDVIGAL C+ GVAVIMYAPRGH
Sbjct 61 ILAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALACLVGVAVIMYAPRGH 110
>gi|296165919|ref|ZP_06848395.1| YnfA family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295898727|gb|EFG78257.1| YnfA family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=109
Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 93/109 (86%), Positives = 99/109 (91%), Gaps = 0/109 (0%)
Query 1 MVVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGR 60
M VRS+LLFV+AAVAEIGGAWLVWQGVRE RG W G GVIALG+YGF ATLQPDAHFGR
Sbjct 1 MAVRSVLLFVVAAVAEIGGAWLVWQGVREHRGLAWVGAGVIALGLYGFVATLQPDAHFGR 60
Query 61 VLAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPRG 109
+LAAYGGVFVAGSLAWGMA DGFRPDRWDVIGAL C+AGV +IMYAPRG
Sbjct 61 ILAAYGGVFVAGSLAWGMAFDGFRPDRWDVIGALVCLAGVTIIMYAPRG 109
>gi|183982963|ref|YP_001851254.1| hypothetical protein MMAR_2961 [Mycobacterium marinum M]
gi|238689233|sp|B2HEY1.1|Y2961_MYCMM RecName: Full=UPF0060 membrane protein MMAR_2961
gi|183176289|gb|ACC41399.1| conserved hypothetical membrane protein [Mycobacterium marinum
M]
Length=110
Score = 180 bits (457), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 91/110 (83%), Positives = 99/110 (90%), Gaps = 0/110 (0%)
Query 1 MVVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGR 60
MVVRSILLF++AAVAEIGGAWLVWQGVREQRG W G GVIALG+YGF ATLQPDAHFGR
Sbjct 1 MVVRSILLFIVAAVAEIGGAWLVWQGVREQRGLAWIGAGVIALGLYGFVATLQPDAHFGR 60
Query 61 VLAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPRGH 110
+LAAYGG+FVAGSL WGMA DGFRPDR D++GAL C+AGV VIMYAPR H
Sbjct 61 ILAAYGGIFVAGSLLWGMAFDGFRPDRADIVGALVCLAGVGVIMYAPRAH 110
>gi|257054597|ref|YP_003132429.1| hypothetical protein Svir_05280 [Saccharomonospora viridis DSM
43017]
gi|256584469|gb|ACU95602.1| uncharacterized conserved protein [Saccharomonospora viridis
DSM 43017]
Length=110
Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/109 (82%), Positives = 101/109 (93%), Gaps = 0/109 (0%)
Query 1 MVVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGR 60
+V+RSI+LFVLAA+AEIGGAWLVWQG+RE RGW+W G GVIALG+YGF ATLQPDAHFGR
Sbjct 2 LVLRSIVLFVLAALAEIGGAWLVWQGIREHRGWIWIGAGVIALGLYGFVATLQPDAHFGR 61
Query 61 VLAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPRG 109
+LAAYGGVFVAGSL WGM +DG+RPDR+DVIGAL C+ GVAVIMYAPRG
Sbjct 62 ILAAYGGVFVAGSLVWGMVVDGYRPDRFDVIGALICLLGVAVIMYAPRG 110
>gi|326331471|ref|ZP_08197761.1| membrane protein [Nocardioidaceae bacterium Broad-1]
gi|325950727|gb|EGD42777.1| membrane protein [Nocardioidaceae bacterium Broad-1]
Length=111
Score = 177 bits (450), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 89/106 (84%), Positives = 97/106 (92%), Gaps = 0/106 (0%)
Query 3 VRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGRVL 62
+RSI LFV AAVAEIGGAWLVWQGVRE +GW+W G GVIALG+YGF ATLQPDAHFGR+L
Sbjct 4 LRSIALFVAAAVAEIGGAWLVWQGVRENKGWVWIGAGVIALGIYGFVATLQPDAHFGRIL 63
Query 63 AAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPR 108
AAYGGVFVAGSLAWGMALDGFRPDR+DV GAL C+ GVAVIMY+PR
Sbjct 64 AAYGGVFVAGSLAWGMALDGFRPDRYDVTGALICLVGVAVIMYSPR 109
>gi|328883210|emb|CCA56449.1| Conserved hypothetical protein [Streptomyces venezuelae ATCC
10712]
Length=111
Score = 177 bits (450), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 90/110 (82%), Positives = 98/110 (90%), Gaps = 0/110 (0%)
Query 1 MVVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGR 60
+ RSI LFVLAA+ EIGGAWLVWQGVRE RGW+W G GV+ALGVYGF ATLQPDA FGR
Sbjct 2 LTARSIALFVLAALFEIGGAWLVWQGVREHRGWIWIGTGVLALGVYGFVATLQPDAEFGR 61
Query 61 VLAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPRGH 110
VLAAYGGVFVAGS+AWGMA DG+RPDRWDVIGAL C+AG+AVIMYAPRG
Sbjct 62 VLAAYGGVFVAGSIAWGMAADGYRPDRWDVIGALVCLAGMAVIMYAPRGR 111
>gi|229819164|ref|YP_002880690.1| hypothetical protein Bcav_0666 [Beutenbergia cavernae DSM 12333]
gi|229565077|gb|ACQ78928.1| protein of unknown function UPF0060 [Beutenbergia cavernae DSM
12333]
Length=111
Score = 177 bits (449), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 87/107 (82%), Positives = 98/107 (92%), Gaps = 0/107 (0%)
Query 2 VVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGRV 61
+ RSI+LFV AA+ EIGGAWLVWQGVRE +GW+W G GV+ALG+YGFFATLQPDAHFGR+
Sbjct 3 LTRSIILFVAAALFEIGGAWLVWQGVREHKGWIWIGAGVVALGLYGFFATLQPDAHFGRI 62
Query 62 LAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPR 108
LAAYGGVFV GSLAWGM +DGFRPDRWDV+GAL C+AGVAVIMYAPR
Sbjct 63 LAAYGGVFVVGSLAWGMVVDGFRPDRWDVVGALLCLAGVAVIMYAPR 109
>gi|333990762|ref|YP_004523376.1| hypothetical protein JDM601_2122 [Mycobacterium sp. JDM601]
gi|333486730|gb|AEF36122.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=108
Score = 177 bits (448), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 92/108 (86%), Positives = 97/108 (90%), Gaps = 0/108 (0%)
Query 1 MVVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGR 60
MV+RSI LFVLAAVAEIGGAWLVWQGVRE RG LWAG GVIALG+YGF ATLQPDAHFGR
Sbjct 1 MVLRSIALFVLAAVAEIGGAWLVWQGVREHRGLLWAGAGVIALGLYGFVATLQPDAHFGR 60
Query 61 VLAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPR 108
+LAAYGGVFVAGSLAWGMA DGFRPDR DV+GAL C+ GV VIMY PR
Sbjct 61 ILAAYGGVFVAGSLAWGMAFDGFRPDRADVLGALICLLGVGVIMYTPR 108
>gi|116662119|ref|YP_829174.1| hypothetical protein Arth_4423 [Arthrobacter sp. FB24]
gi|116612871|gb|ABK05593.1| protein of unknown function UPF0060 [Arthrobacter sp. FB24]
Length=117
Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/108 (80%), Positives = 97/108 (90%), Gaps = 0/108 (0%)
Query 2 VVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGRV 61
+ +S+LLF+LAAVAEIGGAWLVWQ VRE R W WAGLG+IALG+YGF ATLQPDAHFGR+
Sbjct 7 IAKSVLLFILAAVAEIGGAWLVWQAVREGRAWWWAGLGIIALGLYGFVATLQPDAHFGRI 66
Query 62 LAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPRG 109
LAAYGGVFVAGSL WGM DGFRPDRWDVIG++ C+ GVAVIM+APRG
Sbjct 67 LAAYGGVFVAGSLVWGMVFDGFRPDRWDVIGSVICLVGVAVIMFAPRG 114
>gi|166214995|sp|A0AW23.2|Y4423_ARTS2 RecName: Full=UPF0060 membrane protein Arth_4423
Length=113
Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/108 (80%), Positives = 97/108 (90%), Gaps = 0/108 (0%)
Query 2 VVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGRV 61
+ +S+LLF+LAAVAEIGGAWLVWQ VRE R W WAGLG+IALG+YGF ATLQPDAHFGR+
Sbjct 3 IAKSVLLFILAAVAEIGGAWLVWQAVREGRAWWWAGLGIIALGLYGFVATLQPDAHFGRI 62
Query 62 LAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPRG 109
LAAYGGVFVAGSL WGM DGFRPDRWDVIG++ C+ GVAVIM+APRG
Sbjct 63 LAAYGGVFVAGSLVWGMVFDGFRPDRWDVIGSVICLVGVAVIMFAPRG 110
>gi|169629683|ref|YP_001703332.1| hypothetical protein MAB_2597 [Mycobacterium abscessus ATCC 19977]
gi|169241650|emb|CAM62678.1| Conserved hypothetical membrane protein [Mycobacterium abscessus]
Length=111
Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 88/108 (82%), Positives = 94/108 (88%), Gaps = 0/108 (0%)
Query 1 MVVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGR 60
+V +SILLF AAV EIGGAWLVWQGVRE RGW W GLG IALG YGF ATLQPDAHFGR
Sbjct 2 LVAKSILLFTAAAVLEIGGAWLVWQGVREHRGWAWMGLGAIALGAYGFVATLQPDAHFGR 61
Query 61 VLAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPR 108
+LAAYGG+FVAGSL WG+ALDGFRPDRWDVIGAL C+AGV VIMY PR
Sbjct 62 ILAAYGGIFVAGSLLWGIALDGFRPDRWDVIGALVCLAGVGVIMYMPR 109
>gi|336118627|ref|YP_004573396.1| hypothetical protein MLP_29790 [Microlunatus phosphovorus NM-1]
gi|334686408|dbj|BAK35993.1| hypothetical protein MLP_29790 [Microlunatus phosphovorus NM-1]
Length=112
Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 87/107 (82%), Positives = 96/107 (90%), Gaps = 0/107 (0%)
Query 2 VVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGRV 61
++RSI LFVLAA+AEIGGAWLVWQGVRE RGW+W G GVIALG+YGF ATLQPDAHFGR+
Sbjct 3 ILRSIGLFVLAAIAEIGGAWLVWQGVREHRGWIWIGAGVIALGLYGFVATLQPDAHFGRI 62
Query 62 LAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPR 108
LAAYGGVFVAGSL WGM DGFRPDRWD+ GAL C+ GVA+IMYAPR
Sbjct 63 LAAYGGVFVAGSLVWGMVADGFRPDRWDIAGALVCLVGVALIMYAPR 109
>gi|119714257|ref|YP_919399.1| hypothetical protein Noca_4957 [Nocardioides sp. JS614]
gi|119526166|gb|ABL79536.1| protein of unknown function UPF0060 [Nocardioides sp. JS614]
Length=111
Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 87/107 (82%), Positives = 96/107 (90%), Gaps = 0/107 (0%)
Query 2 VVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGRV 61
++RSI LFV+AAVAEIGGAWLVWQGVRE RG W G GVIALG+YGF AT QPDAHFGR+
Sbjct 3 ILRSITLFVVAAVAEIGGAWLVWQGVRESRGLAWMGAGVIALGIYGFVATFQPDAHFGRI 62
Query 62 LAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPR 108
LAAYGGVFVAGSLAWGMALDGF+PDRWD+ GAL C+ GVA+IMYAPR
Sbjct 63 LAAYGGVFVAGSLAWGMALDGFKPDRWDIAGALVCLLGVAIIMYAPR 109
>gi|226349587|ref|YP_002776701.1| hypothetical membrane protein [Rhodococcus opacus B4]
gi|226245502|dbj|BAH55849.1| hypothetical membrane protein [Rhodococcus opacus B4]
Length=109
Score = 174 bits (440), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 87/107 (82%), Positives = 96/107 (90%), Gaps = 0/107 (0%)
Query 2 VVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGRV 61
V RS+ LFVLAA+ EIGGAWLVWQGVREQRGWLWAG G +ALG YGF ATLQPDA+FGR+
Sbjct 3 VARSVALFVLAAIFEIGGAWLVWQGVREQRGWLWAGFGALALGAYGFVATLQPDANFGRI 62
Query 62 LAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPR 108
LAAYGGVFVAGSL WGMALDGFRPDR+DV GAL C+ G+AVIMY+PR
Sbjct 63 LAAYGGVFVAGSLLWGMALDGFRPDRFDVTGALICLVGLAVIMYSPR 109
>gi|271962285|ref|YP_003336481.1| hypothetical protein Sros_0715 [Streptosporangium roseum DSM
43021]
gi|270505460|gb|ACZ83738.1| conserved hypothetical protein [Streptosporangium roseum DSM
43021]
Length=109
Score = 173 bits (438), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 86/107 (81%), Positives = 98/107 (92%), Gaps = 0/107 (0%)
Query 2 VVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGRV 61
V RS+LLFV+AA+AEIGGAWLVWQGVREQRG LW G G+IALG+YGF AT+QPDA+FGR+
Sbjct 3 VARSLLLFVVAALAEIGGAWLVWQGVREQRGLLWVGAGIIALGLYGFVATVQPDANFGRI 62
Query 62 LAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPR 108
LAAYGG+FVAGSLAWGM +DGF PDRWDVIGA+ C+ GVAVIMYAPR
Sbjct 63 LAAYGGIFVAGSLAWGMLIDGFHPDRWDVIGAVVCLIGVAVIMYAPR 109
>gi|300784742|ref|YP_003765033.1| hypothetical protein AMED_2837 [Amycolatopsis mediterranei U32]
gi|299794256|gb|ADJ44631.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
gi|340526166|gb|AEK41371.1| hypothetical protein RAM_14415 [Amycolatopsis mediterranei S699]
Length=110
Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/108 (81%), Positives = 98/108 (91%), Gaps = 0/108 (0%)
Query 1 MVVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGR 60
MV+RSI+LF+ AAV EIGGAWL+WQG+RE RG LW G GV+ALGVYGF ATLQPDAHFGR
Sbjct 1 MVLRSIVLFLAAAVCEIGGAWLIWQGIREHRGLLWIGGGVVALGVYGFVATLQPDAHFGR 60
Query 61 VLAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPR 108
+LAAYGGVFVAGSLAWG+ DG+RPDR+DVIGAL C+AGVAVIMYAPR
Sbjct 61 ILAAYGGVFVAGSLAWGVVADGYRPDRYDVIGALLCLAGVAVIMYAPR 108
>gi|134102070|ref|YP_001107731.1| hypothetical protein SACE_5620 [Saccharopolyspora erythraea NRRL
2338]
gi|291004895|ref|ZP_06562868.1| hypothetical protein SeryN2_10277 [Saccharopolyspora erythraea
NRRL 2338]
gi|172044131|sp|A4FL81.1|Y5620_SACEN RecName: Full=UPF0060 membrane protein SACE_5620
gi|133914693|emb|CAM04806.1| protein of unknown function UPF0060 [Saccharopolyspora erythraea
NRRL 2338]
Length=110
Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 86/108 (80%), Positives = 98/108 (91%), Gaps = 0/108 (0%)
Query 1 MVVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGR 60
+++RS++LFVLAAVAEIGGAWLVWQGVREQRG LW G GVIALG+YGF AT QPD +FGR
Sbjct 3 VILRSVVLFVLAAVAEIGGAWLVWQGVREQRGLLWIGAGVIALGIYGFVATFQPDPNFGR 62
Query 61 VLAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPR 108
+LAAYGGVFVAGSL WG+ +DGFRPDRWD+IGA C+AGVAVIMYAPR
Sbjct 63 ILAAYGGVFVAGSLLWGVVVDGFRPDRWDLIGATICLAGVAVIMYAPR 110
>gi|320010147|gb|ADW04997.1| protein of unknown function UPF0060 [Streptomyces flavogriseus
ATCC 33331]
Length=111
Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/110 (79%), Positives = 96/110 (88%), Gaps = 0/110 (0%)
Query 1 MVVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGR 60
+V RS+ LFV+AA+ EIGGAWLVWQGVRE RGW+W G GVIALG YGF ATLQPD FGR
Sbjct 2 LVARSLALFVVAALFEIGGAWLVWQGVREHRGWIWIGAGVIALGAYGFVATLQPDGDFGR 61
Query 61 VLAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPRGH 110
VLAAYGGVFVAGS+AWGMA DG+RPDRWDV GAL C+AG+A+IMYAPR H
Sbjct 62 VLAAYGGVFVAGSIAWGMAADGYRPDRWDVTGALICLAGMALIMYAPRNH 111
>gi|119717029|ref|YP_923994.1| hypothetical protein Noca_2805 [Nocardioides sp. JS614]
gi|119537690|gb|ABL82307.1| protein of unknown function UPF0060 [Nocardioides sp. JS614]
Length=111
Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/107 (81%), Positives = 97/107 (91%), Gaps = 0/107 (0%)
Query 2 VVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGRV 61
V RS++LFV AA+AEIGGAWLVWQGVRE RGW++AGLGV+ALG YGF ATLQPDA FGR+
Sbjct 3 VARSLILFVAAALAEIGGAWLVWQGVREHRGWVYAGLGVVALGSYGFVATLQPDASFGRI 62
Query 62 LAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPR 108
LAAYGGVFVAGSLAWGM +DGFRPDR+DVIGA+ C+ GV VIMYAPR
Sbjct 63 LAAYGGVFVAGSLAWGMVVDGFRPDRYDVIGAVVCLVGVGVIMYAPR 109
>gi|116662407|ref|YP_829460.1| hypothetical protein Arth_4238 [Arthrobacter sp. FB24]
gi|123466830|sp|A0AWV9.1|Y4238_ARTS2 RecName: Full=UPF0060 membrane protein Arth_4238
gi|116613186|gb|ABK05879.1| protein of unknown function UPF0060 [Arthrobacter sp. FB24]
Length=112
Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/108 (79%), Positives = 96/108 (89%), Gaps = 0/108 (0%)
Query 2 VVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGRV 61
+ ++ILLFVLAA AEIGGAWLVWQ VRE + W WAGLGV+ALGVYGF ATLQPDAHFGR+
Sbjct 3 IAKTILLFVLAAAAEIGGAWLVWQAVREGKEWWWAGLGVLALGVYGFAATLQPDAHFGRI 62
Query 62 LAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPRG 109
LAAYGGVFVAGSLAWGM DGFRPDRWD+IG++ C+ GVAVIM+APR
Sbjct 63 LAAYGGVFVAGSLAWGMVFDGFRPDRWDIIGSVICLLGVAVIMFAPRN 110
>gi|258651059|ref|YP_003200215.1| hypothetical protein Namu_0815 [Nakamurella multipartita DSM
44233]
gi|258554284|gb|ACV77226.1| protein of unknown function UPF0060 [Nakamurella multipartita
DSM 44233]
Length=111
Score = 171 bits (433), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 87/107 (82%), Positives = 94/107 (88%), Gaps = 0/107 (0%)
Query 2 VVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGRV 61
V RSI LFVLAAVAEIGGAWL+WQGVRE RG LW G GVIALG+YGF ATLQPDA+FGR+
Sbjct 3 VARSIALFVLAAVAEIGGAWLIWQGVREHRGLLWVGAGVIALGLYGFVATLQPDANFGRI 62
Query 62 LAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPR 108
LAAYGGVFVAGSL WGM +D FRPDRWD+IGA C+ GVAVIMYAPR
Sbjct 63 LAAYGGVFVAGSLVWGMVVDKFRPDRWDLIGAAVCLVGVAVIMYAPR 109
>gi|284990662|ref|YP_003409216.1| hypothetical protein Gobs_2162 [Geodermatophilus obscurus DSM
43160]
gi|284063907|gb|ADB74845.1| protein of unknown function UPF0060 [Geodermatophilus obscurus
DSM 43160]
Length=113
Score = 170 bits (431), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 88/108 (82%), Positives = 95/108 (88%), Gaps = 0/108 (0%)
Query 1 MVVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGR 60
+V RSI LF+ AAV EIGGAW VWQGVRE RGWLW GLGV ALG YGF ATLQPDA FGR
Sbjct 2 LVARSIALFLAAAVLEIGGAWFVWQGVREHRGWLWIGLGVAALGAYGFVATLQPDAAFGR 61
Query 61 VLAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPR 108
+LAAYGGVFVAGSLAWGMALDG+RPDR+DV+GAL C+ GVAVIMYAPR
Sbjct 62 ILAAYGGVFVAGSLAWGMALDGYRPDRFDVLGALICLLGVAVIMYAPR 109
>gi|326383878|ref|ZP_08205562.1| hypothetical protein SCNU_13123 [Gordonia neofelifaecis NRRL
B-59395]
gi|326197337|gb|EGD54527.1| hypothetical protein SCNU_13123 [Gordonia neofelifaecis NRRL
B-59395]
Length=111
Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 82/107 (77%), Positives = 92/107 (86%), Gaps = 0/107 (0%)
Query 2 VVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGRV 61
V RS++LF LAA AEIGGAWL+WQG+RE RGWLW G GV ALGVYGF ATLQPDA FGR+
Sbjct 3 VTRSLILFALAAFAEIGGAWLIWQGIREHRGWLWVGAGVAALGVYGFVATLQPDAEFGRI 62
Query 62 LAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPR 108
LAAYGG+F+AGSL WGM DG+RPDRWDVIGAL C+ GVA+IMY PR
Sbjct 63 LAAYGGIFIAGSLLWGMIADGYRPDRWDVIGALICLVGVAIIMYMPR 109
>gi|302543485|ref|ZP_07295827.1| YnfA family protein [Streptomyces hygroscopicus ATCC 53653]
gi|302461103|gb|EFL24196.1| YnfA family protein [Streptomyces himastatinicus ATCC 53653]
Length=110
Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 84/108 (78%), Positives = 95/108 (88%), Gaps = 0/108 (0%)
Query 1 MVVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGR 60
++ RS+ LFVLAA+ EIGGAWLVWQGVRE RGW W G G++ALG YGF ATLQPDA+FGR
Sbjct 2 LIARSVSLFVLAALLEIGGAWLVWQGVREHRGWAWIGAGIVALGAYGFVATLQPDANFGR 61
Query 61 VLAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPR 108
+LAAYGGVFVAGSLAWGM D +RPDR+DVIGAL C+AGVAVIMYAPR
Sbjct 62 ILAAYGGVFVAGSLAWGMVADDYRPDRFDVIGALICLAGVAVIMYAPR 109
>gi|119963898|ref|YP_949833.1| hypothetical protein AAur_4166 [Arthrobacter aurescens TC1]
gi|166227230|sp|A1RC71.1|Y4166_ARTAT RecName: Full=UPF0060 membrane protein AAur_4166
gi|119950757|gb|ABM09668.1| conserved hypothetical protein [Arthrobacter aurescens TC1]
Length=112
Score = 167 bits (424), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 81/107 (76%), Positives = 94/107 (88%), Gaps = 0/107 (0%)
Query 2 VVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGRV 61
++++ +LFVLAAVAEIGGAWL+WQ VRE + W WAGLGV+ALG+YGFFA QPDAHFGRV
Sbjct 3 ILKTTILFVLAAVAEIGGAWLIWQAVREGKAWWWAGLGVVALGIYGFFAAFQPDAHFGRV 62
Query 62 LAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPR 108
LAAYGGVF+AGSL WGM +DGFRPDRWDVIGA C+ GV VIM+APR
Sbjct 63 LAAYGGVFIAGSLGWGMLMDGFRPDRWDVIGAAICIVGVGVIMFAPR 109
>gi|302521108|ref|ZP_07273450.1| membrane protein [Streptomyces sp. SPB78]
gi|318058003|ref|ZP_07976726.1| hypothetical protein SSA3_08683 [Streptomyces sp. SA3_actG]
gi|318077010|ref|ZP_07984342.1| hypothetical protein SSA3_09862 [Streptomyces sp. SA3_actF]
gi|302430003|gb|EFL01819.1| membrane protein [Streptomyces sp. SPB78]
Length=111
Score = 167 bits (423), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 83/109 (77%), Positives = 97/109 (89%), Gaps = 0/109 (0%)
Query 2 VVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGRV 61
V++S++LFVLAAV EIGGAWLVWQGVRE +GW+W G G+IALG+YGF ATLQPD FGRV
Sbjct 3 VLKSLVLFVLAAVFEIGGAWLVWQGVREHKGWIWIGAGIIALGLYGFAATLQPDGEFGRV 62
Query 62 LAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPRGH 110
LAAYGGVFVAGS+AWG+ DG+RPDR+DV GAL C+AG+AVIMYAPRG
Sbjct 63 LAAYGGVFVAGSIAWGVVADGYRPDRYDVTGALICLAGMAVIMYAPRGR 111
>gi|297159442|gb|ADI09154.1| hypothetical protein SBI_06034 [Streptomyces bingchenggensis
BCW-1]
Length=111
Score = 167 bits (423), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 84/110 (77%), Positives = 93/110 (85%), Gaps = 0/110 (0%)
Query 1 MVVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGR 60
++ RSI LF LAA+ EIGGAWLVWQGVRE RGW W G G+IALG YGF ATLQPDA FGR
Sbjct 2 LIARSIALFCLAALFEIGGAWLVWQGVREHRGWAWVGAGIIALGAYGFVATLQPDAEFGR 61
Query 61 VLAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPRGH 110
+LAAYGGVFVAGSLAWGM DG+RPDR+DV GAL C+ GVAVIMY+PRG
Sbjct 62 ILAAYGGVFVAGSLAWGMVADGYRPDRFDVAGALICLVGVAVIMYSPRGR 111
>gi|297201507|ref|ZP_06918904.1| membrane protein [Streptomyces sviceus ATCC 29083]
gi|197716781|gb|EDY60815.1| membrane protein [Streptomyces sviceus ATCC 29083]
Length=111
Score = 167 bits (422), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 82/110 (75%), Positives = 94/110 (86%), Gaps = 0/110 (0%)
Query 1 MVVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGR 60
+V RS LFV+AA+ EIGGAWLVWQGVRE RGW+W GV+ALG YGF AT QPDAHFGR
Sbjct 2 LVARSAALFVVAALFEIGGAWLVWQGVREHRGWMWTAGGVLALGAYGFVATFQPDAHFGR 61
Query 61 VLAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPRGH 110
+LAAYGG+FVAGS+ WGMA DG+RPDRWD+ GAL C+AG+AVIMYAPRG
Sbjct 62 ILAAYGGIFVAGSILWGMAADGYRPDRWDLTGALICLAGMAVIMYAPRGD 111
>gi|333025205|ref|ZP_08453269.1| hypothetical protein STTU_2709 [Streptomyces sp. Tu6071]
gi|332745057|gb|EGJ75498.1| hypothetical protein STTU_2709 [Streptomyces sp. Tu6071]
Length=111
Score = 166 bits (421), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 83/109 (77%), Positives = 96/109 (89%), Gaps = 0/109 (0%)
Query 2 VVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGRV 61
V++S++LFVLAAV EIGGAWLVWQGVRE +GW+W G G+IALG+YGF ATLQPD FGRV
Sbjct 3 VLKSLVLFVLAAVFEIGGAWLVWQGVREHKGWIWIGAGIIALGLYGFAATLQPDGEFGRV 62
Query 62 LAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPRGH 110
LAAYGGVFVAGS+AWG DG+RPDR+DV GAL C+AG+AVIMYAPRG
Sbjct 63 LAAYGGVFVAGSIAWGAVADGYRPDRYDVTGALICLAGMAVIMYAPRGR 111
>gi|256825294|ref|YP_003149254.1| hypothetical protein Ksed_14640 [Kytococcus sedentarius DSM 20547]
gi|256688687|gb|ACV06489.1| uncharacterized conserved protein [Kytococcus sedentarius DSM
20547]
Length=111
Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 84/108 (78%), Positives = 95/108 (88%), Gaps = 0/108 (0%)
Query 2 VVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGRV 61
V+RS+ LFVLAA+ EIGGAWLVWQGVRE RG +W G G++ALG+YG ATLQPDA+FGR+
Sbjct 3 VLRSVPLFVLAALLEIGGAWLVWQGVREHRGMVWVGAGMVALGLYGLVATLQPDANFGRI 62
Query 62 LAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPRG 109
LAAYGGVFVAGSLAW MALDGFRPDRWD+ GA C+ GVAVIMYAPRG
Sbjct 63 LAAYGGVFVAGSLAWAMALDGFRPDRWDLAGAALCLVGVAVIMYAPRG 110
>gi|220913974|ref|YP_002489283.1| hypothetical protein Achl_3233 [Arthrobacter chlorophenolicus
A6]
gi|219860852|gb|ACL41194.1| protein of unknown function UPF0060 [Arthrobacter chlorophenolicus
A6]
Length=119
Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 84/107 (79%), Positives = 95/107 (89%), Gaps = 0/107 (0%)
Query 2 VVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGRV 61
V+++I+LF LAAVAEIGGAWLVWQ VRE + W WAGLGVIALG YGF ATLQPDAHFGR+
Sbjct 10 VLKTIVLFGLAAVAEIGGAWLVWQAVREGKDWWWAGLGVIALGAYGFVATLQPDAHFGRI 69
Query 62 LAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPR 108
LAAYGGVFVAGSLAWG+ DGFRPDRWDV G++ C+ GVAVIM+APR
Sbjct 70 LAAYGGVFVAGSLAWGVIFDGFRPDRWDVAGSVICLLGVAVIMFAPR 116
>gi|254393898|ref|ZP_05009001.1| membrane protein [Streptomyces clavuligerus ATCC 27064]
gi|294814363|ref|ZP_06773006.1| Putative membrane protein [Streptomyces clavuligerus ATCC 27064]
gi|326442755|ref|ZP_08217489.1| hypothetical protein SclaA2_16908 [Streptomyces clavuligerus
ATCC 27064]
gi|197707488|gb|EDY53300.1| membrane protein [Streptomyces clavuligerus ATCC 27064]
gi|294326962|gb|EFG08605.1| Putative membrane protein [Streptomyces clavuligerus ATCC 27064]
Length=111
Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 84/110 (77%), Positives = 94/110 (86%), Gaps = 0/110 (0%)
Query 1 MVVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGR 60
+V+RS LF++AA+ EIGGAWLVWQGVRE RGW+W G GVIALG YGF ATLQPDA FGR
Sbjct 2 LVLRSAALFLVAALFEIGGAWLVWQGVREHRGWIWIGAGVIALGAYGFVATLQPDAEFGR 61
Query 61 VLAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPRGH 110
VLAAYGGVFVAGSL WGM DG+RPDRWDV GAL C+ G+A+IMYAPRG
Sbjct 62 VLAAYGGVFVAGSLVWGMVADGYRPDRWDVAGALVCLLGMALIMYAPRGR 111
>gi|312141553|ref|YP_004008889.1| integral membrane protein [Rhodococcus equi 103S]
gi|325677229|ref|ZP_08156895.1| YnfA family protein [Rhodococcus equi ATCC 33707]
gi|311890892|emb|CBH50211.1| putative integral membrane protein [Rhodococcus equi 103S]
gi|325551926|gb|EGD21622.1| YnfA family protein [Rhodococcus equi ATCC 33707]
Length=108
Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/105 (80%), Positives = 93/105 (89%), Gaps = 0/105 (0%)
Query 2 VVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGRV 61
V RSILLFVLAA+ EIGGAWLVWQGVREQRGWLW G G+IALG+YG ATLQPDA+FGR+
Sbjct 3 VTRSILLFVLAALFEIGGAWLVWQGVREQRGWLWVGAGMIALGIYGLVATLQPDANFGRI 62
Query 62 LAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYA 106
LAAYGGVFVAGSL W + +DGFRPDR+D+IGAL C+ GV VIMYA
Sbjct 63 LAAYGGVFVAGSLLWAVVMDGFRPDRYDIIGALICLCGVGVIMYA 107
>gi|295837189|ref|ZP_06824122.1| membrane protein [Streptomyces sp. SPB74]
gi|197698540|gb|EDY45473.1| membrane protein [Streptomyces sp. SPB74]
Length=111
Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 80/109 (74%), Positives = 97/109 (89%), Gaps = 0/109 (0%)
Query 2 VVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGRV 61
V++S++LF +AA+ EIGGAWLVWQGVRE +GW+W G GVIALG+YGF ATLQPD FGR+
Sbjct 3 VLKSLVLFAVAALFEIGGAWLVWQGVREHKGWVWIGAGVIALGLYGFAATLQPDGEFGRI 62
Query 62 LAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPRGH 110
LAAYGGVFVAGS+AWG+ DG+RPDR+D+ GAL C+AG+AVIMYAPRGH
Sbjct 63 LAAYGGVFVAGSIAWGVLADGYRPDRYDITGALICLAGMAVIMYAPRGH 111
>gi|145223714|ref|YP_001134392.1| hypothetical protein Mflv_3127 [Mycobacterium gilvum PYR-GCK]
gi|315444042|ref|YP_004076921.1| hypothetical protein Mspyr1_24440 [Mycobacterium sp. Spyr1]
gi|189039822|sp|A4TB05.1|Y3127_MYCGI RecName: Full=UPF0060 membrane protein Mflv_3127
gi|145216200|gb|ABP45604.1| protein of unknown function UPF0060 [Mycobacterium gilvum PYR-GCK]
gi|315262345|gb|ADT99086.1| uncharacterized conserved protein [Mycobacterium sp. Spyr1]
Length=108
Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 84/108 (78%), Positives = 90/108 (84%), Gaps = 0/108 (0%)
Query 1 MVVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGR 60
MVV+S LLFVLAAV EIGGAWLVWQG RE RGWLW G GV+ALG YGF A QPDA+FGR
Sbjct 1 MVVKSALLFVLAAVLEIGGAWLVWQGFREHRGWLWVGAGVLALGAYGFVAAFQPDANFGR 60
Query 61 VLAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPR 108
VLAAYGGVFVAGSL WGM DGFRPDRWD+ GA C+ GV +IMYAPR
Sbjct 61 VLAAYGGVFVAGSLIWGMVADGFRPDRWDITGAAVCLLGVVLIMYAPR 108
>gi|111023568|ref|YP_706540.1| hypothetical protein RHA1_ro06609 [Rhodococcus jostii RHA1]
gi|123144160|sp|Q0S254.1|Y6609_RHOSR RecName: Full=UPF0060 membrane protein RHA1_ro06609
gi|110823098|gb|ABG98382.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=109
Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/107 (78%), Positives = 91/107 (86%), Gaps = 0/107 (0%)
Query 2 VVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGRV 61
V +S+ LF +AA+ EIGGAWLVWQGVRE RGW+W G GV ALG YGF ATLQPDAHFGR+
Sbjct 3 VAKSVALFAVAALFEIGGAWLVWQGVREHRGWIWIGAGVAALGAYGFVATLQPDAHFGRI 62
Query 62 LAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPR 108
LAAYGGVFVAGSL WGM DGFRPDRWDV GAL C+ G+AVIMYAPR
Sbjct 63 LAAYGGVFVAGSLIWGMVADGFRPDRWDVSGALICLLGMAVIMYAPR 109
>gi|296268007|ref|YP_003650639.1| hypothetical protein Tbis_0009 [Thermobispora bispora DSM 43833]
gi|296090794|gb|ADG86746.1| protein of unknown function UPF0060 [Thermobispora bispora DSM
43833]
Length=110
Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 84/108 (78%), Positives = 92/108 (86%), Gaps = 0/108 (0%)
Query 2 VVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGRV 61
+ RSILLFVLAA+AEIGGAWLVWQGVREQRG WAG G + LG+YG AT QPD HFGR+
Sbjct 3 IARSILLFVLAALAEIGGAWLVWQGVREQRGLWWAGAGFLVLGLYGLVATFQPDPHFGRI 62
Query 62 LAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPRG 109
LAAYGGVFVAGSL WGM +DGFRPDRWD+IGA C+ GV VIMYAPRG
Sbjct 63 LAAYGGVFVAGSLIWGMVVDGFRPDRWDLIGAAICLLGVGVIMYAPRG 110
>gi|120404379|ref|YP_954208.1| hypothetical protein Mvan_3406 [Mycobacterium vanbaalenii PYR-1]
gi|143754105|sp|A1TAK2.1|Y3406_MYCVP RecName: Full=UPF0060 membrane protein Mvan_3406
gi|119957197|gb|ABM14202.1| protein of unknown function UPF0060 [Mycobacterium vanbaalenii
PYR-1]
Length=108
Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 84/108 (78%), Positives = 90/108 (84%), Gaps = 0/108 (0%)
Query 1 MVVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGR 60
MVV+S LLFVLAA+ EIGGAWLVWQGVRE RG W G GVIALG YGF A QPDAHFGR
Sbjct 1 MVVKSALLFVLAAILEIGGAWLVWQGVREHRGLTWVGAGVIALGAYGFVAAFQPDAHFGR 60
Query 61 VLAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPR 108
VLAAYGGVFVAGSL WG+ DGFRPDRWD+ GA C+AGV +IMYAPR
Sbjct 61 VLAAYGGVFVAGSLLWGVVADGFRPDRWDITGAAVCLAGVGLIMYAPR 108
>gi|296131297|ref|YP_003638547.1| hypothetical protein Cfla_3474 [Cellulomonas flavigena DSM 20109]
gi|296023112|gb|ADG76348.1| protein of unknown function UPF0060 [Cellulomonas flavigena DSM
20109]
Length=111
Score = 164 bits (414), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 83/106 (79%), Positives = 91/106 (86%), Gaps = 0/106 (0%)
Query 3 VRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGRVL 62
+RSILLFV AA EIGGAWLVWQG+RE RGW+W G G IALG+YG ATLQPDA FGR+L
Sbjct 4 LRSILLFVAAAGLEIGGAWLVWQGLREHRGWVWVGAGAIALGLYGVVATLQPDASFGRIL 63
Query 63 AAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPR 108
AAYGGVFVAGSL WGM +DGFRPDRWDV GAL C+ GVA+IMYAPR
Sbjct 64 AAYGGVFVAGSLLWGMVVDGFRPDRWDVTGALVCLVGVALIMYAPR 109
>gi|118468777|ref|YP_887563.1| hypothetical protein MSMEG_3252 [Mycobacterium smegmatis str.
MC2 155]
gi|143754005|sp|A0QXC5.1|Y3252_MYCS2 RecName: Full=UPF0060 membrane protein MSMEG_3252
gi|118170064|gb|ABK70960.1| membrane protein [Mycobacterium smegmatis str. MC2 155]
Length=108
Score = 163 bits (413), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 84/108 (78%), Positives = 92/108 (86%), Gaps = 0/108 (0%)
Query 1 MVVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGR 60
MV +S++LFVLAAV EIGGAWLVWQG+REQRGWLWAG GVIALG YGF A QPDA+FGR
Sbjct 1 MVGKSVVLFVLAAVLEIGGAWLVWQGLREQRGWLWAGAGVIALGAYGFVAAFQPDANFGR 60
Query 61 VLAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPR 108
VLAAYGGVF+AGSL WGM DGFRPDRWDV GA + GV +IMYAPR
Sbjct 61 VLAAYGGVFIAGSLLWGMIADGFRPDRWDVAGAAVALVGVGLIMYAPR 108
>gi|345008422|ref|YP_004810776.1| membrane protein ynfA [Streptomyces violaceusniger Tu 4113]
gi|344034771|gb|AEM80496.1| UPF0060 membrane protein ynfA [Streptomyces violaceusniger Tu
4113]
Length=118
Score = 163 bits (413), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 81/108 (75%), Positives = 91/108 (85%), Gaps = 0/108 (0%)
Query 1 MVVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGR 60
+ RSI LF +AA+ EIGGAWL+WQGVRE RGW W G G+I+LG YGF ATLQPDA FGR
Sbjct 10 LTARSIALFAVAALLEIGGAWLIWQGVREHRGWAWIGAGIISLGAYGFVATLQPDAEFGR 69
Query 61 VLAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPR 108
+LAAYGGVFVAGSLAWGM D +RPDR+DVIGAL C+AGVAVIMY PR
Sbjct 70 ILAAYGGVFVAGSLAWGMVADDYRPDRFDVIGALICLAGVAVIMYVPR 117
>gi|239991549|ref|ZP_04712213.1| hypothetical protein SrosN1_29877 [Streptomyces roseosporus NRRL
11379]
gi|291448549|ref|ZP_06587939.1| UPF0060 membrane protein [Streptomyces roseosporus NRRL 15998]
gi|291351496|gb|EFE78400.1| UPF0060 membrane protein [Streptomyces roseosporus NRRL 15998]
Length=111
Score = 163 bits (412), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 80/110 (73%), Positives = 95/110 (87%), Gaps = 0/110 (0%)
Query 1 MVVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGR 60
+V RSI LFV+AA+ EIGGAWLVWQG+RE +GW+W G GVIALG+YG AT Q D FGR
Sbjct 2 LVARSIALFVVAALFEIGGAWLVWQGLREHKGWVWVGAGVIALGLYGVVATFQSDDDFGR 61
Query 61 VLAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPRGH 110
+LAAYGG+FVAGS+AWGM DG+RPDR+D+IGAL C+AG+AVIMYAPRGH
Sbjct 62 ILAAYGGIFVAGSIAWGMVADGYRPDRFDIIGALVCLAGMAVIMYAPRGH 111
>gi|337764901|emb|CCB73610.1| putative membrane protein [Streptomyces cattleya NRRL 8057]
Length=111
Score = 163 bits (412), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 82/109 (76%), Positives = 92/109 (85%), Gaps = 0/109 (0%)
Query 1 MVVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGR 60
+ +RS LFVLAA+ EIGGAWL+WQ VRE RGW WA GV+ALGVYGF ATLQPDA FGR
Sbjct 2 ITLRSAALFVLAALCEIGGAWLIWQAVREHRGWPWAAAGVVALGVYGFVATLQPDASFGR 61
Query 61 VLAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPRG 109
+LAAYGGVFVAGSL WG+ DGFRPDR+D+ GAL C+AGVAVIMYAPR
Sbjct 62 ILAAYGGVFVAGSLLWGVLADGFRPDRYDIAGALICLAGVAVIMYAPRN 110
>gi|271968821|ref|YP_003343017.1| membrane protein [Streptosporangium roseum DSM 43021]
gi|270511996|gb|ACZ90274.1| membrane protein [Streptosporangium roseum DSM 43021]
Length=110
Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 85/108 (79%), Positives = 91/108 (85%), Gaps = 0/108 (0%)
Query 2 VVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGRV 61
V RS+LLFV AA+AEIGGAWLVWQGVRE RG LW GVIALG YGF A QPD FGR+
Sbjct 3 VARSLLLFVFAALAEIGGAWLVWQGVREGRGPLWIAGGVIALGAYGFAAAFQPDPDFGRI 62
Query 62 LAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPRG 109
LAAYGGVF+AGSL WGM +DGFRPDRWDV GAL C+AGVAVIMYAPRG
Sbjct 63 LAAYGGVFIAGSLIWGMVMDGFRPDRWDVAGALICLAGVAVIMYAPRG 110
>gi|289770992|ref|ZP_06530370.1| UPF0060 membrane protein [Streptomyces lividans TK24]
gi|289701191|gb|EFD68620.1| UPF0060 membrane protein [Streptomyces lividans TK24]
Length=112
Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 80/109 (74%), Positives = 95/109 (88%), Gaps = 0/109 (0%)
Query 1 MVVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGR 60
+V+RS LFV+AA+ EIGGAWLVWQGVREQRGWLWA GV+ALG YGF AT QPDAHFGR
Sbjct 2 LVLRSAALFVVAALFEIGGAWLVWQGVREQRGWLWAAGGVLALGAYGFVATFQPDAHFGR 61
Query 61 VLAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPRG 109
+LAAYGG+FVAGS+ WG+ DG+RPDRWD+ GAL C+AG+A+IM+APR
Sbjct 62 ILAAYGGIFVAGSILWGVVADGYRPDRWDIAGALVCLAGMALIMWAPRN 110
>gi|29831299|ref|NP_825933.1| hypothetical protein SAV_4756 [Streptomyces avermitilis MA-4680]
gi|44888449|sp|Q82E60.1|Y4756_STRAW RecName: Full=UPF0060 membrane protein SAV_4756
gi|29608414|dbj|BAC72468.1| hypothetical protein [Streptomyces avermitilis MA-4680]
Length=112
Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/109 (80%), Positives = 95/109 (88%), Gaps = 0/109 (0%)
Query 1 MVVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGR 60
+V+RS LFV AA+ EIGGAWLVWQGVRE RGWLW G GV+ALGVYGF ATLQPDA FGR
Sbjct 2 LVLRSAALFVAAALFEIGGAWLVWQGVREHRGWLWIGAGVMALGVYGFVATLQPDAEFGR 61
Query 61 VLAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPRG 109
+LAAYGGVFVAGSLAWGM DG+RPDRWDV GAL C+AG+ VIMYAPRG
Sbjct 62 ILAAYGGVFVAGSLAWGMVADGYRPDRWDVTGALICLAGMTVIMYAPRG 110
>gi|226366053|ref|YP_002783836.1| hypothetical protein ROP_66440 [Rhodococcus opacus B4]
gi|226244543|dbj|BAH54891.1| hypothetical protein [Rhodococcus opacus B4]
Length=109
Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/107 (76%), Positives = 91/107 (86%), Gaps = 0/107 (0%)
Query 2 VVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGRV 61
V +S+ LF +AA+ EIGGAWLVWQGVRE RGW+W G GV ALG YGF AT+QPDA+FGR+
Sbjct 3 VAKSVALFAVAALFEIGGAWLVWQGVREHRGWIWIGAGVAALGAYGFVATMQPDANFGRI 62
Query 62 LAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPR 108
LAAYGGVFVAGSL WGM DGFRPDRWDV GAL C+ G+AVIMYAPR
Sbjct 63 LAAYGGVFVAGSLIWGMVADGFRPDRWDVSGALICLLGMAVIMYAPR 109
>gi|334335709|ref|YP_004540861.1| UPF0060 membrane protein ynfA [Isoptericola variabilis 225]
gi|334106077|gb|AEG42967.1| UPF0060 membrane protein ynfA [Isoptericola variabilis 225]
Length=111
Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/108 (75%), Positives = 94/108 (88%), Gaps = 0/108 (0%)
Query 1 MVVRSILLFVLAAVAEIGGAWLVWQGVREQRGWLWAGLGVIALGVYGFFATLQPDAHFGR 60
+++RS+ LF AA+ EIGGAWLVWQG+RE RGW+W G GVIALG+YG FAT QPDAHFGR
Sbjct 2 LILRSVALFAAAALFEIGGAWLVWQGIREHRGWIWVGAGVIALGMYGAFATFQPDAHFGR 61
Query 61 VLAAYGGVFVAGSLAWGMALDGFRPDRWDVIGALGCMAGVAVIMYAPR 108
+LAAYGGVFVAGSL WGM +DGFRPDRWDV+GAL C+ GVA+IMY PR
Sbjct 62 ILAAYGGVFVAGSLVWGMVVDGFRPDRWDVVGALVCLLGVAIIMYTPR 109
Lambda K H
0.330 0.146 0.501
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129022162688
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40