BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2646
Length=332
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609783|ref|NP_217162.1| integrase [Mycobacterium tuberculos... 668 0.0
gi|289444189|ref|ZP_06433933.1| integrase [Mycobacterium tubercu... 667 0.0
gi|306780830|ref|ZP_07419167.1| integrase [Mycobacterium tubercu... 665 0.0
gi|289762820|ref|ZP_06522198.1| integrase [Mycobacterium tubercu... 599 2e-169
gi|308232201|ref|ZP_07415262.2| integrase [Mycobacterium tubercu... 597 9e-169
gi|240173537|ref|ZP_04752195.1| integrase [Mycobacterium kansasi... 331 9e-89
gi|289751271|ref|ZP_06510649.1| integrase [Mycobacterium tubercu... 328 1e-87
gi|109392319|ref|YP_655549.1| gp32 [Mycobacterium phage Halo] >g... 228 1e-57
gi|343171699|gb|AEL98504.1| gp32 [Mycobacterium phage Liefie] 228 1e-57
gi|296169729|ref|ZP_06851346.1| phage integrase [Mycobacterium p... 213 4e-53
gi|212715402|ref|ZP_03323530.1| hypothetical protein BIFCAT_0029... 207 2e-51
gi|54023527|ref|YP_117769.1| putative phage integrase [Nocardia ... 205 1e-50
gi|296164532|ref|ZP_06847103.1| phage integrase [Mycobacterium p... 200 2e-49
gi|226363472|ref|YP_002781254.1| tyrosine recombinase [Rhodococc... 199 7e-49
gi|306822058|ref|ZP_07455442.1| phage integrase [Bifidobacterium... 191 1e-46
gi|309802554|ref|ZP_07696658.1| site-specific recombinase, phage... 187 2e-45
gi|171741094|ref|ZP_02916901.1| hypothetical protein BIFDEN_0016... 185 8e-45
gi|239622583|ref|ZP_04665614.1| phage protein [Bifidobacterium l... 184 1e-44
gi|23464983|ref|NP_695586.1| phage family integrase/recombinase ... 184 2e-44
gi|227497442|ref|ZP_03927674.1| phage integrase [Actinomyces uro... 183 4e-44
gi|333392849|gb|AEF30767.1| site-specific recombinase, phage int... 172 8e-41
gi|308234991|ref|ZP_07665728.1| phage family integrase/recombina... 171 1e-40
gi|326385291|ref|ZP_08206951.1| phage family integrase/recombina... 170 3e-40
gi|298253182|ref|ZP_06976974.1| site-specific recombinase XerD [... 170 3e-40
gi|62860876|gb|AAY16469.1| probable phage family integrase/recom... 168 9e-40
gi|291517466|emb|CBK71082.1| Site-specific recombinase XerD [Bif... 166 4e-39
gi|172041119|ref|YP_001800833.1| putative phage integrase [Coryn... 164 2e-38
gi|225020746|ref|ZP_03709938.1| hypothetical protein CORMATOL_00... 159 4e-37
gi|38234408|ref|NP_940175.1| putative phage integrase [Corynebac... 159 4e-37
gi|283455528|ref|YP_003360092.1| phage integrase [Bifidobacteriu... 159 7e-37
gi|269977407|ref|ZP_06184379.1| tyrosine recombinase XerC [Mobil... 158 1e-36
gi|227494283|ref|ZP_03924599.1| possible site specific recombina... 157 2e-36
gi|154488041|ref|ZP_02029158.1| hypothetical protein BIFADO_0161... 155 1e-35
gi|306818222|ref|ZP_07451953.1| phage integrase [Mobiluncus muli... 154 3e-35
gi|298253391|ref|ZP_06977183.1| phage-like integrase [Gardnerell... 152 5e-35
gi|189439994|ref|YP_001955075.1| Integrase [Bifidobacterium long... 152 8e-35
gi|298346534|ref|YP_003719221.1| site specific recombinase XerD ... 149 6e-34
gi|298345180|ref|YP_003717867.1| phage family integrase/recombin... 139 6e-31
gi|46190201|ref|ZP_00121752.2| COG0582: Integrase [Bifidobacteri... 124 2e-26
gi|62860892|gb|AAY16485.1| site-specific recombinase [Bifidobact... 122 1e-25
gi|338754394|gb|AEI97383.1| integrase/recombinse [Bifidobacteriu... 120 2e-25
gi|294787223|ref|ZP_06752476.1| putative phage integrase family ... 119 6e-25
gi|300742464|ref|ZP_07072485.1| phage integrase family protein [... 119 7e-25
gi|227547361|ref|ZP_03977410.1| integrase/recombinase [Bifidobac... 117 2e-24
gi|23466014|ref|NP_696617.1| integrase/recombinse [Bifidobacteri... 116 4e-24
gi|269219930|ref|ZP_06163784.1| integrase/recombinase XerC [Acti... 116 5e-24
gi|294791432|ref|ZP_06756589.1| probable integrase/recombinase [... 115 9e-24
gi|189439200|ref|YP_001954281.1| Integrase [Bifidobacterium long... 114 2e-23
gi|291455958|ref|ZP_06595348.1| integrase/recombinase protein [B... 110 2e-22
gi|311063475|ref|YP_003970200.1| DNA integration/recombination/i... 110 3e-22
>gi|15609783|ref|NP_217162.1| integrase [Mycobacterium tuberculosis H37Rv]
gi|15842187|ref|NP_337224.1| phage integrase family protein [Mycobacterium tuberculosis CDC1551]
gi|148662487|ref|YP_001284010.1| phage integrase family protein [Mycobacterium tuberculosis H37Ra]
33 more sequence titles
Length=332
Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/332 (99%), Positives = 332/332 (100%), Gaps = 0/332 (0%)
Query 1 VNTATRVRLARKRADRLNLKLIKNGHHFRLRDADEITLAVGHLGVVEAFLAAAKSQNKPP 60
+NTATRVRLARKRADRLNLKLIKNGHHFRLRDADEITLAVGHLGVVEAFLAAAKSQNKPP
Sbjct 1 MNTATRVRLARKRADRLNLKLIKNGHHFRLRDADEITLAVGHLGVVEAFLAAAKSQNKPP 60
Query 61 GPPPSLHAPPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLL 120
GPPPSLHAPPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLL
Sbjct 61 GPPPSLHAPPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLL 120
Query 121 DWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVW 180
DWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVW
Sbjct 121 DWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVW 180
Query 181 QAALAKADRRIELMIRLAGEAGLRRAEAAQAHTGDLMDGGLLLVHGKGGKRRIVPISDYL 240
QAALAKADRRIELMIRLAGEAGLRRAEAAQAHTGDLMDGGLLLVHGKGGKRRIVPISDYL
Sbjct 181 QAALAKADRRIELMIRLAGEAGLRRAEAAQAHTGDLMDGGLLLVHGKGGKRRIVPISDYL 240
Query 241 AALIRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLRA 300
AALIRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLRA
Sbjct 241 AALIRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLRA 300
Query 301 VQQLLGHASIVTTERYTALCDDEVRAAAAAAW 332
VQQLLGHASIVTTERYTALCDDEVRAAAAAAW
Sbjct 301 VQQLLGHASIVTTERYTALCDDEVRAAAAAAW 332
>gi|289444189|ref|ZP_06433933.1| integrase [Mycobacterium tuberculosis T46]
gi|289448303|ref|ZP_06438047.1| integrase [Mycobacterium tuberculosis CPHL_A]
gi|289570821|ref|ZP_06451048.1| integrase [Mycobacterium tuberculosis T17]
gi|289417108|gb|EFD14348.1| integrase [Mycobacterium tuberculosis T46]
gi|289421261|gb|EFD18462.1| integrase [Mycobacterium tuberculosis CPHL_A]
gi|289544575|gb|EFD48223.1| integrase [Mycobacterium tuberculosis T17]
Length=332
Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/332 (99%), Positives = 331/332 (99%), Gaps = 0/332 (0%)
Query 1 VNTATRVRLARKRADRLNLKLIKNGHHFRLRDADEITLAVGHLGVVEAFLAAAKSQNKPP 60
+NTATRVRLARKRADRLNLKLIKNGHHFRLRDADEITLAVGHLGVVEAFLAAAKSQNKPP
Sbjct 1 MNTATRVRLARKRADRLNLKLIKNGHHFRLRDADEITLAVGHLGVVEAFLAAAKSQNKPP 60
Query 61 GPPPSLHAPPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLL 120
GPPPSLHAPPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLL
Sbjct 61 GPPPSLHAPPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLL 120
Query 121 DWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVW 180
DWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVW
Sbjct 121 DWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVW 180
Query 181 QAALAKADRRIELMIRLAGEAGLRRAEAAQAHTGDLMDGGLLLVHGKGGKRRIVPISDYL 240
QAALAKADRR ELMIRLAGEAGLRRAEAAQAHTGDLMDGGLLLVHGKGGKRRIVPISDYL
Sbjct 181 QAALAKADRRTELMIRLAGEAGLRRAEAAQAHTGDLMDGGLLLVHGKGGKRRIVPISDYL 240
Query 241 AALIRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLRA 300
AALIRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLRA
Sbjct 241 AALIRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLRA 300
Query 301 VQQLLGHASIVTTERYTALCDDEVRAAAAAAW 332
VQQLLGHASIVTTERYTALCDDEVRAAAAAAW
Sbjct 301 VQQLLGHASIVTTERYTALCDDEVRAAAAAAW 332
>gi|306780830|ref|ZP_07419167.1| integrase [Mycobacterium tuberculosis SUMu002]
gi|306790052|ref|ZP_07428374.1| integrase [Mycobacterium tuberculosis SUMu004]
gi|306794135|ref|ZP_07432437.1| integrase [Mycobacterium tuberculosis SUMu005]
gi|308326334|gb|EFP15185.1| integrase [Mycobacterium tuberculosis SUMu002]
gi|308333494|gb|EFP22345.1| integrase [Mycobacterium tuberculosis SUMu004]
gi|308337528|gb|EFP26379.1| integrase [Mycobacterium tuberculosis SUMu005]
Length=332
Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/332 (99%), Positives = 331/332 (99%), Gaps = 0/332 (0%)
Query 1 VNTATRVRLARKRADRLNLKLIKNGHHFRLRDADEITLAVGHLGVVEAFLAAAKSQNKPP 60
+NTATRVRLARKRADRLNLKLIKNGHHFRLRDADEITLAVGHLGVVEAFLAAAKSQNKPP
Sbjct 1 MNTATRVRLARKRADRLNLKLIKNGHHFRLRDADEITLAVGHLGVVEAFLAAAKSQNKPP 60
Query 61 GPPPSLHAPPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLL 120
GPPPSLHAPPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLL
Sbjct 61 GPPPSLHAPPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLL 120
Query 121 DWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVW 180
DWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVW
Sbjct 121 DWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVW 180
Query 181 QAALAKADRRIELMIRLAGEAGLRRAEAAQAHTGDLMDGGLLLVHGKGGKRRIVPISDYL 240
QAALAKADRRIELMIRLAGEAGLRRAEAAQAHTGDLMDGGLLLVHGK GKRRIVPISDYL
Sbjct 181 QAALAKADRRIELMIRLAGEAGLRRAEAAQAHTGDLMDGGLLLVHGKDGKRRIVPISDYL 240
Query 241 AALIRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLRA 300
AALIRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLRA
Sbjct 241 AALIRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLRA 300
Query 301 VQQLLGHASIVTTERYTALCDDEVRAAAAAAW 332
VQQLLGHASIVTTERYTALCDDEVRAAAAAAW
Sbjct 301 VQQLLGHASIVTTERYTALCDDEVRAAAAAAW 332
>gi|289762820|ref|ZP_06522198.1| integrase [Mycobacterium tuberculosis GM 1503]
gi|289710326|gb|EFD74342.1| integrase [Mycobacterium tuberculosis GM 1503]
Length=435
Score = 599 bits (1545), Expect = 2e-169, Method: Compositional matrix adjust.
Identities = 300/315 (96%), Positives = 301/315 (96%), Gaps = 9/315 (2%)
Query 1 VNTATRVRLARKRADRLNLKLIKNGHHFRLRDADEITLAVGHLGVVEAFLAAAKSQNKPP 60
+NTATRVRLARKRADRLNLKLIKNGHHFRLRDADEITLAVGHLGVVEAFLAAAKSQNKPP
Sbjct 1 MNTATRVRLARKRADRLNLKLIKNGHHFRLRDADEITLAVGHLGVVEAFLAAAKSQNKPP 60
Query 61 GPPPSLHAPPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLL 120
GPPPSLHAPPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLL
Sbjct 61 GPPPSLHAPPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLL 120
Query 121 DWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVW 180
DWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVW
Sbjct 121 DWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVW 180
Query 181 QAALAKADRRIELMIRLAGEAGLRRAEAAQAHTGDLMDGGLLLVHGKGGKRRIVPISDYL 240
QAALAKADRRIELMIRLAGEAGLRRAEAAQAHTGDLMDGGLLLVHGKGGKRRIVPISDYL
Sbjct 181 QAALAKADRRIELMIRLAGEAGLRRAEAAQAHTGDLMDGGLLLVHGKGGKRRIVPISDYL 240
Query 241 AALIRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLRA 300
AALIRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGS L
Sbjct 241 AALIRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSTQL-- 298
Query 301 VQQLLGHASIVTTER 315
AS TT R
Sbjct 299 -------ASCTTTSR 306
>gi|308232201|ref|ZP_07415262.2| integrase [Mycobacterium tuberculosis SUMu001]
gi|308374648|ref|ZP_07436853.2| integrase [Mycobacterium tuberculosis SUMu006]
gi|308375530|ref|ZP_07444217.2| integrase [Mycobacterium tuberculosis SUMu007]
11 more sequence titles
Length=295
Score = 597 bits (1539), Expect = 9e-169, Method: Compositional matrix adjust.
Identities = 294/295 (99%), Positives = 295/295 (100%), Gaps = 0/295 (0%)
Query 38 LAVGHLGVVEAFLAAAKSQNKPPGPPPSLHAPPSWRRDIDDYLLNLNAAGQRPATIRLRK 97
+AVGHLGVVEAFLAAAKSQNKPPGPPPSLHAPPSWRRDIDDYLLNLNAAGQRPATIRLRK
Sbjct 1 MAVGHLGVVEAFLAAAKSQNKPPGPPPSLHAPPSWRRDIDDYLLNLNAAGQRPATIRLRK 60
Query 98 TVLCAAAHGLGRPPADVTAEHLLDWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDY 157
TVLCAAAHGLGRPPADVTAEHLLDWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDY
Sbjct 61 TVLCAAAHGLGRPPADVTAEHLLDWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDY 120
Query 158 VADSLPKVRCPKQPPRPAGDDVWQAALAKADRRIELMIRLAGEAGLRRAEAAQAHTGDLM 217
VADSLPKVRCPKQPPRPAGDDVWQAALAKADRRIELMIRLAGEAGLRRAEAAQAHTGDLM
Sbjct 121 VADSLPKVRCPKQPPRPAGDDVWQAALAKADRRIELMIRLAGEAGLRRAEAAQAHTGDLM 180
Query 218 DGGLLLVHGKGGKRRIVPISDYLAALIRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGD 277
DGGLLLVHGKGGKRRIVPISDYLAALIRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGD
Sbjct 181 DGGLLLVHGKGGKRRIVPISDYLAALIRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGD 240
Query 278 ATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYTALCDDEVRAAAAAAW 332
ATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYTALCDDEVRAAAAAAW
Sbjct 241 ATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYTALCDDEVRAAAAAAW 295
>gi|240173537|ref|ZP_04752195.1| integrase [Mycobacterium kansasii ATCC 12478]
Length=275
Score = 331 bits (849), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 166/255 (66%), Positives = 191/255 (75%), Gaps = 2/255 (0%)
Query 1 VNTATRVRLARKRADRLNLKLIKNGHHFRLRDADEITLAVGHLGVVEAFLAAAKSQNKPP 60
+NT RVR+ R RA RL L + G + LRDAD+ITLAVG L V+A+L + Q K P
Sbjct 1 MNTVNRVRITRARAKRLGLTFTQRGTVYTLRDADDITLAVGPLATVDAYLIG-RMQPKRP 59
Query 61 GPPPSLHAPPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLL 120
GP P+ HAP +WRRD+DDYL+ L A GQR +TIRLR+ LC AA GLG PP +VTAE L+
Sbjct 60 GPRPTTHAPEAWRRDVDDYLICLAAGGQRKSTIRLRRANLCVAARGLGCPPGEVTAEQLV 119
Query 121 DWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVW 180
+WLGKQQHLS E RK+YR+TLRGFFVW YEM RV Y+ D+LP VR PK PPRPA D+ W
Sbjct 120 NWLGKQQHLSQEARKSYRTTLRGFFVWLYEMGRVPVYIGDALPVVRVPKAPPRPASDEAW 179
Query 181 QAALAKADRRIELMIRLAGEAGLRRAEAAQAHTGDLMDGGLLLVHGKGGKRRIVPISDYL 240
QAALA ADRR ELM+RLAGEAGLRRAE AQ HT DLMDGG LLVHGKGGK R+VPIS YL
Sbjct 180 QAALANADRRTELMLRLAGEAGLRRAEIAQVHTADLMDGGALLVHGKGGKNRVVPISTYL 239
Query 241 AALIRDTPHGYLFPN 255
ALIR G + P
Sbjct 240 VALIRQA-RGVVVPQ 253
>gi|289751271|ref|ZP_06510649.1| integrase [Mycobacterium tuberculosis T92]
gi|289691858|gb|EFD59287.1| integrase [Mycobacterium tuberculosis T92]
Length=166
Score = 328 bits (840), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 163/165 (99%), Positives = 164/165 (99%), Gaps = 0/165 (0%)
Query 168 PKQPPRPAGDDVWQAALAKADRRIELMIRLAGEAGLRRAEAAQAHTGDLMDGGLLLVHGK 227
P+QPPRPAGDDVWQAALAKADRR ELMIRLAGEAGLRRAEAAQAHTGDLMDGGLLLVHGK
Sbjct 2 PEQPPRPAGDDVWQAALAKADRRTELMIRLAGEAGLRRAEAAQAHTGDLMDGGLLLVHGK 61
Query 228 GGKRRIVPISDYLAALIRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRY 287
GGKRRIVPISDYLAALIRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRY
Sbjct 62 GGKRRIVPISDYLAALIRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRY 121
Query 288 ATRAYRGSHNLRAVQQLLGHASIVTTERYTALCDDEVRAAAAAAW 332
ATRAYRGSHNLRAVQQLLGHASIVTTERYTALCDDEVRAAAAAAW
Sbjct 122 ATRAYRGSHNLRAVQQLLGHASIVTTERYTALCDDEVRAAAAAAW 166
>gi|109392319|ref|YP_655549.1| gp32 [Mycobacterium phage Halo]
gi|189043119|ref|YP_001936060.1| integrase [Mycobacterium phage BPs]
gi|239590043|ref|YP_002941890.1| gp32 [Mycobacterium phage Angel]
gi|91980569|gb|ABE67289.1| integrase [Mycobacterium phage Halo]
gi|171909234|gb|ACB58191.1| integrase [Mycobacterium phage BPs]
gi|238890575|gb|ACR77564.1| gp32 [Mycobacterium phage Angel]
gi|255927876|gb|ACU41496.1| gp32 [Mycobacterium phage Hope]
Length=398
Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 143/299 (48%), Positives = 175/299 (59%), Gaps = 13/299 (4%)
Query 45 VVEAFLAAAKSQNKPPGPPPSLHAPPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAA 104
V F A + PGP P + AP W + +DDYL +L AAG T R + A
Sbjct 37 VTRNFEGATITGRNTPGPAP-VPAPRDWMQILDDYLDSLAAAGYPSTTRATRAAHIRRLA 95
Query 105 HGLGRPPADVTAEHLLDWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPK 164
GLG P +VT L+ + +Q+H + E R+ YR+T FF WA R+ + LP
Sbjct 96 RGLGVSPENVTGASLVRFFAEQEHWARETRRGYRNTCVSFFGWACREGRIPTDPSADLPS 155
Query 165 VRCPKQPPRPAGDDVWQAALAKADRRIELMIRLAGEAGLRRAEAAQAHTGDL---MDGGL 221
++ PRPA D V++AAL AD R+ LM+RLA E GLRRAE AQ T DL DG +
Sbjct 156 IKPAPPAPRPAPDRVYRAALMAADARVMLMLRLAAELGLRRAEVAQVSTSDLTESFDGYV 215
Query 222 LLVHGKGGKRRIVPISDYLAALIR---------DTPHGYLFPNGTGGHLTAEHVGKLVSR 272
L+VHGKGGK R +P+SD LA LI GYLFP GHL+ VG+L
Sbjct 216 LVVHGKGGKNRTLPVSDELAELIARGAAGHTDGAPATGYLFPGDDAGHLSPRWVGRLCGD 275
Query 273 ALPGDATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYTALCDDEVRAAAAAA 331
ALP TMH LRHR+ATRAYRGS NLRAVQ +LGHAS+ TTE YTA+ D EVRAA AA
Sbjct 276 ALPDGWTMHKLRHRFATRAYRGSRNLRAVQTMLGHASVATTEIYTAVEDAEVRAAMMAA 334
>gi|343171699|gb|AEL98504.1| gp32 [Mycobacterium phage Liefie]
Length=398
Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 143/299 (48%), Positives = 175/299 (59%), Gaps = 13/299 (4%)
Query 45 VVEAFLAAAKSQNKPPGPPPSLHAPPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAA 104
V F A + PGP P + AP W + +DDYL +L AAG T R + A
Sbjct 37 VTRNFEGATITGRNTPGPAP-VPAPRDWMQILDDYLDSLAAAGYPSTTRATRAAHIRRLA 95
Query 105 HGLGRPPADVTAEHLLDWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPK 164
GLG P +VT L+ + +Q+H + E R+ YR+T FF WA R+ + LP
Sbjct 96 RGLGVSPENVTGASLVRFFAEQEHWARETRRGYRNTCVSFFGWACREGRIPTDPSADLPS 155
Query 165 VRCPKQPPRPAGDDVWQAALAKADRRIELMIRLAGEAGLRRAEAAQAHTGDL---MDGGL 221
++ PRPA D V++AAL AD R+ LM+RLA E GLRRAE AQ T DL DG +
Sbjct 156 IKPAPPAPRPAPDRVYRAALMAADARVMLMLRLAAELGLRRAEVAQVSTSDLTESFDGYV 215
Query 222 LLVHGKGGKRRIVPISDYLAALIR---------DTPHGYLFPNGTGGHLTAEHVGKLVSR 272
L+VHGKGGK R +P+SD LA LI GYLFP GHL+ VG+L
Sbjct 216 LVVHGKGGKNRTLPVSDELAELIARGAAGHTDGAPATGYLFPGDDAGHLSPRWVGRLCGD 275
Query 273 ALPGDATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYTALCDDEVRAAAAAA 331
ALP TMH LRHR+ATRAYRGS NLRAVQ +LGHAS+ TTE YTA+ D EVRAA AA
Sbjct 276 ALPDGWTMHKLRHRFATRAYRGSRNLRAVQTMLGHASVATTEIYTAVEDAEVRAAMMAA 334
>gi|296169729|ref|ZP_06851346.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295895626|gb|EFG75323.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=325
Score = 213 bits (542), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 126/269 (47%), Positives = 167/269 (63%), Gaps = 7/269 (2%)
Query 69 PPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAH-GLGRPPADVTAEHLLDWLGKQQ 127
P W I +++ L AG+R TI LR+ L + A PA++T L+ L ++
Sbjct 9 PQLWEAAISGWMIWLRIAGKREGTIELRRDHLRSIARRSRTSGPAEITLSTLVL-LCSER 67
Query 128 HLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVWQAALAKA 187
S + RK+ R++L F+ WA + D V A LP+V+ PRPA DDVW+ LA A
Sbjct 68 KWSNDHRKSVRTSLISFYDWAIDADLVSMNPAAKLPRVKPDLPAPRPAPDDVWEELLAAA 127
Query 188 DRRIELMIRLAGEAGLRRAEAAQAHTGDL---MDGGLLLVHGKGGKRRIVPISDYLAALI 244
R LM RLAGEAGLRRAE A H+ DL + G L+VHGKGGK+R+ P++D L A +
Sbjct 128 QPRERLMARLAGEAGLRRAEVALVHSDDLIRDLHGWSLIVHGKGGKQRVAPLNDGLTAEL 187
Query 245 RD--TPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLRAVQ 302
R T HGYLFP GH++AE VG ++SR +P +MH LRHR+AT Y G+ NLRAVQ
Sbjct 188 RAFCTSHGYLFPGQVDGHISAEWVGTVISRLMPPGWSMHKLRHRFATLGYSGTGNLRAVQ 247
Query 303 QLLGHASIVTTERYTALCDDEVRAAAAAA 331
+ LGHAS+ TT+RYTA+ EVR+ A AA
Sbjct 248 EALGHASVATTQRYTAVSTREVRSVADAA 276
>gi|212715402|ref|ZP_03323530.1| hypothetical protein BIFCAT_00297 [Bifidobacterium catenulatum
DSM 16992]
gi|212661708|gb|EEB22283.1| hypothetical protein BIFCAT_00297 [Bifidobacterium catenulatum
DSM 16992]
Length=276
Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 124/268 (47%), Positives = 158/268 (59%), Gaps = 5/268 (1%)
Query 66 LHAPPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLLDWLGK 125
L PP WR ++D++ +L A+G T+R R+ L AA GLG+ P DVT L+ W+
Sbjct 6 LQPPPEWRVSVEDWVKSLIASGYSEDTVRCRRYKLTHAAIGLGKSPVDVTTGDLVSWMAG 65
Query 126 QQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVWQAALA 185
Q H PE K YR+TL FF D A LPKV+ PK PRP D AALA
Sbjct 66 Q-HWKPETLKAYRNTLTSFFGRLQRTSVRPDNPAADLPKVKRPKAHPRPCPDKYILAALA 124
Query 186 KADRRIELMIRLAGEAGLRRAEAAQAHTGDLMD---GGLLLVHGKGGKRRIVPISDYLAA 242
KAD LM+RLA E GLRR E A ++ D+MD G L+V GKG K+RIVP+ D LA
Sbjct 125 KADETETLMLRLAAECGLRRGEIAGVNSRDVMDDLLGKSLIVRGKGDKQRIVPLPDDLAE 184
Query 243 LIRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLRAVQ 302
I ++ G+LFP GH+ +VGK +SR LP H+LRHRYAT Y +H+L V
Sbjct 185 AI-ESCGGWLFPGRWQGHVEESYVGKRISRLLPEGYGAHSLRHRYATATYAATHDLYLVA 243
Query 303 QLLGHASIVTTERYTALCDDEVRAAAAA 330
+LLGHAS+ TT+ Y A+ D +RA AA
Sbjct 244 RLLGHASVETTQIYVAMPDARLRAGMAA 271
>gi|54023527|ref|YP_117769.1| putative phage integrase [Nocardia farcinica IFM 10152]
gi|54015035|dbj|BAD56405.1| putative phage integrase [Nocardia farcinica IFM 10152]
Length=290
Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 129/278 (47%), Positives = 167/278 (61%), Gaps = 22/278 (7%)
Query 69 PPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRP-PADVTAEHLLDWLGKQQ 127
P SW ++ Y L++ AAG P TIRLR L A +GR P +TA+ L+ W G QQ
Sbjct 6 PASWAPTLEAYALHMAAAGLPPTTIRLRCKHLERIAREIGRAGPWTITADQLVSWAG-QQ 64
Query 128 HLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVWQAALAKA 187
+ + E R++YRS+ F+ W + P++ PRPA D V++AALA A
Sbjct 65 NWATETRRSYRSSCMKFWRWGIASGLTDTNPVEEWPRIPGAAANPRPAPDRVYRAALAAA 124
Query 188 DRRIELMIRLAGEAGLRRAEAAQAHTGDLM---DGGLLLVHGKGGKRRIVPISDYLAALI 244
D R +M+RLA E GLRRAE AQ H DL+ DG +L+VHGKGGK R +PI D +AALI
Sbjct 125 DPRTRIMLRLAAECGLRRAEVAQVHIRDLVEDFDGWVLIVHGKGGKDRRLPIPDDIAALI 184
Query 245 R-----DTPH------GYLFPNGTGGHLTAEHVGKLVSRAL-----PGDA-TMHTLRHRY 287
R +PH G+LFP GHL+A HVG L SRAL G TMH LRHR+
Sbjct 185 RAGARGHSPHDHTPSRGWLFPGQDHGHLSAAHVGVLCSRALAKVQTSGQVWTMHKLRHRF 244
Query 288 ATRAYRGSHNLRAVQQLLGHASIVTTERYTALCDDEVR 325
AT AYR + ++RAVQ+ LGH+S+ TT+ YTA+ EVR
Sbjct 245 ATTAYRATRDIRAVQEALGHSSVATTQIYTAVDRMEVR 282
>gi|296164532|ref|ZP_06847103.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295900132|gb|EFG79567.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=231
Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 126/231 (55%), Positives = 149/231 (65%), Gaps = 5/231 (2%)
Query 104 AHGLGRPPADVTAEHLLDWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLP 163
A GL PA VT +L W G+Q S E R+++R+T FF W Y + A LP
Sbjct 2 ARGLRCAPARVTTAGILAWFGRQT-WSIETRRSHRNTCASFFGWGYRAGHLPTDPAADLP 60
Query 164 KVRCPKQPPRPAGDDVWQAALAKADRRIELMIRLAGEAGLRRAEAAQAHTGDLM---DGG 220
+R PRPA D VW AA+A AD R+ LM+RLA EAGLRRAE A+ H DL G
Sbjct 61 VMRAAAPAPRPAPDAVWIAAIAGADPRVRLMLRLAAEAGLRRAEIARVHRRDLTRGPAGA 120
Query 221 LLLVHGKGGKRRIVPISDYLAALIRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATM 280
LLVHGKG K R+VP+ D LAA I D YLFP GHL+ VGKL++ ALP T
Sbjct 121 ELLVHGKGEKLRVVPLGDDLAATIADC-DAYLFPGDDEGHLSPRWVGKLMAGALPDHWTA 179
Query 281 HTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYTALCDDEVRAAAAAA 331
HTLRHR+ATRAYRGS NLRAVQ LLGH+S+ TTERYTA+ DDE+RAA +A
Sbjct 180 HTLRHRFATRAYRGSRNLRAVQTLLGHSSVATTERYTAVDDDEIRAAMMSA 230
>gi|226363472|ref|YP_002781254.1| tyrosine recombinase [Rhodococcus opacus B4]
gi|226241961|dbj|BAH52309.1| putative tyrosine recombinase [Rhodococcus opacus B4]
Length=272
Score = 199 bits (505), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 125/267 (47%), Positives = 158/267 (60%), Gaps = 5/267 (1%)
Query 69 PPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRP-PADVTAEHLLDWLGKQQ 127
P W +DD+ L A G TI R L A G P P +V + L W G+Q
Sbjct 6 PVGWVPYLDDFATALRAGGAPETTIGTRLNHLRRVARTFGAPSPLEVDGDQLTLWAGRQD 65
Query 128 HLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVWQAALAKA 187
S E R+ YR +L F+ W R + A +LP+V K PRPA D V+ AL KA
Sbjct 66 -WSIETRRGYRGSLLAFYRWMVGSGRATENPAAALPRVAPAKPKPRPAPDSVYATALMKA 124
Query 188 DRRIELMIRLAGEAGLRRAEAAQAHTGDLMD---GGLLLVHGKGGKRRIVPISDYLAALI 244
R +M+RLA E GLRRAE A H+ DL + G L+VHGKG K R++P+ D +AA +
Sbjct 125 TPRERVMLRLASECGLRRAEVALVHSRDLSEDLCGWSLVVHGKGRKDRVLPLPDEIAAEL 184
Query 245 RDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLRAVQQL 304
R P G+ FP GHL+ VGKL++ LP D TMH LRHR+ATRAYR + N+RAVQQL
Sbjct 185 RRLPRGWAFPGNDCGHLSPRWVGKLMTELLPDDWTMHKLRHRFATRAYRNTRNIRAVQQL 244
Query 305 LGHASIVTTERYTALCDDEVRAAAAAA 331
LGH S+ TT+ YTA+ DDE+RAA AA
Sbjct 245 LGHESVATTQVYTAVDDDELRAAMNAA 271
>gi|306822058|ref|ZP_07455442.1| phage integrase [Bifidobacterium dentium ATCC 27679]
gi|304554658|gb|EFM42561.1| phage integrase [Bifidobacterium dentium ATCC 27679]
Length=273
Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 115/267 (44%), Positives = 155/267 (59%), Gaps = 6/267 (2%)
Query 67 HAPPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLLDWLGKQ 126
A P W I+ +L +L AAG AT+ R+ + A + LG P DV L+ + +
Sbjct 5 QATPLWAEYINGWLDSLKAAGYSTATLHTRRCQMTAMGNALGGSPLDVGGNGLVGYFASK 64
Query 127 QHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVWQAALAK 186
+ PE RK+ R+ FF W D D + LP VR P+ PRP D V +AL+K
Sbjct 65 E-WKPETRKSARNATVSFFRWIRAHDLRDDDPSQELPSVRRPQTHPRPCPDKVILSALSK 123
Query 187 ADRRIELMIRLAGEAGLRRAEAAQAHTGDLMD---GGLLLVHGKGGKRRIVPISDYLAAL 243
A+ +LM+RL E GLRR+E A + D+MD G L+V GK K+R+VP+ D LA L
Sbjct 124 ANDEEQLMLRLGAECGLRRSEIASVSSTDVMDDLVGRSLIVRGKNDKQRLVPLPDDLADL 183
Query 244 IRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLRAVQQ 303
I H YLFP GH+ A ++GK +SR L G T H+LRHRYATRAY +H+L V +
Sbjct 184 I-TAHHDYLFPGRWQGHVEASYIGKHLSRLLDG-WTTHSLRHRYATRAYEATHDLLLVSK 241
Query 304 LLGHASIVTTERYTALCDDEVRAAAAA 330
LLGHAS+ TT+RY A+ D+ +RA A
Sbjct 242 LLGHASVETTQRYVAMPDERLRAGLEA 268
>gi|309802554|ref|ZP_07696658.1| site-specific recombinase, phage integrase family [Bifidobacterium
dentium JCVIHMP022]
gi|308220618|gb|EFO76926.1| site-specific recombinase, phage integrase family [Bifidobacterium
dentium JCVIHMP022]
Length=273
Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 114/267 (43%), Positives = 154/267 (58%), Gaps = 6/267 (2%)
Query 67 HAPPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLLDWLGKQ 126
A P W I+ +L +L AAG AT+ R+ + A + LG P DV L+ + +
Sbjct 5 QATPLWAEYINGWLDSLKAAGYSTATLHTRRCQMTAMGNALGGSPLDVGGNGLVGYFASK 64
Query 127 QHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVWQAALAK 186
+ PE RK+ R+ FF W D D + LP VR P+ PRP D V +AL+K
Sbjct 65 E-WKPETRKSARNATVSFFRWIRAHDLRDDDPSQELPSVRRPQTHPRPCPDKVILSALSK 123
Query 187 ADRRIELMIRLAGEAGLRRAEAAQAHTGDLMD---GGLLLVHGKGGKRRIVPISDYLAAL 243
A+ +LM+RL E GLRR+E A + D+MD G L+V G K+R+VP+ D LA L
Sbjct 124 ANDEEQLMLRLGAECGLRRSEIASVSSTDVMDDLVGRSLIVRGLYDKQRLVPLPDDLADL 183
Query 244 IRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLRAVQQ 303
I H YLFP GH+ A ++GK +SR L G T H+LRHRYATRAY +H+L V +
Sbjct 184 I-TAHHDYLFPGRWQGHVEASYIGKHLSRLLDG-WTTHSLRHRYATRAYEATHDLLLVSK 241
Query 304 LLGHASIVTTERYTALCDDEVRAAAAA 330
LLGHAS+ TT+RY A+ D+ +RA A
Sbjct 242 LLGHASVETTQRYVAMPDERLRAGLEA 268
>gi|171741094|ref|ZP_02916901.1| hypothetical protein BIFDEN_00161 [Bifidobacterium dentium ATCC
27678]
gi|171276708|gb|EDT44369.1| hypothetical protein BIFDEN_00161 [Bifidobacterium dentium ATCC
27678]
Length=286
Score = 185 bits (470), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 113/269 (43%), Positives = 155/269 (58%), Gaps = 8/269 (2%)
Query 69 PPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGL-GRPPADVTAEHLLDWLGKQQ 127
P +W + +D +L L AAG+ P+TI+ R+ L H L G+PP +VT W+G++
Sbjct 14 PQTWEQSVDQWLTYLRAAGRMPSTIKTRRVKLWGFVHYLAGKPPENVTRADCEKWMGREG 73
Query 128 HLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVWQAALAKA 187
LS E RK R+TL +F W + D D A LP V K PRP + + A+
Sbjct 74 -LSAETRKGIRATLTSYFDWCVDHDLRSDNPAIGLPHVAGSKPHPRPCPETGIREAMDGL 132
Query 188 DRRIELMIRLAGEAGLRRAEAAQAHTGDLM---DGGLLLVHGKGGKRRIVPISDYLAALI 244
R LM+RL E GLRR+E A+ D++ D LL V GKG K+R++P+ LA I
Sbjct 133 SERDRLMVRLGAELGLRRSEIAKVSGRDVVGPADNALLRVVGKGDKQRLIPLPQDLAVRI 192
Query 245 RDTPHGYLFP--NGTG-GHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLRAV 301
R T G+LFP N G HLTA VGK+V ALP H+LRHR AT+AY +H+L AV
Sbjct 193 RQTGDGWLFPSRNDHGISHLTAGRVGKIVGSALPQSYGTHSLRHRAATQAYLATHDLLAV 252
Query 302 QQLLGHASIVTTERYTALCDDEVRAAAAA 330
LLGH+S+ TT+RY A+ +E+R ++
Sbjct 253 STLLGHSSVATTQRYVAMPPEELRKVVSS 281
>gi|239622583|ref|ZP_04665614.1| phage protein [Bifidobacterium longum subsp. infantis CCUG 52486]
gi|239514580|gb|EEQ54447.1| phage protein [Bifidobacterium longum subsp. infantis CCUG 52486]
Length=279
Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 112/260 (44%), Positives = 151/260 (59%), Gaps = 5/260 (1%)
Query 69 PPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLLDWLGKQQH 128
P WR +I +L +L AAG T+ R+ + AA L + P DVT+E L+ W Q
Sbjct 12 PAQWRDEITLWLESLTAAGLSQDTVNTRRCKIGHAARCLDKSPYDVTSEDLVHWTASQS- 70
Query 129 LSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVWQAALAKAD 188
E RK YR+TL GFF W + R D A +LPKVR + PRP D AA+ A+
Sbjct 71 WKAETRKGYRNTLVGFFRWLHATGRRADDPAAALPKVRKTRPHPRPCPDAHIYAAMCAAN 130
Query 189 RRIELMIRLAGEAGLRRAEAAQAHTGDLMDGGL---LLVHGKGGKRRIVPISDYLAALIR 245
LM+RL EAGLR +E A H+ D+++G L+V GKG K+RIVPIS+ LA I
Sbjct 131 DVERLMLRLGAEAGLRLSEIAAVHSRDVLEGDAGPSLIVRGKGDKQRIVPISEDLAKRIT 190
Query 246 DTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLRAVQQLL 305
P G+LFP GH+ +V + ++R LP H+LRHRYATR Y +H+L V +LL
Sbjct 191 AAP-GWLFPGRWRGHVEKSYVSRHLTRLLPDGWGPHSLRHRYATRMYETTHDLLLVSKLL 249
Query 306 GHASIVTTERYTALCDDEVR 325
GH+S+ TT+ Y A+ D +R
Sbjct 250 GHSSVETTQIYVAMPDSRLR 269
>gi|23464983|ref|NP_695586.1| phage family integrase/recombinase protein [Bifidobacterium longum
NCC2705]
gi|23325582|gb|AAN24222.1| probable phage-family integrase/recombinase protein [Bifidobacterium
longum NCC2705]
Length=276
Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 112/260 (44%), Positives = 151/260 (59%), Gaps = 5/260 (1%)
Query 69 PPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLLDWLGKQQH 128
P WR +I +L +L AAG T+ R+ + AA L + P DVT+E L+ W Q
Sbjct 9 PAQWRDEITLWLESLTAAGLSQDTVNTRRCKIGHAARCLDKSPYDVTSEDLVHWTASQS- 67
Query 129 LSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVWQAALAKAD 188
E RK YR+TL GFF W + R D A +LPKVR + PRP D AA+ A+
Sbjct 68 WKAETRKGYRNTLVGFFRWLHATGRRADDPAAALPKVRKTRPHPRPCPDVHIYAAMCAAN 127
Query 189 RRIELMIRLAGEAGLRRAEAAQAHTGDLMDGGL---LLVHGKGGKRRIVPISDYLAALIR 245
LM+RL EAGLR +E A H+ D+++G L+V GKG K+RIVPIS+ LA I
Sbjct 128 DVERLMLRLGAEAGLRLSEIAAVHSRDVLEGDAGPSLIVRGKGDKQRIVPISEDLAKRIT 187
Query 246 DTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLRAVQQLL 305
P G+LFP GH+ +V + ++R LP H+LRHRYATR Y +H+L V +LL
Sbjct 188 AAP-GWLFPGRWRGHVEKSYVSRHLTRLLPDGWGPHSLRHRYATRMYETTHDLLLVSKLL 246
Query 306 GHASIVTTERYTALCDDEVR 325
GH+S+ TT+ Y A+ D +R
Sbjct 247 GHSSVETTQIYVAMPDSRLR 266
>gi|227497442|ref|ZP_03927674.1| phage integrase [Actinomyces urogenitalis DSM 15434]
gi|226833118|gb|EEH65501.1| phage integrase [Actinomyces urogenitalis DSM 15434]
Length=294
Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 106/227 (47%), Positives = 136/227 (60%), Gaps = 8/227 (3%)
Query 111 PADVTAEHLLDWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQ 170
P VT LL W ++ ++ E R + R+TLR F+ W + AD +P VR P
Sbjct 44 PWSVTTPTLLQWYTDRE-IALETRHSLRTTLRAFYAWGVAAGHLTTSPADVIPPVRRPGP 102
Query 171 PPRPAGDDVWQAALAKADRRIELMIRLAGEAGLRRAEAAQAHTGDLMD---GGLLLVHGK 227
P P DD+ ALAKAD R L++R A EAGLRRAE A H DL+ G +L VHGK
Sbjct 103 NPHPLPDDLLGQALAKADARQTLILRCAAEAGLRRAEIAAIHARDLLQTSGGTVLAVHGK 162
Query 228 GGKRRIVPISDYLAALIRDT----PHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTL 283
G K+R+VP++ LAAL+ D PHGY PNG G HL+AE V V +P T+H L
Sbjct 163 GSKQRLVPLAPGLAALLTDATNADPHGYALPNGQGSHLSAERVADSVRHLIPSPYTLHAL 222
Query 284 RHRYATRAYRGSHNLRAVQQLLGHASIVTTERYTALCDDEVRAAAAA 330
RHR+AT AY + +L +VQ+LLGHAS TT+RY A D++RA AA
Sbjct 223 RHRFATTAYDATRDLFSVQRLLGHASPTTTQRYVATDADQLRAVVAA 269
>gi|333392849|gb|AEF30767.1| site-specific recombinase, phage integrase family [Gardnerella
vaginalis HMP9231]
Length=277
Score = 172 bits (436), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 103/268 (39%), Positives = 146/268 (55%), Gaps = 7/268 (2%)
Query 69 PPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLLDWLGKQQH 128
P SW + +L L A+G TIR R + A L +PP D+T + L++ L Q
Sbjct 10 PNSWETYVTHWLEYLEASGYTEDTIRCRYYKISRLARLLNQPPEDITGQQLVE-LFAHQD 68
Query 129 LSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVWQAALAKA- 187
E RK Y ST+R F+ + E + + LPK+R P P D + + ALA+
Sbjct 69 WKRETRKGYSSTIRSFYSYMIEEEIIDVNPTVKLPKIRKEYAIPHPCPDYIIRGALARVR 128
Query 188 -DRRIELMIRLAGEAGLRRAEAAQAHTGDLMDGGL---LLVHGKGGKRRIVPISDYLAAL 243
++ E M+RL E GLRR+E AQ + D+M LLVHGKG K R VPI+ LA +
Sbjct 129 GNKEYEAMLRLGAECGLRRSEIAQVSSSDIMMLNTHPQLLVHGKGRKERTVPIAPDLAQI 188
Query 244 IRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLRAVQQ 303
I + HGY+FP GH+ A ++ +S+ L + H+LRHRYAT+AY +H+L V +
Sbjct 189 IANK-HGYMFPGRWTGHVEASYIAHHISQLLGNGYSTHSLRHRYATKAYESTHDLLLVSK 247
Query 304 LLGHASIVTTERYTALCDDEVRAAAAAA 331
LLGHAS+ TT+ Y +L + A A
Sbjct 248 LLGHASVETTQIYISLTFPDSSAITEAV 275
>gi|308234991|ref|ZP_07665728.1| phage family integrase/recombinase protein [Gardnerella vaginalis
ATCC 14018]
gi|311113898|ref|YP_003985119.1| phage integrase [Gardnerella vaginalis ATCC 14019]
gi|310945392|gb|ADP38096.1| phage integrase [Gardnerella vaginalis ATCC 14019]
Length=277
Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 103/268 (39%), Positives = 145/268 (55%), Gaps = 7/268 (2%)
Query 69 PPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLLDWLGKQQH 128
P SW + +L L A+G TIR R + A L +PP D+T + L++ L Q
Sbjct 10 PNSWETYVTHWLEYLEASGYTEDTIRCRYYKISRLARLLNQPPEDITGQQLVE-LFAHQD 68
Query 129 LSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVWQAALAKA- 187
E RK Y ST+R F+ + E + + LPK+R P P D + + ALA+
Sbjct 69 WKRETRKGYSSTIRSFYSYMIEEEIIDVNPTVKLPKIRKEYAIPHPCPDYIIRGALARVR 128
Query 188 -DRRIELMIRLAGEAGLRRAEAAQAHTGDLMDGGL---LLVHGKGGKRRIVPISDYLAAL 243
++ E M+RL E GLRR+E AQ + D+M LLVHGKG K R VPI+ LA +
Sbjct 129 GNKEYEAMLRLGAECGLRRSEIAQVSSSDIMMLNTHPQLLVHGKGRKERTVPIAPDLAQI 188
Query 244 IRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLRAVQQ 303
I + HGY+FP GH+ A ++ +S+ L + H+LRHRYAT AY +H+L V +
Sbjct 189 IANK-HGYMFPGRWTGHVEASYIAHHISQLLGNGYSTHSLRHRYATNAYESTHDLLLVSK 247
Query 304 LLGHASIVTTERYTALCDDEVRAAAAAA 331
LLGHAS+ TT+ Y +L + A A
Sbjct 248 LLGHASVETTQIYISLTFPDSSAITEAV 275
>gi|326385291|ref|ZP_08206951.1| phage family integrase/recombinase protein [Gordonia neofelifaecis
NRRL B-59395]
gi|326195982|gb|EGD53196.1| phage family integrase/recombinase protein [Gordonia neofelifaecis
NRRL B-59395]
Length=269
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 110/263 (42%), Positives = 143/263 (55%), Gaps = 5/263 (1%)
Query 72 WRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLLDWLGKQQHLSP 131
W I ++ L A G+ T +LR+ L A P+ V L+ WL + S
Sbjct 2 WSAAIAAFVSYLGAGGRSLETRKLRQYQLLCFADVATAAPSAVELPELVAWL-DHEGWSN 60
Query 132 EGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVWQAALAKADRRI 191
R++ R+ L FF W + D A LP V PRP + ++A+ A R
Sbjct 61 NTRRSVRACLVVFFTWLQATGQRPDNPARLLPTVAAKPGRPRPCPESALRSAVVNAAPRE 120
Query 192 ELMIRLAGEAGLRRAEAAQA---HTGDLMDGGLLLVHGKGGKRRIVPISDYLAALIRDTP 248
LM+ LA GLRRAE A H DG L V GKGG+ R+VPISD LA + +
Sbjct 121 RLMLALAATGGLRRAEIAAVRGEHVERGFDGAQLRVLGKGGRERLVPISDELAEQL-EQR 179
Query 249 HGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLRAVQQLLGHA 308
GY FP+ GGHLT HVGKL++R LP T HTLRHR+A+ AYR ++RAVQ+LLGHA
Sbjct 180 RGYAFPSPRGGHLTPAHVGKLIARLLPPGWTTHTLRHRFASAAYRADRDIRAVQELLGHA 239
Query 309 SIVTTERYTALCDDEVRAAAAAA 331
S+ TT+ YTAL DD +R A +A
Sbjct 240 SVATTQIYTALPDDSLRRATLSA 262
>gi|298253182|ref|ZP_06976974.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1]
gi|297532577|gb|EFH71463.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1]
Length=298
Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 102/268 (39%), Positives = 145/268 (55%), Gaps = 7/268 (2%)
Query 69 PPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLLDWLGKQQH 128
P SW + +L L A+G TIR R + A L +PP D+T + L++ L Q
Sbjct 31 PNSWETYVTHWLEYLEASGYTEDTIRCRYYKISRLARLLNQPPEDITGQQLVE-LFAHQD 89
Query 129 LSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVWQAALAKA- 187
E RK Y ST+R F+ + E + + LPK+R P P D + + ALA+
Sbjct 90 WKRETRKGYSSTIRSFYSYMIEEEIIDVNPTVKLPKIRKEYAIPHPCPDYIIRGALARVR 149
Query 188 -DRRIELMIRLAGEAGLRRAEAAQAHTGDLMDGGL---LLVHGKGGKRRIVPISDYLAAL 243
++ E M+RL E GLRR+E AQ + D+M LLVHGKG K R VPI+ LA +
Sbjct 150 GNKEYEAMLRLGAECGLRRSEIAQVSSSDIMMLNTHPQLLVHGKGRKERTVPIAPDLAQI 209
Query 244 IRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLRAVQQ 303
I + HGY+FP GH+ A ++ +S+ L + H+LRHRY T+AY +H+L V +
Sbjct 210 IANK-HGYMFPGRWTGHVEASYIAHHISQLLGNGYSTHSLRHRYDTKAYESTHDLLLVSK 268
Query 304 LLGHASIVTTERYTALCDDEVRAAAAAA 331
LLGHAS+ TT+ Y +L + A A
Sbjct 269 LLGHASVETTQIYISLTFPDSSAITEAV 296
>gi|62860876|gb|AAY16469.1| probable phage family integrase/recombinase protein [Bifidobacterium
breve]
gi|339478567|gb|ABE95022.1| Phage integrase [Bifidobacterium breve UCC2003]
Length=274
Score = 168 bits (426), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 113/271 (42%), Positives = 151/271 (56%), Gaps = 5/271 (1%)
Query 63 PPSLHAPPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLLDW 122
P + P WR I +L +L A +TI R+ L A + LG P DV A L+ +
Sbjct 2 PTKQYPAPGWRDYIAQWLDSLKAGAYAASTINTRRCQLTAISQALGGSPLDVEASDLVAY 61
Query 123 LGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVWQA 182
++ PE RK R+ GFF W ++ + + +LP +R P PRP D V
Sbjct 62 FAGRE-WKPETRKGARNACAGFFGWMFQTGHIDTDPSRALPSIRRPHPHPRPCPDIVILK 120
Query 183 ALAKADRRIELMIRLAGEAGLRRAEAAQAHTGDL---MDGGLLLVHGKGGKRRIVPISDY 239
AL+KA R LM+RL EAGLRR E A+ DL + G L+V GKG +R+VPISD
Sbjct 121 ALSKATDRERLMLRLGAEAGLRRFEIAKISDADLVRDLMGWSLMVIGKGDVQRMVPISDD 180
Query 240 LAALIRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLR 299
LA IR GY+FP G H+ A +VGK +SR L G + H+LRHRYATR + +H L
Sbjct 181 LAGEIRAHGPGYIFPGRWGSHVEASYVGKHLSRLLDG-WSAHSLRHRYATRTWEATHGLL 239
Query 300 AVQQLLGHASIVTTERYTALCDDEVRAAAAA 330
V +LLGHAS+ TT+RY A+ +R A +A
Sbjct 240 PVSRLLGHASVETTQRYVAMPCARLRDAVSA 270
>gi|291517466|emb|CBK71082.1| Site-specific recombinase XerD [Bifidobacterium longum subsp.
longum F8]
Length=259
Score = 166 bits (421), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 107/255 (42%), Positives = 141/255 (56%), Gaps = 5/255 (1%)
Query 79 YLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLLDWLGKQQHLSPEGRKTYR 138
+L +L AAG T+ R+ + A + L P DV + LL + PE RK +
Sbjct 2 WLDSLKAAGYSTNTLNTRRCQMSALSRALEGDPRDVEGDDLLAHFAAKD-WKPETRKGAK 60
Query 139 STLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVWQAALAKADRRIELMIRLA 198
+ +F W R ++ LP V+ P+ PRP D V AL KA LM+RL
Sbjct 61 NACVSYFRWLKASGRSEADPSEFLPTVKRPEPHPRPCPDVVILTALRKATDSERLMLRLG 120
Query 199 GEAGLRRAEAAQAHTGDLMD---GGLLLVHGKGGKRRIVPISDYLAALIRDTPHGYLFPN 255
E GLRR E A+ H+ D+M G L+V GKG K+RIVPI D LA LIR + HGYLFP
Sbjct 121 AECGLRRFEIAKVHSRDVMRDLVGWSLVVVGKGDKQRIVPIGDDLALLIR-SAHGYLFPG 179
Query 256 GTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTER 315
GH + +VG+ +S L T H+LRHRYAT Y + +L V +LLGHAS+ TT+R
Sbjct 180 RWSGHAESSYVGRHLSDLLGDGWTAHSLRHRYATTTYAATRDLLLVSKLLGHASVETTQR 239
Query 316 YTALCDDEVRAAAAA 330
Y A+ DD +RAA A
Sbjct 240 YIAMPDDRLRAAVEA 254
>gi|172041119|ref|YP_001800833.1| putative phage integrase [Corynebacterium urealyticum DSM 7109]
gi|171852423|emb|CAQ05399.1| putative phage integrase [Corynebacterium urealyticum DSM 7109]
Length=265
Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/207 (48%), Positives = 121/207 (59%), Gaps = 2/207 (0%)
Query 126 QQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVWQAALA 185
QQ+ PE R+ YRS+LR FF W E + + +A LP+ R + PRPA D AL
Sbjct 56 QQNWKPETRRGYRSSLRQFFAWR-EKAGLGENIARDLPRARLHRSLPRPARDVDILLALR 114
Query 186 KADRRIELMIRLAGEAGLRRAEAAQAHTGDLMDGGLLLVHGKGGKRRIVPISDYLAALIR 245
KA R +LMI L GLRR E + T DL+ G L V GKGG R VP+ +L+ IR
Sbjct 115 KAPARTQLMIELMAYGGLRRGEVCKLRTCDLV-GDTLRVVGKGGHERFVPLPPHLSGQIR 173
Query 246 DTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLRAVQQLL 305
GYLFP GHL+A +VGKL+ RALP T H LRHR+AT AYR ++ AVQ LL
Sbjct 174 GMTAGYLFPGRIDGHLSAAYVGKLIGRALPAGVTPHQLRHRFATVAYRKGRDIVAVQSLL 233
Query 306 GHASIVTTERYTALCDDEVRAAAAAAW 332
GHA + TT Y AL D + +A AW
Sbjct 234 GHAKLDTTMIYVALDDSARQQSAQYAW 260
>gi|225020746|ref|ZP_03709938.1| hypothetical protein CORMATOL_00753 [Corynebacterium matruchotii
ATCC 33806]
gi|224946519|gb|EEG27728.1| hypothetical protein CORMATOL_00753 [Corynebacterium matruchotii
ATCC 33806]
Length=294
Score = 159 bits (403), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 102/270 (38%), Positives = 150/270 (56%), Gaps = 14/270 (5%)
Query 69 PPSWRRDIDDYLLNLNAAGQRPATIRLR-KTVLCAAAHGLGRPPADVTAEHLLDWLGKQQ 127
P W I + +NL A G + +T+ R K + A + P VT++ L+ W G +
Sbjct 13 PYEWHEAIRQWEMNLRARGMKESTVETRVKHLRSLALQKVADTPMGVTSKLLVQWAGVK- 71
Query 128 HLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVWQAALAKA 187
+ SPE R +Y +L FF + Y V + + + P PRPA ++V + ALAKA
Sbjct 72 NWSPETRHSYYMSLITFFHY-YLPTGVENPTKEICHSISRPSPVPRPAPEEVIREALAKA 130
Query 188 ----DRRIELMIRLAGEAGLRRAEAAQAHTGDL---MDGGLLLVHGKGGKRRIVPISDYL 240
D+R ++IRLA E GLRR+E A H DL + L++HGKGGK+R++P + L
Sbjct 131 YKLRDQRPAVIIRLAAELGLRRSEIACLHMTDLKGHVGNRWLVIHGKGGKQRVLPCPETL 190
Query 241 AALIRDTP---HGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAY-RGSH 296
A I+ +G++FP GHL+ + KL +R L T+HTLRHR+AT AY G H
Sbjct 191 AHAIKSVSSDDNGWVFPGKIDGHLSPRWIAKLATRVLAESWTLHTLRHRFATVAYNEGGH 250
Query 297 NLRAVQQLLGHASIVTTERYTALCDDEVRA 326
+L +QQ +GH +I TT+RYT D ++A
Sbjct 251 DLLTIQQAMGHENIATTQRYTKYQPDALKA 280
>gi|38234408|ref|NP_940175.1| putative phage integrase [Corynebacterium diphtheriae NCTC 13129]
gi|38200671|emb|CAE50367.1| Putative phage integrase [Corynebacterium diphtheriae]
Length=271
Score = 159 bits (403), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 98/254 (39%), Positives = 141/254 (56%), Gaps = 5/254 (1%)
Query 76 IDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLLDWLGKQQHLSPEGRK 135
I DY +L A G+ TI +R + + + +P VT + WL + P RK
Sbjct 10 IADYQEHLLAGGRARGTIHVRISHISRCLTFIDKPLWAVTTGDIERWLAAGE-WGPAARK 68
Query 136 TYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVWQAALAKADRRIELMI 195
+ R+++R FF WA + A ++ V + PRP D + A+ A R+ L I
Sbjct 69 SARTSVRVFFAWAVREGLIETNPAITIIPVPQVRSVPRPCPDALISDAMKVAAPRVRLAI 128
Query 196 RLAGEAGLRRAEAAQAHTGDLM---DGGLLLVHGKGGKRRIVPISDYLAALIRDTPHGYL 252
+ GLRR E A+ GD+ G +L V GKGG R++P +LA I G++
Sbjct 129 EIMATCGLRRDECARVRAGDVEPVGQGWILRVRGKGGHERLIPCPPHLARRI-AAAQGWV 187
Query 253 FPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVT 312
FP G GH++A +GKL+SRALPG T H +RHRYAT AY +++LRAVQ+LLGHAS+ T
Sbjct 188 FPGGANGHVSAGWLGKLISRALPGAWTPHKIRHRYATVAYGDTYDLRAVQELLGHASVAT 247
Query 313 TERYTALCDDEVRA 326
T+ YTA+ D +R+
Sbjct 248 TQIYTAVSDTSMRS 261
>gi|283455528|ref|YP_003360092.1| phage integrase [Bifidobacterium dentium Bd1]
gi|283102162|gb|ADB09268.1| Phage integrase [Bifidobacterium dentium Bd1]
Length=244
Score = 159 bits (402), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 98/229 (43%), Positives = 132/229 (58%), Gaps = 7/229 (3%)
Query 108 GRPPADVTAEHLLDWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRC 167
G+PP +VT W+G++ LS E RK R+TL +F W + D D A LP V
Sbjct 12 GKPPENVTRADCEKWMGREG-LSAETRKGIRATLTSYFDWCVDHDLRSDNPAIGLPHVAG 70
Query 168 PKQPPRPAGDDVWQAALAKADRRIELMIRLAGEAGLRRAEAAQAHTGDLM---DGGLLLV 224
K PRP + + A+ R LM+RL E GLRR+E A+ D++ D LL V
Sbjct 71 SKPHPRPCPETGIREAMDGLSERDRLMVRLGAELGLRRSEIAKVSGRDVVGPADNALLRV 130
Query 225 HGKGGKRRIVPISDYLAALIRDTPHGYLFP--NGTG-GHLTAEHVGKLVSRALPGDATMH 281
GKG K+R++P+ LA IR T G+LFP N G HLTA VGK+V ALP H
Sbjct 131 VGKGDKQRLIPLPQDLAVRIRQTGDGWLFPSRNDHGISHLTAGRVGKIVGSALPQSYGTH 190
Query 282 TLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYTALCDDEVRAAAAA 330
+LRHR AT+AY +H+L AV LLGH+S+ TT+RY A+ +E+R ++
Sbjct 191 SLRHRAATQAYLATHDLLAVSTLLGHSSVATTQRYVAMPPEELRKVVSS 239
>gi|269977407|ref|ZP_06184379.1| tyrosine recombinase XerC [Mobiluncus mulieris 28-1]
gi|269934323|gb|EEZ90885.1| tyrosine recombinase XerC [Mobiluncus mulieris 28-1]
Length=225
Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/225 (43%), Positives = 128/225 (57%), Gaps = 8/225 (3%)
Query 114 VTAEHLLDWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPR 173
+T E LLD+ + PE R + S+ R FF WAY R+ A LP ++ PPR
Sbjct 1 MTEEVLLDFSACHDWM-PETRHSAFSSFRQFFAWAYRTGRLETDPAAGLPAIKRFVPPPR 59
Query 174 PAGDDVWQAALAKADRRIELMIRLAGEAGLRRAEAAQAHTGDLMD---GGLLLVHGKGGK 230
P + ++AAL +AD R L++ LAG+ GLRR+E H D+ G L+VHGKGGK
Sbjct 60 PISELDFEAALDQADERTRLILLLAGKMGLRRSEICLVHARDIQQDLLGYSLVVHGKGGK 119
Query 231 RRIVPISDYLAALIRDTPH--GYLFPNGTG--GHLTAEHVGKLVSRALPGDATMHTLRHR 286
R+VPI D L +R G++FP+ T GHLT+ V KL R LP +H LRHR
Sbjct 120 TRVVPIPDSLVFPLRRAGEIGGWVFPSLTAREGHLTSGTVAKLAKRVLPTGVCLHQLRHR 179
Query 287 YATRAYRGSHNLRAVQQLLGHASIVTTERYTALCDDEVRAAAAAA 331
+AT Y + +LRAVQ LLGH + TT+RY A+ D +R A A
Sbjct 180 FATIVYLRTKDLRAVQMLLGHDKVSTTQRYVAMDDQRLRLAVNFA 224
>gi|227494283|ref|ZP_03924599.1| possible site specific recombinase [Actinomyces coleocanis DSM
15436]
gi|226832017|gb|EEH64400.1| possible site specific recombinase [Actinomyces coleocanis DSM
15436]
Length=286
Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/269 (36%), Positives = 141/269 (53%), Gaps = 7/269 (2%)
Query 69 PPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLLDWLGKQQH 128
P W +D++ L AA P TI+ R A PA+ T + L+++ +
Sbjct 18 PTVWVAPVDEWQSALKAAQLSPNTIKTRVDRFRQFARWYEAGPAECTTKTLMEYSAAHE- 76
Query 129 LSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVWQAALAKAD 188
S E R++ +TL+ FF W + ++ LPKV+ PRPA D ++ L
Sbjct 77 WSCETRRSVHATLQSFFRWFHGAGYADIDISAGLPKVKPSSPKPRPAPDSAVRSGLENGG 136
Query 189 RRIELMIRLAGEAGLRRAEAAQAHTGDLMD---GGLLLVHGKGGKRRIVPISDYLA-ALI 244
R ++ LA GLRR E + H+ D+++ G L VHGKG K RIVP+ + LA +I
Sbjct 137 NREYFILSLAAYVGLRREEIVKVHSKDIIEDILGYSLRVHGKGNKERIVPLPELLARQVI 196
Query 245 RDTPH--GYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLRAVQ 302
+ GYL P GH++A + GKL +R LPGD T+H LRHR+ T AY S ++ AVQ
Sbjct 197 AECARNAGYLLPGNIDGHMSARYAGKLATRCLPGDITLHMLRHRFGTVAYNRSKDIAAVQ 256
Query 303 QLLGHASIVTTERYTALCDDEVRAAAAAA 331
+LGH + TT RY A+ + +R + A
Sbjct 257 DILGHTNPATTRRYIAVENSRLREVVSLA 285
>gi|154488041|ref|ZP_02029158.1| hypothetical protein BIFADO_01611 [Bifidobacterium adolescentis
L2-32]
gi|154083514|gb|EDN82559.1| hypothetical protein BIFADO_01611 [Bifidobacterium adolescentis
L2-32]
Length=237
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 100/234 (43%), Positives = 132/234 (57%), Gaps = 5/234 (2%)
Query 100 LCAAAHGLGRPPADVTAEHLLDWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVA 159
+ A + L P DV + LL + PE RK ++ +F W R +
Sbjct 1 MSALSRALEGDPRDVEGDDLLAHFAAKD-WKPETRKGAKNACVSYFRWLKASGRSEADPS 59
Query 160 DSLPKVRCPKQPPRPAGDDVWQAALAKADRRIELMIRLAGEAGLRRAEAAQAHTGDLMD- 218
+ LP V+ P+ PRP D V AAL KA LM+RL E GLRR E A+ H+ D+M
Sbjct 60 EFLPTVKRPEPHPRPCPDVVILAALRKATDGERLMLRLGAECGLRRFEIAKVHSRDVMRD 119
Query 219 --GGLLLVHGKGGKRRIVPISDYLAALIRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPG 276
G L+V GKG K+RIVPI D LA LIR + +GYLFP GH+ + +VG+ +S L
Sbjct 120 LVGWSLVVVGKGDKQRIVPIGDDLALLIR-SANGYLFPGRWSGHVESSYVGRHLSDLLGD 178
Query 277 DATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYTALCDDEVRAAAAA 330
T H+LRHRYAT Y + +L V +LLGHAS+ TT+RY A+ DD +RAA A
Sbjct 179 GWTAHSLRHRYATTTYAATRDLLLVSKLLGHASVETTQRYIAMPDDRLRAAVEA 232
>gi|306818222|ref|ZP_07451953.1| phage integrase [Mobiluncus mulieris ATCC 35239]
gi|304649186|gb|EFM46480.1| phage integrase [Mobiluncus mulieris ATCC 35239]
Length=266
Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 101/261 (39%), Positives = 135/261 (52%), Gaps = 3/261 (1%)
Query 71 SWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLLDWLGKQQHLS 130
+W YL +L AAG+ P TIR+ + + A G+ PA VT E L WL +
Sbjct 6 TWPGATSAYLRHLKAAGRSPGTIRIHRYYMGLLA-GIAPCPAHVTTERLEVWL-SEHDWQ 63
Query 131 PEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVWQAALAKADRR 190
PE R++ + FF + + V+ L V P PRPA + + ALA A R
Sbjct 64 PETRRSAQGVASTFFKYLVREEIVKKDPTLGLAPVHVPDGVPRPAPEAAVRHALANAPDR 123
Query 191 IELMIRLAGEAGLRRAEAAQAHTGDLMDGGLLLVHGKGGKRRIVPISDYLAALIRDTPHG 250
LM+R A GLR E A+ D DG LL V GKGG+ RI+P+ D + G
Sbjct 124 TALMVRFAAFCGLRACEIAKLRGSD-WDGELLRVKGKGGRVRIIPVQDRTLIYHLEQCPG 182
Query 251 YLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLRAVQQLLGHASI 310
+LFP GHL+A++ KL+ LP T H LRHR+ T AYR +H+L AV ++GHA
Sbjct 183 WLFPGRIDGHLSAQYTAKLLGEYLPAGVTGHALRHRFGTVAYRATHDLLAVGAVMGHAKT 242
Query 311 VTTERYTALCDDEVRAAAAAA 331
TT+RY L D + A AAA
Sbjct 243 DTTKRYIQLDLDPLMRAVAAA 263
>gi|298253391|ref|ZP_06977183.1| phage-like integrase [Gardnerella vaginalis 5-1]
gi|297532786|gb|EFH71672.1| phage-like integrase [Gardnerella vaginalis 5-1]
Length=279
Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 99/262 (38%), Positives = 142/262 (55%), Gaps = 10/262 (3%)
Query 76 IDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLLDWLGKQQHLSPEGRK 135
I++Y+L L AAGQ P T+ R+ L A L V+ E L+ WL ++ + E RK
Sbjct 19 INNYILTLKAAGQSPKTLESRRIQLVRMAIDLN--VTTVSNEELVTWLA-NKNWANETRK 75
Query 136 TYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVWQAALAKADRRIE-LM 194
+ R+ +RGFF + + D A LP VR + P P D AL + E LM
Sbjct 76 SNRAAIRGFFNYLFHTHIRTDDPAFDLPSVRPSRPLPHPCPDQYITNALEQVHNNKERLM 135
Query 195 IRLAGEAGLRRAEAAQAHTGDLMD----GGLLLVHGKGGKRRIVPISDYLAALIRDTPHG 250
I LA GLRR E + H+ D+++ G L++HGKG K R +PIS +A I HG
Sbjct 136 IILAAGYGLRRCEICRIHSNDIINDAYGGYALIIHGKGNKERSLPISTDIAMHI-IAEHG 194
Query 251 YLFPNGT-GGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLRAVQQLLGHAS 309
YL+P H+ ++GK +S LP + H+LRHR+AT AY +H++ AV + LGH S
Sbjct 195 YLYPGRYPDTHVEESYIGKRLSDLLPNGWSGHSLRHRFATTAYCKTHDIFAVSRALGHES 254
Query 310 IVTTERYTALCDDEVRAAAAAA 331
+ TT+RY AL D ++ +A
Sbjct 255 VATTQRYVALPVDALQNIISAT 276
>gi|189439994|ref|YP_001955075.1| Integrase [Bifidobacterium longum DJO10A]
gi|189428429|gb|ACD98577.1| Integrase [Bifidobacterium longum DJO10A]
Length=223
Score = 152 bits (384), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 93/203 (46%), Positives = 121/203 (60%), Gaps = 4/203 (1%)
Query 131 PEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVWQAALAKADRR 190
PE RK ++ +F W R ++ LP V+ P+ PRP D V AAL KA
Sbjct 17 PETRKGAKNACVSYFRWLKASGRSEADPSEFLPTVKRPEPHPRPCPDVVILAALRKATDG 76
Query 191 IELMIRLAGEAGLRRAEAAQAHTGDLMD---GGLLLVHGKGGKRRIVPISDYLAALIRDT 247
LM+RL E GLRR E A+ H+ D+M G L+V GKG K+RIVPI D LA LIR +
Sbjct 77 ERLMLRLGAECGLRRFEIAKVHSRDVMRDLVGWSLVVVGKGDKQRIVPIGDDLALLIR-S 135
Query 248 PHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLRAVQQLLGH 307
+GYLFP GH+ + +VG+ +S L T H+LRHRYAT Y + +L V +LLGH
Sbjct 136 ANGYLFPGRWSGHVESSYVGRHLSDLLGDGWTAHSLRHRYATTTYAATRDLLLVSKLLGH 195
Query 308 ASIVTTERYTALCDDEVRAAAAA 330
AS+ TT+RY A+ DD +RAA A
Sbjct 196 ASVETTQRYIAMPDDRLRAAVEA 218
>gi|298346534|ref|YP_003719221.1| site specific recombinase XerD [Mobiluncus curtisii ATCC 43063]
gi|298236595|gb|ADI67727.1| site specific recombinase XerD [Mobiluncus curtisii ATCC 43063]
Length=264
Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 95/261 (37%), Positives = 134/261 (52%), Gaps = 3/261 (1%)
Query 71 SWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLLDWLGKQQHLS 130
+W YL +L AAG+ TIR+ + L G+ P V+ E L WL +
Sbjct 5 TWENCASAYLQHLKAAGRAKGTIRIHRYYL-QVMRGIAPCPGLVSRERLEAWLA-EHDWK 62
Query 131 PEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVWQAALAKADRR 190
PE R++ + FF + E ++D A+ L V P P PA + + AL A +R
Sbjct 63 PETRRSAQGVAHQFFKFLVEDGILKDSPAEFLKPVHVPDGVPHPAPESAVRHALQNAPKR 122
Query 191 IELMIRLAGEAGLRRAEAAQAHTGDLMDGGLLLVHGKGGKRRIVPISDYLAALIRDTPHG 250
LM+R A GLR E G+ DG LL V GKGG+ R++P+ D ++ G
Sbjct 123 TALMVRFAALCGLRACEICTLR-GNAWDGELLRVKGKGGRVRVIPLQDSTLIYSLESCPG 181
Query 251 YLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLRAVQQLLGHASI 310
+LFP GHL+A++ KL+ ALP T H+LRHR+ T AYR +H+L AV ++GH
Sbjct 182 WLFPGRIDGHLSAQYTAKLLGSALPPGVTGHSLRHRFGTVAYRATHDLLAVGAVMGHVKT 241
Query 311 VTTERYTALCDDEVRAAAAAA 331
TT+RY L D + A AA
Sbjct 242 DTTKRYIKLDLDPLARAVQAA 262
>gi|298345180|ref|YP_003717867.1| phage family integrase/recombinase protein [Mobiluncus curtisii
ATCC 43063]
gi|298235241|gb|ADI66373.1| phage family integrase/recombinase protein [Mobiluncus curtisii
ATCC 43063]
Length=222
Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 94/219 (43%), Positives = 129/219 (59%), Gaps = 8/219 (3%)
Query 119 LLDWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDD 178
LL+++ + S E R +Y ++L+ FF W + + + A LP V+ PRP D+
Sbjct 2 LLEYVSAKPWQS-ETRHSYYASLKQFFAWYSRIYKYEN-PALVLPTVKRGSPMPRPIPDN 59
Query 179 VWQAALAKADRRIELMIRLAGEAGLRRAEAAQAHTGDLMD---GGLLLVHGKGGKRRIVP 235
+ ALA R L + LA AGLR E A+ + GD+ + G L+VHGKG K+R+VP
Sbjct 60 LLAEALAGCTPRHRLALELAALAGLRSGEVARVNAGDITEDLLGYSLVVHGKGNKQRVVP 119
Query 236 ISDYLAALIRDTPH---GYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAY 292
I+D LAA IRD G++FP GGH+T + KL + LP TMHTLRHR+ T AY
Sbjct 120 ITDGLAASIRDLAEPGTGWVFPGADGGHVTPRWISKLGANLLPSPWTMHTLRHRFGTHAY 179
Query 293 RGSHNLRAVQQLLGHASIVTTERYTALCDDEVRAAAAAA 331
G +L AVQ+LLGHAS+ TT+RY D +R AA +A
Sbjct 180 AGDRDLVAVQRLLGHASVSTTQRYVEPPSDAMRRAANSA 218
>gi|46190201|ref|ZP_00121752.2| COG0582: Integrase [Bifidobacterium longum DJO10A]
Length=206
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/208 (41%), Positives = 112/208 (54%), Gaps = 5/208 (2%)
Query 100 LCAAAHGLGRPPADVTAEHLLDWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVA 159
+ A + L P DV + LL + PE RK ++ +F W R +
Sbjct 1 MSALSRALEGDPRDVEGDDLLAHFAAKD-WKPETRKGAKNACVSYFRWLKASGRSEADPS 59
Query 160 DSLPKVRCPKQPPRPAGDDVWQAALAKADRRIELMIRLAGEAGLRRAEAAQAHTGDLMD- 218
+ LP V+ P+ PRP D V AAL KA LM+RL E GLRR E A+ H+ D+M
Sbjct 60 EFLPTVKRPEPHPRPCPDVVILAALRKATDGERLMLRLGAECGLRRFEIAKVHSRDVMRD 119
Query 219 --GGLLLVHGKGGKRRIVPISDYLAALIRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPG 276
G L+V GKG K+RIVPI D LA LIR + +GYLFP GH+ + +VG+ +S L
Sbjct 120 LVGWSLVVVGKGDKQRIVPIGDDLALLIR-SANGYLFPGRWSGHVESSYVGRHLSDLLGD 178
Query 277 DATMHTLRHRYATRAYRGSHNLRAVQQL 304
T H+LRHRYAT Y + +L V +L
Sbjct 179 GWTAHSLRHRYATTTYAATRDLLLVSKL 206
>gi|62860892|gb|AAY16485.1| site-specific recombinase [Bifidobacterium breve]
Length=229
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/155 (49%), Positives = 96/155 (62%), Gaps = 4/155 (2%)
Query 179 VWQAALAKADRRIELMIRLAGEAGLRRAEAAQAHTGDLMD---GGLLLVHGKGGKRRIVP 235
V AAL KA LM+RL E GLRR E A+ H+ D+M G L+V GKG K+RIVP
Sbjct 71 VILAALRKATDGERLMLRLGAECGLRRLEIAKVHSRDVMRDLVGWSLVVVGKGDKQRIVP 130
Query 236 ISDYLAALIRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGS 295
I D LA LIR + HGY FP H+ + ++G+ +S L T H+LRHRYAT Y +
Sbjct 131 IGDDLALLIR-SAHGYCFPGRWSRHVESSYIGRRLSTLLGDGWTAHSLRHRYATTTYAAT 189
Query 296 HNLRAVQQLLGHASIVTTERYTALCDDEVRAAAAA 330
+ V +LLGHAS+ TT+RY A+ DD +RAA A
Sbjct 190 RDPLLVSKLLGHASVETTQRYIAMPDDRLRAAVEA 224
>gi|338754394|gb|AEI97383.1| integrase/recombinse [Bifidobacterium longum subsp. longum KACC
91563]
Length=311
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/272 (32%), Positives = 132/272 (49%), Gaps = 12/272 (4%)
Query 67 HAPP--SWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLLDWLG 124
H P W+ I+ ++ ++A G+ T+R R + + + + DVT + L+ +L
Sbjct 13 HVEPREDWKESIEKWIDWMDAIGRTNDTLRTRWYQIVRFSKAVDKSITDVTEDDLIFYLA 72
Query 125 KQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVWQAAL 184
+ EGR+ RS ++ F+ W+ + R AD +P V ++ + L
Sbjct 73 G---MGTEGRRGVRSCVKVFYQWSMKRGLARRNPADEVPTVPMTLPSGCICPEENIEQGL 129
Query 185 AKADRRIELMIRLAGEAGLRRAEAAQAH-TGDL---MDGGLLLVHGKGGKRRIVPISDYL 240
A D L + L GLRR E + + DL +G +L VHGKG K RI+P+ L
Sbjct 130 ASPDENARLAVMLGAFCGLRRIEMTRINLKTDLEENAEGMVLHVHGKGNKERILPVPARL 189
Query 241 AALIRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRA-YRGSHNLR 299
AA +R +LFP GH ++V K + A + H+LR R+AT YR N+
Sbjct 190 AATLRKRTGVWLFPGDVQGHCGVDYVAKRIKTATGYPS--HSLRRRFATCVYYRNGCNIV 247
Query 300 AVQQLLGHASIVTTERYTALCDDEVRAAAAAA 331
V ++LGHASI TT RY L DE+R A +
Sbjct 248 LVSRMLGHASIATTMRYIGLVQDEMRNAVEST 279
>gi|294787223|ref|ZP_06752476.1| putative phage integrase family protein [Parascardovia denticolens
F0305]
gi|315227229|ref|ZP_07869016.1| possible integrase [Parascardovia denticolens DSM 10105]
gi|294484579|gb|EFG32214.1| putative phage integrase family protein [Parascardovia denticolens
F0305]
gi|315119679|gb|EFT82812.1| possible integrase [Parascardovia denticolens DSM 10105]
Length=280
Score = 119 bits (299), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 82/269 (31%), Positives = 127/269 (48%), Gaps = 7/269 (2%)
Query 63 PPSLHAPPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLLDW 122
P P W +D ++ L G PATI + A L +P ++ E ++D+
Sbjct 4 PTHRQPPQEWVPLLDQWVKYLRIRGCTPATIENWWYNVSRLALILNKPVYQISDEDIIDY 63
Query 123 LGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVWQA 182
+ + LS G + R+ FF + D +LPKV+ K RPA +
Sbjct 64 MDRG--LSANGIRNNRNAFNSFFDYLITAGLREDNPLAALPKVKRDKHKMRPASRQQVEK 121
Query 183 ALAKADRRIELMIRLAGEAGLRRAEAAQAHTGDLMDGG---LLLVHGKGGKRRIVPISDY 239
L D LM+ + + G+RR+E AQ DL+ +++HGKG K RI+P+S
Sbjct 122 GLHDPDPTARLMVMMLADLGVRRSELAQIRKEDLIQEDKYTTIIIHGKGDKDRILPLSQR 181
Query 240 LAALIRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLR 299
L ++ P GYLFP GH+ + V + V RA AT H +R R+AT + + +
Sbjct 182 LQQILTAMPDGYLFPGRFHGHVHPDTVYRYVKRA--TGATPHAIRRRFATDLWHATGDAV 239
Query 300 AVQQLLGHASIVTTERYTALCDDEVRAAA 328
VQ +LGH S+ TT+ Y D+++ A
Sbjct 240 KVQGMLGHESLATTQAYIYSTQDDLKQAV 268
>gi|300742464|ref|ZP_07072485.1| phage integrase family protein [Rothia dentocariosa M567]
gi|300381649|gb|EFJ78211.1| phage integrase family protein [Rothia dentocariosa M567]
Length=225
Score = 119 bits (298), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 75/215 (35%), Positives = 107/215 (50%), Gaps = 3/215 (1%)
Query 114 VTAEHLLDWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPR 173
+T + ++ WL + P RK+ ++ FF + + D +P + P+ R
Sbjct 3 ITDKQVIKWLANP-NWQPATRKSALQSIHLFFRYLISTETREDDPTHLIPSIPQPRYHSR 61
Query 174 PAGDDVWQAALAKADR-RIELMIRLAGEAGLRRAEAAQAHTGDLMDGGLLLVHGKGGKRR 232
V AL + E MI L AGLRR+E A HT + D + + GKGG R
Sbjct 62 AIPSSVITQALRRTTSVEEEFMILLGAYAGLRRSEIAALHTQNYADKWISIT-GKGGHTR 120
Query 233 IVPISDYLAALIRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAY 292
+P L + GY F GH +A+++ K +SR L D T H LRH +AT Y
Sbjct 121 HIPAHALLLPYLESKSTGYYFAGRFTGHRSADNIAKKISRNLGQDYTPHQLRHWFATTVY 180
Query 293 RGSHNLRAVQQLLGHASIVTTERYTALCDDEVRAA 327
SHNLRAVQ+LLGHA I TT+RY + D+++ A
Sbjct 181 AESHNLRAVQELLGHADISTTQRYIGVLDNDLSTA 215
>gi|227547361|ref|ZP_03977410.1| integrase/recombinase [Bifidobacterium longum subsp. infantis
ATCC 55813]
gi|227212176|gb|EEI80072.1| integrase/recombinase [Bifidobacterium longum subsp. infantis
ATCC 55813]
Length=325
Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/272 (31%), Positives = 133/272 (49%), Gaps = 12/272 (4%)
Query 67 HAPP--SWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLLDWLG 124
H P W+ I+ ++ ++A G+ T+R R + + + + DVT + L+ +L
Sbjct 27 HVEPREDWKESIEKWIDWMDAIGRTNDTLRTRWYQIVRFSKAVDKSITDVTEDDLIFYLA 86
Query 125 KQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVWQAAL 184
+ EGR+ RS ++ F+ W+ + R AD +P V ++ + L
Sbjct 87 G---MGTEGRRGVRSCVKVFYQWSMKRGLARRNPADEVPTVPMTLPSGCICPEENIEQGL 143
Query 185 AKADRRIELMIRLAGEAGLRRAEAA----QAHTGDLMDGGLLLVHGKGGKRRIVPISDYL 240
A D L + L GLRR E +A + +G +L VHGKG K R++P+ L
Sbjct 144 ASPDENARLAVMLGAFCGLRRIEMTRINLKADLEENAEGMVLHVHGKGNKERMLPVPAKL 203
Query 241 AALIRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRA-YRGSHNLR 299
A+ +R +LFP GH ++V K + + + G + H+LR R+AT YR N+
Sbjct 204 ASALRKRTGVWLFPGDVQGHCGVDYVAKRI-KTVTGYPS-HSLRRRFATCVYYRNGCNIV 261
Query 300 AVQQLLGHASIVTTERYTALCDDEVRAAAAAA 331
V ++LGHA+I TT RY L DE+R A +
Sbjct 262 LVSRMLGHANIATTMRYIGLVQDEMRNAVEST 293
>gi|23466014|ref|NP_696617.1| integrase/recombinse [Bifidobacterium longum NCC2705]
gi|23326733|gb|AAN25253.1| probable integrase/recombinse [Bifidobacterium longum NCC2705]
gi|291516786|emb|CBK70402.1| Site-specific recombinase XerD [Bifidobacterium longum subsp.
longum F8]
Length=311
Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/272 (31%), Positives = 134/272 (50%), Gaps = 12/272 (4%)
Query 67 HAPP--SWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLLDWLG 124
H P W+ I+ ++ ++A G+ T+R R + + + + DVT + L+ +L
Sbjct 13 HVEPREDWKESIEKWIDWMDAIGRTNDTLRTRWYQIVRFSKAVDKSITDVTEDDLIFYLA 72
Query 125 KQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVWQAAL 184
+ EGR+ RS ++ F+ W+ + R AD +P V ++ + L
Sbjct 73 G---MGTEGRRGVRSCVKVFYQWSMKRGLARRNPADEVPTVPMTLPSGCICPEENIEQGL 129
Query 185 AKADRRIELMIRLAGEAGLRRAEAAQAH-TGDL---MDGGLLLVHGKGGKRRIVPISDYL 240
A D L + L GLRR E + + DL +G +L VHGKG K R++P+ L
Sbjct 130 ASPDENARLAVMLGAFCGLRRIEMTRINLKTDLEENAEGMVLHVHGKGNKERMLPVPAKL 189
Query 241 AALIRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRA-YRGSHNLR 299
A+ +R +LFP GH ++V K + + + G + H+LR R+AT YR N+
Sbjct 190 ASALRKRTGVWLFPGDVQGHCGVDYVAKRI-KTVTGYPS-HSLRRRFATCVYYRNGCNIV 247
Query 300 AVQQLLGHASIVTTERYTALCDDEVRAAAAAA 331
V ++LGHA+I TT RY L DE+R A +
Sbjct 248 LVSRMLGHANIATTMRYIGLVQDEMRNAVEST 279
>gi|269219930|ref|ZP_06163784.1| integrase/recombinase XerC [Actinomyces sp. oral taxon 848 str.
F0332]
gi|269210670|gb|EEZ77010.1| integrase/recombinase XerC [Actinomyces sp. oral taxon 848 str.
F0332]
Length=160
Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/157 (46%), Positives = 94/157 (60%), Gaps = 10/157 (6%)
Query 183 ALAKADRRIELMIRLAGEAGLRRAEAAQAHTGDLMD---GGLLLVHGKGGKRRIVPI--- 236
AL++ R L++RLA GLR E A DL++ G L+VHGKGG+ R VP+
Sbjct 5 ALSEIPPREALILRLAAFMGLRCTEIAAVSAPDLIEDLFGPALVVHGKGGRLRTVPVPAH 64
Query 237 --SDYLAALIRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRG 294
D +A R+ +LFP GHL+A + KL R LP TMHTLRHR+AT+AYR
Sbjct 65 LHGDLVAGFKRNG--FWLFPGKDNGHLSARWISKLGGRCLPQGWTMHTLRHRFATKAYRT 122
Query 295 SHNLRAVQQLLGHASIVTTERYTALCDDEVRAAAAAA 331
H+L AVQ+LLGHASI TT+RY ++ +R A A
Sbjct 123 DHDLIAVQRLLGHASIETTQRYVEPVNNAMRRAVEGA 159
>gi|294791432|ref|ZP_06756589.1| probable integrase/recombinase [Scardovia inopinata F0304]
gi|294457903|gb|EFG26257.1| probable integrase/recombinase [Scardovia inopinata F0304]
Length=311
Score = 115 bits (288), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 84/272 (31%), Positives = 132/272 (49%), Gaps = 12/272 (4%)
Query 67 HAPP--SWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLLDWLG 124
H P W+ I+ ++ ++A G+ T+R R + + + + DVT + L+ +L
Sbjct 13 HVEPREDWKESIEKWIDWMDAIGRTNETLRTRWYQIVRFSKAVDKSITDVTEDDLIFYLA 72
Query 125 KQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVWQAAL 184
+ EGR+ S ++ F+ W+ + R AD +P V ++ + L
Sbjct 73 G---MGTEGRRGVHSCVKVFYQWSMKRGIARCNPADEVPTVPMTLPSGCICPEENIEQGL 129
Query 185 AKADRRIELMIRLAGEAGLRRAEAAQAH-TGDL---MDGGLLLVHGKGGKRRIVPISDYL 240
A D L + L GLRR E + + DL +G +L VHGK K RI+P+ L
Sbjct 130 ASPDEDARLAVMLGAFCGLRRIEMTRINLKTDLEENAEGMVLHVHGKDNKERILPVPARL 189
Query 241 AALIRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRA-YRGSHNLR 299
+A +R +LFP GH ++V K + A + H+LR R+AT A YR N+
Sbjct 190 SATLRKRTGVWLFPGDVQGHCGVDYVAKRIKTATGYPS--HSLRRRFATCAYYRNGCNIV 247
Query 300 AVQQLLGHASIVTTERYTALCDDEVRAAAAAA 331
V ++LGHA+I TT RY L DE+R A +A
Sbjct 248 LVSRMLGHANIATTMRYIGLVQDEMRNAVESA 279
>gi|189439200|ref|YP_001954281.1| Integrase [Bifidobacterium longum DJO10A]
gi|189427635|gb|ACD97783.1| Integrase [Bifidobacterium longum DJO10A]
Length=311
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/272 (31%), Positives = 133/272 (49%), Gaps = 12/272 (4%)
Query 67 HAPP--SWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLLDWLG 124
H P W+ I+ ++ ++A G+ T+R R + + + + DVT + L+ +L
Sbjct 13 HVEPREDWKESIEKWIDWMDAIGRTNDTLRTRWYQIVRFSKAVDKSITDVTEDDLIFYLA 72
Query 125 KQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVWQAAL 184
+ EGR+ RS ++ F+ W+ + AD +P V ++ + L
Sbjct 73 G---MGTEGRRGVRSCVKVFYQWSMKRGLAHCNPADEVPTVPMTLPSGCICPEENIEQGL 129
Query 185 AKADRRIELMIRLAGEAGLRRAEAAQAH-TGDL---MDGGLLLVHGKGGKRRIVPISDYL 240
A D L + L GLRR E + + DL +G +L VHGKG K R++P+ L
Sbjct 130 ASPDENARLAVMLGAFCGLRRIEMTRINLKTDLEENAEGMVLHVHGKGNKERMLPVPAKL 189
Query 241 AALIRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRA-YRGSHNLR 299
A+ +R +LFP GH ++V K + + + G + H+LR R+AT YR N+
Sbjct 190 ASALRKRTGVWLFPGDVQGHCGVDYVAKRI-KTVTGYPS-HSLRRRFATCVYYRNGCNIV 247
Query 300 AVQQLLGHASIVTTERYTALCDDEVRAAAAAA 331
V ++LGHA+I TT RY L DE+R A +
Sbjct 248 LVSRMLGHANIATTMRYIGLVQDEMRNAVEST 279
>gi|291455958|ref|ZP_06595348.1| integrase/recombinase protein [Bifidobacterium breve DSM 20213]
gi|291382367|gb|EFE89885.1| integrase/recombinase protein [Bifidobacterium breve DSM 20213]
gi|339478517|gb|ABE94972.1| DNA integration/recombination/inversion protein [Bifidobacterium
breve UCC2003]
Length=225
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/213 (32%), Positives = 110/213 (52%), Gaps = 10/213 (4%)
Query 69 PPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLLDWLGKQQH 128
P SW + ID+++L++ A T+ + A +PP V+ + WL +
Sbjct 11 PASWTKLIDEWVLDMQARCLTERTVESYWYRVTDFARVCSKPPRQVSPVDVQSWL-TESD 69
Query 129 LSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPR-PAGDDVWQAALAKA 187
L + R+++ F+ WA +++++ SLP ++ PK+P + PA + A +
Sbjct 70 LDASAKAGRRASINEFYKWAVRSNKMKNNPVASLPPIKRPKKPTKQPAPESAVAAGVWAE 129
Query 188 DRRIELMIRLAGEAGLRRAEAAQAHTGDLMDG-------GLLLVHGKGGKRRIVPISDYL 240
+ + LM+RL EAGLRR E ++ D+++ LLVHGKGGK RIVPIS+ L
Sbjct 130 NLKARLMVRLDAEAGLRREEISKVKGPDVIESVHAGESIYHLLVHGKGGKTRIVPISNDL 189
Query 241 AALIRDTP-HGYLFPNGTGGHLTAEHVGKLVSR 272
A IR T G+LFP GH +H +++ R
Sbjct 190 AQEIRSTAGEGWLFPGKVDGHCCVDHAYRVIKR 222
>gi|311063475|ref|YP_003970200.1| DNA integration/recombination/inversion protein [Bifidobacterium
bifidum PRL2010]
gi|310865794|gb|ADP35163.1| DNA integration/recombination/inversion protein [Bifidobacterium
bifidum PRL2010]
Length=313
Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/269 (32%), Positives = 128/269 (48%), Gaps = 18/269 (6%)
Query 72 WRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLLDWLGKQQHLSP 131
W ++ +L ++ A G+ P T+R R + + + RP V A+ ++ + Q +
Sbjct 22 WGESVEQWLSSMLAIGRTPETLRTRWYQIARFSRIVDRPIDQVDADAVIAFF-LQSSMDL 80
Query 132 EGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAG-----DDVWQAALAK 186
E ++ R+ ++ F+ WA V +AD P P P RP G + L
Sbjct 81 EVKRNARACVKVFYQWA-----VAHRIADHNPIDEVPVIPTRPRGWLICPEHAINEGLKS 135
Query 187 ADRRIELMIRLAGEAGLRRAEAAQAHTG-DLMDG---GLLLVHGKGGKRRIVPISDYLAA 242
D L + GLRR E AQ + D+ D LLVHGKG K R++P+ LA
Sbjct 136 QDEDAVLAVMFGAWMGLRRLEMAQINIATDIEDNPEEMRLLVHGKGIKERVLPVPGELAR 195
Query 243 LIRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRA-YRGSHNLRAV 301
IR ++FP GH A++VG + A + H+LR R+AT A YR ++ V
Sbjct 196 AIRRRGGDWIFPGRFDGHACADYVGTRIKEATSFPS--HSLRRRFATFAYYRTGCDILLV 253
Query 302 QQLLGHASIVTTERYTALCDDEVRAAAAA 330
QLLGH+S+ TT RY + D +R A A
Sbjct 254 SQLLGHSSVSTTMRYIGINTDLMRDAMEA 282
Lambda K H
0.321 0.136 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 592843174656
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40