BLAST Search Results


BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2647

Length=122
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|148823840|ref|YP_001288594.1|  hypothetical protein TBFG_12665...   248    2e-64
gi|15609784|ref|NP_217163.1|  hypothetical protein Rv2647 [Mycoba...   248    2e-64
gi|167966928|ref|ZP_02549205.1|  hypothetical protein MtubH3_0225...   227    6e-58
gi|294994257|ref|ZP_06799948.1|  hypothetical protein Mtub2_07013...   219    1e-55
gi|289751272|ref|ZP_06510650.1|  conserved hypothetical protein [...   210    6e-53
gi|289762821|ref|ZP_06522199.1|  conserved hypothetical protein [...   207    4e-52
gi|254232758|ref|ZP_04926085.1|  hypothetical protein TBCG_02589 ...   202    2e-50
gi|308376131|ref|ZP_07668199.1|  hypothetical protein TMGG_03957 ...   118    3e-25
gi|308380117|ref|ZP_07488758.2|  hypothetical protein TMKG_02080 ...   118    4e-25
gi|289753662|ref|ZP_06513040.1|  phiRV1 phage protein [Mycobacter...   117    8e-25
gi|289447184|ref|ZP_06436928.1|  phiRv1 phage protein [Mycobacter...  87.4    6e-16
gi|308376130|ref|ZP_07668198.1|  hypothetical protein TMGG_03956 ...  73.9    8e-12
gi|15843076|ref|NP_338113.1|  hypothetical protein MT3573.13 [Myc...  66.6    1e-09
gi|323717862|gb|EGB27052.1|  PhiRV1 phage protein [Mycobacterium ...  63.5    1e-08
gi|15843077|ref|NP_338114.1|  hypothetical protein MT3573.14 [Myc...  58.5    3e-07
gi|15608712|ref|NP_216090.1|  phiRV1 phage related protein [Mycob...  55.8    2e-06
gi|289569616|ref|ZP_06449843.1|  phiRv1 phage protein [Mycobacter...  46.2    0.001
gi|148661370|ref|YP_001282893.1|  putative phiRv1 phage protein [...  46.2    0.002
gi|57116889|ref|NP_216091.2|  phiRV1 phage protein [Mycobacterium...  46.2    0.002
gi|167967373|ref|ZP_02549650.1|  Probable phiRV1 phage protein [M...  46.2    0.002
gi|289762820|ref|ZP_06522198.1|  integrase [Mycobacterium tubercu...  45.4    0.003
gi|326331501|ref|ZP_08197791.1|  hypothetical protein NBCG_02941 ...  38.1    0.45 
gi|114319803|ref|YP_741486.1|  hypothetical protein Mlg_0642 [Alk...  37.0    0.95 
gi|296395179|ref|YP_003660063.1|  hypothetical protein Srot_2800 ...  36.2    1.7  
gi|333998793|ref|YP_004531405.1|  transcriptional repressor prote...  35.8    2.0  
gi|326330162|ref|ZP_08196473.1|  LigA [Nocardioidaceae bacterium ...  35.4    3.0  
gi|75812858|ref|YP_320475.1|  hypothetical protein Ava_C0201 [Ana...  35.0    3.9  
gi|343097525|emb|CCC85734.1|  putative plasmid-partitioning prote...  35.0    4.1  
gi|17158796|ref|NP_478307.1|  hypothetical protein all7660 [Nosto...  34.7    4.2  
gi|172039701|ref|YP_001799415.1|  putative resolvase [Corynebacte...  34.3    6.2  


>gi|148823840|ref|YP_001288594.1| hypothetical protein TBFG_12665 [Mycobacterium tuberculosis F11]
 gi|253798269|ref|YP_003031270.1| hypothetical protein TBMG_01324 [Mycobacterium tuberculosis KZN 
1435]
 gi|254365313|ref|ZP_04981358.1| hypothetical protein TBHG_02584 [Mycobacterium tuberculosis str. 
Haarlem]
 36 more sequence titles
 gi|254551702|ref|ZP_05142149.1| hypothetical protein Mtube_14799 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|289746450|ref|ZP_06505828.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|297635259|ref|ZP_06953039.1| hypothetical protein MtubK4_14105 [Mycobacterium tuberculosis 
KZN 4207]
 gi|297732255|ref|ZP_06961373.1| hypothetical protein MtubKR_14254 [Mycobacterium tuberculosis 
KZN R506]
 gi|306776926|ref|ZP_07415263.1| hypothetical protein TMAG_02457 [Mycobacterium tuberculosis SUMu001]
 gi|306780831|ref|ZP_07419168.1| hypothetical protein TMBG_02788 [Mycobacterium tuberculosis SUMu002]
 gi|306785455|ref|ZP_07423777.1| hypothetical protein TMCG_01896 [Mycobacterium tuberculosis SUMu003]
 gi|306790053|ref|ZP_07428375.1| hypothetical protein TMDG_00366 [Mycobacterium tuberculosis SUMu004]
 gi|306794136|ref|ZP_07432438.1| hypothetical protein TMEG_03328 [Mycobacterium tuberculosis SUMu005]
 gi|306798552|ref|ZP_07436854.1| hypothetical protein TMFG_03896 [Mycobacterium tuberculosis SUMu006]
 gi|306804412|ref|ZP_07441080.1| hypothetical protein TMHG_01845 [Mycobacterium tuberculosis SUMu008]
 gi|306807548|ref|ZP_07444216.1| hypothetical protein TMGG_02222 [Mycobacterium tuberculosis SUMu007]
 gi|306968702|ref|ZP_07481363.1| hypothetical protein TMIG_03978 [Mycobacterium tuberculosis SUMu009]
 gi|306973041|ref|ZP_07485702.1| hypothetical protein TMJG_01631 [Mycobacterium tuberculosis SUMu010]
 gi|307080751|ref|ZP_07489921.1| hypothetical protein TMKG_03080 [Mycobacterium tuberculosis SUMu011]
 gi|307085339|ref|ZP_07494452.1| hypothetical protein TMLG_02377 [Mycobacterium tuberculosis SUMu012]
 gi|313659588|ref|ZP_07816468.1| hypothetical protein MtubKV_14259 [Mycobacterium tuberculosis 
KZN V2475]
 gi|134150826|gb|EBA42871.1| hypothetical protein TBHG_02584 [Mycobacterium tuberculosis str. 
Haarlem]
 gi|148722367|gb|ABR06992.1| hypothetical protein TBFG_12665 [Mycobacterium tuberculosis F11]
 gi|253319772|gb|ACT24375.1| hypothetical protein TBMG_01324 [Mycobacterium tuberculosis KZN 
1435]
 gi|289686978|gb|EFD54466.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|308214700|gb|EFO74099.1| hypothetical protein TMAG_02457 [Mycobacterium tuberculosis SUMu001]
 gi|308326335|gb|EFP15186.1| hypothetical protein TMBG_02788 [Mycobacterium tuberculosis SUMu002]
 gi|308329878|gb|EFP18729.1| hypothetical protein TMCG_01896 [Mycobacterium tuberculosis SUMu003]
 gi|308333495|gb|EFP22346.1| hypothetical protein TMDG_00366 [Mycobacterium tuberculosis SUMu004]
 gi|308337529|gb|EFP26380.1| hypothetical protein TMEG_03328 [Mycobacterium tuberculosis SUMu005]
 gi|308341195|gb|EFP30046.1| hypothetical protein TMFG_03896 [Mycobacterium tuberculosis SUMu006]
 gi|308346042|gb|EFP34893.1| hypothetical protein TMGG_02222 [Mycobacterium tuberculosis SUMu007]
 gi|308349005|gb|EFP37856.1| hypothetical protein TMHG_01845 [Mycobacterium tuberculosis SUMu008]
 gi|308353730|gb|EFP42581.1| hypothetical protein TMIG_03978 [Mycobacterium tuberculosis SUMu009]
 gi|308357573|gb|EFP46424.1| hypothetical protein TMJG_01631 [Mycobacterium tuberculosis SUMu010]
 gi|308361516|gb|EFP50367.1| hypothetical protein TMKG_03080 [Mycobacterium tuberculosis SUMu011]
 gi|308365130|gb|EFP53981.1| hypothetical protein TMLG_02377 [Mycobacterium tuberculosis SUMu012]
 gi|323718761|gb|EGB27920.1| hypothetical protein TMMG_02660 [Mycobacterium tuberculosis CDC1551A]
 gi|339295520|gb|AEJ47631.1| hypothetical protein CCDC5079_2441 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339299138|gb|AEJ51248.1| hypothetical protein CCDC5180_2411 [Mycobacterium tuberculosis 
CCDC5180]
Length=154

 Score =  248 bits (633),  Expect = 2e-64, Method: Compositional matrix adjust.
 Identities = 122/122 (100%), Positives = 122/122 (100%), Gaps = 0/122 (0%)

Query  1    VHVCHTIADVVDRAKAERSENTLRKDFTPSELLAAGRRIAELERPKAKQRQREGGDHGRQ  60
            VHVCHTIADVVDRAKAERSENTLRKDFTPSELLAAGRRIAELERPKAKQRQREGGDHGRQ
Sbjct  33   VHVCHTIADVVDRAKAERSENTLRKDFTPSELLAAGRRIAELERPKAKQRQREGGDHGRQ  92

Query  61   ARYSGLGSMEPKPESERDAHKADTAISEALGISRGHYQRLKRIDNATRSEAGYRDGLNGW  120
            ARYSGLGSMEPKPESERDAHKADTAISEALGISRGHYQRLKRIDNATRSEAGYRDGLNGW
Sbjct  93   ARYSGLGSMEPKPESERDAHKADTAISEALGISRGHYQRLKRIDNATRSEAGYRDGLNGW  152

Query  121  SG  122
            SG
Sbjct  153  SG  154


>gi|15609784|ref|NP_217163.1| hypothetical protein Rv2647 [Mycobacterium tuberculosis H37Rv]
 gi|15842188|ref|NP_337225.1| hypothetical protein MT2725 [Mycobacterium tuberculosis CDC1551]
 gi|148662488|ref|YP_001284011.1| hypothetical protein MRA_2676 [Mycobacterium tuberculosis H37Ra]
 18 more sequence titles
 gi|289444190|ref|ZP_06433934.1| hypothetical protein TBLG_01292 [Mycobacterium tuberculosis T46]
 gi|289448304|ref|ZP_06438048.1| integrase [Mycobacterium tuberculosis CPHL_A]
 gi|289553564|ref|ZP_06442774.1| hypothetical protein TBXG_01314 [Mycobacterium tuberculosis KZN 
605]
 gi|289570822|ref|ZP_06451049.1| hypothetical protein TBJG_04236 [Mycobacterium tuberculosis T17]
 gi|289758777|ref|ZP_06518155.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298526122|ref|ZP_07013531.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|1550688|emb|CAB02355.1| HYPOTHETICAL PROTEIN Rv2647 [Mycobacterium tuberculosis H37Rv]
 gi|13882476|gb|AAK47039.1| hypothetical protein MT2725 [Mycobacterium tuberculosis CDC1551]
 gi|148506640|gb|ABQ74449.1| hypothetical protein MRA_2676 [Mycobacterium tuberculosis H37Ra]
 gi|289417109|gb|EFD14349.1| hypothetical protein TBLG_01292 [Mycobacterium tuberculosis T46]
 gi|289421262|gb|EFD18463.1| integrase [Mycobacterium tuberculosis CPHL_A]
 gi|289438196|gb|EFD20689.1| hypothetical protein TBXG_01314 [Mycobacterium tuberculosis KZN 
605]
 gi|289544576|gb|EFD48224.1| hypothetical protein TBJG_04236 [Mycobacterium tuberculosis T17]
 gi|289714341|gb|EFD78353.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298495916|gb|EFI31210.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|326904261|gb|EGE51194.1| hypothetical protein TBPG_02159 [Mycobacterium tuberculosis W-148]
 gi|328458041|gb|AEB03464.1| hypothetical protein TBSG_01335 [Mycobacterium tuberculosis KZN 
4207]
 gi|344220476|gb|AEN01107.1| hypothetical protein MTCTRI2_2701 [Mycobacterium tuberculosis 
CTRI-2]
Length=122

 Score =  248 bits (633),  Expect = 2e-64, Method: Compositional matrix adjust.
 Identities = 121/122 (99%), Positives = 122/122 (100%), Gaps = 0/122 (0%)

Query  1    VHVCHTIADVVDRAKAERSENTLRKDFTPSELLAAGRRIAELERPKAKQRQREGGDHGRQ  60
            +HVCHTIADVVDRAKAERSENTLRKDFTPSELLAAGRRIAELERPKAKQRQREGGDHGRQ
Sbjct  1    MHVCHTIADVVDRAKAERSENTLRKDFTPSELLAAGRRIAELERPKAKQRQREGGDHGRQ  60

Query  61   ARYSGLGSMEPKPESERDAHKADTAISEALGISRGHYQRLKRIDNATRSEAGYRDGLNGW  120
            ARYSGLGSMEPKPESERDAHKADTAISEALGISRGHYQRLKRIDNATRSEAGYRDGLNGW
Sbjct  61   ARYSGLGSMEPKPESERDAHKADTAISEALGISRGHYQRLKRIDNATRSEAGYRDGLNGW  120

Query  121  SG  122
            SG
Sbjct  121  SG  122


>gi|167966928|ref|ZP_02549205.1| hypothetical protein MtubH3_02255 [Mycobacterium tuberculosis 
H37Ra]
Length=113

 Score =  227 bits (578),  Expect = 6e-58, Method: Compositional matrix adjust.
 Identities = 112/113 (99%), Positives = 113/113 (100%), Gaps = 0/113 (0%)

Query  10   VVDRAKAERSENTLRKDFTPSELLAAGRRIAELERPKAKQRQREGGDHGRQARYSGLGSM  69
            +VDRAKAERSENTLRKDFTPSELLAAGRRIAELERPKAKQRQREGGDHGRQARYSGLGSM
Sbjct  1    MVDRAKAERSENTLRKDFTPSELLAAGRRIAELERPKAKQRQREGGDHGRQARYSGLGSM  60

Query  70   EPKPESERDAHKADTAISEALGISRGHYQRLKRIDNATRSEAGYRDGLNGWSG  122
            EPKPESERDAHKADTAISEALGISRGHYQRLKRIDNATRSEAGYRDGLNGWSG
Sbjct  61   EPKPESERDAHKADTAISEALGISRGHYQRLKRIDNATRSEAGYRDGLNGWSG  113


>gi|294994257|ref|ZP_06799948.1| hypothetical protein Mtub2_07013 [Mycobacterium tuberculosis 
210]
Length=119

 Score =  219 bits (557),  Expect = 1e-55, Method: Compositional matrix adjust.
 Identities = 109/109 (100%), Positives = 109/109 (100%), Gaps = 0/109 (0%)

Query  14   AKAERSENTLRKDFTPSELLAAGRRIAELERPKAKQRQREGGDHGRQARYSGLGSMEPKP  73
            AKAERSENTLRKDFTPSELLAAGRRIAELERPKAKQRQREGGDHGRQARYSGLGSMEPKP
Sbjct  11   AKAERSENTLRKDFTPSELLAAGRRIAELERPKAKQRQREGGDHGRQARYSGLGSMEPKP  70

Query  74   ESERDAHKADTAISEALGISRGHYQRLKRIDNATRSEAGYRDGLNGWSG  122
            ESERDAHKADTAISEALGISRGHYQRLKRIDNATRSEAGYRDGLNGWSG
Sbjct  71   ESERDAHKADTAISEALGISRGHYQRLKRIDNATRSEAGYRDGLNGWSG  119


>gi|289751272|ref|ZP_06510650.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289691859|gb|EFD59288.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=147

 Score =  210 bits (534),  Expect = 6e-53, Method: Compositional matrix adjust.
 Identities = 105/110 (96%), Positives = 106/110 (97%), Gaps = 0/110 (0%)

Query  1    VHVCHTIADVVDRAKAERSENTLRKDFTPSELLAAGRRIAELERPKAKQRQREGGDHGRQ  60
            VHVCHTIADVVDRAKAERSENTLRKDFTPSELLAAGRRIAELERPKAKQRQREGGDHGRQ
Sbjct  32   VHVCHTIADVVDRAKAERSENTLRKDFTPSELLAAGRRIAELERPKAKQRQREGGDHGRQ  91

Query  61   ARYSGLGSMEPKPESERDAHKADTAISEALGISRGHYQRLKRIDNATRSE  110
            ARYSGLGSMEPKPESERDAHKADTAI  ALGIS G Y+RLKRIDNATRSE
Sbjct  92   ARYSGLGSMEPKPESERDAHKADTAIGAALGISAGTYRRLKRIDNATRSE  141


>gi|289762821|ref|ZP_06522199.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|289710327|gb|EFD74343.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
Length=154

 Score =  207 bits (527),  Expect = 4e-52, Method: Compositional matrix adjust.
 Identities = 102/102 (100%), Positives = 102/102 (100%), Gaps = 0/102 (0%)

Query  21   NTLRKDFTPSELLAAGRRIAELERPKAKQRQREGGDHGRQARYSGLGSMEPKPESERDAH  80
            NTLRKDFTPSELLAAGRRIAELERPKAKQRQREGGDHGRQARYSGLGSMEPKPESERDAH
Sbjct  53   NTLRKDFTPSELLAAGRRIAELERPKAKQRQREGGDHGRQARYSGLGSMEPKPESERDAH  112

Query  81   KADTAISEALGISRGHYQRLKRIDNATRSEAGYRDGLNGWSG  122
            KADTAISEALGISRGHYQRLKRIDNATRSEAGYRDGLNGWSG
Sbjct  113  KADTAISEALGISRGHYQRLKRIDNATRSEAGYRDGLNGWSG  154


>gi|254232758|ref|ZP_04926085.1| hypothetical protein TBCG_02589 [Mycobacterium tuberculosis C]
 gi|124601817|gb|EAY60827.1| hypothetical protein TBCG_02589 [Mycobacterium tuberculosis C]
Length=155

 Score =  202 bits (513),  Expect = 2e-50, Method: Compositional matrix adjust.
 Identities = 104/123 (85%), Positives = 106/123 (87%), Gaps = 1/123 (0%)

Query  1    VHVCHTIADVVDRAKAERSENTLRKDFTPSELLAAGRRIAELERPKAKQRQREGGDHGRQ  60
            VHVCHTIADVVDRAKAERSENTLRKDFTPSELLAAGRRIAELERPKAKQRQREGGDHGRQ
Sbjct  33   VHVCHTIADVVDRAKAERSENTLRKDFTPSELLAAGRRIAELERPKAKQRQREGGDHGRQ  92

Query  61   ARYSGLGSMEPKPESERDAHKADTAISEALGISRGHYQR-LKRIDNATRSEAGYRDGLNG  119
            ARYSGLGSMEPKPESERDAHKADTAI+     S            +ATRSEAGYRDGLNG
Sbjct  93   ARYSGLGSMEPKPESERDAHKADTAITRKPSASPAATTSGSNESTDATRSEAGYRDGLNG  152

Query  120  WSG  122
            WSG
Sbjct  153  WSG  155


>gi|308376131|ref|ZP_07668199.1| hypothetical protein TMGG_03957 [Mycobacterium tuberculosis SUMu007]
 gi|308344215|gb|EFP33066.1| hypothetical protein TMGG_03957 [Mycobacterium tuberculosis SUMu007]
Length=163

 Score =  118 bits (295),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 62/77 (81%), Positives = 65/77 (85%), Gaps = 0/77 (0%)

Query  34   AAGRRIAELERPKAKQRQREGGDHGRQARYSGLGSMEPKPESERDAHKADTAISEALGIS  93
            AAGRRIAELERPKAKQRQREG DHGRQARYSGLG M  KPESER + K DTAI  ALGIS
Sbjct  26   AAGRRIAELERPKAKQRQREGQDHGRQARYSGLGPMGYKPESERHSTKTDTAIGAALGIS  85

Query  94   RGHYQRLKRIDNATRSE  110
             G Y+RLKRIDNAT S+
Sbjct  86   AGTYRRLKRIDNATHSD  102


>gi|308380117|ref|ZP_07488758.2| hypothetical protein TMKG_02080 [Mycobacterium tuberculosis SUMu011]
 gi|308362607|gb|EFP51458.1| hypothetical protein TMKG_02080 [Mycobacterium tuberculosis SUMu011]
Length=172

 Score =  118 bits (295),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 62/77 (81%), Positives = 65/77 (85%), Gaps = 0/77 (0%)

Query  34   AAGRRIAELERPKAKQRQREGGDHGRQARYSGLGSMEPKPESERDAHKADTAISEALGIS  93
            AAGRRIAELERPKAKQRQREG DHGRQARYSGLG M  KPESER + K DTAI  ALGIS
Sbjct  26   AAGRRIAELERPKAKQRQREGQDHGRQARYSGLGPMGYKPESERHSTKTDTAIGAALGIS  85

Query  94   RGHYQRLKRIDNATRSE  110
             G Y+RLKRIDNAT S+
Sbjct  86   AGTYRRLKRIDNATHSD  102


>gi|289753662|ref|ZP_06513040.1| phiRV1 phage protein [Mycobacterium tuberculosis EAS054]
 gi|289694249|gb|EFD61678.1| phiRV1 phage protein [Mycobacterium tuberculosis EAS054]
Length=141

 Score =  117 bits (292),  Expect = 8e-25, Method: Compositional matrix adjust.
 Identities = 62/77 (81%), Positives = 65/77 (85%), Gaps = 0/77 (0%)

Query  34   AAGRRIAELERPKAKQRQREGGDHGRQARYSGLGSMEPKPESERDAHKADTAISEALGIS  93
            AAGRRIAELERPKAKQRQREG DHGRQARYSGLG M  KPESER + K DTAI  ALGIS
Sbjct  26   AAGRRIAELERPKAKQRQREGQDHGRQARYSGLGPMGYKPESERHSTKTDTAIGAALGIS  85

Query  94   RGHYQRLKRIDNATRSE  110
             G Y+RLKRIDNAT S+
Sbjct  86   AGTYRRLKRIDNATHSD  102


>gi|289447184|ref|ZP_06436928.1| phiRv1 phage protein [Mycobacterium tuberculosis CPHL_A]
 gi|308400762|ref|ZP_07669403.1| hypothetical protein TMLG_00560 [Mycobacterium tuberculosis SUMu012]
 gi|289420142|gb|EFD17343.1| phiRv1 phage protein [Mycobacterium tuberculosis CPHL_A]
 gi|308366218|gb|EFP55069.1| hypothetical protein TMLG_00560 [Mycobacterium tuberculosis SUMu012]
Length=287

 Score = 87.4 bits (215),  Expect = 6e-16, Method: Compositional matrix adjust.
 Identities = 50/77 (65%), Positives = 56/77 (73%), Gaps = 4/77 (5%)

Query  34   AAGRRIAELERPKAKQRQREGGDHGRQARYSGLGSMEPKPESERDAHKADTAISEALGIS  93
            AAGRRIAELERPKAK+RQREGG  G     +G G MEPKP S+R     D  +  ALGIS
Sbjct  102  AAGRRIAELERPKAKERQREGGRLGASITNAGFGPMEPKP-SQRH---TDKEVGAALGIS  157

Query  94   RGHYQRLKRIDNATRSE  110
             G Y+RLKRIDNATRS+
Sbjct  158  AGTYKRLKRIDNATRSD  174


>gi|308376130|ref|ZP_07668198.1| hypothetical protein TMGG_03956 [Mycobacterium tuberculosis SUMu007]
 gi|308344237|gb|EFP33088.1| hypothetical protein TMGG_03956 [Mycobacterium tuberculosis SUMu007]
Length=178

 Score = 73.9 bits (180),  Expect = 8e-12, Method: Compositional matrix adjust.
 Identities = 41/69 (60%), Positives = 48/69 (70%), Gaps = 4/69 (5%)

Query  42   LERPKAKQRQREGGDHGRQARYSGLGSMEPKPESERDAHKADTAISEALGISRGHYQRLK  101
            +ERPKAK+RQREGG  G     +G G MEPKP S+R     D  +  ALGIS G Y+RLK
Sbjct  1    MERPKAKERQREGGRLGASITNAGFGPMEPKP-SQRH---TDKEVGAALGISAGTYKRLK  56

Query  102  RIDNATRSE  110
            RIDNATRS+
Sbjct  57   RIDNATRSD  65


>gi|15843076|ref|NP_338113.1| hypothetical protein MT3573.13 [Mycobacterium tuberculosis CDC1551]
 gi|13883421|gb|AAK47927.1| hypothetical protein MT3573.13 [Mycobacterium tuberculosis CDC1551]
Length=54

 Score = 66.6 bits (161),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 33/45 (74%), Positives = 36/45 (80%), Gaps = 0/45 (0%)

Query  66   LGSMEPKPESERDAHKADTAISEALGISRGHYQRLKRIDNATRSE  110
            +G M PKPESER + K DTAI  ALGIS G Y+RLKRIDNATRSE
Sbjct  1    MGPMGPKPESERRSTKTDTAIGAALGISAGTYRRLKRIDNATRSE  45


>gi|323717862|gb|EGB27052.1| PhiRV1 phage protein [Mycobacterium tuberculosis CDC1551A]
Length=51

 Score = 63.5 bits (153),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 32/42 (77%), Positives = 34/42 (81%), Gaps = 0/42 (0%)

Query  69   MEPKPESERDAHKADTAISEALGISRGHYQRLKRIDNATRSE  110
            M PKPESER + K DTAI  ALGIS G Y+RLKRIDNATRSE
Sbjct  1    MGPKPESERRSTKTDTAIGAALGISAGTYRRLKRIDNATRSE  42


>gi|15843077|ref|NP_338114.1| hypothetical protein MT3573.14 [Mycobacterium tuberculosis CDC1551]
 gi|167967374|ref|ZP_02549651.1| hypothetical protein MtubH3_04772 [Mycobacterium tuberculosis 
H37Ra]
 gi|13883422|gb|AAK47928.1| hypothetical protein MT3573.14 [Mycobacterium tuberculosis CDC1551]
Length=106

 Score = 58.5 bits (140),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 30/45 (67%), Positives = 34/45 (76%), Gaps = 0/45 (0%)

Query  66   LGSMEPKPESERDAHKADTAISEALGISRGHYQRLKRIDNATRSE  110
            +G M  KPESER + K DTAI  ALGIS G Y+RLKRIDNAT S+
Sbjct  1    MGPMGYKPESERHSTKTDTAIGAALGISAGTYRRLKRIDNATHSD  45


>gi|15608712|ref|NP_216090.1| phiRV1 phage related protein [Mycobacterium tuberculosis H37Rv]
 gi|31792760|ref|NP_855253.1| phiRV1 phage related protein [Mycobacterium bovis AF2122/97]
 gi|148661369|ref|YP_001282892.1| hypothetical protein MRA_1585 [Mycobacterium tuberculosis H37Ra]
 7 more sequence titles
 gi|289569615|ref|ZP_06449842.1| phiRv1 phage protein [Mycobacterium tuberculosis T17]
 gi|308377361|ref|ZP_07668497.1| hypothetical protein TMHG_04005 [Mycobacterium tuberculosis SUMu008]
 gi|2117263|emb|CAB09063.1| Probable phiRV1 phage related protein [Mycobacterium tuberculosis 
H37Rv]
 gi|31618350|emb|CAD96268.1| Probable phiRV1 phage related protein [Mycobacterium bovis AF2122/97]
 gi|148505521|gb|ABQ73330.1| hypothetical protein MRA_1585 [Mycobacterium tuberculosis H37Ra]
 gi|289543369|gb|EFD47017.1| phiRv1 phage protein [Mycobacterium tuberculosis T17]
 gi|308348144|gb|EFP36995.1| hypothetical protein TMHG_04005 [Mycobacterium tuberculosis SUMu008]
Length=103

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 28/39 (72%), Positives = 31/39 (80%), Gaps = 0/39 (0%)

Query  72   KPESERDAHKADTAISEALGISRGHYQRLKRIDNATRSE  110
            KPESER + K DTAI  ALGIS G Y+RLKRIDNAT S+
Sbjct  4    KPESERHSTKTDTAIGAALGISAGTYRRLKRIDNATHSD  42


>gi|289569616|ref|ZP_06449843.1| phiRv1 phage protein [Mycobacterium tuberculosis T17]
 gi|289543370|gb|EFD47018.1| phiRv1 phage protein [Mycobacterium tuberculosis T17]
Length=148

 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 26/42 (62%), Positives = 30/42 (72%), Gaps = 4/42 (9%)

Query  69   MEPKPESERDAHKADTAISEALGISRGHYQRLKRIDNATRSE  110
            MEPKP S+R     D  +  ALGIS G Y+RLKRIDNATRS+
Sbjct  1    MEPKP-SQRHT---DKEVGAALGISAGTYKRLKRIDNATRSD  38


>gi|148661370|ref|YP_001282893.1| putative phiRv1 phage protein [Mycobacterium tuberculosis H37Ra]
 gi|289443028|ref|ZP_06432772.1| phiRv1 phage protein [Mycobacterium tuberculosis T46]
 gi|308377360|ref|ZP_07668496.1| hypothetical protein TMHG_04004 [Mycobacterium tuberculosis SUMu008]
 gi|148505522|gb|ABQ73331.1| putative phiRv1 phage protein [Mycobacterium tuberculosis H37Ra]
 gi|289415947|gb|EFD13187.1| phiRv1 phage protein [Mycobacterium tuberculosis T46]
 gi|308348143|gb|EFP36994.1| hypothetical protein TMHG_04004 [Mycobacterium tuberculosis SUMu008]
Length=151

 Score = 46.2 bits (108),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 26/42 (62%), Positives = 30/42 (72%), Gaps = 4/42 (9%)

Query  69   MEPKPESERDAHKADTAISEALGISRGHYQRLKRIDNATRSE  110
            MEPKP S+R     D  +  ALGIS G Y+RLKRIDNATRS+
Sbjct  1    MEPKP-SQRHT---DKEVGAALGISAGTYKRLKRIDNATRSD  38


>gi|57116889|ref|NP_216091.2| phiRV1 phage protein [Mycobacterium tuberculosis H37Rv]
 gi|38684038|emb|CAB09062.2| Probable phiRV1 phage protein [Mycobacterium tuberculosis H37Rv]
Length=166

 Score = 46.2 bits (108),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 26/42 (62%), Positives = 30/42 (72%), Gaps = 4/42 (9%)

Query  69   MEPKPESERDAHKADTAISEALGISRGHYQRLKRIDNATRSE  110
            MEPKP S+R     D  +  ALGIS G Y+RLKRIDNATRS+
Sbjct  1    MEPKP-SQRHT---DKEVGAALGISAGTYKRLKRIDNATRSD  38


>gi|167967373|ref|ZP_02549650.1| Probable phiRV1 phage protein [Mycobacterium tuberculosis H37Ra]
Length=84

 Score = 46.2 bits (108),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 26/42 (62%), Positives = 30/42 (72%), Gaps = 4/42 (9%)

Query  69   MEPKPESERDAHKADTAISEALGISRGHYQRLKRIDNATRSE  110
            MEPKP S+R     D  +  ALGIS G Y+RLKRIDNATRS+
Sbjct  1    MEPKP-SQR---HTDKEVGAALGISAGTYKRLKRIDNATRSD  38


>gi|289762820|ref|ZP_06522198.1| integrase [Mycobacterium tuberculosis GM 1503]
 gi|289710326|gb|EFD74342.1| integrase [Mycobacterium tuberculosis GM 1503]
Length=435

 Score = 45.4 bits (106),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 21/29 (73%), Positives = 22/29 (76%), Gaps = 0/29 (0%)

Query  1    VHVCHTIADVVDRAKAERSENTLRKDFTP  29
            VHVCHTIADVVDRAKAERSE    +   P
Sbjct  371  VHVCHTIADVVDRAKAERSETRFARISPP  399


>gi|326331501|ref|ZP_08197791.1| hypothetical protein NBCG_02941 [Nocardioidaceae bacterium Broad-1]
 gi|325950757|gb|EGD42807.1| hypothetical protein NBCG_02941 [Nocardioidaceae bacterium Broad-1]
Length=314

 Score = 38.1 bits (87),  Expect = 0.45, Method: Compositional matrix adjust.
 Identities = 38/117 (33%), Positives = 54/117 (47%), Gaps = 14/117 (11%)

Query  1    VHVCHTIADVVDRAKAERSENTLRKDFTPSELLAAGRRIAELERPKAKQRQ---REGGDH  57
            V V   I+D +++  A + EN L K F+P+E     R + ++    A +RQ   R G   
Sbjct  73   VWVRSGISDQLNQLFALKDENLLHKPFSPTEAAELYRELKQVMEEDAARRQAATRFGAQA  132

Query  58   GRQARYSGLGSMEPKPESERDAHKADTAISEALGISRGHYQRLKRI----DNATRSE  110
                 + G+ S  P P   R   +A TAI+ A       +QRL RI    D AT SE
Sbjct  133  DHTGSHGGVDSTPPSPGKTR--AQASTAITGA-----DSHQRLDRIGEIQDVATASE  182


>gi|114319803|ref|YP_741486.1| hypothetical protein Mlg_0642 [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226197|gb|ABI55996.1| hypothetical protein Mlg_0642 [Alkalilimnicola ehrlichii MLHE-1]
Length=124

 Score = 37.0 bits (84),  Expect = 0.95, Method: Compositional matrix adjust.
 Identities = 17/27 (63%), Positives = 20/27 (75%), Gaps = 0/27 (0%)

Query  15  KAERSENTLRKDFTPSELLAAGRRIAE  41
           K ER EN +RKDFTPSE +A  +RI E
Sbjct  7   KIERDENDVRKDFTPSEKVAIAQRIEE  33


>gi|296395179|ref|YP_003660063.1| hypothetical protein Srot_2800 [Segniliparus rotundus DSM 44985]
 gi|296182326|gb|ADG99232.1| conserved hypothetical protein [Segniliparus rotundus DSM 44985]
Length=147

 Score = 36.2 bits (82),  Expect = 1.7, Method: Compositional matrix adjust.
 Identities = 30/105 (29%), Positives = 50/105 (48%), Gaps = 8/105 (7%)

Query  1    VHVCHTIADVVDRAKAERSENTLRKDFTPSELLAAGRRIAELERPKAKQRQREGGDHGRQ  60
            V    ++ +  D  +AE  ENT RK FTP+E  A    I    RP A++R++E    GR 
Sbjct  33   VTFVASLVEASDLLRAEADENTQRKPFTPTEAEAIASAIEAALRPVAQERRKET--QGRP  90

Query  61   ARYSGLGSMEPKPESERDAHKADTAISEALGISRGHYQRLKRIDN  105
               +   ++ PK    RD        ++A+G  R    +++R+ +
Sbjct  91   KTAAESAAVLPKQPETRDIA------AQAVGYGRDTISKVRRVKD  129


>gi|333998793|ref|YP_004531405.1| transcriptional repressor protein KorB [Treponema primitia ZAS-2]
 gi|333740982|gb|AEF86472.1| transcriptional repressor protein KorB [Treponema primitia ZAS-2]
Length=130

 Score = 35.8 bits (81),  Expect = 2.0, Method: Compositional matrix adjust.
 Identities = 19/48 (40%), Positives = 25/48 (53%), Gaps = 0/48 (0%)

Query  3    VCHTIADVVDRAKAERSENTLRKDFTPSELLAAGRRIAELERPKAKQR  50
            V   I D + + + E  EN  R+DFTP E+  A  RI  L  PK  +R
Sbjct  66   VVMDINDKLSKLEYEVEENLQRRDFTPDEIALASERINRLRNPKFFRR  113


>gi|326330162|ref|ZP_08196473.1| LigA [Nocardioidaceae bacterium Broad-1]
 gi|325951975|gb|EGD44004.1| LigA [Nocardioidaceae bacterium Broad-1]
Length=318

 Score = 35.4 bits (80),  Expect = 3.0, Method: Compositional matrix adjust.
 Identities = 34/107 (32%), Positives = 51/107 (48%), Gaps = 11/107 (10%)

Query  1    VHVCHTIADVVDRAKAERSENTLRKDFTPSELLAAGRRIAELERPKAKQRQ---REGGDH  57
            V V   I+D ++R  A + EN L K F+P+E     R + ++ +  A +RQ   R G D 
Sbjct  73   VWVRSGISDGLNRLLALQDENLLHKPFSPTEAADLYRELRQVMKEDADRRQAATRFGSDA  132

Query  58   GRQARYSGLGSMEPK-PESERDAHKADTAISEALGISRGHYQRLKRI  103
              Q  + G+ S  P  P   R   +A TA++         +QRL RI
Sbjct  133  ELQGSHGGVDSTPPSAPGKTR--SQAATAVT-----GMDSHQRLDRI  172


>gi|75812858|ref|YP_320475.1| hypothetical protein Ava_C0201 [Anabaena variabilis ATCC 29413]
 gi|75705614|gb|ABA25286.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413]
Length=394

 Score = 35.0 bits (79),  Expect = 3.9, Method: Composition-based stats.
 Identities = 21/61 (35%), Positives = 33/61 (55%), Gaps = 1/61 (1%)

Query  44   RPKAKQRQREGGDHGRQARYSGLGSMEPKPESERDAHK-ADTAISEALGISRGHYQRLKR  102
            RP+AK+RQRE      + +YS L +   +  S+ +  K     +SE L IS G Y + K+
Sbjct  123  RPQAKERQRESARRLNETKYSNLNTSIDESNSQLNKGKPVIQEVSENLRISVGSYHKGKK  182

Query  103  I  103
            +
Sbjct  183  V  183


>gi|343097525|emb|CCC85734.1| putative plasmid-partitioning protein [Paenibacillus polymyxa 
M1]
Length=373

 Score = 35.0 bits (79),  Expect = 4.1, Method: Compositional matrix adjust.
 Identities = 20/47 (43%), Positives = 28/47 (60%), Gaps = 0/47 (0%)

Query  4    CHTIADVVDRAKAERSENTLRKDFTPSELLAAGRRIAELERPKAKQR  50
               I D   + + E SEN  RK+FT SE +   RR+ E+ER KA++R
Sbjct  67   VMEIKDFEHQLQLEISENEHRKEFTFSERVEWARRLEEVERLKARER  113


>gi|17158796|ref|NP_478307.1| hypothetical protein all7660 [Nostoc sp. PCC 7120]
 gi|17134745|dbj|BAB77303.1| all7660 [Nostoc sp. PCC 7120]
Length=394

 Score = 34.7 bits (78),  Expect = 4.2, Method: Composition-based stats.
 Identities = 20/61 (33%), Positives = 33/61 (55%), Gaps = 1/61 (1%)

Query  44   RPKAKQRQREGGDHGRQARYSGLGSMEPKPESE-RDAHKADTAISEALGISRGHYQRLKR  102
            RP+AK+RQRE      +++YS L +   +  S+ +        +SE L IS G Y + K+
Sbjct  123  RPQAKERQRESARRLNESKYSNLNTSIDESNSQLKKGKPVIREVSENLRISVGSYHKGKK  182

Query  103  I  103
            +
Sbjct  183  V  183


>gi|172039701|ref|YP_001799415.1| putative resolvase [Corynebacterium urealyticum DSM 7109]
 gi|171851005|emb|CAQ03981.1| putative resolvase [Corynebacterium urealyticum DSM 7109]
Length=179

 Score = 34.3 bits (77),  Expect = 6.2, Method: Compositional matrix adjust.
 Identities = 29/71 (41%), Positives = 39/71 (55%), Gaps = 10/71 (14%)

Query  32   LLAAGRRIAELERPKAKQRQREG-------GDH-GRQARYSGLGSMEPKPESERDAHKAD  83
            LL+    +AE ER    +RQREG       G + GR+A  SG  + E K  + R A K+ 
Sbjct  104  LLSMLGAVAEFERSMILERQREGIAIAKAKGKYKGRKAALSGEQATELK--AMRQAGKSV  161

Query  84   TAISEALGISR  94
            TAI++  GISR
Sbjct  162  TAIAKHFGISR  172



Lambda     K      H
   0.313    0.130    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 127525862838


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40