BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2650c
Length=479
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609787|ref|NP_217166.1| phiRv2 prophage protein [Mycobacter... 970 0.0
gi|15842190|ref|NP_337227.1| hypothetical protein MT2727 [Mycoba... 968 0.0
gi|289444191|ref|ZP_06433935.1| phi phage protein [Mycobacterium... 966 0.0
gi|289753663|ref|ZP_06513041.1| phiRV1 phage protein [Mycobacter... 813 0.0
gi|289443029|ref|ZP_06432773.1| phi phage protein [Mycobacterium... 813 0.0
gi|15608714|ref|NP_216092.1| phiRV1 phage protein [Mycobacterium... 812 0.0
gi|289447185|ref|ZP_06436929.1| phiRv1 phage protein [Mycobacter... 812 0.0
gi|31792762|ref|NP_855255.1| phiRV1 phage protein [Mycobacterium... 774 0.0
gi|289758778|ref|ZP_06518156.1| phiRv2 prophage protein [Mycobac... 771 0.0
gi|308405926|ref|ZP_07494458.2| phage capsid family protein [Myc... 718 0.0
gi|306805298|ref|ZP_07441966.1| phage capsid family protein [Myc... 641 0.0
gi|307084155|ref|ZP_07493268.1| phage capsid family protein [Myc... 641 0.0
gi|308372556|ref|ZP_07429056.2| phage capsid family protein [Myc... 635 3e-180
gi|289448305|ref|ZP_06438049.1| LOW QUALITY PROTEIN: phiRv2 phag... 617 1e-174
gi|167966951|ref|ZP_02549228.1| putative phiRv1 phage protein [M... 608 6e-172
gi|240172573|ref|ZP_04751232.1| phiRv2 prophage protein [Mycobac... 473 2e-131
gi|289570824|ref|ZP_06451051.1| conserved hypothetical protein [... 440 2e-121
gi|289569612|ref|ZP_06449839.1| hypothetical protein TBJG_04301 ... 416 5e-114
gi|289751273|ref|ZP_06510651.1| phiRv2 phage protein [Mycobacter... 403 3e-110
gi|226307463|ref|YP_002767423.1| hypothetical protein RER_39760 ... 345 1e-92
gi|307085346|ref|ZP_07494459.1| hypothetical protein TMLG_04087 ... 315 1e-83
gi|307084156|ref|ZP_07493269.1| hypothetical protein TMLG_00562 ... 285 2e-74
gi|289751274|ref|ZP_06510652.1| phiRv1 phage protein [Mycobacter... 266 6e-69
gi|306804415|ref|ZP_07441083.1| hypothetical protein TMHG_01848 ... 260 3e-67
gi|290959236|ref|YP_003490418.1| phage capsid protein [Streptomy... 258 2e-66
gi|15843075|ref|NP_338112.1| hypothetical protein MT3573.12 [Myc... 252 1e-64
gi|206599551|ref|YP_002241990.1| gp7 [Mycobacterium phage Brujit... 239 8e-61
gi|15843074|ref|NP_338111.1| hypothetical protein MT3573.11 [Myc... 236 5e-60
gi|29566114|ref|NP_817683.1| gp6 [Mycobacterium phage Che9c] >gi... 231 2e-58
gi|120405315|ref|YP_955144.1| phage major capsid protein, HK97 [... 228 2e-57
gi|317125799|ref|YP_004099911.1| hypothetical protein Intca_2682... 184 3e-44
gi|306805297|ref|ZP_07441965.1| hypothetical protein TMHG_04002 ... 103 6e-20
gi|146277402|ref|YP_001167561.1| HK97 family phage major capsid ... 101 4e-19
gi|110634245|ref|YP_674453.1| HK97 family phage major capsid pro... 99.8 9e-19
gi|296444757|ref|ZP_06886720.1| phage major capsid protein, HK97... 99.4 1e-18
gi|15843072|ref|NP_338109.1| hypothetical protein MT3573.9 [Myco... 98.6 2e-18
gi|227875043|ref|ZP_03993188.1| HK97 family phage major capsid p... 95.1 2e-17
gi|306817330|ref|ZP_07451075.1| HK97 family phage major capsid p... 95.1 3e-17
gi|150391720|ref|YP_001321769.1| HK97 family phage major capsid ... 94.7 3e-17
gi|153955258|ref|YP_001396023.1| Phage major capsid protein [Clo... 93.6 6e-17
gi|167039899|ref|YP_001662884.1| HK97 family phage major capsid ... 93.6 6e-17
gi|42779481|ref|NP_976728.1| HK97 family phage major capsid prot... 93.6 7e-17
gi|340355630|ref|ZP_08678308.1| HK97 family prophage LambdaSa04 ... 93.6 7e-17
gi|125974135|ref|YP_001038045.1| HK97 family phage major capsid ... 92.0 2e-16
gi|220930199|ref|YP_002507108.1| phage major capsid protein, HK9... 91.7 2e-16
gi|304390287|ref|ZP_07372240.1| HK97 family phage major capsid p... 91.7 3e-16
gi|281418278|ref|ZP_06249298.1| phage major capsid protein, HK97... 91.3 4e-16
gi|192292346|ref|YP_001992951.1| phage major capsid protein, HK9... 90.9 5e-16
gi|256003557|ref|ZP_05428547.1| phage major capsid protein, HK97... 90.5 6e-16
gi|268610678|ref|ZP_06144405.1| HK97 family phage major capsid p... 90.1 7e-16
>gi|15609787|ref|NP_217166.1| phiRv2 prophage protein [Mycobacterium tuberculosis H37Rv]
gi|148662492|ref|YP_001284015.1| putative phiRv2 prophage protein [Mycobacterium tuberculosis
H37Ra]
gi|167967166|ref|ZP_02549443.1| putative phiRv2 prophage protein [Mycobacterium tuberculosis
H37Ra]
gi|1550691|emb|CAB02329.1| POSSIBLE phiRv2 PROPHAGE PROTEIN [Mycobacterium tuberculosis
H37Rv]
gi|148506644|gb|ABQ74453.1| putative phiRv2 prophage protein [Mycobacterium tuberculosis
H37Ra]
Length=479
Score = 970 bits (2508), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/479 (100%), Positives = 479/479 (100%), Gaps = 0/479 (0%)
Query 1 MTNEQHFADDGDIKQLSLDETRSAAKQLLDSVEGDLTGDVAQRFQALTRHAEELRAEQRR 60
MTNEQHFADDGDIKQLSLDETRSAAKQLLDSVEGDLTGDVAQRFQALTRHAEELRAEQRR
Sbjct 1 MTNEQHFADDGDIKQLSLDETRSAAKQLLDSVEGDLTGDVAQRFQALTRHAEELRAEQRR 60
Query 61 RGREAEEALRRCRAGELRVVPGAPTGGDDGDAPPGNSLRDIAFRTLDVCVRDGLMSSRAA 120
RGREAEEALRRCRAGELRVVPGAPTGGDDGDAPPGNSLRDIAFRTLDVCVRDGLMSSRAA
Sbjct 61 RGREAEEALRRCRAGELRVVPGAPTGGDDGDAPPGNSLRDIAFRTLDVCVRDGLMSSRAA 120
Query 121 EAAETLCRTGPPQSTSWAQRWLAATGNRDYLGAFVKRVSNPVAGHTTWTDREAAAWREAA 180
EAAETLCRTGPPQSTSWAQRWLAATGNRDYLGAFVKRVSNPVAGHTTWTDREAAAWREAA
Sbjct 121 EAAETLCRTGPPQSTSWAQRWLAATGNRDYLGAFVKRVSNPVAGHTTWTDREAAAWREAA 180
Query 181 AVAAEQRAMGLVDTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEVWRGVTSEG 240
AVAAEQRAMGLVDTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEVWRGVTSEG
Sbjct 181 AVAAEQRAMGLVDTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEVWRGVTSEG 240
Query 241 AEAHWYSEAQEVSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAAGFVAEVGRVLADSVEQ 300
AEAHWYSEAQEVSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAAGFVAEVGRVLADSVEQ
Sbjct 241 AEAHWYSEAQEVSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAAGFVAEVGRVLADSVEQ 300
Query 301 LQAAAFVSGSGNGEPTGFVSALTGTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAF 360
LQAAAFVSGSGNGEPTGFVSALTGTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAF
Sbjct 301 LQAAAFVSGSGNGEPTGFVSALTGTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAF 360
Query 361 AANLSTINVLRQAETANGALKFPSLHASPPMLAGKHIWEVSNMDTVDAAVTATNYPLVLG 420
AANLSTINVLRQAETANGALKFPSLHASPPMLAGKHIWEVSNMDTVDAAVTATNYPLVLG
Sbjct 361 AANLSTINVLRQAETANGALKFPSLHASPPMLAGKHIWEVSNMDTVDAAVTATNYPLVLG 420
Query 421 DWKQFIITDRVGSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKVQTTA 479
DWKQFIITDRVGSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKVQTTA
Sbjct 421 DWKQFIITDRVGSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKVQTTA 479
>gi|15842190|ref|NP_337227.1| hypothetical protein MT2727 [Mycobacterium tuberculosis CDC1551]
gi|148823841|ref|YP_001288595.1| phiRv2 prophage protein [Mycobacterium tuberculosis F11]
gi|253798268|ref|YP_003031269.1| phiRv2 phage protein [Mycobacterium tuberculosis KZN 1435]
36 more sequence titles
Length=479
Score = 968 bits (2502), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/479 (99%), Positives = 478/479 (99%), Gaps = 0/479 (0%)
Query 1 MTNEQHFADDGDIKQLSLDETRSAAKQLLDSVEGDLTGDVAQRFQALTRHAEELRAEQRR 60
MTNEQHFADDGDIKQLSLDETRSAAKQLLDSVEGDLTGDVAQRFQALTRHAEELRAEQRR
Sbjct 1 MTNEQHFADDGDIKQLSLDETRSAAKQLLDSVEGDLTGDVAQRFQALTRHAEELRAEQRR 60
Query 61 RGREAEEALRRCRAGELRVVPGAPTGGDDGDAPPGNSLRDIAFRTLDVCVRDGLMSSRAA 120
RGREAEEALRRCRAGELRVVPGAPTGGDDGDAPPGNSLRD AFRTLDVCVRDGLMSSRAA
Sbjct 61 RGREAEEALRRCRAGELRVVPGAPTGGDDGDAPPGNSLRDTAFRTLDVCVRDGLMSSRAA 120
Query 121 EAAETLCRTGPPQSTSWAQRWLAATGNRDYLGAFVKRVSNPVAGHTTWTDREAAAWREAA 180
EAAETLCRTGPPQSTSWAQRWLAATGNRDYLGAFVKRVSNPVAGHTTWTDREAAAWREAA
Sbjct 121 EAAETLCRTGPPQSTSWAQRWLAATGNRDYLGAFVKRVSNPVAGHTTWTDREAAAWREAA 180
Query 181 AVAAEQRAMGLVDTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEVWRGVTSEG 240
AVAAEQRAMGLVDTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEVWRGVTSEG
Sbjct 181 AVAAEQRAMGLVDTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEVWRGVTSEG 240
Query 241 AEAHWYSEAQEVSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAAGFVAEVGRVLADSVEQ 300
AEAHWYSEAQEVSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAAGFVAEVGRVLADSVEQ
Sbjct 241 AEAHWYSEAQEVSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAAGFVAEVGRVLADSVEQ 300
Query 301 LQAAAFVSGSGNGEPTGFVSALTGTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAF 360
LQAAAFVSGSGNGEPTGFVSALTGTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAF
Sbjct 301 LQAAAFVSGSGNGEPTGFVSALTGTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAF 360
Query 361 AANLSTINVLRQAETANGALKFPSLHASPPMLAGKHIWEVSNMDTVDAAVTATNYPLVLG 420
AANLSTINVLRQAETANGALKFPSLHASPPMLAGKHIWEVSNMDTVDAAVTATNYPLVLG
Sbjct 361 AANLSTINVLRQAETANGALKFPSLHASPPMLAGKHIWEVSNMDTVDAAVTATNYPLVLG 420
Query 421 DWKQFIITDRVGSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKVQTTA 479
DWKQFIITDRVGSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKVQTTA
Sbjct 421 DWKQFIITDRVGSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKVQTTA 479
>gi|289444191|ref|ZP_06433935.1| phi phage protein [Mycobacterium tuberculosis T46]
gi|289746451|ref|ZP_06505829.1| phiRv2 prophage protein [Mycobacterium tuberculosis 02_1987]
gi|294994255|ref|ZP_06799946.1| phiRv2 phage protein [Mycobacterium tuberculosis 210]
7 more sequence titles
Length=479
Score = 966 bits (2496), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/479 (99%), Positives = 477/479 (99%), Gaps = 0/479 (0%)
Query 1 MTNEQHFADDGDIKQLSLDETRSAAKQLLDSVEGDLTGDVAQRFQALTRHAEELRAEQRR 60
MT EQHFADDGDIKQLSLDETRSAAKQLLDSVEGDLTGDVAQRFQALTRHAEELRAEQRR
Sbjct 1 MTTEQHFADDGDIKQLSLDETRSAAKQLLDSVEGDLTGDVAQRFQALTRHAEELRAEQRR 60
Query 61 RGREAEEALRRCRAGELRVVPGAPTGGDDGDAPPGNSLRDIAFRTLDVCVRDGLMSSRAA 120
RGREAEEALRRCRAGELRVVPGAPTGGDDGDAPPGNSLRD AFRTLDVCVRDGLMSSRAA
Sbjct 61 RGREAEEALRRCRAGELRVVPGAPTGGDDGDAPPGNSLRDTAFRTLDVCVRDGLMSSRAA 120
Query 121 EAAETLCRTGPPQSTSWAQRWLAATGNRDYLGAFVKRVSNPVAGHTTWTDREAAAWREAA 180
EAAETLCRTGPPQSTSWAQRWLAATGNRDYLGAFVKRVSNPVAGHTTWTDREAAAWREAA
Sbjct 121 EAAETLCRTGPPQSTSWAQRWLAATGNRDYLGAFVKRVSNPVAGHTTWTDREAAAWREAA 180
Query 181 AVAAEQRAMGLVDTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEVWRGVTSEG 240
AVAAEQRAMGLVDTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEVWRGVTSEG
Sbjct 181 AVAAEQRAMGLVDTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEVWRGVTSEG 240
Query 241 AEAHWYSEAQEVSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAAGFVAEVGRVLADSVEQ 300
AEAHWYSEAQEVSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAAGFVAEVGRVLADSVEQ
Sbjct 241 AEAHWYSEAQEVSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAAGFVAEVGRVLADSVEQ 300
Query 301 LQAAAFVSGSGNGEPTGFVSALTGTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAF 360
LQAAAFVSGSGNGEPTGFVSALTGTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAF
Sbjct 301 LQAAAFVSGSGNGEPTGFVSALTGTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAF 360
Query 361 AANLSTINVLRQAETANGALKFPSLHASPPMLAGKHIWEVSNMDTVDAAVTATNYPLVLG 420
AANLSTINVLRQAETANGALKFPSLHASPPMLAGKHIWEVSNMDTVDAAVTATNYPLVLG
Sbjct 361 AANLSTINVLRQAETANGALKFPSLHASPPMLAGKHIWEVSNMDTVDAAVTATNYPLVLG 420
Query 421 DWKQFIITDRVGSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKVQTTA 479
DWKQFIITDRVGSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKVQTTA
Sbjct 421 DWKQFIITDRVGSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKVQTTA 479
>gi|289753663|ref|ZP_06513041.1| phiRV1 phage protein [Mycobacterium tuberculosis EAS054]
gi|289694250|gb|EFD61679.1| phiRV1 phage protein [Mycobacterium tuberculosis EAS054]
Length=479
Score = 813 bits (2101), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/468 (90%), Positives = 441/468 (95%), Gaps = 0/468 (0%)
Query 12 DIKQLSLDETRSAAKQLLDSVEGDLTGDVAQRFQALTRHAEELRAEQRRRGREAEEALRR 71
DIK LSL ETR AAKQLLDSV GDLTG+ AQRFQALTRHAEELRAEQRRRGREAEEALRR
Sbjct 12 DIKNLSLPETRDAAKQLLDSVAGDLTGEAAQRFQALTRHAEELRAEQRRRGREAEEALRR 71
Query 72 CRAGELRVVPGAPTGGDDGDAPPGNSLRDIAFRTLDVCVRDGLMSSRAAEAAETLCRTGP 131
RAGELRVVPGAPTGGDDGDAPPGNSLRD AFRTLD CVRDGLMSSRAAE AETLCRTGP
Sbjct 72 YRAGELRVVPGAPTGGDDGDAPPGNSLRDTAFRTLDSCVRDGLMSSRAAETAETLCRTGP 131
Query 132 PQSTSWAQRWLAATGNRDYLGAFVKRVSNPVAGHTTWTDREAAAWREAAAVAAEQRAMGL 191
PQSTSWAQRWLAATG+RDYLGAFVKRVSNPVAGHT WTDREAAAWREAAAVAAEQRAMGL
Sbjct 132 PQSTSWAQRWLAATGSRDYLGAFVKRVSNPVAGHTVWTDREAAAWREAAAVAAEQRAMGL 191
Query 192 VDTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEVWRGVTSEGAEAHWYSEAQE 251
VDT GGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSE+WRGVTSEGAEA WYSEAQE
Sbjct 192 VDTQGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEIWRGVTSEGAEARWYSEAQE 251
Query 252 VSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAAGFVAEVGRVLADSVEQLQAAAFVSGSG 311
VSDDSP LAQPAVP+YRGSCWIPFS+E+EGDAA FV E+G++LADSVEQLQAAAFV+GSG
Sbjct 252 VSDDSPALAQPAVPNYRGSCWIPFSIELEGDAASFVGEIGKILADSVEQLQAAAFVNGSG 311
Query 312 NGEPTGFVSALTGTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAFAANLSTINVLR 371
NGEPTGFVSALTGT+D V GAG+EA+VAADVYALQSALPPRFQ+++AFAANLSTIN LR
Sbjct 312 NGEPTGFVSALTGTSDQVVVGAGSEAIVAADVYALQSALPPRFQASAAFAANLSTINTLR 371
Query 372 QAETANGALKFPSLHASPPMLAGKHIWEVSNMDTVDAAVTATNYPLVLGDWKQFIITDRV 431
QAET+NGALKFPSLH SPPMLAGK + EVS+MDTVD+AVTATN+PLVLGDWKQF+I DRV
Sbjct 372 QAETSNGALKFPSLHDSPPMLAGKSVLEVSHMDTVDSAVTATNHPLVLGDWKQFLIVDRV 431
Query 432 GSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKVQTTA 479
GS VELVPH+FG NRRPTGQRGFF WFRVGSDVLV NAFRVLKV+TTA
Sbjct 432 GSMVELVPHLFGPNRRPTGQRGFFAWFRVGSDVLVRNAFRVLKVETTA 479
>gi|289443029|ref|ZP_06432773.1| phi phage protein [Mycobacterium tuberculosis T46]
gi|289415948|gb|EFD13188.1| phi phage protein [Mycobacterium tuberculosis T46]
Length=473
Score = 813 bits (2100), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/468 (90%), Positives = 441/468 (95%), Gaps = 0/468 (0%)
Query 12 DIKQLSLDETRSAAKQLLDSVEGDLTGDVAQRFQALTRHAEELRAEQRRRGREAEEALRR 71
DIK LSL ETR AAKQLLDSV GDLTG+ AQRFQALTRHAEELRAEQRRRGREAEEALRR
Sbjct 6 DIKNLSLPETRDAAKQLLDSVAGDLTGEAAQRFQALTRHAEELRAEQRRRGREAEEALRR 65
Query 72 CRAGELRVVPGAPTGGDDGDAPPGNSLRDIAFRTLDVCVRDGLMSSRAAEAAETLCRTGP 131
RAGELRVVPGAPTGGDDGDAPPGNSLRD AFRTLD CVRDGLMSSRAAE AETLCRTGP
Sbjct 66 YRAGELRVVPGAPTGGDDGDAPPGNSLRDTAFRTLDSCVRDGLMSSRAAETAETLCRTGP 125
Query 132 PQSTSWAQRWLAATGNRDYLGAFVKRVSNPVAGHTTWTDREAAAWREAAAVAAEQRAMGL 191
PQSTSWAQRWLAATG+RDYLGAFVKRVSNPVAGHT WTDREAAAWREAAAVAAEQRAMGL
Sbjct 126 PQSTSWAQRWLAATGSRDYLGAFVKRVSNPVAGHTVWTDREAAAWREAAAVAAEQRAMGL 185
Query 192 VDTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEVWRGVTSEGAEAHWYSEAQE 251
VDT GGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSE+WRGVTSEGAEA WYSEAQE
Sbjct 186 VDTQGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEIWRGVTSEGAEARWYSEAQE 245
Query 252 VSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAAGFVAEVGRVLADSVEQLQAAAFVSGSG 311
VSDDSP LAQPAVP+YRGSCWIPFS+E+EGDAA FV E+G++LADSVEQLQAAAFV+GSG
Sbjct 246 VSDDSPALAQPAVPNYRGSCWIPFSIELEGDAASFVGEIGKILADSVEQLQAAAFVNGSG 305
Query 312 NGEPTGFVSALTGTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAFAANLSTINVLR 371
NGEPTGFVSALTGT+D V GAG+EA+VAADVYALQSALPPRFQ+++AFAANLSTIN LR
Sbjct 306 NGEPTGFVSALTGTSDQVVVGAGSEAIVAADVYALQSALPPRFQASAAFAANLSTINTLR 365
Query 372 QAETANGALKFPSLHASPPMLAGKHIWEVSNMDTVDAAVTATNYPLVLGDWKQFIITDRV 431
QAET+NGALKFPSLH SPPMLAGK + EVS+MDTVD+AVTATN+PLVLGDWKQF+I DRV
Sbjct 366 QAETSNGALKFPSLHDSPPMLAGKSVLEVSHMDTVDSAVTATNHPLVLGDWKQFLIVDRV 425
Query 432 GSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKVQTTA 479
GS VELVPH+FG NRRPTGQRGFF WFRVGSDVLV NAFRVLKV+TTA
Sbjct 426 GSMVELVPHLFGPNRRPTGQRGFFAWFRVGSDVLVRNAFRVLKVETTA 473
>gi|15608714|ref|NP_216092.1| phiRV1 phage protein [Mycobacterium tuberculosis H37Rv]
gi|148661371|ref|YP_001282894.1| putative phiRv1 phage protein [Mycobacterium tuberculosis H37Ra]
gi|254366078|ref|ZP_04982123.1| possible phiRV1 phage protein [Mycobacterium tuberculosis str.
Haarlem]
22 more sequence titles
Length=473
Score = 812 bits (2097), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/468 (90%), Positives = 441/468 (95%), Gaps = 0/468 (0%)
Query 12 DIKQLSLDETRSAAKQLLDSVEGDLTGDVAQRFQALTRHAEELRAEQRRRGREAEEALRR 71
DIK LSL ETR AAKQLLDSV GDLTG+ AQRFQALTRHAEELRAEQRRRGREAEEALRR
Sbjct 6 DIKNLSLPETRDAAKQLLDSVAGDLTGEAAQRFQALTRHAEELRAEQRRRGREAEEALRR 65
Query 72 CRAGELRVVPGAPTGGDDGDAPPGNSLRDIAFRTLDVCVRDGLMSSRAAEAAETLCRTGP 131
RAGELRVVPGAPTGGDDGDAPPGNSLRD AFRTLD CVRDGLMSSRAAE AETLCRTGP
Sbjct 66 YRAGELRVVPGAPTGGDDGDAPPGNSLRDTAFRTLDSCVRDGLMSSRAAETAETLCRTGP 125
Query 132 PQSTSWAQRWLAATGNRDYLGAFVKRVSNPVAGHTTWTDREAAAWREAAAVAAEQRAMGL 191
PQSTSWAQRWLAATG+RDYLGAFVKRVSNPVAGHT WTDREAAAWREAAAVAAEQRAMGL
Sbjct 126 PQSTSWAQRWLAATGSRDYLGAFVKRVSNPVAGHTVWTDREAAAWREAAAVAAEQRAMGL 185
Query 192 VDTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEVWRGVTSEGAEAHWYSEAQE 251
VDT GGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSE+WRGVTSEGAEA WYSEAQE
Sbjct 186 VDTQGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEIWRGVTSEGAEARWYSEAQE 245
Query 252 VSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAAGFVAEVGRVLADSVEQLQAAAFVSGSG 311
VSDDSP LAQPAVP+YRGSCWIPFS+E+EGDAA FV E+G++LADSVEQLQAAAFV+GSG
Sbjct 246 VSDDSPALAQPAVPNYRGSCWIPFSIELEGDAASFVGEIGKILADSVEQLQAAAFVNGSG 305
Query 312 NGEPTGFVSALTGTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAFAANLSTINVLR 371
NGEPTGFVSALTGT+D V GAG+EA+VAADVYALQSALPPRFQ+++AFAANLSTIN LR
Sbjct 306 NGEPTGFVSALTGTSDQVVVGAGSEAIVAADVYALQSALPPRFQASAAFAANLSTINTLR 365
Query 372 QAETANGALKFPSLHASPPMLAGKHIWEVSNMDTVDAAVTATNYPLVLGDWKQFIITDRV 431
QAET+NGALKFPSLH SPPMLAGK + EVS+MDTVD+AVTATN+PLVLGDWKQF+I DRV
Sbjct 366 QAETSNGALKFPSLHDSPPMLAGKSVLEVSHMDTVDSAVTATNHPLVLGDWKQFLIGDRV 425
Query 432 GSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKVQTTA 479
GS VELVPH+FG NRRPTGQRGFF WFRVGSDVLV NAFRVLKV+TTA
Sbjct 426 GSMVELVPHLFGPNRRPTGQRGFFAWFRVGSDVLVRNAFRVLKVETTA 473
>gi|289447185|ref|ZP_06436929.1| phiRv1 phage protein [Mycobacterium tuberculosis CPHL_A]
gi|289420143|gb|EFD17344.1| phiRv1 phage protein [Mycobacterium tuberculosis CPHL_A]
Length=473
Score = 812 bits (2097), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/468 (89%), Positives = 440/468 (95%), Gaps = 0/468 (0%)
Query 12 DIKQLSLDETRSAAKQLLDSVEGDLTGDVAQRFQALTRHAEELRAEQRRRGREAEEALRR 71
DIK LSL ETR AAKQLLDSV GDLTG+ AQRFQALTRHAEELRAEQRRRGREAEEALRR
Sbjct 6 DIKNLSLPETRDAAKQLLDSVAGDLTGEAAQRFQALTRHAEELRAEQRRRGREAEEALRR 65
Query 72 CRAGELRVVPGAPTGGDDGDAPPGNSLRDIAFRTLDVCVRDGLMSSRAAEAAETLCRTGP 131
RAGELRVVPGAPTGGDDGDAPPGNSLRD AFRTLD CVRDGLMSSRAAE AETLCRTGP
Sbjct 66 YRAGELRVVPGAPTGGDDGDAPPGNSLRDTAFRTLDSCVRDGLMSSRAAETAETLCRTGP 125
Query 132 PQSTSWAQRWLAATGNRDYLGAFVKRVSNPVAGHTTWTDREAAAWREAAAVAAEQRAMGL 191
PQSTSWAQRWLAATG+RDYLGAFVKRVSNPVAGHT WTDREAAAWREAAAVAAEQRAMGL
Sbjct 126 PQSTSWAQRWLAATGSRDYLGAFVKRVSNPVAGHTVWTDREAAAWREAAAVAAEQRAMGL 185
Query 192 VDTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEVWRGVTSEGAEAHWYSEAQE 251
VDT GGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSE+WRGVTSEGAEA WYSEAQE
Sbjct 186 VDTQGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEIWRGVTSEGAEARWYSEAQE 245
Query 252 VSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAAGFVAEVGRVLADSVEQLQAAAFVSGSG 311
VSDDSP LAQPAVP+YRGSCWIPFS+E+EGDAA FV E+G++LADSVEQLQAA FV+GSG
Sbjct 246 VSDDSPALAQPAVPNYRGSCWIPFSIELEGDAASFVGEIGKILADSVEQLQAAVFVNGSG 305
Query 312 NGEPTGFVSALTGTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAFAANLSTINVLR 371
NGEPTGFVSALTGT+D V GAG+EA+VAADVYALQSALPPRFQ+++AFAANLSTIN LR
Sbjct 306 NGEPTGFVSALTGTSDQVVVGAGSEAIVAADVYALQSALPPRFQASAAFAANLSTINTLR 365
Query 372 QAETANGALKFPSLHASPPMLAGKHIWEVSNMDTVDAAVTATNYPLVLGDWKQFIITDRV 431
QAET+NGALKFPSLH SPPMLAGK + EVS+MDTVD+AVTATN+PLVLGDWKQF+I DRV
Sbjct 366 QAETSNGALKFPSLHDSPPMLAGKSVLEVSHMDTVDSAVTATNHPLVLGDWKQFLIVDRV 425
Query 432 GSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKVQTTA 479
GS VELVPH+FG NRRPTGQRGFF WFRVGSDVLV NAFRVLKV+TTA
Sbjct 426 GSMVELVPHLFGPNRRPTGQRGFFAWFRVGSDVLVRNAFRVLKVETTA 473
>gi|31792762|ref|NP_855255.1| phiRV1 phage protein [Mycobacterium bovis AF2122/97]
gi|31618352|emb|CAD96270.1| Probable phiRV1 phage protein [Mycobacterium bovis AF2122/97]
Length=473
Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/468 (89%), Positives = 439/468 (94%), Gaps = 0/468 (0%)
Query 12 DIKQLSLDETRSAAKQLLDSVEGDLTGDVAQRFQALTRHAEELRAEQRRRGREAEEALRR 71
DIK LSL ETR AAKQLLDSV GDLTG+ AQRFQALTRHAEELRAEQRRRGREAEE LRR
Sbjct 6 DIKNLSLPETRDAAKQLLDSVAGDLTGEAAQRFQALTRHAEELRAEQRRRGREAEEELRR 65
Query 72 CRAGELRVVPGAPTGGDDGDAPPGNSLRDIAFRTLDVCVRDGLMSSRAAEAAETLCRTGP 131
RAGELRVVPGAPTGGDDGDAPPGNSLRD AFRTLD CVRDGLMSSRAAE AETLCRTGP
Sbjct 66 YRAGELRVVPGAPTGGDDGDAPPGNSLRDTAFRTLDSCVRDGLMSSRAAETAETLCRTGP 125
Query 132 PQSTSWAQRWLAATGNRDYLGAFVKRVSNPVAGHTTWTDREAAAWREAAAVAAEQRAMGL 191
PQSTSWAQRWLAATG+RDYLGAFVKRVSNPVAGHT WTDREAAAWREAAAVAAEQRAMGL
Sbjct 126 PQSTSWAQRWLAATGSRDYLGAFVKRVSNPVAGHTVWTDREAAAWREAAAVAAEQRAMGL 185
Query 192 VDTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEVWRGVTSEGAEAHWYSEAQE 251
VDT GGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSE+WRGVTSEGAEA WYSEAQE
Sbjct 186 VDTQGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEIWRGVTSEGAEARWYSEAQE 245
Query 252 VSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAAGFVAEVGRVLADSVEQLQAAAFVSGSG 311
VSDDSP LAQPAVP+YRGSCWIPFS+E+EGDAA FV E+G++LADSVEQLQ AAFV+GSG
Sbjct 246 VSDDSPALAQPAVPNYRGSCWIPFSIELEGDAASFVGEIGKILADSVEQLQTAAFVNGSG 305
Query 312 NGEPTGFVSALTGTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAFAANLSTINVLR 371
NGEPTGFVSALTGT+D V GAG+EA+VAADVYALQSALPPRFQ+++AFAANLSTIN LR
Sbjct 306 NGEPTGFVSALTGTSDQVVVGAGSEAIVAADVYALQSALPPRFQASAAFAANLSTINTLR 365
Query 372 QAETANGALKFPSLHASPPMLAGKHIWEVSNMDTVDAAVTATNYPLVLGDWKQFIITDRV 431
QAET+NGALKFPSLH SPPMLAGK + EVS+MDTVD+AVTATN+PLVLGDWKQF+I DRV
Sbjct 366 QAETSNGALKFPSLHDSPPMLAGKSVLEVSHMDTVDSAVTATNHPLVLGDWKQFLIVDRV 425
Query 432 GSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKVQTTA 479
GS VELVPH+FG NRRPTGQRGFF WFRVGSDVLV NAFRVLKV+TTA
Sbjct 426 GSMVELVPHLFGPNRRPTGQRGFFAWFRVGSDVLVRNAFRVLKVETTA 473
>gi|289758778|ref|ZP_06518156.1| phiRv2 prophage protein [Mycobacterium tuberculosis T85]
gi|289714342|gb|EFD78354.1| phiRv2 prophage protein [Mycobacterium tuberculosis T85]
Length=382
Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/382 (99%), Positives = 381/382 (99%), Gaps = 0/382 (0%)
Query 98 LRDIAFRTLDVCVRDGLMSSRAAEAAETLCRTGPPQSTSWAQRWLAATGNRDYLGAFVKR 157
+RD AFRTLDVCVRDGLMSSRAAEAAETLCRTGPPQSTSWAQRWLAATGNRDYLGAFVKR
Sbjct 1 MRDTAFRTLDVCVRDGLMSSRAAEAAETLCRTGPPQSTSWAQRWLAATGNRDYLGAFVKR 60
Query 158 VSNPVAGHTTWTDREAAAWREAAAVAAEQRAMGLVDTAGGFLIPAALDPAILLSGDGSTN 217
VSNPVAGHTTWTDREAAAWREAAAVAAEQRAMGLVDTAGGFLIPAALDPAILLSGDGSTN
Sbjct 61 VSNPVAGHTTWTDREAAAWREAAAVAAEQRAMGLVDTAGGFLIPAALDPAILLSGDGSTN 120
Query 218 PIRQVARVVQTTSEVWRGVTSEGAEAHWYSEAQEVSDDSPTLAQPAVPSYRGSCWIPFSL 277
PIRQVARVVQTTSEVWRGVTSEGAEAHWYSEAQEVSDDSPTLAQPAVPSYRGSCWIPFSL
Sbjct 121 PIRQVARVVQTTSEVWRGVTSEGAEAHWYSEAQEVSDDSPTLAQPAVPSYRGSCWIPFSL 180
Query 278 EIEGDAAGFVAEVGRVLADSVEQLQAAAFVSGSGNGEPTGFVSALTGTADYTVTGAGTEA 337
EIEGDAAGFVAEVGRVLADSVEQLQAAAFVSGSGNGEPTGFVSALTGTADYTVTGAGTEA
Sbjct 181 EIEGDAAGFVAEVGRVLADSVEQLQAAAFVSGSGNGEPTGFVSALTGTADYTVTGAGTEA 240
Query 338 VVAADVYALQSALPPRFQSNSAFAANLSTINVLRQAETANGALKFPSLHASPPMLAGKHI 397
VVAADVYALQSALPPRFQSNSAFAANLSTINVLRQAETANGALKFPSLHASPPMLAGKHI
Sbjct 241 VVAADVYALQSALPPRFQSNSAFAANLSTINVLRQAETANGALKFPSLHASPPMLAGKHI 300
Query 398 WEVSNMDTVDAAVTATNYPLVLGDWKQFIITDRVGSTVELVPHVFGGNRRPTGQRGFFCW 457
WEVSNMDTVDAAVTATNYPLVLGDWKQFIITDRVGSTVELVPHVFGGNRRPTGQRGFFCW
Sbjct 301 WEVSNMDTVDAAVTATNYPLVLGDWKQFIITDRVGSTVELVPHVFGGNRRPTGQRGFFCW 360
Query 458 FRVGSDVLVDNAFRVLKVQTTA 479
FRVGSDVLVDNAFRVLKVQTTA
Sbjct 361 FRVGSDVLVDNAFRVLKVQTTA 382
>gi|308405926|ref|ZP_07494458.2| phage capsid family protein [Mycobacterium tuberculosis SUMu012]
gi|308365115|gb|EFP53966.1| phage capsid family protein [Mycobacterium tuberculosis SUMu012]
Length=354
Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/354 (99%), Positives = 354/354 (100%), Gaps = 0/354 (0%)
Query 126 LCRTGPPQSTSWAQRWLAATGNRDYLGAFVKRVSNPVAGHTTWTDREAAAWREAAAVAAE 185
+CRTGPPQSTSWAQRWLAATGNRDYLGAFVKRVSNPVAGHTTWTDREAAAWREAAAVAAE
Sbjct 1 MCRTGPPQSTSWAQRWLAATGNRDYLGAFVKRVSNPVAGHTTWTDREAAAWREAAAVAAE 60
Query 186 QRAMGLVDTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEVWRGVTSEGAEAHW 245
QRAMGLVDTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEVWRGVTSEGAEAHW
Sbjct 61 QRAMGLVDTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEVWRGVTSEGAEAHW 120
Query 246 YSEAQEVSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAAGFVAEVGRVLADSVEQLQAAA 305
YSEAQEVSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAAGFVAEVGRVLADSVEQLQAAA
Sbjct 121 YSEAQEVSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAAGFVAEVGRVLADSVEQLQAAA 180
Query 306 FVSGSGNGEPTGFVSALTGTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAFAANLS 365
FVSGSGNGEPTGFVSALTGTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAFAANLS
Sbjct 181 FVSGSGNGEPTGFVSALTGTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAFAANLS 240
Query 366 TINVLRQAETANGALKFPSLHASPPMLAGKHIWEVSNMDTVDAAVTATNYPLVLGDWKQF 425
TINVLRQAETANGALKFPSLHASPPMLAGKHIWEVSNMDTVDAAVTATNYPLVLGDWKQF
Sbjct 241 TINVLRQAETANGALKFPSLHASPPMLAGKHIWEVSNMDTVDAAVTATNYPLVLGDWKQF 300
Query 426 IITDRVGSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKVQTTA 479
IITDRVGSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKVQTTA
Sbjct 301 IITDRVGSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKVQTTA 354
>gi|306805298|ref|ZP_07441966.1| phage capsid family protein [Mycobacterium tuberculosis SUMu008]
gi|308348142|gb|EFP36993.1| phage capsid family protein [Mycobacterium tuberculosis SUMu008]
Length=373
Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/373 (89%), Positives = 353/373 (95%), Gaps = 0/373 (0%)
Query 107 DVCVRDGLMSSRAAEAAETLCRTGPPQSTSWAQRWLAATGNRDYLGAFVKRVSNPVAGHT 166
D CVRDGLMSSRAAE AETLCRTGPPQSTSWAQRWLAATG+RDYLGAFVKRVSNPVAGHT
Sbjct 1 DSCVRDGLMSSRAAETAETLCRTGPPQSTSWAQRWLAATGSRDYLGAFVKRVSNPVAGHT 60
Query 167 TWTDREAAAWREAAAVAAEQRAMGLVDTAGGFLIPAALDPAILLSGDGSTNPIRQVARVV 226
WTDREAAAWREAAAVAAEQRAMGLVDT GGFLIPAALDPAILLSGDGSTNPIRQVARVV
Sbjct 61 VWTDREAAAWREAAAVAAEQRAMGLVDTQGGFLIPAALDPAILLSGDGSTNPIRQVARVV 120
Query 227 QTTSEVWRGVTSEGAEAHWYSEAQEVSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAAGF 286
QTTSE+WRGVTSEGAEA WYSEAQEVSDDSP LAQPAVP+YRGSCWIPFS+E+EGDAA F
Sbjct 121 QTTSEIWRGVTSEGAEARWYSEAQEVSDDSPALAQPAVPNYRGSCWIPFSIELEGDAASF 180
Query 287 VAEVGRVLADSVEQLQAAAFVSGSGNGEPTGFVSALTGTADYTVTGAGTEAVVAADVYAL 346
V E+G++LADSVEQLQAAAFV+GSGNGEPTGFVSALTGT+D V GAG+EA+VAADVYAL
Sbjct 181 VGEIGKILADSVEQLQAAAFVNGSGNGEPTGFVSALTGTSDQVVVGAGSEAIVAADVYAL 240
Query 347 QSALPPRFQSNSAFAANLSTINVLRQAETANGALKFPSLHASPPMLAGKHIWEVSNMDTV 406
QSALPPRFQ+++AFAANLSTIN LRQAET+NGALKFPSLH SPPMLAGK + EVS+MDTV
Sbjct 241 QSALPPRFQASAAFAANLSTINTLRQAETSNGALKFPSLHDSPPMLAGKSVLEVSHMDTV 300
Query 407 DAAVTATNYPLVLGDWKQFIITDRVGSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLV 466
D+AVTATN+PLVLGDWKQF+I DRVGS VELVPH+FG NRRPTGQRGFF WFRVGSDVLV
Sbjct 301 DSAVTATNHPLVLGDWKQFLIGDRVGSMVELVPHLFGPNRRPTGQRGFFAWFRVGSDVLV 360
Query 467 DNAFRVLKVQTTA 479
NAFRVLKV+TTA
Sbjct 361 RNAFRVLKVETTA 373
>gi|307084155|ref|ZP_07493268.1| phage capsid family protein [Mycobacterium tuberculosis SUMu012]
gi|308366219|gb|EFP55070.1| phage capsid family protein [Mycobacterium tuberculosis SUMu012]
Length=392
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/371 (89%), Positives = 352/371 (95%), Gaps = 0/371 (0%)
Query 109 CVRDGLMSSRAAEAAETLCRTGPPQSTSWAQRWLAATGNRDYLGAFVKRVSNPVAGHTTW 168
CVRDGLMSSRAAE AETLCRTGPPQSTSWAQRWLAATG+RDYLGAFVKRVSNPVAGHT W
Sbjct 22 CVRDGLMSSRAAETAETLCRTGPPQSTSWAQRWLAATGSRDYLGAFVKRVSNPVAGHTVW 81
Query 169 TDREAAAWREAAAVAAEQRAMGLVDTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQT 228
TDREAAAWREAAAVAAEQRAMGLVDT GGFLIPAALDPAILLSGDGSTNPIRQVARVVQT
Sbjct 82 TDREAAAWREAAAVAAEQRAMGLVDTQGGFLIPAALDPAILLSGDGSTNPIRQVARVVQT 141
Query 229 TSEVWRGVTSEGAEAHWYSEAQEVSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAAGFVA 288
TSE+WRGVTSEGAEA WYSEAQEVSDDSP LAQPAVP+YRGSCWIPFS+E+EGDAA FV
Sbjct 142 TSEIWRGVTSEGAEARWYSEAQEVSDDSPALAQPAVPNYRGSCWIPFSIELEGDAASFVG 201
Query 289 EVGRVLADSVEQLQAAAFVSGSGNGEPTGFVSALTGTADYTVTGAGTEAVVAADVYALQS 348
E+G++LADSVEQLQAAAFV+GSGNGEPTGFVSALTGT+D V GAG+EA+VAADVYALQS
Sbjct 202 EIGKILADSVEQLQAAAFVNGSGNGEPTGFVSALTGTSDQVVVGAGSEAIVAADVYALQS 261
Query 349 ALPPRFQSNSAFAANLSTINVLRQAETANGALKFPSLHASPPMLAGKHIWEVSNMDTVDA 408
ALPPRFQ+++AFAANLSTIN LRQAET+NGALKFPSLH SPPMLAGK + EVS+MDTVD+
Sbjct 262 ALPPRFQASAAFAANLSTINTLRQAETSNGALKFPSLHDSPPMLAGKSVLEVSHMDTVDS 321
Query 409 AVTATNYPLVLGDWKQFIITDRVGSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDN 468
AVTATN+PLVLGDWKQF+I DRVGS VELVPH+FG NRRPTGQRGFF WFRVGSDVLV N
Sbjct 322 AVTATNHPLVLGDWKQFLIGDRVGSMVELVPHLFGPNRRPTGQRGFFAWFRVGSDVLVRN 381
Query 469 AFRVLKVQTTA 479
AFRVLKV+TTA
Sbjct 382 AFRVLKVETTA 392
>gi|308372556|ref|ZP_07429056.2| phage capsid family protein [Mycobacterium tuberculosis SUMu004]
gi|308332841|gb|EFP21692.1| phage capsid family protein [Mycobacterium tuberculosis SUMu004]
Length=370
Score = 635 bits (1639), Expect = 3e-180, Method: Compositional matrix adjust.
Identities = 327/370 (89%), Positives = 351/370 (95%), Gaps = 0/370 (0%)
Query 110 VRDGLMSSRAAEAAETLCRTGPPQSTSWAQRWLAATGNRDYLGAFVKRVSNPVAGHTTWT 169
+RDGLMSSRAAE AETLCRTGPPQSTSWAQRWLAATG+RDYLGAFVKRVSNPVAGHT WT
Sbjct 1 MRDGLMSSRAAETAETLCRTGPPQSTSWAQRWLAATGSRDYLGAFVKRVSNPVAGHTVWT 60
Query 170 DREAAAWREAAAVAAEQRAMGLVDTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTT 229
DREAAAWREAAAVAAEQRAMGLVDT GGFLIPAALDPAILLSGDGSTNPIRQVARVVQTT
Sbjct 61 DREAAAWREAAAVAAEQRAMGLVDTQGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTT 120
Query 230 SEVWRGVTSEGAEAHWYSEAQEVSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAAGFVAE 289
SE+WRGVTSEGAEA WYSEAQEVSDDSP LAQPAVP+YRGSCWIPFS+E+EGDAA FV E
Sbjct 121 SEIWRGVTSEGAEARWYSEAQEVSDDSPALAQPAVPNYRGSCWIPFSIELEGDAASFVGE 180
Query 290 VGRVLADSVEQLQAAAFVSGSGNGEPTGFVSALTGTADYTVTGAGTEAVVAADVYALQSA 349
+G++LADSVEQLQAAAFV+GSGNGEPTGFVSALTGT+D V GAG+EA+VAADVYALQSA
Sbjct 181 IGKILADSVEQLQAAAFVNGSGNGEPTGFVSALTGTSDQVVVGAGSEAIVAADVYALQSA 240
Query 350 LPPRFQSNSAFAANLSTINVLRQAETANGALKFPSLHASPPMLAGKHIWEVSNMDTVDAA 409
LPPRFQ+++AFAANLSTIN LRQAET+NGALKFPSLH SPPMLAGK + EVS+MDTVD+A
Sbjct 241 LPPRFQASAAFAANLSTINTLRQAETSNGALKFPSLHDSPPMLAGKSVLEVSHMDTVDSA 300
Query 410 VTATNYPLVLGDWKQFIITDRVGSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNA 469
VTATN+PLVLGDWKQF+I DRVGS VELVPH+FG NRRPTGQRGFF WFRVGSDVLV NA
Sbjct 301 VTATNHPLVLGDWKQFLIGDRVGSMVELVPHLFGPNRRPTGQRGFFAWFRVGSDVLVRNA 360
Query 470 FRVLKVQTTA 479
FRVLKV+TTA
Sbjct 361 FRVLKVETTA 370
>gi|289448305|ref|ZP_06438049.1| LOW QUALITY PROTEIN: phiRv2 phage protein [Mycobacterium tuberculosis
CPHL_A]
gi|289421263|gb|EFD18464.1| LOW QUALITY PROTEIN: phiRv2 phage protein [Mycobacterium tuberculosis
CPHL_A]
Length=366
Score = 617 bits (1591), Expect = 1e-174, Method: Compositional matrix adjust.
Identities = 333/356 (94%), Positives = 337/356 (95%), Gaps = 3/356 (0%)
Query 126 LCRTGPPQSTSWAQRWLAATGNRDYLGAFVKR--VSNPVAGHTTWTDREAAAWREAAAVA 183
LCRTGPPQS + LA + L V++ NPVAGHTTWTDREAAAWREAAAVA
Sbjct 12 LCRTGPPQS-NLVGAALAGGHRQPRLPGGVRQEGFRNPVAGHTTWTDREAAAWREAAAVA 70
Query 184 AEQRAMGLVDTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEVWRGVTSEGAEA 243
AEQRAMGLVDTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEVWRGVTSEGAEA
Sbjct 71 AEQRAMGLVDTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEVWRGVTSEGAEA 130
Query 244 HWYSEAQEVSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAAGFVAEVGRVLADSVEQLQA 303
HWYSEAQEVSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAAGFVAEVGRVLADSVEQLQA
Sbjct 131 HWYSEAQEVSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAAGFVAEVGRVLADSVEQLQA 190
Query 304 AAFVSGSGNGEPTGFVSALTGTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAFAAN 363
AAFVSGSGNGEPTGFVSALTGTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAFAAN
Sbjct 191 AAFVSGSGNGEPTGFVSALTGTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAFAAN 250
Query 364 LSTINVLRQAETANGALKFPSLHASPPMLAGKHIWEVSNMDTVDAAVTATNYPLVLGDWK 423
LSTINVLRQAETANGALKFPSLHASPPMLAGKHIWEVSNMDTVDAAVTATNYPLVLGDWK
Sbjct 251 LSTINVLRQAETANGALKFPSLHASPPMLAGKHIWEVSNMDTVDAAVTATNYPLVLGDWK 310
Query 424 QFIITDRVGSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKVQTTA 479
QFIITDRVGSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKVQTTA
Sbjct 311 QFIITDRVGSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKVQTTA 366
>gi|167966951|ref|ZP_02549228.1| putative phiRv1 phage protein [Mycobacterium tuberculosis H37Ra]
Length=354
Score = 608 bits (1568), Expect = 6e-172, Method: Compositional matrix adjust.
Identities = 312/354 (89%), Positives = 336/354 (95%), Gaps = 0/354 (0%)
Query 126 LCRTGPPQSTSWAQRWLAATGNRDYLGAFVKRVSNPVAGHTTWTDREAAAWREAAAVAAE 185
+CRTGPPQSTSWAQRWLAATG+RDYLGAFVKRVSNPVAGHT WTDREAAAWREAAAVAAE
Sbjct 1 MCRTGPPQSTSWAQRWLAATGSRDYLGAFVKRVSNPVAGHTVWTDREAAAWREAAAVAAE 60
Query 186 QRAMGLVDTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEVWRGVTSEGAEAHW 245
QRAMGLVDT GGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSE+WRGVTSEGAEA W
Sbjct 61 QRAMGLVDTQGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEIWRGVTSEGAEARW 120
Query 246 YSEAQEVSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAAGFVAEVGRVLADSVEQLQAAA 305
YSEAQEVSDDSP LAQPAVP+YRGSCWIPFS+E+EGDAA FV E+G++LADSVEQLQAAA
Sbjct 121 YSEAQEVSDDSPALAQPAVPNYRGSCWIPFSIELEGDAASFVGEIGKILADSVEQLQAAA 180
Query 306 FVSGSGNGEPTGFVSALTGTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAFAANLS 365
FV+GSGNGEPTGFVSALTGT+D V GAG+EA+VAADVYALQSALPPRFQ+++AFAANLS
Sbjct 181 FVNGSGNGEPTGFVSALTGTSDQVVVGAGSEAIVAADVYALQSALPPRFQASAAFAANLS 240
Query 366 TINVLRQAETANGALKFPSLHASPPMLAGKHIWEVSNMDTVDAAVTATNYPLVLGDWKQF 425
TIN LRQAET+NGALKFPSLH SPPMLAGK + EVS+MDTVD+AVTATN+PLVLGDWKQF
Sbjct 241 TINTLRQAETSNGALKFPSLHDSPPMLAGKSVLEVSHMDTVDSAVTATNHPLVLGDWKQF 300
Query 426 IITDRVGSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKVQTTA 479
+I DRVGS VELVPH+FG NRRPTGQRGFF WFRVGSDVLV NAFRVLKV+TTA
Sbjct 301 LIGDRVGSMVELVPHLFGPNRRPTGQRGFFAWFRVGSDVLVRNAFRVLKVETTA 354
>gi|240172573|ref|ZP_04751232.1| phiRv2 prophage protein [Mycobacterium kansasii ATCC 12478]
Length=486
Score = 473 bits (1218), Expect = 2e-131, Method: Compositional matrix adjust.
Identities = 245/482 (51%), Positives = 327/482 (68%), Gaps = 15/482 (3%)
Query 12 DIKQLSLDETRSAAKQLLDSVEGDLTGDVAQRFQALTRHAEELRAEQ----RRRGREAEE 67
+I ++++ R+AA+QLLDS +GDLTG A+RFQALT HAE+LR Q RR +
Sbjct 6 EIDFTTVEQCRAAAQQLLDSTDGDLTGPAAERFQALTLHAEQLRERQAQRDRRHATDLAA 65
Query 68 ALRRCRAGELRVVPGA----PTGGD-----DGDAPPGNSLRDIAFRTLDVCVRDGLMSSR 118
+R ++GELR GA G+ D D P + RD A RT++ + GL+++
Sbjct 66 MVRGLQSGELRTEGGANGMHTLNGEQRSQYDEDRPAPDRQRDSAMRTIERSHKAGLLAAG 125
Query 119 AAEAAETLCRTGPPQSTSWAQRWLAATGNRDYLGAFVKRVSNPVAGHTTWTDREAAAWRE 178
AE AE L +GP + SWA RW+A TG Y AF K V +P GH +T E A+R
Sbjct 126 GAEVAERLVGSGPAPARSWAARWIAETGCEKYREAFSKLVLDPQRGHLQFTPAEGEAFRR 185
Query 179 AAAVAAEQRAMGLVDTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEVWRGVTS 238
A+ AEQRAM L D AGGFL+P LDP +LLS DGS NP+ +++RV+QT S+VW GVTS
Sbjct 186 VTALQAEQRAMSLTDAAGGFLVPFELDPTVLLSSDGSNNPLMKISRVIQTVSDVWHGVTS 245
Query 239 EGAEAHWYSEAQEVSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAAGFVAEVGRVLADSV 298
EG A W E+ E +D SPTL QPA+PS + S ++PFS+E++GDA + E+GR+L D
Sbjct 246 EGVVAEWLPESSEAADASPTLTQPAIPSCKASVFVPFSVELQGDATTLMQELGRLLQDGA 305
Query 299 EQLQAAAFVSGSGNGEPTGFVSALTGTADYTVTGAGTEAVVAADVYALQSALPPRFQSNS 358
+QL A AF +GSG G+PTG +SAL G + VTG G+EA+ A+D+Y +QS LPPRFQ +
Sbjct 306 DQLLATAFTTGSGTGQPTGIISALAGGSS-VVTGDGSEALAASDIYKVQSMLPPRFQPRA 364
Query 359 AFAANLSTINVLRQAETANGALKFPSLHASPPMLAGKHIWEVSNMD-TVDAAVTATNYPL 417
++ ANLS +N +RQ ET NGAL+FP L SPP L G++I+E SNMD +++ A T TN+ L
Sbjct 365 SWNANLSILNTIRQFETTNGALRFPELSTSPPKLLGRNIYENSNMDGSLNTAATETNHVL 424
Query 418 VLGDWKQFIITDRVGSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKVQT 477
+ GD+ QF IT R GS++EL+PH+ G NRRPTG+RG + W RVGSDVLVDNAFR+L V T
Sbjct 425 LYGDFSQFAITMRTGSSLELIPHLVGANRRPTGERGAWLWMRVGSDVLVDNAFRLLNVPT 484
Query 478 TA 479
+A
Sbjct 485 SA 486
>gi|289570824|ref|ZP_06451051.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289544578|gb|EFD48226.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
Length=216
Score = 440 bits (1132), Expect = 2e-121, Method: Compositional matrix adjust.
Identities = 215/216 (99%), Positives = 216/216 (100%), Gaps = 0/216 (0%)
Query 264 VPSYRGSCWIPFSLEIEGDAAGFVAEVGRVLADSVEQLQAAAFVSGSGNGEPTGFVSALT 323
+PSYRGSCWIPFSLEIEGDAAGFVAEVGRVLADSVEQLQAAAFVSGSGNGEPTGFVSALT
Sbjct 1 MPSYRGSCWIPFSLEIEGDAAGFVAEVGRVLADSVEQLQAAAFVSGSGNGEPTGFVSALT 60
Query 324 GTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAFAANLSTINVLRQAETANGALKFP 383
GTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAFAANLSTINVLRQAETANGALKFP
Sbjct 61 GTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAFAANLSTINVLRQAETANGALKFP 120
Query 384 SLHASPPMLAGKHIWEVSNMDTVDAAVTATNYPLVLGDWKQFIITDRVGSTVELVPHVFG 443
SLHASPPMLAGKHIWEVSNMDTVDAAVTATNYPLVLGDWKQFIITDRVGSTVELVPHVFG
Sbjct 121 SLHASPPMLAGKHIWEVSNMDTVDAAVTATNYPLVLGDWKQFIITDRVGSTVELVPHVFG 180
Query 444 GNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKVQTTA 479
GNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKVQTTA
Sbjct 181 GNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKVQTTA 216
>gi|289569612|ref|ZP_06449839.1| hypothetical protein TBJG_04301 [Mycobacterium tuberculosis T17]
gi|289543366|gb|EFD47014.1| hypothetical protein TBJG_04301 [Mycobacterium tuberculosis T17]
Length=266
Score = 416 bits (1069), Expect = 5e-114, Method: Compositional matrix adjust.
Identities = 222/246 (91%), Positives = 234/246 (96%), Gaps = 0/246 (0%)
Query 98 LRDIAFRTLDVCVRDGLMSSRAAEAAETLCRTGPPQSTSWAQRWLAATGNRDYLGAFVKR 157
+RD AFRTLD CVRDGLMSSRAAE AETLCRTGPPQSTSWAQRWLAATG+RDYLGAFVKR
Sbjct 1 MRDTAFRTLDSCVRDGLMSSRAAETAETLCRTGPPQSTSWAQRWLAATGSRDYLGAFVKR 60
Query 158 VSNPVAGHTTWTDREAAAWREAAAVAAEQRAMGLVDTAGGFLIPAALDPAILLSGDGSTN 217
VSNPVAGHT WTDREAAAWREAAAVAAEQRAMGLVDT GGFLIPAALDPAILLSGDGSTN
Sbjct 61 VSNPVAGHTVWTDREAAAWREAAAVAAEQRAMGLVDTQGGFLIPAALDPAILLSGDGSTN 120
Query 218 PIRQVARVVQTTSEVWRGVTSEGAEAHWYSEAQEVSDDSPTLAQPAVPSYRGSCWIPFSL 277
PIRQVARVVQTTSE+WRGVTSEGAEA WYSEAQEVSDDSP LAQPAVP+YRGSCWIPFS+
Sbjct 121 PIRQVARVVQTTSEIWRGVTSEGAEARWYSEAQEVSDDSPALAQPAVPNYRGSCWIPFSI 180
Query 278 EIEGDAAGFVAEVGRVLADSVEQLQAAAFVSGSGNGEPTGFVSALTGTADYTVTGAGTEA 337
E+EGDAA FV E+G++LADSVEQLQAAAFVSGSGNGEPTGFVSALTGT+D V GAG+EA
Sbjct 181 ELEGDAASFVGEIGKILADSVEQLQAAAFVSGSGNGEPTGFVSALTGTSDQVVVGAGSEA 240
Query 338 VVAADV 343
+VAADV
Sbjct 241 IVAADV 246
>gi|289751273|ref|ZP_06510651.1| phiRv2 phage protein [Mycobacterium tuberculosis T92]
gi|289691860|gb|EFD59289.1| phiRv2 phage protein [Mycobacterium tuberculosis T92]
Length=202
Score = 403 bits (1036), Expect = 3e-110, Method: Compositional matrix adjust.
Identities = 199/201 (99%), Positives = 199/201 (99%), Gaps = 0/201 (0%)
Query 279 IEGDAAGFVAEVGRVLADSVEQLQAAAFVSGSGNGEPTGFVSALTGTADYTVTGAGTEAV 338
IEG AGFVAEVGRVLADSVEQLQAAAFVSGSGNGEPTGFVSALTGTADYTVTGAGTEAV
Sbjct 2 IEGATAGFVAEVGRVLADSVEQLQAAAFVSGSGNGEPTGFVSALTGTADYTVTGAGTEAV 61
Query 339 VAADVYALQSALPPRFQSNSAFAANLSTINVLRQAETANGALKFPSLHASPPMLAGKHIW 398
VAADVYALQSALPPRFQSNSAFAANLSTINVLRQAETANGALKFPSLHASPPMLAGKHIW
Sbjct 62 VAADVYALQSALPPRFQSNSAFAANLSTINVLRQAETANGALKFPSLHASPPMLAGKHIW 121
Query 399 EVSNMDTVDAAVTATNYPLVLGDWKQFIITDRVGSTVELVPHVFGGNRRPTGQRGFFCWF 458
EVSNMDTVDAAVTATNYPLVLGDWKQFIITDRVGSTVELVPHVFGGNRRPTGQRGFFCWF
Sbjct 122 EVSNMDTVDAAVTATNYPLVLGDWKQFIITDRVGSTVELVPHVFGGNRRPTGQRGFFCWF 181
Query 459 RVGSDVLVDNAFRVLKVQTTA 479
RVGSDVLVDNAFRVLKVQTTA
Sbjct 182 RVGSDVLVDNAFRVLKVQTTA 202
>gi|226307463|ref|YP_002767423.1| hypothetical protein RER_39760 [Rhodococcus erythropolis PR4]
gi|226186580|dbj|BAH34684.1| hypothetical protein RER_39760 [Rhodococcus erythropolis PR4]
Length=473
Score = 345 bits (884), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 196/465 (43%), Positives = 283/465 (61%), Gaps = 27/465 (5%)
Query 22 RSAAKQLLDSVEGDLTGDVAQRFQALTRHAEELR--AEQRRRGREAEEALRRCRAGELRV 79
R+ A +L + +E LT D ++RF +L E ++ EQ R RE EA AG
Sbjct 29 RTEATELTERIE--LTADDSERFDSLADDLEYIKRALEQHSRLRELVEA-GSIEAGASFG 85
Query 80 VPGAPTGGDDGDAPPGNSLRDIAFRTLDVCVRDGLMSSRAAEAAETLCRTGPPQSTSWAQ 139
V GA T D + +RD A R ++ + G ++ AA +E L T S A
Sbjct 86 VGGASTHKDS------DPVRDQALRNIERAHKAGRLTESAATLSEHLVGT-----DSVAA 134
Query 140 RWLAATGNRDYLGAFVKRVSNPVAGHTTWTDREAAAWREAAAVAAEQRAMGLVDTAGG-- 197
R A TG+ Y AF K V++P GH WT E A+R+A + GL++ +GG
Sbjct 135 RLAATTGSDAYRSAFAKLVTDPQRGHMLWTPDEGQAYRDA------DKVRGLIEGSGGTG 188
Query 198 -FLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEVWRGVTSEGAEAHWYSEAQEVSDDS 256
L+P LDP+++L+ GS +P+R+++RVVQT S W GV+S G + W +E + D +
Sbjct 189 KHLVPWDLDPSVILTNAGSVSPLREISRVVQTNSNAWNGVSSAGVTSDWTAETAQAPDGT 248
Query 257 PTLAQPAVPSYRGSCWIPFSLEIEGDAAGFVAEVGRVLADSVEQLQAAAFVSGSGNGEPT 316
PTL +P ++ + W+PFS+E+E D +AE+ ++L DS QL+ AF +GSG+G+PT
Sbjct 249 PTLVPEPIPVHKAASWVPFSIELEQDGLHLLAELQKLLVDSAVQLENTAFATGSGSGQPT 308
Query 317 GFVSALTGT-ADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAFAANLSTINVLRQAET 375
G ++AL V G GTEA+V+ADVYALQ+AL R+Q+N++FA NL+ +N +RQ ET
Sbjct 309 GLITALVAAGGSVIVPGTGTEALVSADVYALQNALGSRWQANASFAGNLAVLNTIRQFET 368
Query 376 ANGALKFPSLHASPPMLAGKHIWEVSNMD-TVDAAVTATNYPLVLGDWKQFIITDRVGST 434
NGALKFPS P L + + E+S MD ++AA T +NY LV GD++ F+I DRVG+T
Sbjct 369 TNGALKFPSAQNVPASLLSRPLHEISGMDGVINAAATESNYSLVYGDFQNFVIVDRVGTT 428
Query 435 VELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKVQTTA 479
VELVPH+ G N RPTG+RG + + RVGSDV+ AF++L++ TTA
Sbjct 429 VELVPHLMGANGRPTGERGLYMFRRVGSDVVNPAAFKLLRINTTA 473
>gi|307085346|ref|ZP_07494459.1| hypothetical protein TMLG_04087 [Mycobacterium tuberculosis SUMu012]
gi|308365111|gb|EFP53962.1| hypothetical protein TMLG_04087 [Mycobacterium tuberculosis SUMu012]
Length=177
Score = 315 bits (808), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 156/164 (96%), Positives = 157/164 (96%), Gaps = 0/164 (0%)
Query 1 MTNEQHFADDGDIKQLSLDETRSAAKQLLDSVEGDLTGDVAQRFQALTRHAEELRAEQRR 60
MTNEQHFADDGDIKQLSLDETRSAAKQLLDSVEGDLTGDVAQRFQALTRHAEELRAEQRR
Sbjct 1 MTNEQHFADDGDIKQLSLDETRSAAKQLLDSVEGDLTGDVAQRFQALTRHAEELRAEQRR 60
Query 61 RGREAEEALRRCRAGELRVVPGAPTGGDDGDAPPGNSLRDIAFRTLDVCVRDGLMSSRAA 120
RGREAEEALRRCRAGELRVVPGAPTGGDDGDAPPGNSLRDIAFRTLDVCVRDGLMSSRAA
Sbjct 61 RGREAEEALRRCRAGELRVVPGAPTGGDDGDAPPGNSLRDIAFRTLDVCVRDGLMSSRAA 120
Query 121 EAAETLCRTGPPQSTSWAQRWLAATGNRDYLGAFVKRVSNPVAG 164
EAAETLCRTGPPQSTSWAQRWLAATGNRDYLGAF + P G
Sbjct 121 EAAETLCRTGPPQSTSWAQRWLAATGNRDYLGAFGQEGFEPCCG 164
>gi|307084156|ref|ZP_07493269.1| hypothetical protein TMLG_00562 [Mycobacterium tuberculosis SUMu012]
gi|308366211|gb|EFP55062.1| hypothetical protein TMLG_00562 [Mycobacterium tuberculosis SUMu012]
Length=159
Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 142/153 (93%), Positives = 144/153 (95%), Gaps = 0/153 (0%)
Query 12 DIKQLSLDETRSAAKQLLDSVEGDLTGDVAQRFQALTRHAEELRAEQRRRGREAEEALRR 71
DIK LSL ETR AAKQLLDSV GDLTG+ AQRFQALTRHAEELRAEQRRRGREAEEALRR
Sbjct 6 DIKNLSLPETRDAAKQLLDSVAGDLTGEAAQRFQALTRHAEELRAEQRRRGREAEEALRR 65
Query 72 CRAGELRVVPGAPTGGDDGDAPPGNSLRDIAFRTLDVCVRDGLMSSRAAEAAETLCRTGP 131
RAGELRVVPGAPTGGDDGDAPPGNSLRD AFRTLD CVRDGLMSSRAAE AETLCRTGP
Sbjct 66 YRAGELRVVPGAPTGGDDGDAPPGNSLRDTAFRTLDSCVRDGLMSSRAAETAETLCRTGP 125
Query 132 PQSTSWAQRWLAATGNRDYLGAFVKRVSNPVAG 164
PQSTSWAQRWLAATG+RDYLGAFVKRVSNPVAG
Sbjct 126 PQSTSWAQRWLAATGSRDYLGAFVKRVSNPVAG 158
>gi|289751274|ref|ZP_06510652.1| phiRv1 phage protein [Mycobacterium tuberculosis T92]
gi|289691861|gb|EFD59290.1| phiRv1 phage protein [Mycobacterium tuberculosis T92]
Length=175
Score = 266 bits (680), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 135/166 (82%), Positives = 140/166 (85%), Gaps = 0/166 (0%)
Query 12 DIKQLSLDETRSAAKQLLDSVEGDLTGDVAQRFQALTRHAEELRAEQRRRGREAEEALRR 71
DIK LSL ETR AAKQLLDSV GDLTG+ AQRFQALTRHAEELRAEQRRRGREAEEALRR
Sbjct 6 DIKNLSLPETRDAAKQLLDSVAGDLTGEAAQRFQALTRHAEELRAEQRRRGREAEEALRR 65
Query 72 CRAGELRVVPGAPTGGDDGDAPPGNSLRDIAFRTLDVCVRDGLMSSRAAEAAETLCRTGP 131
RAGELRVVPGAPTGGDDGDAPPGNSLRD AFRTLD CVRDGLMSSRAAE AETLCRTGP
Sbjct 66 YRAGELRVVPGAPTGGDDGDAPPGNSLRDTAFRTLDSCVRDGLMSSRAAETAETLCRTGP 125
Query 132 PQSTSWAQRWLAATGNRDYLGAFVKRVSNPVAGHTTWTDREAAAWR 177
PQSTSWAQRWLA TG+RDY+ FV R+S P A + WR
Sbjct 126 PQSTSWAQRWLAGTGSRDYMDPFVTRISGPAACLNRRRPEKQRRWR 171
>gi|306804415|ref|ZP_07441083.1| hypothetical protein TMHG_01848 [Mycobacterium tuberculosis SUMu008]
gi|308348977|gb|EFP37828.1| hypothetical protein TMHG_01848 [Mycobacterium tuberculosis SUMu008]
Length=129
Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 128/129 (99%), Positives = 128/129 (99%), Gaps = 0/129 (0%)
Query 1 MTNEQHFADDGDIKQLSLDETRSAAKQLLDSVEGDLTGDVAQRFQALTRHAEELRAEQRR 60
MTNEQHFADDGDIKQLSLDETRSAAKQLLDSVEGDLTGDVAQRFQALTRHAEELRAEQRR
Sbjct 1 MTNEQHFADDGDIKQLSLDETRSAAKQLLDSVEGDLTGDVAQRFQALTRHAEELRAEQRR 60
Query 61 RGREAEEALRRCRAGELRVVPGAPTGGDDGDAPPGNSLRDIAFRTLDVCVRDGLMSSRAA 120
RGREAEEALRRCRAGELRVVPGAPTGGDDGDAPPGNSLRD AFRTLDVCVRDGLMSSRAA
Sbjct 61 RGREAEEALRRCRAGELRVVPGAPTGGDDGDAPPGNSLRDTAFRTLDVCVRDGLMSSRAA 120
Query 121 EAAETLCRT 129
EAAETLCRT
Sbjct 121 EAAETLCRT 129
>gi|290959236|ref|YP_003490418.1| phage capsid protein [Streptomyces scabiei 87.22]
gi|260648762|emb|CBG71875.1| putative phage capsid protein [Streptomyces scabiei 87.22]
Length=493
Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 136/293 (47%), Positives = 193/293 (66%), Gaps = 3/293 (1%)
Query 184 AEQRAMGLVDTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEVWRGVTSEGAEA 243
A +RAM L D+AGG+L+P LDP I+++ +GS N IRQVAR V T ++W GV+S
Sbjct 202 ALERAMSLTDSAGGYLVPFQLDPTIIITANGSINQIRQVARQVVATGDIWNGVSSGSVSW 261
Query 244 HWYSEAQEVSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAAGFVAEVGRVLADSVEQLQA 303
W +EA E SD++PTLAQP VP Y+ ++P S+E DA EVGR+LA + L+A
Sbjct 262 RWAAEASEASDNAPTLAQPTVPVYKADGFVPISIEAMDDAENVTTEVGRLLAFGKDTLEA 321
Query 304 AAFVSGSGNGEPTGFVSALTGTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAFAAN 363
AA +GSG+G+PTG V+ALTGT+ VT T+ + DVY + +ALP R++ N+A+ AN
Sbjct 322 AALATGSGSGQPTGIVTALTGTS-SIVTSTTTDTFASGDVYKVDTALPGRYRPNAAWLAN 380
Query 364 LSTINVLRQAETANGALKFPSLHAS-PPMLAGKHIWEVSNMDTVDAAVTATNYPLVLGDW 422
N +RQ +++ G + + A PPML G+ E +MD V A A NY +V GD+
Sbjct 381 RGIYNAVRQFDSSGGTNLWERIGADVPPMLLGRKALESEDMDGVVTAA-AENYVMVYGDF 439
Query 423 KQFIITDRVGSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKV 475
++I DR+G ++E +PH+ G NRRPTGQRG++ W+RVG+D + D AFR+L V
Sbjct 440 DNYVIADRIGMSIEFLPHLVGANRRPTGQRGWYAWYRVGADSVNDGAFRMLNV 492
>gi|15843075|ref|NP_338112.1| hypothetical protein MT3573.12 [Mycobacterium tuberculosis CDC1551]
gi|13883420|gb|AAK47926.1| hypothetical protein MT3573.12 [Mycobacterium tuberculosis CDC1551]
Length=141
Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 120/141 (86%), Positives = 132/141 (94%), Gaps = 0/141 (0%)
Query 339 VAADVYALQSALPPRFQSNSAFAANLSTINVLRQAETANGALKFPSLHASPPMLAGKHIW 398
+AADVYALQSALPPRFQ+++AFAANLSTIN LRQAET+NGALKFPSLH SPPMLAGK +
Sbjct 1 MAADVYALQSALPPRFQASAAFAANLSTINTLRQAETSNGALKFPSLHDSPPMLAGKSVL 60
Query 399 EVSNMDTVDAAVTATNYPLVLGDWKQFIITDRVGSTVELVPHVFGGNRRPTGQRGFFCWF 458
EVS+MDTVD+AVTATN+PLVLGDWKQF+I DRVGS VELVPH+FG NRRPTGQRGFF WF
Sbjct 61 EVSHMDTVDSAVTATNHPLVLGDWKQFLIGDRVGSMVELVPHLFGPNRRPTGQRGFFAWF 120
Query 459 RVGSDVLVDNAFRVLKVQTTA 479
RVGSDVLV NAFRVLKV+TTA
Sbjct 121 RVGSDVLVRNAFRVLKVETTA 141
>gi|206599551|ref|YP_002241990.1| gp7 [Mycobacterium phage Brujita]
gi|206282700|gb|ACI06221.1| gp7 [Mycobacterium phage Brujita]
gi|302858444|gb|ADL71191.1| gp7 [Mycobacterium phage island3]
Length=515
Score = 239 bits (610), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 138/367 (38%), Positives = 209/367 (57%), Gaps = 14/367 (3%)
Query 116 SSRAAEAAETLCRTGPPQSTSWAQRWLAATGNRDYLGAFVKRVSNPVAGHTTWTDREAAA 175
S + EAA + + ++ A++ L T + Y+ A+ K NP + ++ A
Sbjct 160 SDKVREAATKIIERFDDKHSTLARQCLL-TSSPAYMRAWSKMARNPHGAILSEDEKRALN 218
Query 176 WREAAAVAAEQRAMGLVDTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEVWRG 235
E RAMGL D+ GG+L+P LDPA++++ +GS N IR AR V T + W G
Sbjct 219 ---------EVRAMGLTDSDGGYLVPFQLDPAVIVTSNGSLNDIRMFARQVVATGDKWNG 269
Query 236 VTSEGAEAHWYSEAQEVSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAAGFVAEVGRVLA 295
VTS + W +E +EVSDD+PT QP +P + ++P S+E D A V +LA
Sbjct 270 VTSAAVQWSWDAEFEEVSDDAPTFGQPDIPIKKAQGFVPISIEALADEANVTQTVATLLA 329
Query 296 DSVEQLQAAAFVSGSGNG-EPTGFVSALTGTADYTVTGAGTEAVVAADVYALQSALPPRF 354
+ ++L+A ++GSG G EPTG V+AL GTA + A E ADVY + L R
Sbjct 330 EGKDELEAVTLITGSGQGNEPTGIVTALAGTA-AEIAPATAETFAIADVYGVYEQLAARH 388
Query 355 QSNSAFAANLSTINVLRQAETANGALKFPSL-HASPPMLAGKHIWEVSNMD-TVDAAVTA 412
+ A+ AN N +RQ +T GA + ++ + P L G+ + E MD T D TA
Sbjct 389 RKRGAWLANNLIYNKIRQFDTQGGAGLWETIGNGEPSQLLGRPVGEAEAMDATWDGTATA 448
Query 413 TNYPLVLGDWKQFIITDRVGSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRV 472
NY L+ G+++ ++I DR+G TVE +PH+FG ++RPTGQRG++ + R+G+DV+ NAFR+
Sbjct 449 DNYVLLYGNFQNYVIADRIGMTVEFIPHLFGSSQRPTGQRGWYAYCRMGADVVNPNAFRL 508
Query 473 LKVQTTA 479
L V+T +
Sbjct 509 LNVETAS 515
>gi|15843074|ref|NP_338111.1| hypothetical protein MT3573.11 [Mycobacterium tuberculosis CDC1551]
gi|13883419|gb|AAK47925.1| hypothetical protein MT3573.11 [Mycobacterium tuberculosis CDC1551]
Length=224
Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 134/145 (93%), Positives = 138/145 (96%), Gaps = 0/145 (0%)
Query 98 LRDIAFRTLDVCVRDGLMSSRAAEAAETLCRTGPPQSTSWAQRWLAATGNRDYLGAFVKR 157
+RD AFRTLD CVRDGLMSSRAAE AETLCRTGPPQSTSWAQRWLAATG+RDYLGAFVKR
Sbjct 1 MRDTAFRTLDSCVRDGLMSSRAAETAETLCRTGPPQSTSWAQRWLAATGSRDYLGAFVKR 60
Query 158 VSNPVAGHTTWTDREAAAWREAAAVAAEQRAMGLVDTAGGFLIPAALDPAILLSGDGSTN 217
VSNPVAGHT WTDREAAAWREAAAVAAEQRAMGLVDT GGFLIPAALDPAILLSGDGSTN
Sbjct 61 VSNPVAGHTVWTDREAAAWREAAAVAAEQRAMGLVDTQGGFLIPAALDPAILLSGDGSTN 120
Query 218 PIRQVARVVQTTSEVWRGVTSEGAE 242
PIRQVARVVQTTSE+WRGVTSE +
Sbjct 121 PIRQVARVVQTTSEIWRGVTSEAPK 145
>gi|29566114|ref|NP_817683.1| gp6 [Mycobacterium phage Che9c]
gi|29424839|gb|AAN12566.1| gp6 [Mycobacterium phage Che9c]
Length=543
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 160/471 (34%), Positives = 240/471 (51%), Gaps = 45/471 (9%)
Query 44 FQALTRHAEEL-RAEQRRRGREAEEALRRCRAG---ELRVVPGAPTGGD---DGDAP-PG 95
F +L H L RA + R R E + + ++G +RV G+ GG D DA
Sbjct 83 FDSLVNHMSRLERAAELARVRSTHEQIGKPQSGGQRRMRVEAGSSQGGRGDYDRDAILEP 142
Query 96 NSLRDIAFR------TLDVCVRD-----GLMSSRAAEAAETL------CRTGPPQ----- 133
+S+ D FR + RD G + +RA A E + R +
Sbjct 143 DSIEDCRFRDPWNLSEMRTFGRDAEEVKGELRARALSAIEKMQGASDNVRAAATKIIERF 202
Query 134 --STSWAQRWLAATGNRDYLGAFVKRVSNPVAGHTTWTDREAAAWREAAAVAAEQRAMGL 191
S R AT + YL A+ K NP A T ++ A E RAMGL
Sbjct 203 DDEDSTLARQCLATSSPAYLRAWSKMARNPHAAILTEEEKRAIN---------EVRAMGL 253
Query 192 VDTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEVWRGVTSEGAEAHWYSEAQE 251
GG+L+P LDP ++++ +GS N IR+ AR V T +VW GV+S + W +E +E
Sbjct 254 TKADGGYLVPFQLDPTVIITSNGSLNDIRRFARQVVATGDVWHGVSSAAVQWSWDAEFEE 313
Query 252 VSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAAGFVAEVGRVLADSVEQLQAAAFVSGSG 311
VSDDSP QP +P + ++P S+E D A V + A+ ++L+A +G+G
Sbjct 314 VSDDSPEFGQPEIPVKKAQGFVPISIEALQDEANVTETVALLFAEGKDELEAVTLTTGTG 373
Query 312 NG-EPTGFVSALTGTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAFAANLSTINVL 370
G +PTG V+AL GTA + E ADVYA+ L R + A+ AN N +
Sbjct 374 QGNQPTGIVTALAGTA-AEIAPVTAETFALADVYAVYEQLAARHRRQGAWLANNLIYNKI 432
Query 371 RQAETANGALKFPSL-HASPPMLAGKHIWEVSNMD-TVDAAVTATNYPLVLGDWKQFIIT 428
RQ +T GA + ++ + P L G+ + E MD + + +A N+ L+ G+++ ++I
Sbjct 433 RQFDTQGGAGLWTTIGNGEPSQLLGRPVGEAEAMDANWNTSASADNFVLLYGNFQNYVIA 492
Query 429 DRVGSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKVQTTA 479
DR+G TVE +PH+FG NRRP G RG+F ++R+G+DV+ NAFR+L V+T +
Sbjct 493 DRIGMTVEFIPHLFGTNRRPNGSRGWFAYYRMGADVVNPNAFRLLNVETAS 543
>gi|120405315|ref|YP_955144.1| phage major capsid protein, HK97 [Mycobacterium vanbaalenii PYR-1]
gi|119958133|gb|ABM15138.1| phage major capsid protein, HK97 [Mycobacterium vanbaalenii PYR-1]
Length=389
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 133/338 (40%), Positives = 193/338 (58%), Gaps = 23/338 (6%)
Query 144 ATGNRDYLGAFVKRV---SNPVAGHTTWTDREAAAWREAAAVAAEQRAMGLVDTAGGFLI 200
AT + DY AF K + NP T + RE V A QRAM L D GGFL+
Sbjct 68 ATTSPDYSRAFTKMIRSRGNP----TVLSGRE---------VQAYQRAMSLTDNQGGFLV 114
Query 201 PAALDPAILLSGDGSTNPIRQVARVVQTTSEVWRGVTSEGAEAHWYSEAQEVSDDSPTLA 260
P LDP I+L+ +GS N +RQ++RVVQ T + W GVTS G W EA EVSDDSP L
Sbjct 115 PMQLDPTIILTANGSFNQVRQISRVVQATGKSWTGVTSAGVSGSWDGEAVEVSDDSPELQ 174
Query 261 QPAVPSYRGSCWIPFSLEIEGDAAGFVAEVGRVLADSVEQLQAAAFVSGSGNGEPTGFVS 320
QP +P ++ W+ FS E++ DAAG ++ +++A + ++ AF +GSG G+P G ++
Sbjct 175 QPEIPVHKLQIWVEFSHELQHDAAGLADDIAKMIAFEKDVKESIAFATGSGVGQPRGVIT 234
Query 321 ALTGTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAFAANLSTINVLRQAETANGAL 380
AL G+ D V A T+ A DV+ L LP R+ N+++ A+ + +RQ +T GA
Sbjct 235 ALMGS-DSVVNSAVTDTFAAGDVHNLDGDLPQRYAFNASWLAHRKIYSKIRQFDTNGGAS 293
Query 381 KFPSL-HASPPMLAGKHIWEVSNMDTVDAAVT--ATNYPLVLGDWKQFIITDRVGSTVEL 437
+ L L G+ + MD+ ++T N+ L GD++ F+I DR+G+T+
Sbjct 294 LWGQLAEGRKSELLGRPDYVAEAMDS---SITNGQDNHVLAFGDFQNFVIADRLGTTLSY 350
Query 438 VPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKV 475
+P++ G N RP G+ G+ W RVGSDV+ AFR+L V
Sbjct 351 IPNLMGPNGRPVGKAGWHAWIRVGSDVVNPGAFRLLNV 388
>gi|317125799|ref|YP_004099911.1| hypothetical protein Intca_2682 [Intrasporangium calvum DSM 43043]
gi|315589887|gb|ADU49184.1| hypothetical protein Intca_2682 [Intrasporangium calvum DSM 43043]
Length=528
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 152/446 (35%), Positives = 217/446 (49%), Gaps = 37/446 (8%)
Query 53 ELRAEQRRRGREAEEALRRCRAGELRVVPGAPTGGDDGDAPPG-------------NSLR 99
ELR R R A+ + R R G LR A G D DA G +R
Sbjct 94 ELRDRVTRHQRLAK--VLRDRPGTLR---AAYHGLADDDASGGTFDAWTDVARMSDQQVR 148
Query 100 DIAFRTLDVCVRDGLMSSRAAEAAETLCRT-----GPPQSTSWAQRWLAATGNRDYLGAF 154
D+A R L+ RD +S+ A + L RT P + R + T N Y AF
Sbjct 149 DVALRGLEARERD--LSADQAARVDRLVRTVRTEENPNYDGAALARRIILTENEHYRSAF 206
Query 155 VKRVSNPVAGHTTWTDREAAAWREAAAV-AAEQRAMGL-VDTAGGFLIPAALDPAILLSG 212
+ +S P H ++ E A R +E RAMG AGG+ +P +DP+++++
Sbjct 207 RRVMSTP---HPLLSEPEIQALRAFQDFEKSELRAMGEGTGAAGGYGVPVFIDPSVIMTA 263
Query 213 DGSTNPIRQVARVVQTTSEVWRGVTSEGAEAHWYSEAQEVSDDSPTLAQPAVPSYRGSCW 272
GS N + +VV+ + VW+GV+S G + +E VSDDSPTL QP V + +
Sbjct 264 QGSGNVFLDLCKVVEVNTNVWKGVSSAGVSWSFDAEGATVSDDSPTLDQPVVNVFTARGF 323
Query 273 IPFSLEIEGDAAGFVAEVGRVLADSVEQLQAAAFVSGSGNGEPTGFVSALTG--TADYTV 330
+PFS+E+ D GF +E+ +LA ++L F GSG GEP G V+AL TA+ +
Sbjct 324 VPFSIEVGQDYPGFASEMAELLASGYDELLVDKFTRGSGTGEPQGIVTALDADPTAEVLL 383
Query 331 TGAGTEAVVAADVYALQSALPPRFQSNSAFAANLSTINVLRQAET-ANGALKFPSLHASP 389
AGT A+ ADVY + + LP RF+ S++ + N +RQ T AN L A
Sbjct 384 GTAGTLAL--ADVYNVWAKLPQRFRRRSSWMGAVEINNKIRQLGTAANFHGTTVDLTAGA 441
Query 390 PMLAGKHIWEVSNMDTVDAAVTATNYPLVLGDWKQFIITDRVGSTVELVPHVFG-GNRRP 448
+ W + T T TN +V GD+ ++I R G VELVP +F N RP
Sbjct 442 ADVLMNRQWYETPYMTDLTTTTHTNVAIV-GDFSNYVIARRSGLNVELVPTLFDVTNNRP 500
Query 449 TGQRGFFCWFRVGSDVLVDNAFRVLK 474
TGQRG+F + R+G ++ FR+L
Sbjct 501 TGQRGWFAYARIGGGSANNSGFRLLN 526
>gi|306805297|ref|ZP_07441965.1| hypothetical protein TMHG_04002 [Mycobacterium tuberculosis SUMu008]
gi|308348167|gb|EFP37018.1| hypothetical protein TMHG_04002 [Mycobacterium tuberculosis SUMu008]
Length=65
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/60 (90%), Positives = 55/60 (92%), Gaps = 0/60 (0%)
Query 12 DIKQLSLDETRSAAKQLLDSVEGDLTGDVAQRFQALTRHAEELRAEQRRRGREAEEALRR 71
DIK LSL ETR AAKQLLDSV GDLTG+ AQRFQALTRHAEELRAEQRRRGREAEEALRR
Sbjct 6 DIKNLSLPETRDAAKQLLDSVAGDLTGEAAQRFQALTRHAEELRAEQRRRGREAEEALRR 65
>gi|146277402|ref|YP_001167561.1| HK97 family phage major capsid protein [Rhodobacter sphaeroides
ATCC 17025]
gi|145555643|gb|ABP70256.1| phage major capsid protein, HK97 family [Rhodobacter sphaeroides
ATCC 17025]
Length=385
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 97/305 (32%), Positives = 145/305 (48%), Gaps = 25/305 (8%)
Query 180 AAVAAEQRAMGLV-DTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSE-----VW 233
AA A E +A+ + D GG+L PA + + +P+R VA V QT S
Sbjct 94 AAPADELKALNVSSDPQGGYLAPAEMSTE-FIRDLVEFSPVRAVASVRQTGSPSIIYPAR 152
Query 234 RGVTSEGAEAHWYSEAQEVSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAAGFV-AEVGR 292
G+T+ A W EAQ P Q V + ++ S ++ D+AG AEV
Sbjct 153 TGITN----ARWKGEAQAQEGSEPGFGQAEVVVKEVNTFVDISNQLLADSAGQAEAEVRM 208
Query 293 VLADSVEQLQAAAFVSGSGNGEPTGFVSALTGTADYTVTGAGTEAVVAADVYALQSALPP 352
LA+ Q + AAFVSG G EP GF++ G A +TV+GA + A + L ALP
Sbjct 209 ALAEDFGQKEGAAFVSGDGILEPAGFMTH-AGIA-HTVSGAAA-GITADALVKLLYALPA 265
Query 353 RFQSNSAFAANLSTINVLRQAETANGALKF-PSLHA-SPPMLAGKHIWEVSNMDTVDAAV 410
++ A+A N +T+ +R + +G + PS A P L G+ + E+ +M V+A
Sbjct 266 TYRGRGAWAMNGTTLGAVRLLKDGDGRFLWQPSYQAGQPETLLGRPVVEMVDMPDVEAGA 325
Query 411 TATNYPLVLGDWKQFIITDRVGSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAF 470
+P++ GDW + I DR+ +V + P++ R G RVG VL F
Sbjct 326 ----FPIIYGDWSGYRIVDRIALSVLVNPYI----RATEGITRIHATRRVGGRVLQAAKF 377
Query 471 RVLKV 475
R LK+
Sbjct 378 RKLKI 382
>gi|110634245|ref|YP_674453.1| HK97 family phage major capsid protein [Mesorhizobium sp. BNC1]
gi|110285229|gb|ABG63288.1| phage major capsid protein, HK97 family [Chelativorans sp. BNC1]
Length=389
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 145/300 (49%), Gaps = 17/300 (5%)
Query 183 AAEQRAMGL-VDTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEVWRGVTSEGA 241
A EQRA+ + D AGGFL+P A +L +P+RQ ARV+ R G
Sbjct 97 ADEQRALTVSTDAAGGFLVPDNF-VAEMLRNVVQFSPVRQYARVMNVAGANVRMPKRTGT 155
Query 242 -EAHWYSEAQEVSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAA-GFVAEVGRVLADSVE 299
A W +E + + P + + + +C++ S ++ D+A +E+ A+
Sbjct 156 MTAAWVAETGDRASTQPAYGEVELTPFEAACYVDISNQLLEDSAFNLESELAFDAAEEFG 215
Query 300 QLQAAAFVSGSGNGEPTGFVSALTGTADYTVTGAGTEAVVAAD-VYALQSALPPRFQSNS 358
+L++ AFV+G G G+P G + A TG A A T AD + L L P ++ N+
Sbjct 216 RLESVAFVAGDGTGKPKGIL-ADTGIATVVSGNASTLGTAPADKLIDLLYKLAPAYRRNA 274
Query 359 AFAANLSTINVLRQAETANGALKF-PSL-HASPPMLAGKHIWEVSNMDTVDAAVTATNYP 416
+A N +T+ ++R+ + + G + P + + P + G+ + E+ +M VTA P
Sbjct 275 TWALNSTTLALVRKLKDSQGNFLWQPGIANGQPETILGRPVAEMPDMPD----VTADALP 330
Query 417 LVLGDWKQ-FIITDRVGSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKV 475
+++GD++Q + I DRV V P+ GQ F RVG V+ AF+ LK+
Sbjct 331 ILIGDFQQGYRIVDRVSLAVLRDPYTMASK----GQTRFHMRRRVGGGVVKAEAFKALKI 386
>gi|296444757|ref|ZP_06886720.1| phage major capsid protein, HK97 family [Methylosinus trichosporium
OB3b]
gi|296257705|gb|EFH04769.1| phage major capsid protein, HK97 family [Methylosinus trichosporium
OB3b]
Length=529
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 94/296 (32%), Positives = 139/296 (47%), Gaps = 27/296 (9%)
Query 193 DTAGGFLIPA----ALDPAILLSGDGSTNPIRQVARVVQTTSEVWRGVTSEGA-EAHWYS 247
DTAGG+L PA +D I+ +PIRQ ARV T S GA A W
Sbjct 251 DTAGGYLAPADFSREVDKNIV-----QFSPIRQAARVGMTASGSVIVPRRTGAPTATWTG 305
Query 248 EAQEVSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAA-GFVAEVGRVLADSVEQLQAAAF 306
E + + Q +P +C++ S ++ DAA AEV LA+ +++ AF
Sbjct 306 ETETRPATGSSYGQVEIPIEEAACYVDVSNKLLEDAAVDIAAEVAFDLAEEFGRIEGLAF 365
Query 307 VSGSGNGEPTGFVSALTGTADYTVTGAGTEAVVAAD-VYALQSALPPRFQSNSAFAANLS 365
VSG G +P GF+S A+ + T G +++ AD ++ L L P ++ +AF AN S
Sbjct 366 VSGDGVKKPLGFMS----DANISYTPGGDASLIKADGIFDLYYGLKPFYRQRAAFIANGS 421
Query 366 TINVLRQAETANG-ALKFPSLH-ASPPMLAGKHIWEVSNMDTVDAAVTATNYPLVLGDWK 423
TI +R+ + + G L PSL P L G+ + E +M +T YPL GD+
Sbjct 422 TIAAIRKLKDSQGRYLWEPSLALGQPETLLGRPLIEAVDMPD----ITGNAYPLAFGDFS 477
Query 424 Q-FIITDRVGSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKVQTT 478
+ I DRV ++ P+ +G F RVG V+ A R LK+ T+
Sbjct 478 TGYRIYDRVALSLLRDPYSVA----TSGLTRFHARRRVGGAVVRAEAIRKLKIATS 529
>gi|15843072|ref|NP_338109.1| hypothetical protein MT3573.9 [Mycobacterium tuberculosis CDC1551]
gi|13883417|gb|AAK47923.1| hypothetical protein MT3573.9 [Mycobacterium tuberculosis CDC1551]
Length=68
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/57 (90%), Positives = 52/57 (92%), Gaps = 0/57 (0%)
Query 12 DIKQLSLDETRSAAKQLLDSVEGDLTGDVAQRFQALTRHAEELRAEQRRRGREAEEA 68
DIK LSL ETR AAKQLLDSV GDLTG+ AQRFQALTRHAEELRAEQRRRGREAEEA
Sbjct 6 DIKNLSLPETRDAAKQLLDSVAGDLTGEAAQRFQALTRHAEELRAEQRRRGREAEEA 62
>gi|227875043|ref|ZP_03993188.1| HK97 family phage major capsid protein [Mobiluncus mulieris ATCC
35243]
gi|227844321|gb|EEJ54485.1| HK97 family phage major capsid protein [Mobiluncus mulieris ATCC
35243]
Length=409
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/296 (27%), Positives = 143/296 (49%), Gaps = 22/296 (7%)
Query 192 VDTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEVWR-GVTSEGAEAHWYSEAQ 250
VDT GG+L+P + L+S N +R +A+V+QTTS + V S A W E +
Sbjct 128 VDTEGGYLVPDEFE-RTLISSLEDQNIMRGLAKVIQTTSGDRKIPVVSTHGTAGWLDEGK 186
Query 251 EVSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAAGFV-----AEVGRVLADSVEQLQAAA 305
++ T Q + +++ ++ S E+ D+A V AE R + + E+ A
Sbjct 187 PYTESDETFTQVTLSAFKLGTFLKISEELLNDSAFNVEQYLAAEFARRIGAAEEE----A 242
Query 306 FVSGSGNGEPTGFVSALTGTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAFAANLS 365
F++G G G+PTG +A G TG T+ + A ++ L AL ++ N+ + N S
Sbjct 243 FLTGDGKGKPTGIFTASGGGEKAVTTGKATD-ITADELIDLHYALRGPYRKNAVWLMNDS 301
Query 366 TINVLRQAETANGALKF-PSLHA-SPPMLAGKHIWEVSNMDTVDAAVTATNYPLVLGDWK 423
T+ +R+ + NG + P+L A +P ++ G+ + + + + A + + GD
Sbjct 302 TVKTIRKLKDGNGQYLWQPALTAGTPDLVLGRPVHTSTFVPEIKAGAST----VAFGDLS 357
Query 424 QFIITDRVGSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKVQTTA 479
+ I DR G + + + +F TGQ GF R+ +++ A ++L + +A
Sbjct 358 YYWIADRQGRSFKRLNELFA----TTGQVGFLASQRLDGKLVLPEAVKLLTQKASA 409
>gi|306817330|ref|ZP_07451075.1| HK97 family phage major capsid protein [Mobiluncus mulieris ATCC
35239]
gi|304649771|gb|EFM47051.1| HK97 family phage major capsid protein [Mobiluncus mulieris ATCC
35239]
Length=405
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/296 (27%), Positives = 143/296 (49%), Gaps = 22/296 (7%)
Query 192 VDTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEVWR-GVTSEGAEAHWYSEAQ 250
VDT GG+L+P + L+S N +R +A+V+QTTS + V S A W E +
Sbjct 124 VDTEGGYLVPDEFE-RTLISSLEDQNIMRGLAKVIQTTSGDRKIPVVSTHGTAGWLDEGK 182
Query 251 EVSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAAGFV-----AEVGRVLADSVEQLQAAA 305
++ T Q + +++ ++ S E+ D+A V AE R + + E+ A
Sbjct 183 PYTESDETFTQVTLSAFKLGTFLKISEELLNDSAFNVEQYLAAEFARRIGAAEEE----A 238
Query 306 FVSGSGNGEPTGFVSALTGTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAFAANLS 365
F++G G G+PTG +A G TG T+ + A ++ L AL ++ N+ + N S
Sbjct 239 FLTGDGKGKPTGIFTASGGGEKAVTTGKATD-ITADELIDLHYALRGPYRKNAVWLMNDS 297
Query 366 TINVLRQAETANGALKF-PSLHA-SPPMLAGKHIWEVSNMDTVDAAVTATNYPLVLGDWK 423
T+ +R+ + NG + P+L A +P ++ G+ + + + + A + + GD
Sbjct 298 TVKTIRKLKDGNGQYLWQPALTAGTPDLVLGRPVHTSTFVPEIKAGAST----VAFGDLS 353
Query 424 QFIITDRVGSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKVQTTA 479
+ I DR G + + + +F TGQ GF R+ +++ A ++L + +A
Sbjct 354 YYWIADRQGRSFKRLNELFA----TTGQVGFLASQRLDGKLVLPEAVKLLTQKASA 405
>gi|150391720|ref|YP_001321769.1| HK97 family phage major capsid protein [Alkaliphilus metalliredigens
QYMF]
gi|149951582|gb|ABR50110.1| phage major capsid protein, HK97 family [Alkaliphilus metalliredigens
QYMF]
Length=402
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/287 (27%), Positives = 139/287 (49%), Gaps = 16/287 (5%)
Query 193 DTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEVWR-GVTSEGAEAHWYSEAQE 251
DT GG+L+P + ++ + D N R++A V+ T+S + V + A W E
Sbjct 124 DTEGGYLVPDEFERTLIEALD-EENIFRKLANVISTSSGDRKIPVVASKGTASWIDEEGA 182
Query 252 VSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAAGFVAE--VGRVLADSVEQLQAAAFVSG 309
+ + + Q ++ +Y+ I S E+ D+ F E + R A + + AF +G
Sbjct 183 IPESDDSFGQVSIGAYKLGTMIKVSEELLNDSV-FNLENYIAREFARRIGNKEEDAFFTG 241
Query 310 SGNGEPTGFVSALTGTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAFAANLSTINV 369
G+G+PTG ++A TG A VT A A+ ++ L +L +++ S F N +TI
Sbjct 242 DGSGKPTGILAA-TGGAQIGVTAASATAISIDEILDLFYSLKSPYRNKSVFVMNDATIKA 300
Query 370 LRQAETANGALKF-PSLHA-SPPMLAGKHIWEVSNMDTVDAAVTATNYPLVLGDWKQFII 427
+R+ + G + PSL A +P + + ++ S + T+ A+ + ++ GD+ + +
Sbjct 301 IRKLKDGQGQYIWQPSLQAGTPDTILNRPVYTSSYVPTIAASAKS----IIFGDFGYYWV 356
Query 428 TDRVGSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLK 474
DR G + + ++ TGQ GF RV +++ A +VL+
Sbjct 357 ADRQGRVFKRLNELYAA----TGQVGFVATQRVDGKLILPEAIKVLQ 399
>gi|153955258|ref|YP_001396023.1| Phage major capsid protein [Clostridium kluyveri DSM 555]
gi|219855683|ref|YP_002472805.1| hypothetical protein CKR_2340 [Clostridium kluyveri NBRC 12016]
gi|146348116|gb|EDK34652.1| Phage major capsid protein [Clostridium kluyveri DSM 555]
gi|219569407|dbj|BAH07391.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length=401
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 73/286 (26%), Positives = 136/286 (48%), Gaps = 14/286 (4%)
Query 193 DTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEVWR-GVTSEGAEAHWYSEAQE 251
D+ GG+L+P + L+ N R +A V+ T+S + V + A W E
Sbjct 123 DSEGGYLVPDEFERT-LVEALEEENIFRSLANVINTSSGDRKIPVVATKGTASWVDEEGT 181
Query 252 VSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAA-GFVAEVGRVLADSVEQLQAAAFVSGS 310
+ D + Q ++ +Y+ + I S E+ D+ A + + A + + AF +G
Sbjct 182 IPDSDDSFGQVSIGAYKLATMIKVSEELLNDSVFNLEAYISKEFARRIGNKEEEAFFTGD 241
Query 311 GNGEPTGFVSALTGTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAFAANLSTINVL 370
G+G+PTG +++ TG A VT AG A+ +V L +L +++ + F N +T+ +
Sbjct 242 GSGKPTGILAS-TGGAQIGVTTAGATAITMDEVLDLFYSLKAPYRNKAVFVMNDATVKAI 300
Query 371 RQAETANGALKF-PSLHA-SPPMLAGKHIWEVSNMDTVDAAVTATNYPLVLGDWKQFIIT 428
R+ + G + PSL A +P + + ++ + M T+ AA + + GD+ + +
Sbjct 301 RKLKDGQGQYLWQPSLQAGTPDTILNRPLYTSAYMPTIAAAAKS----IAFGDFSYYWVA 356
Query 429 DRVGSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLK 474
DR G + + ++ TGQ GF RV +++ A +VL+
Sbjct 357 DRQGRVFKRLNELYA----VTGQVGFVATQRVDGKLILPEAIKVLQ 398
>gi|167039899|ref|YP_001662884.1| HK97 family phage major capsid protein [Thermoanaerobacter sp.
X514]
gi|300915364|ref|ZP_07132678.1| phage major capsid protein, HK97 family [Thermoanaerobacter sp.
X561]
gi|307724777|ref|YP_003904528.1| phage major capsid protein, HK97 family [Thermoanaerobacter sp.
X513]
gi|166854139|gb|ABY92548.1| phage major capsid protein, HK97 family [Thermoanaerobacter sp.
X514]
gi|300888640|gb|EFK83788.1| phage major capsid protein, HK97 family [Thermoanaerobacter sp.
X561]
gi|307581838|gb|ADN55237.1| phage major capsid protein, HK97 family [Thermoanaerobacter sp.
X513]
Length=399
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 75/288 (27%), Positives = 139/288 (49%), Gaps = 18/288 (6%)
Query 193 DTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEVWR--GVTSEGAEAHWYSEAQ 250
D+ GG+L+P + ++ + + N R++A+++QT+S + V ++G A W E +
Sbjct 121 DSEGGYLVPDEFERTLVQTLE-EENVFRKLAKIIQTSSGDRKIPVVVTKGT-AAWLDEGE 178
Query 251 EVSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAAGFVAE--VGRVLADSVEQLQAAAFVS 308
E + Q ++ +Y+ I S E+ D+ F E + A + + AF+
Sbjct 179 EFDESDSVFGQTSIGAYKLGTMIKVSDELLNDSV-FDLENYISTEFARRIGAKEEEAFLV 237
Query 309 GSGNGEPTGFVSALTGTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAFAANLSTIN 368
G G+G+PTG +A TG A VT A+ A ++ L +L ++ N+ F N +T+
Sbjct 238 GDGDGKPTGIFNA-TGGAQLGVTAGSATAITADEIIDLVYSLKAPYRKNAVFLMNDATVK 296
Query 369 VLRQAETANGALKF-PSLHA-SPPMLAGKHIWEVSNMDTVDAAVTATNYPLVLGDWKQFI 426
+R+ + G + PSL A +P L + ++ + T++A + GD+ +
Sbjct 297 AIRKLKDGQGQYLWQPSLTAGTPDTLLNRPVYTSAYAPTIEAGAKT----IAFGDFGYYW 352
Query 427 ITDRVGSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLK 474
I DR G + + + +F TGQ GF RV +++ A +VL+
Sbjct 353 IADRQGRSFKRLNELFA----TTGQVGFLASQRVDGKLILPEAIKVLQ 396
>gi|42779481|ref|NP_976728.1| HK97 family phage major capsid protein [Bacillus cereus ATCC
10987]
gi|42735397|gb|AAS39336.1| phage major capsid protein, HK97 family [Bacillus cereus ATCC
10987]
Length=397
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 88/337 (27%), Positives = 158/337 (47%), Gaps = 29/337 (8%)
Query 156 KRVSNPVAGHTTWTDRE-----AAAWREAA------AVAAEQR-AMGL-VDTAGGFLIPA 202
K SNP+ T T E +A +++A V+ E R A+ + D+ GGFL+P
Sbjct 69 KATSNPITNEPTRTGEEKTGRASAEYKKAFWNAMRDNVSYEVRNALKIGTDSEGGFLVPD 128
Query 203 ALDPAILLSGDGSTNPIRQVARVVQTTSEVWR--GVTSEGAEAHWYSEAQEVSDDSPTLA 260
+ L+ N R++A V+ T+S + V S+G+ A W E + + +
Sbjct 129 EFERT-LVEALEEENIFRRLANVITTSSGDRKIPVVASKGS-ASWIDEEGAIPESDDSFG 186
Query 261 QPAVPSYRGSCWIPFSLEIEGDAA-GFVAEVGRVLADSVEQLQAAAFVSGSGNGEPTGFV 319
Q ++ +Y+ + I S E+ D+ + + R A + + AF G G G+PTG +
Sbjct 187 QVSIGAYKLATMIKVSEELLNDSVFNLESYITREFARRIGNKEEEAFFIGDGTGKPTGIL 246
Query 320 SALTGTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAFAANLSTINVLRQAETANGA 379
+A TG VT A A+ +V L +L +++ + F N +TI +R+ + NG
Sbjct 247 NA-TGGGQVGVTAASATAITLDEVLDLFYSLKAPYRNKAVFVMNDATIKAIRKLKDGNGQ 305
Query 380 LKF-PSLHA-SPPMLAGKHIWEVSNMDTVDAAVTATNYPLVLGDWKQFIITDRVGSTVEL 437
+ PS+ A +P + + ++ S + T++A +V GD+ + + DR G +
Sbjct 306 YLWQPSVQAGTPDTILNRPLYTSSYVPTIEAGAKT----MVFGDFSYYWVADRQGRVFKR 361
Query 438 VPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLK 474
+ ++ TGQ GF RV +++ A +VL+
Sbjct 362 LNELYA----VTGQVGFIATQRVDGKLILPEAVKVLQ 394
>gi|340355630|ref|ZP_08678308.1| HK97 family prophage LambdaSa04 [Sporosarcina newyorkensis 2681]
gi|339622188|gb|EGQ26717.1| HK97 family prophage LambdaSa04 [Sporosarcina newyorkensis 2681]
Length=397
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 77/292 (27%), Positives = 139/292 (48%), Gaps = 21/292 (7%)
Query 192 VDTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEVWRGVTSEGAEAHWYSEAQE 251
VDT GG+L+P D L+ G N +R+++ +++T +E + + A W E +
Sbjct 119 VDTDGGYLVPTEYDNR-LIQGLEEENIMRKLSTIIKTGAERKINIAATTPAAAWIDEGGQ 177
Query 252 VSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAA-----GFVAEVGRVLADSVEQLQAAAF 306
++ + Q + +++ + + E+ D + + R LA++ E AF
Sbjct 178 LTFGNAKFDQINLDAHKLHVAVKVTEELLYDNVFNLENYILDKFARALANAEED----AF 233
Query 307 VSGSGNGEPTGFVSALTGTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAFAANLST 366
++G G G+PTG G + VT AG +A+ A +V L +L ++ N+ F N +T
Sbjct 234 LNGDGTGKPTGIFHPTEG-GEIGVTAAGIKAITADEVLDLIYSLKRPYRKNAVFITNDAT 292
Query 367 INVLRQAETANGALKF-PSLHA-SPPMLAGKHIWEVSNMDTVDAAVTATNYPLVLGDWKQ 424
+ +LR+ + NGA + PS A P L G ++ + + T V A N + GD+
Sbjct 293 LALLRKLKDGNGAYIWQPSYQAGEPDTLLGYKVYTSAYVPT----VAAGNPVIAFGDFSY 348
Query 425 FIITDRVGSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKVQ 476
+ I DR + + +F GN G GF RV +++ A ++LK++
Sbjct 349 YNIGDRGSRSFAELKELFAGN----GMVGFVAKERVDGRLILPEAVKILKMK 396
>gi|125974135|ref|YP_001038045.1| HK97 family phage major capsid protein [Clostridium thermocellum
ATCC 27405]
gi|125714360|gb|ABN52852.1| phage major capsid protein, HK97 family [Clostridium thermocellum
ATCC 27405]
Length=400
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/290 (26%), Positives = 138/290 (48%), Gaps = 14/290 (4%)
Query 193 DTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTS-EVWRGVTSEGAEAHWYSEAQE 251
DT GG+L+P + L+ N RQ+A V+ T+S + V + A W E +
Sbjct 121 DTEGGYLVPDDFERT-LVEALEEENIFRQIANVITTSSGDKKIPVVASKGTASWVDEEGQ 179
Query 252 VSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAAGFVAE-VGRVLADSVEQLQAAAFVSGS 310
+ + + AQ ++ +Y+ + I S E+ D+ + + + + A + + AF G
Sbjct 180 IPESDDSFAQVSIGAYKLATMIKVSEELLNDSVFNLEQYIAKEFARRIGAKEEEAFFIGD 239
Query 311 GNGEPTGFVSALTGTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAFAANLSTINVL 370
G+G+PTG + A G + VT A A+ ++ L +L ++ N+ F N STI +
Sbjct 240 GSGKPTGIL-ADNGGGEIGVTAASATAITLDEIMDLFYSLKSPYRRNAVFIMNDSTIKAI 298
Query 371 RQAETANGALKF-PSLHA-SPPMLAGKHIWEVSNMDTVDAAVTATNYPLVLGDWKQFIIT 428
R+ + NG + PS+ A +P + + + + M A+ A +V GD+ + +
Sbjct 299 RKLKDNNGQYLWQPSVTAGTPDTILNRPVKTSAFM----PAIAAGAKTIVFGDFSYYWVA 354
Query 429 DRVGSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKVQTT 478
DR G + + ++ TGQ GF RV +++ A ++L+ ++T
Sbjct 355 DRQGRVFKRLNELYAA----TGQVGFMATQRVDGKLVLSEAVKILQQKST 400
>gi|220930199|ref|YP_002507108.1| phage major capsid protein, HK97 family [Clostridium cellulolyticum
H10]
gi|220000527|gb|ACL77128.1| phage major capsid protein, HK97 family [Clostridium cellulolyticum
H10]
Length=397
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 86/336 (26%), Positives = 154/336 (46%), Gaps = 27/336 (8%)
Query 156 KRVSNPVAGHTTWTDRE-----AAAWREAA------AVAAEQR-AMGL-VDTAGGFLIPA 202
K SNP+ T T E +A +++A V+ E R A+ + D+ GGFL+P
Sbjct 69 KATSNPITNEPTRTGEEKTGLASAEYKKAFWNAMRDNVSYEVRNALKIGTDSEGGFLVPD 128
Query 203 ALDPAILLSGDGSTNPIRQVARVVQTTSEVWR-GVTSEGAEAHWYSEAQEVSDDSPTLAQ 261
+ L+ N R++A V+ T+S + V + A W E + + + Q
Sbjct 129 EFERT-LVEALEEENIFRRLANVITTSSGDRKIPVVASKGNASWIDEEGAIPESDDSFGQ 187
Query 262 PAVPSYRGSCWIPFSLEIEGDAA-GFVAEVGRVLADSVEQLQAAAFVSGSGNGEPTGFVS 320
++ +Y+ + I S E+ D+ + + R A + + AF G G G+PTG ++
Sbjct 188 VSIGAYKLATMIKVSEELLNDSVFNLESYITREFARRIGNKEEEAFFVGDGTGKPTGILN 247
Query 321 ALTGTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAFAANLSTINVLRQAETANGAL 380
A TG VT A A+ +V L +L +++ + F N +TI +R+ + NG
Sbjct 248 A-TGGGQVGVTAASATAITLDEVLDLFYSLKAPYRNKAVFVMNDATIKAIRKLKDGNGQY 306
Query 381 KF-PSLHA-SPPMLAGKHIWEVSNMDTVDAAVTATNYPLVLGDWKQFIITDRVGSTVELV 438
+ PS+ A +P + + ++ S + T +A +V GD+ + + DR G + +
Sbjct 307 LWQPSIQAGTPDTILNRPLYTSSYVPTAEAGAKT----VVFGDFSYYWVADRQGRVFKRL 362
Query 439 PHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLK 474
++ TGQ GF RV +++ A +VL+
Sbjct 363 NELYA----VTGQVGFIATQRVDGKLILPEAVKVLQ 394
>gi|304390287|ref|ZP_07372240.1| HK97 family phage major capsid protein [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|304326043|gb|EFL93288.1| HK97 family phage major capsid protein [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
Length=404
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/290 (27%), Positives = 138/290 (48%), Gaps = 22/290 (7%)
Query 192 VDTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEVWR-GVTSEGAEAHWYSEAQ 250
VDT GG+L+P + L+S N +R +A+V+QTTS + V S A W E +
Sbjct 123 VDTEGGYLVPDEFE-RTLISSLEDQNIMRSLAKVIQTTSGDRKIPVVSTHGTAGWLDEGK 181
Query 251 EVSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAAGFV-----AEVGRVLADSVEQLQAAA 305
++ Q + +++ ++ S E+ DAA V AE R + + E+ A
Sbjct 182 PYTESDEAFTQVTLSAFKLGTFLKISEELLNDAAFNVEQYLAAEFARRIGAAEEE----A 237
Query 306 FVSGSGNGEPTGFVSALTGTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAFAANLS 365
F++G G G+PTG +A TG + VT + A ++ L L ++ N+ + N S
Sbjct 238 FLTGDGKGKPTGIFAA-TGGGEKAVTTGKASDITADELIDLHYGLRAPYRKNAVWLMNDS 296
Query 366 TINVLRQAETANGALKF-PSLHA-SPPMLAGKHIWEVSNMDTVDAAVTATNYPLVLGDWK 423
T+ +R+ + NG + P+L A +P ++ G+ + + + + A + + GD
Sbjct 297 TVKTIRKLKDGNGQYLWQPALTAGTPDLVLGRPVHTSTFVPEIKAGAST----VAFGDLS 352
Query 424 QFIITDRVGSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVL 473
+ I DR G + + + +F TGQ GF R+ +++ A ++L
Sbjct 353 YYWIADRQGRSFKRLNELF----VTTGQVGFLASQRLDGKLVLPEAVKLL 398
>gi|281418278|ref|ZP_06249298.1| phage major capsid protein, HK97 family [Clostridium thermocellum
JW20]
gi|281409680|gb|EFB39938.1| phage major capsid protein, HK97 family [Clostridium thermocellum
JW20]
Length=400
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 74/290 (26%), Positives = 138/290 (48%), Gaps = 14/290 (4%)
Query 193 DTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTS-EVWRGVTSEGAEAHWYSEAQE 251
DT GG+L+P + L+ N RQ+A V+ T+S + V + A W E +
Sbjct 121 DTEGGYLVPDDFERT-LVEALEEENIFRQIANVITTSSGDKKIPVVASKGTASWVDEEGQ 179
Query 252 VSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAAGFVAE-VGRVLADSVEQLQAAAFVSGS 310
+ + + AQ ++ +Y+ + I S E+ D+ + + + + A + + AF G
Sbjct 180 IPESDDSFAQVSIGAYKLATMIKVSEELLNDSVFNLEQYIAKEFARRIGAKEEEAFFIGD 239
Query 311 GNGEPTGFVSALTGTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAFAANLSTINVL 370
G+G+PTG + A G + VT A A+ ++ L +L ++ N+ F N STI +
Sbjct 240 GSGKPTGIL-ADNGGGEIGVTAASATAITLDEIMDLFYSLKSPYRRNAVFIMNDSTIKAI 298
Query 371 RQAETANGALKF-PSLHA-SPPMLAGKHIWEVSNMDTVDAAVTATNYPLVLGDWKQFIIT 428
R+ + NG + PS+ A +P + + + + M A+ A +V GD+ + +
Sbjct 299 RKLKDNNGQYLWQPSVTAGTPDTILNRPVKTSAFM----PAIAAGAKTIVFGDFSYYWVA 354
Query 429 DRVGSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKVQTT 478
DR G + + ++ TGQ GF RV +++ A ++L+ ++T
Sbjct 355 DRQGRIFKRLNELYAA----TGQVGFMATQRVDGKLVLAEAVKILQQKST 400
>gi|192292346|ref|YP_001992951.1| phage major capsid protein, HK97 family [Rhodopseudomonas palustris
TIE-1]
gi|192286095|gb|ACF02476.1| phage major capsid protein, HK97 family [Rhodopseudomonas palustris
TIE-1]
Length=382
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 87/299 (30%), Positives = 133/299 (45%), Gaps = 15/299 (5%)
Query 183 AAEQRAMGL-VDTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQT-TSEVWRGVTSEG 240
A EQ+A+ + D +GG+L P L+ +P+RQ A VV +E+ +
Sbjct 91 ADEQKALTVSTDASGGYLAPEQFGNE-LIKLLRQYSPVRQYANVVSIGAAEIKYPRRTGS 149
Query 241 AEAHWYSEAQEVSDDSPTLAQPAVPSYRGSCWIPFSLEI-EGDAAGFVAEVGRVLADSVE 299
A W E ++ S+ P+ Q + + + S ++ E +A E+ A++
Sbjct 150 TVASWVDETEDRSESEPSFEQITIAPFELATHSDVSTQLLEDNAYNLEGELAADFAETFG 209
Query 300 QLQAAAFVSGSGNGEPTGFVSALTGTADYTVTGAGTEAVVAADVY-ALQSALPPRFQSNS 358
+AAAFV GSG +PTG ++A T T A ADV + ALP N
Sbjct 210 IKEAAAFVKGSGVKQPTGIMTAAGITEVKTGAAATFPTSNPADVLIGMYHALPGVHAQNG 269
Query 359 AFAANLSTINVLRQAETANGALKF--PSLHASPPMLAGKHIWEVSNMDTVDAAVTATNYP 416
+ N +T+ +RQ + NG P +P L G+ I E +MD + A YP
Sbjct 270 VWMMNRTTLGTIRQWKDGNGRYLVLDPISAGAPVTLLGRPIVEAIDMDD----IGANKYP 325
Query 417 LVLGDWKQFIITDRVGSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKV 475
++ GD K + I DRVG +V P+ GQ F RVG+ + + F LKV
Sbjct 326 VLFGDLKGYRIVDRVGLSVLRDPYSLATK----GQVRFHARTRVGAGLTHPDRFIKLKV 380
>gi|256003557|ref|ZP_05428547.1| phage major capsid protein, HK97 family [Clostridium thermocellum
DSM 2360]
gi|255992581|gb|EEU02673.1| phage major capsid protein, HK97 family [Clostridium thermocellum
DSM 2360]
gi|316941378|gb|ADU75412.1| phage major capsid protein, HK97 family [Clostridium thermocellum
DSM 1313]
Length=400
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 73/289 (26%), Positives = 137/289 (48%), Gaps = 14/289 (4%)
Query 193 DTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTS-EVWRGVTSEGAEAHWYSEAQE 251
DT GG+L+P + L+ N RQ+A V+ T+S + V + A W E +
Sbjct 121 DTEGGYLVPDDFERT-LVEALEEENIFRQIANVISTSSGDKKIPVVASKGTASWVDEEGQ 179
Query 252 VSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAAGFVAE-VGRVLADSVEQLQAAAFVSGS 310
+ + + AQ ++ +Y+ + I S E+ D+ + + + + A + + AF G
Sbjct 180 IPESDDSFAQVSIGAYKLATMIKVSEELLNDSVFNLEQYIAKEFARRIGAKEEEAFFIGD 239
Query 311 GNGEPTGFVSALTGTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAFAANLSTINVL 370
G+G+PTG + A G + VT A A+ ++ L +L ++ N+ F N STI +
Sbjct 240 GSGKPTGIL-ADNGGGEIGVTAASATAITLDEIMDLFYSLKSPYRRNAVFIMNDSTIKAI 298
Query 371 RQAETANGALKF-PSLHA-SPPMLAGKHIWEVSNMDTVDAAVTATNYPLVLGDWKQFIIT 428
R+ + NG + PS+ A +P + + + + M A+ A +V GD+ + +
Sbjct 299 RKLKDNNGQYLWQPSVTAGTPDTILNRPVKTSAFM----PAIAAGAKTIVFGDFSYYWVA 354
Query 429 DRVGSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKVQT 477
DR G + + ++ TGQ GF RV +++ A ++L+ ++
Sbjct 355 DRQGRVFKRLNELYAA----TGQVGFMATQRVDGKLVLSEAVKILQQKS 399
>gi|268610678|ref|ZP_06144405.1| HK97 family phage major capsid protein [Ruminococcus flavefaciens
FD-1]
Length=401
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 77/289 (27%), Positives = 133/289 (47%), Gaps = 15/289 (5%)
Query 193 DTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEVWRG--VTSEGAEAHWYSEAQ 250
DT GG+L+P + L+ N RQ+A V++T+S + VTS+G +A W E +
Sbjct 120 DTEGGYLVPDEFERK-LIEALEEENIFRQMATVIKTSSGDRKIPIVTSKG-DAVWMDEEE 177
Query 251 EVSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAA-GFVAEVGRVLADSVEQLQAAAFVSG 309
+ + T Q ++ +Y+ I S E+ D+ + + R A + + AF G
Sbjct 178 QYTLSDDTFGQASLSAYKLGTAIKISEELLNDSVFDLPSYIAREFARRIGAKEEEAFFIG 237
Query 310 SGNGEPTGFVSALTGTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAFAANLSTINV 369
+G G+PTG +A G D T + + DV L +L ++ + + N ST+
Sbjct 238 NGTGKPTGIFNATGGAQDGATTAGAS--ITFDDVMELFYSLRSPYRKKAVWVLNDSTVKA 295
Query 370 LRQAETANGALKF-PSLHASPPMLAGKHIWEVSNMDTVDAAVTATNYPLVLGDWKQFIIT 428
LR+ + NG + PS+ A P ++ S + + A + GD+ + I
Sbjct 296 LRKLKDGNGNYIWQPSVAAGVPDTILNRPYKTS---SYVPEIKAGAKCMAFGDFSYYWIA 352
Query 429 DRVGSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKVQT 477
DR G T + + +F TGQ GF R+ +++ A + LKV++
Sbjct 353 DRSGRTFKRLNELFA----MTGQVGFLAMERLDGKLILPEAIKTLKVKS 397
Lambda K H
0.316 0.130 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1022124403104
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40