BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2652c Length=208 Score E Sequences producing significant alignments: (Bits) Value gi|15609789|ref|NP_217168.1| phiRv2 prophage protein [Mycobacter... 412 2e-113 gi|308374650|ref|ZP_07436858.2| phiRv2 phage protein [Mycobacter... 328 2e-88 gi|308232202|ref|ZP_07415271.2| phiRv2 phage protein [Mycobacter... 327 7e-88 gi|15842192|ref|NP_337229.1| hypothetical protein MT2729 [Mycoba... 323 1e-86 gi|167967168|ref|ZP_02549445.1| putative phiRv2 prophage protein... 219 2e-55 gi|15608716|ref|NP_216094.1| phiRv1 phage protein [Mycobacterium... 125 4e-27 gi|308372555|ref|ZP_07429053.2| phage terminase, small subunit, ... 125 5e-27 gi|54022002|ref|YP_116244.1| hypothetical protein nfa380 [Nocard... 115 6e-24 gi|290960847|ref|YP_003492029.1| phage terminase small subunit [... 110 2e-22 gi|295839098|ref|ZP_06826031.1| P27 family phage terminase, smal... 107 1e-21 gi|289569618|ref|ZP_06449845.1| LOW QUALITY PROTEIN: phiRv1 phag... 102 5e-20 gi|93709|pir||S21428 hypothetical protein (cos site) - actinopha... 80.1 2e-13 gi|297583102|ref|YP_003698882.1| P27 family phage terminase smal... 69.7 2e-10 gi|341576782|gb|EGS27190.1| prophage LambdaSa04, P27 family term... 69.7 3e-10 gi|342902284|ref|ZP_08724097.1| prophage LambdaSa04, P27 family ... 69.3 4e-10 gi|331090233|ref|ZP_08339121.1| hypothetical protein HMPREF1025_... 68.6 6e-10 gi|325690439|gb|EGD32442.1| terminase [Streptococcus sanguinis S... 67.8 9e-10 gi|339452903|gb|EGP65522.1| phage terminase, small subunit, P27 ... 67.8 1e-09 gi|325687747|gb|EGD29768.1| phage terminase small subunit [Strep... 67.8 1e-09 gi|327461142|gb|EGF07475.1| terminase [Streptococcus sanguinis S... 67.4 1e-09 gi|237803719|ref|ZP_04591304.1| P27 family phage terminase small... 67.4 1e-09 gi|77412063|ref|ZP_00788389.1| phage terminase, small subunit, p... 66.6 2e-09 gi|332522792|ref|ZP_08399044.1| phage terminase, small subunit, ... 66.2 3e-09 gi|343525830|ref|ZP_08762783.1| phage terminase, small subunit, ... 65.5 4e-09 gi|341577218|gb|EGS27626.1| prophage LambdaSa04, P27 family term... 65.5 5e-09 gi|319757812|gb|ADV69754.1| phage terminase, small subunit, puta... 65.1 6e-09 gi|289569614|ref|ZP_06449841.1| predicted protein [Mycobacterium... 65.1 6e-09 gi|288916276|ref|ZP_06410655.1| phage terminase, small subunit, ... 64.7 8e-09 gi|336234247|ref|YP_004586863.1| phage terminase, small subunit,... 64.7 8e-09 gi|125974227|ref|YP_001038137.1| P27 family phage terminase smal... 64.7 8e-09 gi|298486629|ref|ZP_07004687.1| Small terminase subunit [Pseudom... 64.7 9e-09 gi|342903080|ref|ZP_08724893.1| prophage LambdaSa04, P27 family ... 64.3 1e-08 gi|302188728|ref|ZP_07265401.1| P27 family phage terminase small... 64.3 1e-08 gi|330989641|gb|EGH87744.1| P27 family phage terminase small sub... 63.9 1e-08 gi|330954013|gb|EGH54273.1| P27 family phage terminase small sub... 63.9 1e-08 gi|83647247|ref|YP_435682.1| P27 family phage terminase small su... 63.9 2e-08 gi|227522323|ref|ZP_03952372.1| conserved hypothetical protein [... 63.5 2e-08 gi|50914488|ref|YP_060460.1| Phage terminase small subunit [Stre... 63.5 2e-08 gi|302873678|ref|YP_003842311.1| phage terminase, small subunit,... 63.5 2e-08 gi|170732638|ref|YP_001764585.1| P27 family phage terminase smal... 62.8 3e-08 gi|332800335|ref|YP_004461834.1| phage terminase, small subunit ... 62.4 4e-08 gi|296051581|ref|YP_003632255.1| phage terminase, small subunit,... 62.4 4e-08 gi|331085739|ref|ZP_08334822.1| hypothetical protein HMPREF0987_... 61.6 6e-08 gi|336435244|ref|ZP_08614961.1| hypothetical protein HMPREF0988_... 61.6 8e-08 gi|300853552|ref|YP_003778536.1| putative phage terminasesmall s... 61.2 1e-07 gi|120601919|ref|YP_966319.1| P27 family phage terminase small s... 60.1 2e-07 gi|229156197|ref|ZP_04284294.1| Phage Terminase Small Subunit [B... 60.1 2e-07 gi|296159096|ref|ZP_06841923.1| phage terminase, small subunit, ... 59.3 3e-07 gi|261418100|ref|YP_003251782.1| phage terminase, small subunit,... 58.9 5e-07 gi|218234873|ref|YP_002367329.1| phage terminase, small subunit,... 58.9 5e-07 >gi|15609789|ref|NP_217168.1| phiRv2 prophage protein [Mycobacterium tuberculosis H37Rv] gi|148662494|ref|YP_001284017.1| putative phiRv2 prophage protein [Mycobacterium tuberculosis H37Ra] gi|253798266|ref|YP_003031267.1| phiRv2 phage protein [Mycobacterium tuberculosis KZN 1435] 26 more sequence titles Length=208 Score = 412 bits (1058), Expect = 2e-113, Method: Compositional matrix adjust. Identities = 207/208 (99%), Positives = 208/208 (100%), Gaps = 0/208 (0%) Query 1 LPSPATARPDTATVGERVRAQVLWGVFWHHGIRDPKPGKRRVVLKMGRRGPAPAPAQLKL 60 +PSPATARPDTATVGERVRAQVLWGVFWHHGIRDPKPGKRRVVLKMGRRGPAPAPAQLKL Sbjct 1 MPSPATARPDTATVGERVRAQVLWGVFWHHGIRDPKPGKRRVVLKMGRRGPAPAPAQLKL 60 Query 61 LGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVPELAALNLLKESDLGV 120 LGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVPELAALNLLKESDLGV Sbjct 61 LGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVPELAALNLLKESDLGV 120 Query 121 LTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAATRDVLVLARELGCTP 180 LTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAATRDVLVLARELGCTP Sbjct 121 LTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAATRDVLVLARELGCTP 180 Query 181 SAEANLAAVLAAAGDPDDDEFNPFAPDR 208 SAEANLAAVLAAAGDPDDDEFNPFAPDR Sbjct 181 SAEANLAAVLAAAGDPDDDEFNPFAPDR 208 >gi|308374650|ref|ZP_07436858.2| phiRv2 phage protein [Mycobacterium tuberculosis SUMu006] gi|308375527|ref|ZP_07444213.2| phiRv2 phage protein [Mycobacterium tuberculosis SUMu007] gi|308341199|gb|EFP30050.1| phiRv2 phage protein [Mycobacterium tuberculosis SUMu006] gi|308346039|gb|EFP34890.1| phiRv2 phage protein [Mycobacterium tuberculosis SUMu007] gi|323718764|gb|EGB27923.1| phiRv2 phage protein [Mycobacterium tuberculosis CDC1551A] Length=167 Score = 328 bits (842), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 166/167 (99%), Positives = 167/167 (100%), Gaps = 0/167 (0%) Query 42 VVLKMGRRGPAPAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWG 101 +VLKMGRRGPAPAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWG Sbjct 1 MVLKMGRRGPAPAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWG 60 Query 102 RVVPELAALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAA 161 RVVPELAALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAA Sbjct 61 RVVPELAALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAA 120 Query 162 ARAATRDVLVLARELGCTPSAEANLAAVLAAAGDPDDDEFNPFAPDR 208 ARAATRDVLVLARELGCTPSAEANLAAVLAAAGDPDDDEFNPFAPDR Sbjct 121 ARAATRDVLVLARELGCTPSAEANLAAVLAAAGDPDDDEFNPFAPDR 167 >gi|308232202|ref|ZP_07415271.2| phiRv2 phage protein [Mycobacterium tuberculosis SUMu001] gi|308369815|ref|ZP_07419172.2| phiRv2 phage protein [Mycobacterium tuberculosis SUMu002] gi|308372358|ref|ZP_07428379.2| phiRv2 phage protein [Mycobacterium tuberculosis SUMu004] 13 more sequence titles Length=166 Score = 327 bits (838), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 165/166 (99%), Positives = 166/166 (100%), Gaps = 0/166 (0%) Query 43 VLKMGRRGPAPAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGR 102 +LKMGRRGPAPAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGR Sbjct 1 MLKMGRRGPAPAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGR 60 Query 103 VVPELAALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAA 162 VVPELAALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAA Sbjct 61 VVPELAALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAA 120 Query 163 RAATRDVLVLARELGCTPSAEANLAAVLAAAGDPDDDEFNPFAPDR 208 RAATRDVLVLARELGCTPSAEANLAAVLAAAGDPDDDEFNPFAPDR Sbjct 121 RAATRDVLVLARELGCTPSAEANLAAVLAAAGDPDDDEFNPFAPDR 166 >gi|15842192|ref|NP_337229.1| hypothetical protein MT2729 [Mycobacterium tuberculosis CDC1551] gi|148823843|ref|YP_001288597.1| phiRv2 prophage protein [Mycobacterium tuberculosis F11] gi|254365317|ref|ZP_04981362.1| hypothetical phiRv2 prophage protein [Mycobacterium tuberculosis str. Haarlem] 9 more sequence titles Length=163 Score = 323 bits (827), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 163/163 (100%), Positives = 163/163 (100%), Gaps = 0/163 (0%) Query 46 MGRRGPAPAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVP 105 MGRRGPAPAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVP Sbjct 1 MGRRGPAPAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVP 60 Query 106 ELAALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAA 165 ELAALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAA Sbjct 61 ELAALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAA 120 Query 166 TRDVLVLARELGCTPSAEANLAAVLAAAGDPDDDEFNPFAPDR 208 TRDVLVLARELGCTPSAEANLAAVLAAAGDPDDDEFNPFAPDR Sbjct 121 TRDVLVLARELGCTPSAEANLAAVLAAAGDPDDDEFNPFAPDR 163 >gi|167967168|ref|ZP_02549445.1| putative phiRv2 prophage protein [Mycobacterium tuberculosis H37Ra] gi|254551706|ref|ZP_05142153.1| phiRv2 phage protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|294994253|ref|ZP_06799944.1| phiRv2 phage protein [Mycobacterium tuberculosis 210] gi|297635263|ref|ZP_06953043.1| phiRv2 phage protein [Mycobacterium tuberculosis KZN 4207] gi|297732259|ref|ZP_06961377.1| phiRv2 phage protein [Mycobacterium tuberculosis KZN R506] gi|313659592|ref|ZP_07816472.1| phiRv2 phage protein [Mycobacterium tuberculosis KZN V2475] Length=110 Score = 219 bits (558), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 110/110 (100%), Positives = 110/110 (100%), Gaps = 0/110 (0%) Query 99 MWGRVVPELAALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPA 158 MWGRVVPELAALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPA Sbjct 1 MWGRVVPELAALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPA 60 Query 159 VAAARAATRDVLVLARELGCTPSAEANLAAVLAAAGDPDDDEFNPFAPDR 208 VAAARAATRDVLVLARELGCTPSAEANLAAVLAAAGDPDDDEFNPFAPDR Sbjct 61 VAAARAATRDVLVLARELGCTPSAEANLAAVLAAAGDPDDDEFNPFAPDR 110 >gi|15608716|ref|NP_216094.1| phiRv1 phage protein [Mycobacterium tuberculosis H37Rv] gi|15843070|ref|NP_338107.1| hypothetical protein MT3573.7 [Mycobacterium tuberculosis CDC1551] gi|31792764|ref|NP_855257.1| phiRv1 phage protein [Mycobacterium bovis AF2122/97] 33 more sequence titles Length=156 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 75/156 (49%), Positives = 91/156 (59%), Gaps = 4/156 (2%) Query 53 PAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVPELAALNL 112 P PA+LKL+ GRSPGRDSGGR+V F R AP+ PDWL A W RV P L L+L Sbjct 5 PKPARLKLVEGRSPGRDSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVAPTLERLDL 64 Query 113 LKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAATRDVLVL 172 LK D +L+++C W + AV R +G T+ +S V +PAV A A +L L Sbjct 65 LKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARMHLLRL 124 Query 173 ARELGCTPSAEANLAAVLAAAGDPDDDEFNPFAPDR 208 A E G TP+AE LA A GD D D NPFAPDR Sbjct 125 ASEFGLTPAAEQRLA---VAPGD-DGDGLNPFAPDR 156 >gi|308372555|ref|ZP_07429053.2| phage terminase, small subunit, P27 family [Mycobacterium tuberculosis SUMu004] gi|308373750|ref|ZP_07433562.2| phage terminase, small subunit, P27 family [Mycobacterium tuberculosis SUMu005] gi|308376128|ref|ZP_07446148.2| phage terminase, small subunit, P27 family [Mycobacterium tuberculosis SUMu007] gi|308378977|ref|ZP_07484533.2| phage terminase, small subunit, P27 family [Mycobacterium tuberculosis SUMu010] gi|308332839|gb|EFP21690.1| phage terminase, small subunit, P27 family [Mycobacterium tuberculosis SUMu004] gi|308336471|gb|EFP25322.1| phage terminase, small subunit, P27 family [Mycobacterium tuberculosis SUMu005] gi|308344234|gb|EFP33085.1| phage terminase, small subunit, P27 family [Mycobacterium tuberculosis SUMu007] gi|308358727|gb|EFP47578.1| phage terminase, small subunit, P27 family [Mycobacterium tuberculosis SUMu010] Length=160 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 75/156 (49%), Positives = 91/156 (59%), Gaps = 4/156 (2%) Query 53 PAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVPELAALNL 112 P PA+LKL+ GRSPGRDSGGR+V F R AP+ PDWL A W RV P L L+L Sbjct 9 PKPARLKLVEGRSPGRDSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVAPTLERLDL 68 Query 113 LKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAATRDVLVL 172 LK D +L+++C W + AV R +G T+ +S V +PAV A A +L L Sbjct 69 LKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARMHLLRL 128 Query 173 ARELGCTPSAEANLAAVLAAAGDPDDDEFNPFAPDR 208 A E G TP+AE LA A GD D D NPFAPDR Sbjct 129 ASEFGLTPAAEQRLA---VAPGD-DGDGLNPFAPDR 160 >gi|54022002|ref|YP_116244.1| hypothetical protein nfa380 [Nocardia farcinica IFM 10152] gi|54013510|dbj|BAD54880.1| putative phage terminase small subunit [Nocardia farcinica IFM 10152] Length=162 Score = 115 bits (287), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 69/162 (43%), Positives = 86/162 (54%), Gaps = 9/162 (5%) Query 50 GPAPAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVPELAA 109 G APA L+L+GGRS GRDSGGR V P F R+ P+ P WL AK W RVVP L+ Sbjct 2 GRTAAPAALRLIGGRSEGRDSGGRPVEQPPEFRRIPPKPPTWLSREAKAEWKRVVPGLSR 61 Query 110 LNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATN-------ARSRRVTVHPAVAAA 162 L LLKE D L +C W + A+ R+ G N SRR +PA+ A Sbjct 62 LELLKEEDRASLAVYCETWATYVAALADVRKNGLTCENVTIYKDGTESRRTVKNPALVVA 121 Query 163 RAATRDVLVLARELGCTPSAEANLAAVLAAAGDPDDDEFNPF 204 A + +A+E G TP+AE LA + +AG DD NPF Sbjct 122 ETAAAQLRGMAQEFGLTPAAEGKLAHL--SAGRGSDDANNPF 161 >gi|290960847|ref|YP_003492029.1| phage terminase small subunit [Streptomyces scabiei 87.22] gi|260650373|emb|CBG73489.1| putative phage terminase small subunit [Streptomyces scabiei 87.22] Length=159 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 63/157 (41%), Positives = 87/157 (56%), Gaps = 10/157 (6%) Query 55 PAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVPELAALNLLK 114 PA LKLL GR+ GRDSGGR+V P AF R+ P P WL P AK W RV P L+ L+LLK Sbjct 7 PAALKLLTGRAEGRDSGGRKVNPGPAFRRIPPNPPTWLSPEAKAEWRRVAPGLSRLDLLK 66 Query 115 ESDLGVLTSFCVAWDQLMQAVTAYREQGFIATN------ARSRRVTVHPAVAAARAATRD 168 E D +L+++C W ++A +QG AR + +P+VA AR A R+ Sbjct 67 EEDRAMLSAYCETWSVFVRATRDVTKQGLTVMQVTYRGEARIEKPVANPSVAVARNAGRE 126 Query 169 VLVLARELGCTPSAEANLAAVLAAAGDPDDDEFNPFA 205 + A + G +P+ E L+ D +++ NPFA Sbjct 127 LRGFAAQFGLSPATE----QALSRGADDGNEDDNPFA 159 >gi|295839098|ref|ZP_06826031.1| P27 family phage terminase, small subunit [Streptomyces sp. SPB74] gi|197695547|gb|EDY42480.1| P27 family phage terminase, small subunit [Streptomyces sp. SPB74] Length=152 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 66/150 (44%), Positives = 84/150 (56%), Gaps = 6/150 (4%) Query 55 PAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVPELAALNLLK 114 PA L+L+ GR+PG+DS GR V AF+R++PE P+WL A W RVVP LA L+LLK Sbjct 8 PAALRLIKGRAPGKDSAGREVKAGPAFKRLSPEAPEWLSEEAAAEWARVVPGLARLDLLK 67 Query 115 ESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAATRDVLVLAR 174 D L ++C AW A A + +G T + + HPAV ARAA R+V A Sbjct 68 PEDRAALAAYCEAWASFRVATEAVQREGL--TIEAKQGLLPHPAVGMARAAGREVRAWAA 125 Query 175 ELGCTPSAEANLAAVLAAAGDPDDDEFNPF 204 G TPS E LA + +PD D NPF Sbjct 126 HFGLTPSTEQALA--RGSENEPDPD--NPF 151 >gi|289569618|ref|ZP_06449845.1| LOW QUALITY PROTEIN: phiRv1 phage protein [Mycobacterium tuberculosis T17] gi|289543372|gb|EFD47020.1| LOW QUALITY PROTEIN: phiRv1 phage protein [Mycobacterium tuberculosis T17] Length=132 Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 58/128 (46%), Positives = 73/128 (58%), Gaps = 0/128 (0%) Query 53 PAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVPELAALNL 112 P PA+LKL+ GRSPGRDSGGR+V F R AP+ PDWL A W RV P L L+L Sbjct 5 PKPARLKLVEGRSPGRDSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVAPTLERLDL 64 Query 113 LKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAATRDVLVL 172 LK +L+++C W + AV R +G T+ +S V +PAV A A +L L Sbjct 65 LKPEVRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARMHLLRL 124 Query 173 ARELGCTP 180 A E G TP Sbjct 125 ASEFGLTP 132 >gi|93709|pir||S21428 hypothetical protein (cos site) - actinophage RP3 gi|14765|emb|CAA46524.1| unnamed protein product [Actinophage RP3] Length=210 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 44/99 (45%), Positives = 60/99 (61%), Gaps = 2/99 (2%) Query 61 LGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVPELAALNLLKESDLGV 120 + GRSPGRDSGGR+V P AF+RV P+ P WL A W RV+PEL+ L+L+KE D Sbjct 106 ITGRSPGRDSGGRKVEPGPAFKRVPPKPPTWLSREAAAEWKRVLPELSRLDLVKEQDRTA 165 Query 121 LTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAV 159 L ++ AW + A +E+G + AR ++ HP V Sbjct 166 LVAYWEAWATFVSATRVVQEEGLV-IEARQGKL-AHPCV 202 >gi|297583102|ref|YP_003698882.1| P27 family phage terminase small subunit [Bacillus selenitireducens MLS10] gi|297585277|ref|YP_003701057.1| P27 family phage terminase small subunit [Bacillus selenitireducens MLS10] gi|297141559|gb|ADH98316.1| phage terminase, small subunit, , P27 family [Bacillus selenitireducens MLS10] gi|297143734|gb|ADI00492.1| phage terminase, small subunit, , P27 family [Bacillus selenitireducens MLS10] Length=160 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/143 (31%), Positives = 64/143 (45%), Gaps = 5/143 (3%) Query 46 MGRRGPAPAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVP 105 M +RG P P LK L G RD P E+ AP CP WL P AK W R+V Sbjct 1 MTQRGRKPKPTALKALEGNPGKRDLNPHEPKP----EKKAPRCPSWLEPEAKKEWRRMVK 56 Query 106 ELAALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAA 165 +L L +L E D+ +C A+ + +A + G I V P V+ A++ Sbjct 57 QLEQLGILTEVDMAAFAGYCQAYARWKEAEEFITKHGTIVKTPSGYWQQV-PQVSIAQSY 115 Query 166 TRDVLVLARELGCTPSAEANLAA 188 + + + G TPS+ + + A Sbjct 116 LKIMNRFCEQFGLTPSSRSRITA 138 >gi|341576782|gb|EGS27190.1| prophage LambdaSa04, P27 family terminase small subunit [Streptococcus agalactiae FSL S3-026] Length=157 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/155 (31%), Positives = 67/155 (44%), Gaps = 5/155 (3%) Query 46 MGRRGPAPAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVP 105 M RG P P LK+L G R V P ++ AP CP WL AK W R+ Sbjct 1 MAVRGRKPKPTNLKILEGNPGKRPLPSNEVKP----KQKAPRCPQWLEDDAKKEWKRMGK 56 Query 106 ELAALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAA 165 L + LL E D+ +C A+ + +A + G I V P V+ ++ Sbjct 57 ILEQMGLLTEMDMTAFAGYCQAYARWKEAEEFLSKHGSIVKTPNGYLQQV-PQVSISQTN 115 Query 166 TRDVLVLARELGCTPSAEANLAAVLAAAGDPDDDE 200 + +L + G TPSA LA + A G+ D+ E Sbjct 116 LKIMLKFCEQFGLTPSARNRLATMDAEVGNGDEME 150 >gi|342902284|ref|ZP_08724097.1| prophage LambdaSa04, P27 family terminase small subunit [Streptococcus urinalis 2285-97] Length=157 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 47/155 (31%), Positives = 67/155 (44%), Gaps = 5/155 (3%) Query 46 MGRRGPAPAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVP 105 M RG P P LK+L G R V P ++ AP CP WL AK W R+ Sbjct 1 MAVRGRKPKPTNLKILEGNPGKRPLPSNEVKP----KQKAPRCPQWLEDDAKKEWKRMGK 56 Query 106 ELAALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAA 165 L + LL E D+ +C A+ + +A + G I V P V+ ++ Sbjct 57 ILEQMGLLTEMDMTAFAGYCQAYARWKEAEEFLSKHGSIIKTPNGYLQQV-PQVSISQTN 115 Query 166 TRDVLVLARELGCTPSAEANLAAVLAAAGDPDDDE 200 + +L + G TPSA LA + A G+ D+ E Sbjct 116 LKIMLKFCEQFGLTPSARNRLATMDAEVGNGDEME 150 >gi|331090233|ref|ZP_08339121.1| hypothetical protein HMPREF1025_02704 [Lachnospiraceae bacterium 3_1_46FAA] gi|330402179|gb|EGG81751.1| hypothetical protein HMPREF1025_02704 [Lachnospiraceae bacterium 3_1_46FAA] Length=159 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 46/156 (30%), Positives = 70/156 (45%), Gaps = 5/156 (3%) Query 46 MGRRGPAPAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVP 105 M +RG P P +K+L G +PG+ S P E+ AP CP WL AK W R+ Sbjct 1 MAQRGRKPKPTAVKVLEG-NPGKRSLNTAEPKP---EKKAPRCPSWLEDEAKKEWKRMSK 56 Query 106 ELAALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAA 165 +L L +L E D+ +C A+ + +A + G I V P V+ A+ Sbjct 57 QLEQLGILTEIDMAAFAGYCQAYARWKEAEEFITQHGTIVKTPSGYWQQV-PQVSIAQTY 115 Query 166 TRDVLVLARELGCTPSAEANLAAVLAAAGDPDDDEF 201 + + + G TPSA + + A A + D+ E Sbjct 116 LKIMNKFCEQFGLTPSARSRIVADTAEDKESDEMEL 151 >gi|325690439|gb|EGD32442.1| terminase [Streptococcus sanguinis SK115] Length=165 Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 45/155 (30%), Positives = 70/155 (46%), Gaps = 5/155 (3%) Query 46 MGRRGPAPAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVP 105 M ++G P P LK+L G +PG+ + P ++ AP CP WL AK W R+ Sbjct 9 MAQKGRKPKPTSLKILEG-NPGKRPLPKNEIQP---KKKAPRCPSWLEEDAKKEWKRIGK 64 Query 106 ELAALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAA 165 L L LL + D+ +C A+ + +A + G I V P V+ ++ Sbjct 65 ILEGLGLLTDMDMMAFAGYCQAYARWKEAEEFLSKHGSIIKTPNGYLQQV-PQVSISQTN 123 Query 166 TRDVLVLARELGCTPSAEANLAAVLAAAGDPDDDE 200 + +L + G TPSA LA++ G D+ E Sbjct 124 LKIMLKFCEQFGLTPSARTRLASMDTEVGSGDEME 158 >gi|339452903|gb|EGP65522.1| phage terminase, small subunit, P27 family [Streptococcus mitis SK1073] gi|343391873|gb|EGV04446.1| phage terminase, small subunit, P27 family [Streptococcus infantis SK970] Length=157 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/155 (30%), Positives = 67/155 (44%), Gaps = 5/155 (3%) Query 46 MGRRGPAPAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVP 105 M RG P P LK+L G R V P ++ AP CP WL AK W R+ Sbjct 1 MAIRGRKPKPTNLKVLEGNPGKRPLPTNEVKP----QKKAPRCPQWLEEDAKREWKRMGK 56 Query 106 ELAALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAA 165 L + LL E D+ +C A+ + +A + G I V P V+ ++ Sbjct 57 ILEQMGLLTEMDMTAFAGYCQAYARWKEAEEFLSKHGSILKTPNGYLQQV-PQVSISQTN 115 Query 166 TRDVLVLARELGCTPSAEANLAAVLAAAGDPDDDE 200 + +L + G TPSA LA + + G+ D+ E Sbjct 116 LKIMLKFCEQFGLTPSARNRLATMDSEVGNGDEME 150 >gi|325687747|gb|EGD29768.1| phage terminase small subunit [Streptococcus sanguinis SK72] Length=165 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/157 (29%), Positives = 69/157 (44%), Gaps = 9/157 (5%) Query 46 MGRRGPAPAPAQLKLLGGRSPGRDSGGRRVTPPAAFE--RVAPECPDWLPPGAKDMWGRV 103 M ++G P P LK+L G G+R P + + AP CP WL AK W R+ Sbjct 9 MAQKGRKPKPTSLKILEGNP------GKRPLPKNEIQPKKKAPRCPSWLEEDAKKEWKRM 62 Query 104 VPELAALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAAR 163 L L LL + D+ +C A+ + +A + G I V P V+ ++ Sbjct 63 GKILEGLGLLTDMDMTAFAGYCQAYARWKEAEEFLSKHGSIIKTPNGYLQQV-PQVSISQ 121 Query 164 AATRDVLVLARELGCTPSAEANLAAVLAAAGDPDDDE 200 + +L + G TPSA LA++ + G D+ E Sbjct 122 TNLKIMLKFCEQFGLTPSARTRLASMDSEVGSGDEME 158 >gi|327461142|gb|EGF07475.1| terminase [Streptococcus sanguinis SK1057] Length=165 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/155 (30%), Positives = 70/155 (46%), Gaps = 5/155 (3%) Query 46 MGRRGPAPAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVP 105 M ++G P P LK+L G +PG+ + P ++ AP CP WL AK W R+ Sbjct 9 MAQKGRKPKPTSLKILEG-NPGKRPLPKNEIQP---KKKAPRCPSWLEEDAKKEWKRMGK 64 Query 106 ELAALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAA 165 L L LL + D+ +C A+ + +A + G I V P V+ ++ Sbjct 65 VLEGLGLLTDMDMMAFAGYCQAYARWKEAEEFLSKHGSIIKTPNGYLQQV-PQVSISQTN 123 Query 166 TRDVLVLARELGCTPSAEANLAAVLAAAGDPDDDE 200 + +L + G TPSA LA++ G D+ E Sbjct 124 LKIMLKFCEQFGLTPSARTRLASMDTEVGSGDEME 158 >gi|237803719|ref|ZP_04591304.1| P27 family phage terminase small subunit [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025701|gb|EGI05757.1| P27 family phage terminase small subunit [Pseudomonas syringae pv. oryzae str. 1_6] Length=161 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/157 (31%), Positives = 73/157 (47%), Gaps = 10/157 (6%) Query 49 RGPAPAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVPELA 108 RG P P K L G +PG+ + + PA + + P+WL A MW +VPEL Sbjct 10 RGRKPKPTAKKALAG-NPGKRALNK--AEPAFSKITNVDPPEWLSDRASQMWKMIVPELL 66 Query 109 ALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAATRD 168 N++ +DL + +FCVA+D A + R+ G + T A + +PA+ AA R Sbjct 67 RENVVAITDLHNVEAFCVAYDNWRMAQESVRQHGIVVTGATGGPMK-NPALTAANETMRQ 125 Query 169 VLVLARELGCTPSAEANLAAVLAAAGDPDDDEFNPFA 205 ++ LG P++ L G + E N FA Sbjct 126 MVTFGSMLGLDPASRTRL------IGGNKEKETNEFA 156 >gi|77412063|ref|ZP_00788389.1| phage terminase, small subunit, putative [Streptococcus agalactiae CJB111] gi|77161868|gb|EAO72853.1| phage terminase, small subunit, putative [Streptococcus agalactiae CJB111] Length=157 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/155 (30%), Positives = 66/155 (43%), Gaps = 5/155 (3%) Query 46 MGRRGPAPAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVP 105 M RG P P LK+L G R V P ++ AP CP WL AK W R+ Sbjct 1 MAVRGRKPKPTNLKILEGNPGKRPLPTNEVKP----KQKAPRCPQWLEDDAKKEWKRMGK 56 Query 106 ELAALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAA 165 L + +L E D+ +C A+ + +A + G I V P V+ ++ Sbjct 57 ILEQIGILTEMDMTAFAGYCQAYARWKEAEEFLSKHGSIIKTPNGYLQQV-PQVSISQTN 115 Query 166 TRDVLVLARELGCTPSAEANLAAVLAAAGDPDDDE 200 + +L + G TPSA LA + A G D+ E Sbjct 116 LKIMLKFCEQFGLTPSARNRLATMDAEVGTGDEME 150 >gi|332522792|ref|ZP_08399044.1| phage terminase, small subunit, P27 family [Streptococcus porcinus str. Jelinkova 176] gi|332314056|gb|EGJ27041.1| phage terminase, small subunit, P27 family [Streptococcus porcinus str. Jelinkova 176] Length=165 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 45/152 (30%), Positives = 65/152 (43%), Gaps = 5/152 (3%) Query 49 RGPAPAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVPELA 108 RG P P LK+L G R V P ++ AP CP WL AK W R+ L Sbjct 12 RGRKPKPTNLKILEGNPGKRPLPNNEVKP----KQKAPRCPQWLEDDAKKEWKRMGKILE 67 Query 109 ALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAATRD 168 + +L E D+ +C A+ + +A + G I V P V+ ++ + Sbjct 68 QMGILTEMDMTAFAGYCQAYARWKEAEEFLSKHGSIIKTPNGYLQQV-PQVSISQTNLKI 126 Query 169 VLVLARELGCTPSAEANLAAVLAAAGDPDDDE 200 +L + G TPSA LA + A G D+ E Sbjct 127 MLKFCEQFGLTPSARNRLATMDADVGTGDEME 158 >gi|343525830|ref|ZP_08762783.1| phage terminase, small subunit, P27 family [Streptococcus constellatus subsp. pharyngis SK1060] gi|343395240|gb|EGV07781.1| phage terminase, small subunit, P27 family [Streptococcus constellatus subsp. pharyngis SK1060] Length=165 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 45/152 (30%), Positives = 65/152 (43%), Gaps = 5/152 (3%) Query 49 RGPAPAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVPELA 108 RG P P LK+L G R V P ++ AP CP WL AK W R+ L Sbjct 12 RGRKPKPTNLKILEGNPGKRPLPTNEVKP----KQKAPRCPQWLEDDAKKEWKRMGKILE 67 Query 109 ALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAATRD 168 + +L E D+ +C A+ + +A + G I V P V+ ++ + Sbjct 68 QMGILTEMDMTAFAGYCQAYARWKEAEEFLSKHGSIIKTPNGYLQQV-PQVSISQTNLKI 126 Query 169 VLVLARELGCTPSAEANLAAVLAAAGDPDDDE 200 +L + G TPSA LA + A G D+ E Sbjct 127 MLKFCEQFGLTPSARNRLATMDAEVGTGDEME 158 >gi|341577218|gb|EGS27626.1| prophage LambdaSa04, P27 family terminase small subunit [Streptococcus agalactiae FSL S3-026] Length=157 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 45/155 (30%), Positives = 65/155 (42%), Gaps = 5/155 (3%) Query 46 MGRRGPAPAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVP 105 M RG P P LK+L G R V P ++ P CP WL AK W R+ Sbjct 1 MAVRGRKPKPTNLKILEGNPGKRPLPTNEVKP----KQKGPRCPQWLEDDAKKEWKRMGK 56 Query 106 ELAALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAA 165 L + +L E D+ +C A+ + +A + G I V P V+ ++ Sbjct 57 ILEQMGILTEMDMTAFAGYCQAYARWKEAEEFLSKHGSIIKTPNGYLQQV-PQVSISQTN 115 Query 166 TRDVLVLARELGCTPSAEANLAAVLAAAGDPDDDE 200 + +L + G TPSA LA + A G D+ E Sbjct 116 LKIMLKFCEQFGLTPSARNRLATMDAEVGTGDEME 150 >gi|319757812|gb|ADV69754.1| phage terminase, small subunit, putative [Streptococcus suis JS14] gi|333770613|gb|EGL47629.1| phage terminase, small subunit, P27 family [Streptococcus dysgalactiae subsp. equisimilis SK1249] Length=157 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 44/155 (29%), Positives = 66/155 (43%), Gaps = 5/155 (3%) Query 46 MGRRGPAPAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVP 105 M RG P P +K+L G R V P ++ AP CP WL AK W R+ Sbjct 1 MAIRGRKPKPTNMKILEGNPGKRPLPTNEVKP----KQKAPRCPQWLEDDAKKEWKRMGK 56 Query 106 ELAALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAA 165 L + +L E D+ +C A+ + +A + G I V P V+ ++ Sbjct 57 ILEQMGILTEMDMTAFAGYCQAYARWKEAEEFLSKHGSIIKTPNGYLQQV-PQVSISQTN 115 Query 166 TRDVLVLARELGCTPSAEANLAAVLAAAGDPDDDE 200 + +L + G TPSA LA + + G D+ E Sbjct 116 LKIMLKFCEQFGLTPSARNRLATMDSEVGTGDEME 150 >gi|289569614|ref|ZP_06449841.1| predicted protein [Mycobacterium tuberculosis T17] gi|289543368|gb|EFD47016.1| predicted protein [Mycobacterium tuberculosis T17] Length=98 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/99 (43%), Positives = 54/99 (55%), Gaps = 4/99 (4%) Query 110 LNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAATRDV 169 L+LLK +L+++C W + AV R +G T+ +S V +PAV A A + Sbjct 4 LDLLKPEVRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARMHL 63 Query 170 LVLARELGCTPSAEANLAAVLAAAGDPDDDEFNPFAPDR 208 L LA E G TP+AE LA A GD D D NPFAPDR Sbjct 64 LRLASEFGLTPAAEQRLA---VAPGD-DGDGLNPFAPDR 98 >gi|288916276|ref|ZP_06410655.1| phage terminase, small subunit, , P27 family [Frankia sp. EUN1f] gi|288352255|gb|EFC86453.1| phage terminase, small subunit, , P27 family [Frankia sp. EUN1f] Length=153 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 50/151 (34%), Positives = 72/151 (48%), Gaps = 8/151 (5%) Query 55 PAQLKLLGGR---SPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVPELAALN 111 P LKLL G +PGR + G P A PE P L A+D+W +P L Sbjct 7 PTALKLLHGVDKVNPGRINRGEAAVPLAP----NPEPPLDLDAVARDVWDHYLPILRTAR 62 Query 112 LLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAATRDVLV 171 LL E+D+ + C +W AV A R +G + R +V +PA A+ + + + Sbjct 63 LLTEADVLAFAALCQSWSSYRAAVEAVRREGPLTVGGRG-QVVRNPAALVAKDSLAEFMR 121 Query 172 LARELGCTPSAEANLAAVLAAAGDPDDDEFN 202 LA E G TPS+ A ++ A +GD DD + Sbjct 122 LAVEFGLTPSSRARISLPEAGSGDALDDLLS 152 >gi|336234247|ref|YP_004586863.1| phage terminase, small subunit, P27 family [Geobacillus thermoglucosidasius C56-YS93] gi|335361102|gb|AEH46782.1| phage terminase, small subunit, , P27 family [Geobacillus thermoglucosidasius C56-YS93] Length=165 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 47/153 (31%), Positives = 70/153 (46%), Gaps = 18/153 (11%) Query 46 MGRRGPAPAPAQLKLLGGRSP--------GRDSGGRRVTPPAAFERVAPECPDWLPPGAK 97 MGR+ P QL LL G R R+ P A ++V P P WL P AK Sbjct 1 MGRKA---MPIQLHLLQGNKSRLTKKEIEQRMEAEERLKPKA--DKVKP--PSWLDPLAK 53 Query 98 DMWGRVVPELAALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIA--TNARSRRVTV 155 + R+V EL+ L L+ D+ L ++C A+ ++ +E+G + TN + V Sbjct 54 KEFKRIVSELSELGLITNVDIVALATYCDAYSDYVKCTKLIQEEGMMVEYTNKAAETNKV 113 Query 156 -HPAVAAARAATRDVLVLARELGCTPSAEANLA 187 HP + + + +A E G +PSA A LA Sbjct 114 PHPLLTKKKQLFEQMKAVASEFGLSPSARAKLA 146 >gi|125974227|ref|YP_001038137.1| P27 family phage terminase small subunit [Clostridium thermocellum ATCC 27405] gi|125714452|gb|ABN52944.1| phage terminase, small subunit, putative, P27 family [Clostridium thermocellum ATCC 27405] Length=160 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 46/159 (29%), Positives = 71/159 (45%), Gaps = 11/159 (6%) Query 46 MGRRGPAPAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVP 105 M +RG P P LK+L G +PG+ P E+ AP+CP WL AK W R+ Sbjct 1 MAQRGRKPKPTALKILEG-NPGKRPLNEDEPKP---EKKAPKCPGWLDAEAKKEWRRMSK 56 Query 106 ELAALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAA 165 +L A+ +L E D+ +C A+ + +A + G I V P V+ A+ Sbjct 57 QLEAMGILTEIDMAAFAGYCQAYARWKEAEEFITKHGTIVKTPSGYWQQV-PQVSIAQTY 115 Query 166 TRDVLVLARELGCTPSAEANLAAVLAAAGDPDDDEFNPF 204 + + + G TPSA + + D +DE +P Sbjct 116 LKIMNRFCEQFGLTPSARSRIVT------DNINDEEDPM 148 >gi|298486629|ref|ZP_07004687.1| Small terminase subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158844|gb|EFH99906.1| Small terminase subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length=161 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 46/153 (31%), Positives = 72/153 (48%), Gaps = 7/153 (4%) Query 49 RGPAPAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVPELA 108 RG P P K L G +PG+ + + PA + + P+WL A MW +VPEL Sbjct 10 RGRKPKPTAKKALAG-NPGKRALNK--AEPAFSKITNVDPPEWLSDRASQMWKMIVPELL 66 Query 109 ALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAATRD 168 N++ +DL + +FCVA+D A + R G + T A + +PA+ AA R Sbjct 67 RENVVAITDLHNVEAFCVAYDNWRMAQESVRAHGIVVTGATGGPMK-NPALTAANETMRQ 125 Query 169 VLVLARELGCTPSAEANLAAVLAAAGDPDDDEF 201 ++ LG P AN ++ + + +EF Sbjct 126 MVTFGAMLGLDP---ANRTRLIGGNKEKETNEF 155 >gi|342903080|ref|ZP_08724893.1| prophage LambdaSa04, P27 family terminase small subunit [Streptococcus urinalis 2285-97] Length=157 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/155 (30%), Positives = 64/155 (42%), Gaps = 5/155 (3%) Query 46 MGRRGPAPAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVP 105 M RG P P LK+L G R V P + AP CP WL AK W R+ Sbjct 1 MAIRGRKPKPTNLKILEGNPGKRPLPTNEVKP----KHKAPRCPQWLEDDAKKEWKRMGK 56 Query 106 ELAALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAA 165 L + +L E DL +C A+ + +A + G I V P V+ ++ Sbjct 57 ILEQMGILTEMDLTAFAGYCQAYARWKEAEEFLSKHGSIIKTPNGYLQQV-PQVSISQTN 115 Query 166 TRDVLVLARELGCTPSAEANLAAVLAAAGDPDDDE 200 + +L + TPSA LA + A G D+ E Sbjct 116 LKIMLKFCEQFVLTPSARNRLATMDAEVGTGDEME 150 >gi|302188728|ref|ZP_07265401.1| P27 family phage terminase small subunit [Pseudomonas syringae pv. syringae 642] Length=161 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/157 (30%), Positives = 71/157 (46%), Gaps = 10/157 (6%) Query 49 RGPAPAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVPELA 108 RG P P K L G +PG+ + + + V P P+WL A MW +VPEL Sbjct 10 RGRKPKPTAKKALAG-NPGKRALNKAEPAFSKITNVDP--PEWLSDRASQMWKMIVPELL 66 Query 109 ALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAATRD 168 N++ +DL + +FCVA+D A + + G + T A + +PA+ AA R Sbjct 67 RENVVAITDLHNVEAFCVAYDNWRMAQQSVQAHGIVVTGATGGPMK-NPALTAANETMRQ 125 Query 169 VLVLARELGCTPSAEANLAAVLAAAGDPDDDEFNPFA 205 ++ LG P++ L G + E N FA Sbjct 126 MVTFGSMLGLDPASRTRL------IGGNKEKETNEFA 156 >gi|330989641|gb|EGH87744.1| P27 family phage terminase small subunit [Pseudomonas syringae pv. lachrymans str. M301315] Length=161 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/157 (30%), Positives = 71/157 (46%), Gaps = 10/157 (6%) Query 49 RGPAPAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVPELA 108 RG P P K L G +PG+ + + + V P P+WL A MW +VPEL Sbjct 10 RGRKPKPTAKKALAG-NPGKRALNKAEPAFSKITNVDP--PEWLSDRASQMWKMIVPELL 66 Query 109 ALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAATRD 168 N++ +DL + +FCVA+D A + + G + T A + +PA+ AA R Sbjct 67 RENVVAITDLHNVEAFCVAYDNWRMAQESVQAHGIVVTGATGGPMK-NPALTAANETMRQ 125 Query 169 VLVLARELGCTPSAEANLAAVLAAAGDPDDDEFNPFA 205 ++ LG P++ L G + E N FA Sbjct 126 MVTFGSMLGLDPASRTRL------IGGNKEKETNEFA 156 >gi|330954013|gb|EGH54273.1| P27 family phage terminase small subunit [Pseudomonas syringae Cit 7] Length=161 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/157 (30%), Positives = 71/157 (46%), Gaps = 10/157 (6%) Query 49 RGPAPAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVPELA 108 RG P P K L G +PG+ + + + V P P+WL A MW +VPEL Sbjct 10 RGRKPKPTAKKALAG-NPGKRALNKAEPAFSKITNVDP--PEWLSDRASQMWKMIVPELL 66 Query 109 ALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAATRD 168 N++ +DL + +FCVA+D A + + G + T A + +PA+ AA R Sbjct 67 RENVVAITDLHNVEAFCVAYDNWRMAQESVQAHGIVVTGATGGPMK-NPALTAANETMRQ 125 Query 169 VLVLARELGCTPSAEANLAAVLAAAGDPDDDEFNPFA 205 ++ LG P++ L G + E N FA Sbjct 126 MVTFGSMLGLDPASRTRL------IGGNKEKETNEFA 156 >gi|83647247|ref|YP_435682.1| P27 family phage terminase small subunit [Hahella chejuensis KCTC 2396] gi|83635290|gb|ABC31257.1| phage terminase, small subunit, putative, P27 family [Hahella chejuensis KCTC 2396] Length=158 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/156 (30%), Positives = 67/156 (43%), Gaps = 10/156 (6%) Query 49 RGPAPAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVPELA 108 RG P P KLL G +PG+ P + +CPDWL A+ MW + PEL Sbjct 10 RGRKPKPVAQKLLAG-NPGKRQ--LNTHEPQFSQITNIDCPDWLGDDARRMWALIAPELC 66 Query 109 ALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAATRD 168 A ++ +D L +FC A+ + QA + G T+A + +PA A + + Sbjct 67 AQKIIAITDAHNLEAFCAAYGRWRQAERELAQYGITITDANG-GLKKNPAATVANESLKQ 125 Query 169 VLVLARELGCTPSAEANLAAVLAAAGDPDDDEFNPF 204 + LG PS+ L G + D NPF Sbjct 126 LATFGALLGLDPSSRQRL------TGGGNQDASNPF 155 >gi|227522323|ref|ZP_03952372.1| conserved hypothetical protein [Lactobacillus hilgardii ATCC 8290] gi|331701882|ref|YP_004398841.1| phage terminase, small subunit, , P27 family [Lactobacillus buchneri NRRL B-30929] gi|227090530|gb|EEI25842.1| conserved hypothetical protein [Lactobacillus hilgardii ATCC 8290] gi|329129225|gb|AEB73778.1| phage terminase, small subunit, , P27 family [Lactobacillus buchneri NRRL B-30929] Length=172 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/164 (28%), Positives = 74/164 (46%), Gaps = 20/164 (12%) Query 55 PAQLKLLGGRSPGRDSGGRR---VTPPAAFERVAPECPDWLPPGAKDMWGRVVPELAALN 111 P Q+KL + +D R +T + + + CP +L A+ MW ++VP L A Sbjct 2 PKQMKLTTDKHARKDQRVRTQKLITETSGMDLIQKSCPKYLSSYARAMWTKLVPILQASG 61 Query 112 LLKESDLGVLTSFCVAWDQLMQAVTAYREQG------FIATNARSRRVTV-------HPA 158 +K++D G + +FC+ + L + + + G N R+ +PA Sbjct 62 YVKQADKGTIEAFCINYQLLRKGYDSIKTDGVVTKVSKTVVNQRTGETYEDNAGWKRNPA 121 Query 159 VAAARAATRDVLVLARELGCTPSAEANLAAVLAAAGDPDDDEFN 202 +AT + LA ELG TPSA A+L + D +D+E N Sbjct 122 SQIIDSATAKLNSLAHELGLTPSARASLLQL----SDDNDEEPN 161 >gi|50914488|ref|YP_060460.1| Phage terminase small subunit [Streptococcus pyogenes MGAS10394] gi|40218568|gb|AAR83222.1| unknown [Streptococcus pyogenes] gi|50261613|gb|AAT72381.1| phage terminase small subunit [Streptococcus pyogenes] gi|50903562|gb|AAT87277.1| Phage Terminase Small Subunit [Streptococcus pyogenes MGAS10394] Length=158 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/159 (28%), Positives = 68/159 (43%), Gaps = 8/159 (5%) Query 46 MGRRGPAPAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVP 105 + +RG P P LK+L G R + P + AP CP WL AK W R+ Sbjct 4 LAQRGRKPKPTGLKVLEGNLGKRPLNHKEPKPT----KKAPRCPSWLEEDAKKEWKRMSK 59 Query 106 ELAALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAA 165 L ++ LL + D+ +C A+ + +A + G I V P V+ A+ Sbjct 60 VLESMGLLTDMDMTAFAGYCQAYARWKEAEEFLTKHGSIIKTPNGYLQQV-PQVSIAQTN 118 Query 166 TRDVLVLARELGCTPSAEANLAAVLAAAGDPDDDEFNPF 204 + +L + + G TPSA + + A + D + DE Sbjct 119 MKIMLKFSEQFGLTPSARSR---IQADSSDGEQDEMESL 154 >gi|302873678|ref|YP_003842311.1| phage terminase, small subunit, , P27 family [Clostridium cellulovorans 743B] gi|307686598|ref|ZP_07629044.1| phage terminase, small subunit, , P27 family protein [Clostridium cellulovorans 743B] gi|302576535|gb|ADL50547.1| phage terminase, small subunit, , P27 family [Clostridium cellulovorans 743B] Length=156 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/156 (30%), Positives = 70/156 (45%), Gaps = 7/156 (4%) Query 46 MGRRGPAPAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVP 105 M RG P P LK+L G +PG+ S P E+ A +CP WL P AK W R+ Sbjct 1 MATRGRKPKPTALKVLEG-NPGKRSLNLNEPKP---EKKASKCPSWLEPEAKKEWRRMSK 56 Query 106 ELAALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAA 165 L + +L + D +C A+ + +A + G I S + P V+ A+ Sbjct 57 TLEQIGVLTQVDTAAFAGYCQAYARWKEAEEFLSKHGTIFKTP-SGYIQQVPQVSIAQTY 115 Query 166 TRDVLVLARELGCTPSAEANLAAVLAAA--GDPDDD 199 + + E G TPS+ + + A A + DP +D Sbjct 116 LKIMKDFCSEFGLTPSSRSRINAGTATSETSDPMED 151 >gi|170732638|ref|YP_001764585.1| P27 family phage terminase small subunit [Burkholderia cenocepacia MC0-3] gi|169815880|gb|ACA90463.1| phage terminase, small subunit, , P27 family [Burkholderia cenocepacia MC0-3] Length=132 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 67/150 (45%), Gaps = 24/150 (16%) Query 53 PAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVPELAALNL 112 P P QLKLL G R P + P CP+W P A+ W R+VPEL L + Sbjct 7 PIPTQLKLLAGNPGKRPLNTNEPQPETG---IGP-CPEWFLPEAEQEWNRIVPELERLGM 62 Query 113 LKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAATRDVLVL 172 L + D+ +L + CV + +++ +++ P AA R +L Sbjct 63 LTKIDIAILEAHCVCYAEMVVTAKSHK-----------------PVKAALIGQLR---IL 102 Query 173 ARELGCTPSAEANLAAVLAAAGDPDDDEFN 202 A ELG +PS+ + ++ DP ++ F+ Sbjct 103 AAELGLSPSSRSRISVPNPNNDDPTEEFFS 132 >gi|332800335|ref|YP_004461834.1| phage terminase, small subunit P27 family [Tepidanaerobacter sp. Re1] gi|332698070|gb|AEE92527.1| phage terminase, small subunit, , P27 family [Tepidanaerobacter sp. Re1] Length=157 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 45/154 (30%), Positives = 67/154 (44%), Gaps = 7/154 (4%) Query 46 MGRRGPAPAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVP 105 M RG P P LK+L G +PG+ + P E+ AP CP WL P AK W R+ Sbjct 1 MAMRGRKPKPTALKVLEG-NPGKRPLNDKEPQP---EKKAPRCPSWLEPEAKKEWKRMAK 56 Query 106 ELAALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAA 165 L A+ +L + D +C A+ + +A + G I S + P V+ A+ Sbjct 57 TLEAMGVLTQVDRTAFEGYCQAYARWKEAEEFLSKHGTIFKTP-SGYIQQVPQVSIAQTY 115 Query 166 TRDVLVLARELGCTPSAEANLAAVLAAAGDPDDD 199 + + E G TP+A + + P DD Sbjct 116 LKVMKDFCSEFGLTPAARTRIQ--VNTIDTPTDD 147 >gi|296051581|ref|YP_003632255.1| phage terminase, small subunit, , P27 family [Planctomyces limnophilus DSM 3776] gi|296016818|gb|ADG70056.1| phage terminase, small subunit, , P27 family [Planctomyces limnophilus DSM 3776] Length=160 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 45/142 (32%), Positives = 60/142 (43%), Gaps = 6/142 (4%) Query 46 MGRRGPAPAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVP 105 M +RGP PA+ L G + D P F PE PDWL + W R+ P Sbjct 1 MPKRGPKKKPAEAHLAAG-TYREDRHATIKMPVDDF----PEPPDWLGEHGLNEWRRLQP 55 Query 106 ELAALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVH-PAVAAARA 164 L++ LL E D + C AW ++A +G IA PAV A Sbjct 56 ILSSRGLLTEVDWMAFSLLCQAWHDYIEATQKVAAEGIIAIGGGENGSEYQAPAVGVANK 115 Query 165 ATRDVLVLARELGCTPSAEANL 186 A + V+ +E GCTPSA + Sbjct 116 AWQRVIKGCQEFGCTPSARTGI 137 >gi|331085739|ref|ZP_08334822.1| hypothetical protein HMPREF0987_01125 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406662|gb|EGG86167.1| hypothetical protein HMPREF0987_01125 [Lachnospiraceae bacterium 9_1_43BFAA] Length=159 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/141 (29%), Positives = 63/141 (45%), Gaps = 5/141 (3%) Query 46 MGRRGPAPAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVP 105 M +RG P P +K+L G +PG+ S P + AP CP WL AK W R+ Sbjct 1 MAQRGRKPKPTAVKVLEG-NPGKRSLNTNEPKPV---KKAPRCPGWLEDEAKKEWKRMAK 56 Query 106 ELAALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAA 165 ++ L +L E D+ +C A+ + +A + G I V P V+ A+ Sbjct 57 QMEQLGILTEIDMAAFAGYCQAYARWKEAEEFITQHGTIVKTPSGYWQQV-PQVSIAQTY 115 Query 166 TRDVLVLARELGCTPSAEANL 186 + + + G TPSA + + Sbjct 116 LKIMNKFCEQFGLTPSARSRI 136 >gi|336435244|ref|ZP_08614961.1| hypothetical protein HMPREF0988_00546 [Lachnospiraceae bacterium 1_4_56FAA] gi|336001635|gb|EGN31771.1| hypothetical protein HMPREF0988_00546 [Lachnospiraceae bacterium 1_4_56FAA] Length=159 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 40/141 (29%), Positives = 63/141 (45%), Gaps = 5/141 (3%) Query 46 MGRRGPAPAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVP 105 M +RG P P +K+L G +PG+ S P + AP CP WL AK W R+ Sbjct 1 MAQRGRKPKPTAVKVLEG-NPGKRSLNTNEPKPV---KKAPRCPAWLEDEAKKEWKRMAK 56 Query 106 ELAALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAA 165 ++ L +L E D+ +C A+ + +A + G I V P V+ A+ Sbjct 57 QMEQLGILTEIDMAAFAGYCQAYARWKEAEEFITQHGTIVKTPSGYWQQV-PQVSIAQTY 115 Query 166 TRDVLVLARELGCTPSAEANL 186 + + + G TPSA + + Sbjct 116 LKIMNKFCEQFGLTPSARSRI 136 >gi|300853552|ref|YP_003778536.1| putative phage terminasesmall subunit [Clostridium ljungdahlii DSM 13528] gi|300433667|gb|ADK13434.1| predicted phage terminase, small subunit [Clostridium ljungdahlii DSM 13528] Length=156 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/153 (30%), Positives = 66/153 (44%), Gaps = 6/153 (3%) Query 46 MGRRGPAPAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVP 105 M RG P P LK+L G +PG+ P E+ AP+CP WL P AK W R+ Sbjct 1 MATRGRKPKPTALKVLEG-NPGKRPLNINEPKP---EKKAPKCPSWLEPEAKKEWRRMTK 56 Query 106 ELAALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAA 165 L + +L + D +C A+ + +A + G I S + P V+ A+ Sbjct 57 TLEKIGVLTKVDAAAFAGYCQAYARWKEAEEFLTKHGTIFKTP-SGYIQQVPQVSIAQTY 115 Query 166 TRDVLVLARELGCTPSAEANLAAVLAAAGDPDD 198 + + E G TPS+ + V G DD Sbjct 116 LKIMKDFCSEFGLTPSSRTRI-RVGTETGKNDD 147 >gi|120601919|ref|YP_966319.1| P27 family phage terminase small subunit [Desulfovibrio vulgaris DP4] gi|120562148|gb|ABM27892.1| phage terminase, small subunit, putative, P27 family [Desulfovibrio vulgaris DP4] Length=152 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/139 (30%), Positives = 65/139 (47%), Gaps = 5/139 (3%) Query 50 GPAPAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVPELAA 109 G P P++LK+L G D R + + P+ P +L A+D W R P LA Sbjct 3 GRKPLPSKLKVL----KGTDQPCRMNPHEPSLTALVPDAPAFLGAIARDEWNRKAPMLAR 58 Query 110 LNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAATRDV 169 + +L E D L ++C A+++ ++A R+ G + + S V +P V A A + Sbjct 59 MGVLTEGDDAALAAYCQAYERFVEAEGKIRQSGLLIKTS-SGNVIQNPLVGVANRAMELM 117 Query 170 LVLARELGCTPSAEANLAA 188 E G TPS+ +AA Sbjct 118 HRFMTEFGLTPSSRTRIAA 136 >gi|229156197|ref|ZP_04284294.1| Phage Terminase Small Subunit [Bacillus cereus ATCC 4342] gi|228627268|gb|EEK83998.1| Phage Terminase Small Subunit [Bacillus cereus ATCC 4342] Length=167 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/151 (28%), Positives = 66/151 (44%), Gaps = 11/151 (7%) Query 46 MGRRGPAPAPAQLKLLGGRSP--GRDSGGRRVTPPAAFE----RVAPECPDWLPPGAKDM 99 M R G P L LL G + +D +R+ + +V P P WL AK Sbjct 1 MVRIGRKAKPIHLHLLEGNTNRLTKDEIEQRLKAEKQLQAKKDKVKP--PTWLDSVAKKE 58 Query 100 WGRVVPELAALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIA--TNARSRRVTV-H 156 + R+ EL L+++ D+ L ++C A+ ++ RE+G + TN + V H Sbjct 59 FRRIAGELLELDVITNIDVNALATYCDAYSDYVECTKIIREEGLLVEYTNKAAETNKVPH 118 Query 157 PAVAAARAATRDVLVLARELGCTPSAEANLA 187 P + + + LA E G TPSA A + Sbjct 119 PLLTKKKQLHEQIKALAVEFGLTPSARAKIV 149 >gi|296159096|ref|ZP_06841923.1| phage terminase, small subunit, , P27 family [Burkholderia sp. Ch1-1] gi|295890657|gb|EFG70448.1| phage terminase, small subunit, , P27 family [Burkholderia sp. Ch1-1] Length=182 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/116 (36%), Positives = 61/116 (53%), Gaps = 12/116 (10%) Query 40 RRVVLKMGRRGPAPAPAQLKLLGGRSPGRD----SGGRRVTPPAAFERVAPECPDWLPPG 95 + ++ MG+RGP PAPA LKL+ G +PG+ S G V P A P+ P L Sbjct 3 KHLLAHMGQRGPQPAPAALKLIRG-NPGKRPINLSDG--VNPEVAI----PDAPRHLNKE 55 Query 96 AKDMWGRVVPELAALNLLKESDLGVLTSFCVAWDQLMQAVTAYRE-QGFIATNARS 150 A+ W RV EL L L+ D L +C AW +L++ TA+++ Q +A ++ Sbjct 56 ARKEWKRVSAELEQLGLISRLDRAALALYCQAWGRLVELETAFQKRQDLLAAEGKT 111 >gi|261418100|ref|YP_003251782.1| phage terminase, small subunit, , P27 family [Geobacillus sp. Y412MC61] gi|319767941|ref|YP_004133442.1| phage terminase, small subunit, , P27 family [Geobacillus sp. Y412MC52] gi|261374557|gb|ACX77300.1| phage terminase, small subunit, , P27 family [Geobacillus sp. Y412MC61] gi|317112807|gb|ADU95299.1| phage terminase, small subunit, , P27 family [Geobacillus sp. Y412MC52] Length=165 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/153 (31%), Positives = 67/153 (44%), Gaps = 18/153 (11%) Query 46 MGRRGPAPAPAQLKLLGGRS--------PGRDSGGRRVTPPAAFERVAPECPDWLPPGAK 97 MGR+ P QL LL G R +R+ P A +V P P WL AK Sbjct 1 MGRKA---MPIQLHLLQGNKNRLTKKEIEQRVEAEKRLKPKA--NKVKP--PAWLSDEAK 53 Query 98 DMWGRVVPELAALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIA--TNARSRRVTV 155 + R+V E+ L+LL D+ L +C A+ ++ E+G + TN + V Sbjct 54 KEFKRIVKEMQDLDLLTNIDVDALALYCDAYVNYIECTRIIAEEGLMVEYTNKAAETNKV 113 Query 156 -HPAVAAARAATRDVLVLARELGCTPSAEANLA 187 HP + + + LA E G TP++ A LA Sbjct 114 PHPLLTKKKQLHEQMKSLAAEFGLTPASRAKLA 146 >gi|218234873|ref|YP_002367329.1| phage terminase, small subunit, putative, P27 family [Bacillus cereus B4264] gi|218162830|gb|ACK62822.1| putative phage terminase, small subunit, P27 family [Bacillus cereus B4264] Length=167 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 42/151 (28%), Positives = 66/151 (44%), Gaps = 11/151 (7%) Query 46 MGRRGPAPAPAQLKLLGGRSP--GRDSGGRRVTPPAAFE----RVAPECPDWLPPGAKDM 99 M R G P L LL G + +D +R+ + +V P P WL AK Sbjct 1 MVRIGRKAKPIHLHLLEGNTNRLTKDEIEQRLKAEKQLQAKKDKVKP--PTWLDSVAKKE 58 Query 100 WGRVVPELAALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIA--TNARSRRVTV-H 156 + R+ EL L+++ D+ L ++C A+ ++ RE+G + TN + V H Sbjct 59 FRRIAGELLELDVITNIDVNALATYCDAYSDYVECTKIIREEGLLVEYTNKAAETNKVPH 118 Query 157 PAVAAARAATRDVLVLARELGCTPSAEANLA 187 P + + + LA E G TPSA A + Sbjct 119 PLLTKKKQLHEQMKALAVEFGLTPSARAKIV 149 Lambda K H 0.320 0.135 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 239574757050 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40