BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2653c Length=107 Score E Sequences producing significant alignments: (Bits) Value gi|308374651|ref|ZP_07436859.2| phiRv2 phage protein [Mycobacter... 220 7e-56 gi|167967169|ref|ZP_02549446.1| hypothetical phiRv2 prophage pro... 220 7e-56 gi|308379272|ref|ZP_07485710.2| hypothetical protein TMJG_01638 ... 219 9e-56 gi|15609790|ref|NP_217169.1| phiRv2 prophage protein [Mycobacter... 218 2e-55 gi|289448308|ref|ZP_06438052.1| phiRv2 phage protein [Mycobacter... 216 1e-54 gi|289444194|ref|ZP_06433938.1| phi phage protein [Mycobacterium... 213 6e-54 gi|298526126|ref|ZP_07013535.1| hypothetical protein TBAG_01541 ... 106 1e-21 gi|317494701|ref|ZP_07953113.1| ATP-dependent DNA helicase RecG ... 39.7 0.17 gi|68250339|ref|YP_249451.1| ATP-dependent DNA helicase RecG [Ha... 39.3 0.22 gi|322835059|ref|YP_004215086.1| ATP-dependent DNA helicase RecG... 38.5 0.31 gi|345430562|ref|YP_004823684.1| ATP-dependent DNA helicase [Hae... 38.1 0.40 gi|342904871|ref|ZP_08726667.1| ATP-dependent DNA helicase recG ... 38.1 0.48 gi|301170495|emb|CBW30102.1| ATP-dependent DNA helicase [Haemoph... 37.7 0.63 gi|148825722|ref|YP_001290475.1| ATP-dependent DNA helicase RecG... 37.7 0.65 gi|293391661|ref|ZP_06635995.1| ATP-dependent DNA helicase RecG ... 37.4 0.73 gi|221214464|ref|ZP_03587435.1| ATP-dependent DNA helicase RecG ... 37.4 0.74 gi|145633450|ref|ZP_01789180.1| DNA-directed RNA polymerase subu... 37.4 0.79 gi|148827157|ref|YP_001291910.1| ATP-dependent DNA helicase RecG... 37.4 0.80 gi|145630714|ref|ZP_01786493.1| DNA-directed RNA polymerase subu... 37.4 0.80 gi|229845419|ref|ZP_04465549.1| ATP-dependent DNA helicase [Haem... 37.4 0.80 gi|341949580|gb|EGT76183.1| ATP-dependent DNA helicase recG [Hae... 37.4 0.82 gi|16273626|ref|NP_439884.1| ATP-dependent DNA helicase RecG [Ha... 37.4 0.82 gi|145639715|ref|ZP_01795318.1| DNA-directed RNA polymerase subu... 37.4 0.83 gi|319776734|ref|YP_004139222.1| ATP-dependent DNA helicase [Hae... 37.4 0.84 gi|341952565|gb|EGT79090.1| ATP-dependent DNA helicase recG [Hae... 37.4 0.84 gi|146309754|ref|YP_001174828.1| ATP-dependent DNA helicase RecG... 37.4 0.85 gi|341950798|gb|EGT77385.1| ATP-dependent DNA helicase recG [Hae... 37.0 0.86 gi|145636800|ref|ZP_01792466.1| DNA-directed RNA polymerase subu... 37.0 0.86 gi|145641878|ref|ZP_01797453.1| DNA-directed RNA polymerase subu... 37.0 0.89 gi|296100479|ref|YP_003610625.1| ATP-dependent DNA helicase [Ent... 37.0 0.92 gi|238755589|ref|ZP_04616926.1| ATP-dependent DNA helicase recG ... 37.0 0.92 gi|261341740|ref|ZP_05969598.1| hypothetical protein ENTCAN_0821... 37.0 0.92 gi|145629154|ref|ZP_01784953.1| DNA-directed RNA polymerase subu... 37.0 0.93 gi|325577828|ref|ZP_08148103.1| DNA helicase RecG [Haemophilus p... 37.0 0.95 gi|270316155|gb|EFA28139.1| ATP-dependent DNA helicase recG [Hae... 37.0 1.00 gi|341956366|gb|EGT82794.1| ATP-dependent DNA helicase recG [Hae... 37.0 1.1 gi|326565924|gb|EGE16085.1| ATP-dependent DNA helicase RecG [Mor... 37.0 1.1 gi|334126222|ref|ZP_08500201.1| DNA helicase RecG [Enterobacter ... 36.6 1.1 gi|296112326|ref|YP_003626264.1| ATP-dependent DNA helicase RecG... 36.6 1.1 gi|295095240|emb|CBK84330.1| ATP-dependent DNA helicase RecG [En... 36.6 1.1 gi|326576486|gb|EGE26394.1| ATP-dependent DNA helicase RecG [Mor... 36.6 1.1 gi|326571914|gb|EGE21919.1| ATP-dependent DNA helicase RecG [Mor... 36.6 1.2 gi|326563268|gb|EGE13535.1| ATP-dependent DNA helicase RecG [Mor... 36.6 1.2 gi|261868130|ref|YP_003256052.1| ATP-dependent DNA helicase RecG... 36.6 1.2 gi|300725269|ref|YP_003714598.1| DNA helicase [Xenorhabdus nemat... 36.6 1.3 gi|290473314|ref|YP_003466180.1| DNA helicase, ATP-dependent res... 36.6 1.4 gi|204928489|ref|ZP_03219688.1| ATP-dependent DNA helicase RecG ... 36.2 1.5 gi|36783701|emb|CAE12554.1| ATP-dependent DNA helicase [Photorha... 36.2 1.5 gi|15602784|ref|NP_245856.1| hypothetical protein PM0919 [Pasteu... 36.2 1.5 gi|85060202|ref|YP_455904.1| ATP-dependent DNA helicase RecG [So... 36.2 1.6 >gi|308374651|ref|ZP_07436859.2| phiRv2 phage protein [Mycobacterium tuberculosis SUMu006] gi|308341200|gb|EFP30051.1| phiRv2 phage protein [Mycobacterium tuberculosis SUMu006] Length=167 Score = 220 bits (560), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 107/107 (100%), Positives = 107/107 (100%), Gaps = 0/107 (0%) Query 1 LTHKRTKRQPAIAAGLNAPRRNRVGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVA 60 LTHKRTKRQPAIAAGLNAPRRNRVGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVA Sbjct 61 LTHKRTKRQPAIAAGLNAPRRNRVGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVA 120 Query 61 TSHEIDDDTAELALLSMHLDDEQRRLEAGMKLGWHPYHFPDEPDSKQ 107 TSHEIDDDTAELALLSMHLDDEQRRLEAGMKLGWHPYHFPDEPDSKQ Sbjct 121 TSHEIDDDTAELALLSMHLDDEQRRLEAGMKLGWHPYHFPDEPDSKQ 167 >gi|167967169|ref|ZP_02549446.1| hypothetical phiRv2 prophage protein [Mycobacterium tuberculosis H37Ra] gi|253798265|ref|YP_003031266.1| phiRv2 phage protein [Mycobacterium tuberculosis KZN 1435] gi|254551707|ref|ZP_05142154.1| phiRv2 phage protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] 11 more sequence titles Length=138 Score = 220 bits (560), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 107/107 (100%), Positives = 107/107 (100%), Gaps = 0/107 (0%) Query 1 LTHKRTKRQPAIAAGLNAPRRNRVGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVA 60 LTHKRTKRQPAIAAGLNAPRRNRVGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVA Sbjct 32 LTHKRTKRQPAIAAGLNAPRRNRVGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVA 91 Query 61 TSHEIDDDTAELALLSMHLDDEQRRLEAGMKLGWHPYHFPDEPDSKQ 107 TSHEIDDDTAELALLSMHLDDEQRRLEAGMKLGWHPYHFPDEPDSKQ Sbjct 92 TSHEIDDDTAELALLSMHLDDEQRRLEAGMKLGWHPYHFPDEPDSKQ 138 >gi|308379272|ref|ZP_07485710.2| hypothetical protein TMJG_01638 [Mycobacterium tuberculosis SUMu010] gi|308357560|gb|EFP46411.1| hypothetical protein TMJG_01638 [Mycobacterium tuberculosis SUMu010] Length=154 Score = 219 bits (559), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 107/107 (100%), Positives = 107/107 (100%), Gaps = 0/107 (0%) Query 1 LTHKRTKRQPAIAAGLNAPRRNRVGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVA 60 LTHKRTKRQPAIAAGLNAPRRNRVGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVA Sbjct 48 LTHKRTKRQPAIAAGLNAPRRNRVGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVA 107 Query 61 TSHEIDDDTAELALLSMHLDDEQRRLEAGMKLGWHPYHFPDEPDSKQ 107 TSHEIDDDTAELALLSMHLDDEQRRLEAGMKLGWHPYHFPDEPDSKQ Sbjct 108 TSHEIDDDTAELALLSMHLDDEQRRLEAGMKLGWHPYHFPDEPDSKQ 154 >gi|15609790|ref|NP_217169.1| phiRv2 prophage protein [Mycobacterium tuberculosis H37Rv] gi|15842193|ref|NP_337230.1| hypothetical protein MT2730 [Mycobacterium tuberculosis CDC1551] gi|148662495|ref|YP_001284018.1| putative phiRv2 prophage protein [Mycobacterium tuberculosis H37Ra] 36 more sequence titles Length=107 Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 106/107 (99%), Positives = 107/107 (100%), Gaps = 0/107 (0%) Query 1 LTHKRTKRQPAIAAGLNAPRRNRVGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVA 60 +THKRTKRQPAIAAGLNAPRRNRVGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVA Sbjct 1 MTHKRTKRQPAIAAGLNAPRRNRVGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVA 60 Query 61 TSHEIDDDTAELALLSMHLDDEQRRLEAGMKLGWHPYHFPDEPDSKQ 107 TSHEIDDDTAELALLSMHLDDEQRRLEAGMKLGWHPYHFPDEPDSKQ Sbjct 61 TSHEIDDDTAELALLSMHLDDEQRRLEAGMKLGWHPYHFPDEPDSKQ 107 >gi|289448308|ref|ZP_06438052.1| phiRv2 phage protein [Mycobacterium tuberculosis CPHL_A] gi|289421266|gb|EFD18467.1| phiRv2 phage protein [Mycobacterium tuberculosis CPHL_A] Length=107 Score = 216 bits (550), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 105/107 (99%), Positives = 106/107 (99%), Gaps = 0/107 (0%) Query 1 LTHKRTKRQPAIAAGLNAPRRNRVGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVA 60 +THKRTKRQPAIAAGLNAPRRNRVGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVA Sbjct 1 MTHKRTKRQPAIAAGLNAPRRNRVGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVA 60 Query 61 TSHEIDDDTAELALLSMHLDDEQRRLEAGMKLGWHPYHFPDEPDSKQ 107 TSHEIDDDTAELALLSMHLDDEQRRLEAGMKLGWHPY FPDEPDSKQ Sbjct 61 TSHEIDDDTAELALLSMHLDDEQRRLEAGMKLGWHPYQFPDEPDSKQ 107 >gi|289444194|ref|ZP_06433938.1| phi phage protein [Mycobacterium tuberculosis T46] gi|289570827|ref|ZP_06451054.1| phiRv2 phage protein [Mycobacterium tuberculosis T17] gi|289751305|ref|ZP_06510683.1| phiRv2 phage protein [Mycobacterium tuberculosis T92] gi|289417113|gb|EFD14353.1| phi phage protein [Mycobacterium tuberculosis T46] gi|289544581|gb|EFD48229.1| phiRv2 phage protein [Mycobacterium tuberculosis T17] gi|289691892|gb|EFD59321.1| phiRv2 phage protein [Mycobacterium tuberculosis T92] Length=107 Score = 213 bits (543), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 104/107 (98%), Positives = 105/107 (99%), Gaps = 0/107 (0%) Query 1 LTHKRTKRQPAIAAGLNAPRRNRVGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVA 60 +THKRTKRQPAIAAGLNAPRRNRVGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVA Sbjct 1 MTHKRTKRQPAIAAGLNAPRRNRVGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVA 60 Query 61 TSHEIDDDTAELALLSMHLDDEQRRLEAGMKLGWHPYHFPDEPDSKQ 107 TSHEIDDDTAELALLSMHLDDEQRRLEAGM LGWHPY FPDEPDSKQ Sbjct 61 TSHEIDDDTAELALLSMHLDDEQRRLEAGMMLGWHPYQFPDEPDSKQ 107 >gi|298526126|ref|ZP_07013535.1| hypothetical protein TBAG_01541 [Mycobacterium tuberculosis 94_M4241A] gi|298495920|gb|EFI31214.1| hypothetical protein TBAG_01541 [Mycobacterium tuberculosis 94_M4241A] Length=50 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 50/50 (100%), Positives = 50/50 (100%), Gaps = 0/50 (0%) Query 58 MVATSHEIDDDTAELALLSMHLDDEQRRLEAGMKLGWHPYHFPDEPDSKQ 107 MVATSHEIDDDTAELALLSMHLDDEQRRLEAGMKLGWHPYHFPDEPDSKQ Sbjct 1 MVATSHEIDDDTAELALLSMHLDDEQRRLEAGMKLGWHPYHFPDEPDSKQ 50 >gi|317494701|ref|ZP_07953113.1| ATP-dependent DNA helicase RecG [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917303|gb|EFV38650.1| ATP-dependent DNA helicase RecG [Enterobacteriaceae bacterium 9_2_54FAA] Length=693 Score = 39.7 bits (91), Expect = 0.17, Method: Compositional matrix adjust. Identities = 24/85 (29%), Positives = 40/85 (48%), Gaps = 13/85 (15%) Query 24 VGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQ 83 +G + GW A +Q+ RQ +EAI +M+ +H I D + + L++ + DEQ Sbjct 344 LGLKVGWLA----GKQKGKARQTQMEAIASGEVDMIVGTHAIFQDQVQFSGLALVIIDEQ 399 Query 84 RRL---------EAGMKLGWHPYHF 99 R E G + G+HP+ Sbjct 400 HRFGVHQRLALWEKGEEQGFHPHQL 424 >gi|68250339|ref|YP_249451.1| ATP-dependent DNA helicase RecG [Haemophilus influenzae 86-028NP] gi|68058538|gb|AAX88791.1| ATP-dependent DNA helicase [Haemophilus influenzae 86-028NP] Length=693 Score = 39.3 bits (90), Expect = 0.22, Method: Compositional matrix adjust. Identities = 24/84 (29%), Positives = 39/84 (47%), Gaps = 13/84 (15%) Query 25 GRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQR 84 G + GW A + + RQ +LE I+ +MV +H + + E + L++ + DEQ Sbjct 345 GIEVGWLA----GKVKGKSRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQH 400 Query 85 RL---------EAGMKLGWHPYHF 99 R E G K G+HP+ Sbjct 401 RFGVHQRLMLREKGEKAGFHPHQL 424 >gi|322835059|ref|YP_004215086.1| ATP-dependent DNA helicase RecG [Rahnella sp. Y9602] gi|321170260|gb|ADW75959.1| ATP-dependent DNA helicase RecG [Rahnella sp. Y9602] Length=693 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 25/85 (30%), Positives = 39/85 (46%), Gaps = 13/85 (15%) Query 24 VGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQ 83 +G Q GW A + R+AQ+ +AI MV +H I + + LS+ + DEQ Sbjct 344 LGIQVGWLAGKQKGKARQAQQ----DAIASGQVSMVVGTHAIFQEQVLFSSLSLVIIDEQ 399 Query 84 RRL---------EAGMKLGWHPYHF 99 R E G++ G+HP+ Sbjct 400 HRFGVHQRLALWEKGLQQGFHPHQL 424 >gi|345430562|ref|YP_004823684.1| ATP-dependent DNA helicase [Haemophilus parainfluenzae T3T1] gi|301156627|emb|CBW16098.1| ATP-dependent DNA helicase [Haemophilus parainfluenzae T3T1] Length=693 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 24/84 (29%), Positives = 39/84 (47%), Gaps = 13/84 (15%) Query 25 GRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQR 84 G + GW A + + RQ +LE I+ +MV +H + + E A L++ + DEQ Sbjct 345 GIEVGWLA----GKVKGKARQTELEKIKSGAVQMVVGTHALFQEEVEFADLALVIIDEQH 400 Query 85 RL---------EAGMKLGWHPYHF 99 R E G K G++P+ Sbjct 401 RFGVHQRLMLREKGEKAGFYPHQL 424 >gi|342904871|ref|ZP_08726667.1| ATP-dependent DNA helicase recG [Haemophilus haemolyticus M21621] gi|341952327|gb|EGT78857.1| ATP-dependent DNA helicase recG [Haemophilus haemolyticus M21621] Length=693 Score = 38.1 bits (87), Expect = 0.48, Method: Compositional matrix adjust. Identities = 23/84 (28%), Positives = 39/84 (47%), Gaps = 13/84 (15%) Query 25 GRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQR 84 G + GW A + + RQ +LE I+ +MV +H + + E + L++ + DEQ Sbjct 345 GIEVGWLA----GKVKGKSRQAELEKIKTGVVQMVVGTHALFQEEVEFSDLALVIIDEQH 400 Query 85 RL---------EAGMKLGWHPYHF 99 R E G K G++P+ Sbjct 401 RFGVHQRLMLREKGEKAGFYPHQL 424 >gi|301170495|emb|CBW30102.1| ATP-dependent DNA helicase [Haemophilus influenzae 10810] Length=693 Score = 37.7 bits (86), Expect = 0.63, Method: Compositional matrix adjust. Identities = 23/84 (28%), Positives = 39/84 (47%), Gaps = 13/84 (15%) Query 25 GRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQR 84 G + GW A + + RQ +LE I+ +MV +H + + E + L++ + DEQ Sbjct 345 GIEVGWLA----GKVKGKSRQAELEKIKTGTVQMVVGTHALFQEEVEFSDLALVIIDEQH 400 Query 85 RL---------EAGMKLGWHPYHF 99 R E G K G++P+ Sbjct 401 RFGVHQRLMLREKGEKAGFYPHQL 424 >gi|148825722|ref|YP_001290475.1| ATP-dependent DNA helicase RecG [Haemophilus influenzae PittEE] gi|229846915|ref|ZP_04467021.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae 7P49H1] gi|148715882|gb|ABQ98092.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae PittEE] gi|229809999|gb|EEP45719.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae 7P49H1] Length=693 Score = 37.7 bits (86), Expect = 0.65, Method: Compositional matrix adjust. Identities = 23/84 (28%), Positives = 39/84 (47%), Gaps = 13/84 (15%) Query 25 GRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQR 84 G + GW A + + RQ +LE I+ +MV +H + + E + L++ + DEQ Sbjct 345 GIEVGWLA----GKVKGKSRQAELEKIKTGTVQMVVGTHALFQEEVEFSDLALVIIDEQH 400 Query 85 RL---------EAGMKLGWHPYHF 99 R E G K G++P+ Sbjct 401 RFGVHQRLMLREKGEKAGFYPHQL 424 >gi|293391661|ref|ZP_06635995.1| ATP-dependent DNA helicase RecG [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952195|gb|EFE02314.1| ATP-dependent DNA helicase RecG [Aggregatibacter actinomycetemcomitans D7S-1] Length=693 Score = 37.4 bits (85), Expect = 0.73, Method: Compositional matrix adjust. Identities = 25/85 (30%), Positives = 38/85 (45%), Gaps = 13/85 (15%) Query 24 VGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQ 83 +G Q GW A +QR A +LE I+ +MV +H + + E LS+ + DEQ Sbjct 344 IGIQVGWLAGKVKGKQRVA----ELEKIKSGAVQMVVGTHALFQEDVEFHRLSLVIVDEQ 399 Query 84 RRL---------EAGMKLGWHPYHF 99 R E G + G +P+ Sbjct 400 HRFGVHQRLMLREKGNQAGVYPHQL 424 >gi|221214464|ref|ZP_03587435.1| ATP-dependent DNA helicase RecG [Burkholderia multivorans CGD1] gi|221165721|gb|EED98196.1| ATP-dependent DNA helicase RecG [Burkholderia multivorans CGD1] Length=791 Score = 37.4 bits (85), Expect = 0.74, Method: Compositional matrix adjust. Identities = 23/69 (34%), Positives = 34/69 (50%), Gaps = 4/69 (5%) Query 24 VGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQ 83 +G W A A+++RA +EA A++V +H I DT E A L + + DEQ Sbjct 438 LGVSVAWLAGSLKAKEKRAA----IEAAALGTAQLVIGTHAIIQDTVEFARLGLVIVDEQ 493 Query 84 RRLEAGMKL 92 R G +L Sbjct 494 HRFGVGQRL 502 >gi|145633450|ref|ZP_01789180.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae 3655] gi|144986013|gb|EDJ92615.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae 3655] Length=693 Score = 37.4 bits (85), Expect = 0.79, Method: Compositional matrix adjust. Identities = 23/84 (28%), Positives = 39/84 (47%), Gaps = 13/84 (15%) Query 25 GRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQR 84 G + GW A + + RQ +LE I+ +MV +H + + E + L++ + DEQ Sbjct 345 GIEVGWLA----GKVKGKSRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQH 400 Query 85 RL---------EAGMKLGWHPYHF 99 R E G K G++P+ Sbjct 401 RFGVNQRLMLREKGEKAGFYPHQL 424 >gi|148827157|ref|YP_001291910.1| ATP-dependent DNA helicase RecG [Haemophilus influenzae PittGG] gi|148718399|gb|ABQ99526.1| ATP-dependent DNA helicase [Haemophilus influenzae PittGG] Length=693 Score = 37.4 bits (85), Expect = 0.80, Method: Compositional matrix adjust. Identities = 23/84 (28%), Positives = 39/84 (47%), Gaps = 13/84 (15%) Query 25 GRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQR 84 G + GW A + + RQ +LE I+ +MV +H + + E + L++ + DEQ Sbjct 345 GIEVGWLA----GKVKGKSRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQH 400 Query 85 RL---------EAGMKLGWHPYHF 99 R E G K G++P+ Sbjct 401 RFGVHQRLMLREKGEKAGFYPHQL 424 >gi|145630714|ref|ZP_01786493.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae R3021] gi|144983840|gb|EDJ91290.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae R3021] Length=693 Score = 37.4 bits (85), Expect = 0.80, Method: Compositional matrix adjust. Identities = 23/84 (28%), Positives = 39/84 (47%), Gaps = 13/84 (15%) Query 25 GRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQR 84 G + GW A + + RQ +LE I+ +MV +H + + E + L++ + DEQ Sbjct 345 GIEVGWLA----GKVKGKSRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQH 400 Query 85 RL---------EAGMKLGWHPYHF 99 R E G K G++P+ Sbjct 401 RFGVHQRLMLREKGEKAGFYPHQL 424 >gi|229845419|ref|ZP_04465549.1| ATP-dependent DNA helicase [Haemophilus influenzae 6P18H1] gi|229811615|gb|EEP47314.1| ATP-dependent DNA helicase [Haemophilus influenzae 6P18H1] Length=693 Score = 37.4 bits (85), Expect = 0.80, Method: Compositional matrix adjust. Identities = 23/84 (28%), Positives = 39/84 (47%), Gaps = 13/84 (15%) Query 25 GRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQR 84 G + GW A + + RQ +LE I+ +MV +H + + E + L++ + DEQ Sbjct 345 GIEVGWLA----GKVKGKSRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQH 400 Query 85 RL---------EAGMKLGWHPYHF 99 R E G K G++P+ Sbjct 401 RFGVNQRLMLREKGEKAGFYPHQL 424 >gi|341949580|gb|EGT76183.1| ATP-dependent DNA helicase recG [Haemophilus haemolyticus M21127] Length=693 Score = 37.4 bits (85), Expect = 0.82, Method: Compositional matrix adjust. Identities = 23/84 (28%), Positives = 39/84 (47%), Gaps = 13/84 (15%) Query 25 GRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQR 84 G + GW A + + RQ +LE I+ +MV +H + + E + L++ + DEQ Sbjct 345 GIEVGWLA----GKVKGKSRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQH 400 Query 85 RL---------EAGMKLGWHPYHF 99 R E G K G++P+ Sbjct 401 RFGVHQRLMLREKGEKAGFYPHQL 424 >gi|16273626|ref|NP_439884.1| ATP-dependent DNA helicase RecG [Haemophilus influenzae Rd KW20] gi|260580699|ref|ZP_05848526.1| ATP-dependent DNA helicase RecG [Haemophilus influenzae RdAW] gi|1172894|sp|P43809.1|RECG_HAEIN RecName: Full=ATP-dependent DNA helicase recG gi|1574599|gb|AAC23387.1| ATP-dependent DNA helicase (recG) [Haemophilus influenzae Rd KW20] gi|260092761|gb|EEW76697.1| ATP-dependent DNA helicase RecG [Haemophilus influenzae RdAW] Length=693 Score = 37.4 bits (85), Expect = 0.82, Method: Compositional matrix adjust. Identities = 23/84 (28%), Positives = 39/84 (47%), Gaps = 13/84 (15%) Query 25 GRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQR 84 G + GW A + + RQ +LE I+ +MV +H + + E + L++ + DEQ Sbjct 345 GIEVGWLA----GKVKGKSRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQH 400 Query 85 RL---------EAGMKLGWHPYHF 99 R E G K G++P+ Sbjct 401 RFGVHQRLMLREKGEKAGFYPHQL 424 >gi|145639715|ref|ZP_01795318.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae PittII] gi|145271272|gb|EDK11186.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae PittII] gi|309750684|gb|ADO80668.1| ATP-dependent DNA helicase [Haemophilus influenzae R2866] Length=693 Score = 37.4 bits (85), Expect = 0.83, Method: Compositional matrix adjust. Identities = 23/84 (28%), Positives = 39/84 (47%), Gaps = 13/84 (15%) Query 25 GRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQR 84 G + GW A + + RQ +LE I+ +MV +H + + E + L++ + DEQ Sbjct 345 GIEVGWLA----GKVKGKSRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQH 400 Query 85 RL---------EAGMKLGWHPYHF 99 R E G K G++P+ Sbjct 401 RFGVHQRLMLREKGEKAGFYPHQL 424 >gi|319776734|ref|YP_004139222.1| ATP-dependent DNA helicase [Haemophilus influenzae F3047] gi|329123155|ref|ZP_08251725.1| DNA helicase RecG [Haemophilus aegyptius ATCC 11116] gi|317451325|emb|CBY87563.1| ATP-dependent DNA helicase [Haemophilus influenzae F3047] gi|327471710|gb|EGF17152.1| DNA helicase RecG [Haemophilus aegyptius ATCC 11116] Length=693 Score = 37.4 bits (85), Expect = 0.84, Method: Compositional matrix adjust. Identities = 23/84 (28%), Positives = 39/84 (47%), Gaps = 13/84 (15%) Query 25 GRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQR 84 G + GW A + + RQ +LE I+ +MV +H + + E + L++ + DEQ Sbjct 345 GIEVGWLA----GKVKGKSRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQH 400 Query 85 RL---------EAGMKLGWHPYHF 99 R E G K G++P+ Sbjct 401 RFGVHQRLMLREKGEKAGFYPHQL 424 >gi|341952565|gb|EGT79090.1| ATP-dependent DNA helicase recG [Haemophilus haemolyticus M21639] Length=693 Score = 37.4 bits (85), Expect = 0.84, Method: Compositional matrix adjust. Identities = 23/84 (28%), Positives = 39/84 (47%), Gaps = 13/84 (15%) Query 25 GRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQR 84 G + GW A + + RQ +LE I+ +MV +H + + E + L++ + DEQ Sbjct 345 GIEVGWLA----GKVKGKSRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQH 400 Query 85 RL---------EAGMKLGWHPYHF 99 R E G K G++P+ Sbjct 401 RFGVHQRLMLREKGEKAGFYPHQL 424 >gi|146309754|ref|YP_001174828.1| ATP-dependent DNA helicase RecG [Enterobacter sp. 638] gi|145316630|gb|ABP58777.1| ATP-dependent DNA helicase RecG [Enterobacter sp. 638] Length=693 Score = 37.4 bits (85), Expect = 0.85, Method: Compositional matrix adjust. Identities = 23/85 (28%), Positives = 39/85 (46%), Gaps = 13/85 (15%) Query 24 VGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQ 83 +G + GW A + R AQ+ EAI +M+ +H I + + L++ + DEQ Sbjct 344 LGVEVGWLAGKQKGKARIAQQ----EAIASGLVQMIVGTHAIFQEQVKFKGLALVIIDEQ 399 Query 84 RRL---------EAGMKLGWHPYHF 99 R E G++ G+HP+ Sbjct 400 HRFGVHQRLALWEKGLQQGFHPHQL 424 >gi|341950798|gb|EGT77385.1| ATP-dependent DNA helicase recG [Haemophilus haemolyticus M19501] Length=693 Score = 37.0 bits (84), Expect = 0.86, Method: Compositional matrix adjust. Identities = 23/84 (28%), Positives = 39/84 (47%), Gaps = 13/84 (15%) Query 25 GRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQR 84 G + GW A + + RQ +LE I+ +MV +H + + E + L++ + DEQ Sbjct 345 GIEVGWLA----GKVKGKSRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQH 400 Query 85 RL---------EAGMKLGWHPYHF 99 R E G K G++P+ Sbjct 401 RFGVHQRLMLREKGEKAGFYPHQL 424 >gi|145636800|ref|ZP_01792466.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae PittHH] gi|145270098|gb|EDK10035.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae PittHH] Length=693 Score = 37.0 bits (84), Expect = 0.86, Method: Compositional matrix adjust. Identities = 23/84 (28%), Positives = 39/84 (47%), Gaps = 13/84 (15%) Query 25 GRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQR 84 G + GW A + + RQ +LE I+ +MV +H + + E + L++ + DEQ Sbjct 345 GIEVGWLA----GKVKGKSRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQH 400 Query 85 RL---------EAGMKLGWHPYHF 99 R E G K G++P+ Sbjct 401 RFGVHQRLMLREKGEKAGFYPHQL 424 >gi|145641878|ref|ZP_01797453.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae R3021] gi|145273500|gb|EDK13371.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae 22.4-21] Length=390 Score = 37.0 bits (84), Expect = 0.89, Method: Compositional matrix adjust. Identities = 23/84 (28%), Positives = 39/84 (47%), Gaps = 13/84 (15%) Query 25 GRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQR 84 G + GW A + + RQ +LE I+ +MV +H + + E + L++ + DEQ Sbjct 42 GIEVGWLA----GKVKGKSRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQH 97 Query 85 RL---------EAGMKLGWHPYHF 99 R E G K G++P+ Sbjct 98 RFGVHQRLMLREKGEKAGFYPHQL 121 >gi|296100479|ref|YP_003610625.1| ATP-dependent DNA helicase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295054938|gb|ADF59676.1| ATP-dependent DNA helicase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length=693 Score = 37.0 bits (84), Expect = 0.92, Method: Compositional matrix adjust. Identities = 23/85 (28%), Positives = 40/85 (48%), Gaps = 13/85 (15%) Query 24 VGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQ 83 +G + GW A + R AQ+ +AI R +M+ +H I + + L++ + DEQ Sbjct 344 LGIEVGWLAGKQKGKARLAQQ----DAIARGEVQMIVGTHAIFQEQVQFNGLALVIIDEQ 399 Query 84 RRL---------EAGMKLGWHPYHF 99 R E G++ G+HP+ Sbjct 400 HRFGVHQRLALWEKGLQQGFHPHQL 424 >gi|238755589|ref|ZP_04616926.1| ATP-dependent DNA helicase recG [Yersinia ruckeri ATCC 29473] gi|238706189|gb|EEP98569.1| ATP-dependent DNA helicase recG [Yersinia ruckeri ATCC 29473] Length=693 Score = 37.0 bits (84), Expect = 0.92, Method: Compositional matrix adjust. Identities = 25/85 (30%), Positives = 38/85 (45%), Gaps = 13/85 (15%) Query 24 VGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQ 83 +G + GW A + R AQ+ EAI MV +H I D + + L++ + DEQ Sbjct 344 LGLEVGWLAGKQKGKARIAQQ----EAIASGKVSMVVGTHAIFQDQVQFSGLALVIIDEQ 399 Query 84 RRL---------EAGMKLGWHPYHF 99 R E G + G+HP+ Sbjct 400 HRFGVHQRLALWEKGEEQGFHPHQL 424 >gi|261341740|ref|ZP_05969598.1| hypothetical protein ENTCAN_08218 [Enterobacter cancerogenus ATCC 35316] gi|288316107|gb|EFC55045.1| ATP-dependent DNA helicase RecG [Enterobacter cancerogenus ATCC 35316] Length=693 Score = 37.0 bits (84), Expect = 0.92, Method: Compositional matrix adjust. Identities = 23/85 (28%), Positives = 39/85 (46%), Gaps = 13/85 (15%) Query 24 VGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQ 83 +G + GW A + R AQ+ EAI +M+ +H I + + L++ + DEQ Sbjct 344 LGVEVGWLAGKQKGKARLAQQ----EAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQ 399 Query 84 RRL---------EAGMKLGWHPYHF 99 R E G++ G+HP+ Sbjct 400 HRFGVHQRLALWEKGLQQGYHPHQL 424 >gi|145629154|ref|ZP_01784953.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae 22.1-21] gi|144978657|gb|EDJ88380.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae 22.1-21] Length=569 Score = 37.0 bits (84), Expect = 0.93, Method: Compositional matrix adjust. Identities = 23/84 (28%), Positives = 39/84 (47%), Gaps = 13/84 (15%) Query 25 GRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQR 84 G + GW A + + RQ +LE I+ +MV +H + + E + L++ + DEQ Sbjct 221 GIEVGWLA----GKVKGKSRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQH 276 Query 85 RL---------EAGMKLGWHPYHF 99 R E G K G++P+ Sbjct 277 RFGVHQRLMLREKGEKAGFYPHQL 300 >gi|325577828|ref|ZP_08148103.1| DNA helicase RecG [Haemophilus parainfluenzae ATCC 33392] gi|325160573|gb|EGC72699.1| DNA helicase RecG [Haemophilus parainfluenzae ATCC 33392] Length=693 Score = 37.0 bits (84), Expect = 0.95, Method: Compositional matrix adjust. Identities = 24/84 (29%), Positives = 38/84 (46%), Gaps = 13/84 (15%) Query 25 GRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQR 84 G GW A + + RQ +LE I+ +MV +H + + E A L++ + DEQ Sbjct 345 GIDVGWLA----GKVKGKARQAELEKIKSGAVQMVVGTHALFQEEVEFADLALVIIDEQH 400 Query 85 RL---------EAGMKLGWHPYHF 99 R E G K G++P+ Sbjct 401 RFGVHQRLMLREKGEKAGFYPHQL 424 >gi|270316155|gb|EFA28139.1| ATP-dependent DNA helicase recG [Haemophilus influenzae HK1212] Length=163 Score = 37.0 bits (84), Expect = 1.00, Method: Compositional matrix adjust. Identities = 23/84 (28%), Positives = 39/84 (47%), Gaps = 13/84 (15%) Query 25 GRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQR 84 G + GW A + + RQ +LE I+ +MV +H + + E + L++ + DEQ Sbjct 31 GIEVGWLA----GKVKGKSRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQH 86 Query 85 RL---------EAGMKLGWHPYHF 99 R E G K G++P+ Sbjct 87 RFGVHQRLMLREKGEKAGFYPHQL 110 >gi|341956366|gb|EGT82794.1| ATP-dependent DNA helicase recG [Haemophilus haemolyticus M19107] Length=693 Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust. Identities = 23/84 (28%), Positives = 39/84 (47%), Gaps = 13/84 (15%) Query 25 GRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQR 84 G + GW A + + RQ +LE I+ +MV +H + + E + L++ + DEQ Sbjct 345 GIEVGWLA----GKVKGKLRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQH 400 Query 85 RL---------EAGMKLGWHPYHF 99 R E G K G++P+ Sbjct 401 RFGVHQRLMLREKGEKAGFYPHQL 424 >gi|326565924|gb|EGE16085.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis 103P14B1] gi|326575426|gb|EGE25351.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis 101P30B1] gi|326577957|gb|EGE27821.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis O35E] Length=698 Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/63 (34%), Positives = 33/63 (53%), Gaps = 4/63 (6%) Query 24 VGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQ 83 +G GW A +A++R A L+AIR+ ++V +H + DT A L + + DEQ Sbjct 350 LGIGVGWLAGKQTAKERTAA----LDAIRKNQVQIVVGTHALFSDTVVFAKLGLVIIDEQ 405 Query 84 RRL 86 R Sbjct 406 HRF 408 >gi|334126222|ref|ZP_08500201.1| DNA helicase RecG [Enterobacter hormaechei ATCC 49162] gi|333385882|gb|EGK57108.1| DNA helicase RecG [Enterobacter hormaechei ATCC 49162] Length=693 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 23/85 (28%), Positives = 39/85 (46%), Gaps = 13/85 (15%) Query 24 VGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQ 83 +G + GW A + R AQ+ EAI +M+ +H I + + L++ + DEQ Sbjct 344 LGIEVGWLAGKQKGKARLAQQ----EAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQ 399 Query 84 RRL---------EAGMKLGWHPYHF 99 R E G++ G+HP+ Sbjct 400 HRFGVHQRLALWEKGLQQGFHPHQL 424 >gi|296112326|ref|YP_003626264.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis RH4] gi|295920020|gb|ADG60371.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis RH4] gi|326561837|gb|EGE12172.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis 7169] gi|326563383|gb|EGE13648.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis 12P80B1] gi|326568942|gb|EGE19011.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis BC1] Length=698 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/63 (34%), Positives = 33/63 (53%), Gaps = 4/63 (6%) Query 24 VGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQ 83 +G GW A +A++R A L+AIR+ ++V +H + DT A L + + DEQ Sbjct 350 LGIGVGWLAGKQTAKERTAA----LDAIRKNQVQIVVGTHALFSDTVVFAKLGLVIIDEQ 405 Query 84 RRL 86 R Sbjct 406 HRF 408 >gi|295095240|emb|CBK84330.1| ATP-dependent DNA helicase RecG [Enterobacter cloacae subsp. cloacae NCTC 9394] Length=693 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 23/85 (28%), Positives = 39/85 (46%), Gaps = 13/85 (15%) Query 24 VGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQ 83 +G + GW A + R AQ+ EAI +M+ +H I + + L++ + DEQ Sbjct 344 LGIEVGWLAGKQKGKARLAQQ----EAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQ 399 Query 84 RRL---------EAGMKLGWHPYHF 99 R E G++ G+HP+ Sbjct 400 HRFGVHQRLALWEKGLQQGFHPHQL 424 >gi|326576486|gb|EGE26394.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis CO72] Length=698 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/63 (34%), Positives = 33/63 (53%), Gaps = 4/63 (6%) Query 24 VGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQ 83 +G GW A +A++R A L+AIR+ ++V +H + DT A L + + DEQ Sbjct 350 LGIGVGWLAGKQTAKERTAA----LDAIRKNQVQIVVGTHALFSDTVVFAKLGLVIIDEQ 405 Query 84 RRL 86 R Sbjct 406 HRF 408 >gi|326571914|gb|EGE21919.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis BC8] Length=698 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/63 (34%), Positives = 33/63 (53%), Gaps = 4/63 (6%) Query 24 VGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQ 83 +G GW A +A++R A L+AIR+ ++V +H + DT A L + + DEQ Sbjct 350 LGIGVGWLAGKQTAKERTAA----LDAIRKNQVQIVVGTHALFSDTVVFAKLGLVIIDEQ 405 Query 84 RRL 86 R Sbjct 406 HRF 408 >gi|326563268|gb|EGE13535.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis 46P47B1] gi|326569240|gb|EGE19301.1| ATP-dependent DNA helicase RecG [Moraxella catarrhalis BC7] Length=698 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/63 (34%), Positives = 33/63 (53%), Gaps = 4/63 (6%) Query 24 VGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQ 83 +G GW A +A++R A L+AIR+ ++V +H + DT A L + + DEQ Sbjct 350 LGIGVGWLAGKQTAKERTAA----LDAIRKNQVQIVVGTHALFSDTVVFAKLGLVIIDEQ 405 Query 84 RRL 86 R Sbjct 406 HRF 408 >gi|261868130|ref|YP_003256052.1| ATP-dependent DNA helicase RecG [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413462|gb|ACX82833.1| ATP-dependent DNA helicase RecG [Aggregatibacter actinomycetemcomitans D11S-1] Length=693 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 25/85 (30%), Positives = 38/85 (45%), Gaps = 13/85 (15%) Query 24 VGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQ 83 +G Q GW A +QR A +LE I+ +MV +H + + E LS+ + DEQ Sbjct 344 LGIQVGWLAGKVKGKQRVA----ELEKIKSGAVQMVVGTHALFQEEVEFHRLSLVIVDEQ 399 Query 84 RRL---------EAGMKLGWHPYHF 99 R E G + G +P+ Sbjct 400 HRFGVHQRLMLREKGNQAGVYPHQL 424 >gi|300725269|ref|YP_003714598.1| DNA helicase [Xenorhabdus nematophila ATCC 19061] gi|297631815|emb|CBJ92536.1| DNA helicase, ATP-dependent resolution of Holliday junctions, branch migration [Xenorhabdus nematophila ATCC 19061] Length=693 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/85 (29%), Positives = 39/85 (46%), Gaps = 13/85 (15%) Query 24 VGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQ 83 +G Q GW A + R+AQ+ EAI M+ +H + + + A L++ + DEQ Sbjct 344 LGMQVGWLAGKQKGKARQAQQ----EAIASGQVNMIIGTHAMFQEQVKFAGLALVIIDEQ 399 Query 84 RRL---------EAGMKLGWHPYHF 99 R E G + G+HP+ Sbjct 400 HRFGVHQRLALWEKGREQGFHPHQL 424 >gi|290473314|ref|YP_003466180.1| DNA helicase, ATP-dependent resolution of Holliday junctions, branch migration [Xenorhabdus bovienii SS-2004] gi|289172613|emb|CBJ79382.1| DNA helicase, ATP-dependent resolution of Holliday junctions, branch migration [Xenorhabdus bovienii SS-2004] Length=693 Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/85 (29%), Positives = 38/85 (45%), Gaps = 13/85 (15%) Query 24 VGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQ 83 +G Q GW A + R+AQ+ EAI MV +H + + + L++ + DEQ Sbjct 344 LGIQVGWLAGKQKGKARQAQQ----EAIANGQVSMVVGTHAMFQEQVRFSGLALVIIDEQ 399 Query 84 RRL---------EAGMKLGWHPYHF 99 R E G + G+HP+ Sbjct 400 HRFGVHQRLALWEKGCEQGFHPHQL 424 >gi|204928489|ref|ZP_03219688.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204321922|gb|EDZ07120.1| ATP-dependent DNA helicase RecG [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length=693 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 23/85 (28%), Positives = 39/85 (46%), Gaps = 13/85 (15%) Query 24 VGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQ 83 +G + GW A + R+AQ+ EAI +M+ +H I + + L++ + DEQ Sbjct 344 LGVEVGWLAGKQKGKARQAQQ----EAIANGQVQMIVGTHAIFQEQVQFNGLALVIIDEQ 399 Query 84 RRL---------EAGMKLGWHPYHF 99 R E G + G+HP+ Sbjct 400 HRFGVHQRLALWEKGQQQGFHPHQL 424 >gi|36783701|emb|CAE12554.1| ATP-dependent DNA helicase [Photorhabdus luminescens subsp. laumondii TTO1] Length=703 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 23/85 (28%), Positives = 39/85 (46%), Gaps = 13/85 (15%) Query 24 VGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQ 83 +G Q GW A +Q+ RQ+ EAI M+ +H + + + + L++ + DEQ Sbjct 354 LGIQVGWLA----GKQKGKARQKQQEAIANGQVAMIVGTHAMFQEQVKFSGLALVIIDEQ 409 Query 84 RRL---------EAGMKLGWHPYHF 99 R E G + G+HP+ Sbjct 410 HRFGVHQRLALWEKGREQGFHPHQL 434 >gi|15602784|ref|NP_245856.1| hypothetical protein PM0919 [Pasteurella multocida subsp. multocida str. Pm70] gi|20139711|sp|Q9CMB4.1|RECG_PASMU RecName: Full=ATP-dependent DNA helicase recG gi|12721238|gb|AAK03003.1| RecG [Pasteurella multocida subsp. multocida str. Pm70] Length=693 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 24/82 (30%), Positives = 38/82 (47%), Gaps = 9/82 (10%) Query 24 VGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQ 83 +G + GW A + + RQ +LE IR +MV +H + D E + L++ + DEQ Sbjct 344 LGIEVGWLA----GKVKGKARQTELEKIRTGQVQMVVGTHALFQDEVEFSDLALVIVDEQ 399 Query 84 RRLEAGMKL-----GWHPYHFP 100 R +L G H+P Sbjct 400 HRFGVHQRLMLREKGKQADHYP 421 >gi|85060202|ref|YP_455904.1| ATP-dependent DNA helicase RecG [Sodalis glossinidius str. 'morsitans'] gi|84780722|dbj|BAE75499.1| ATP-dependent DNA helicase [Sodalis glossinidius str. 'morsitans'] Length=694 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 24/85 (29%), Positives = 38/85 (45%), Gaps = 13/85 (15%) Query 24 VGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQ 83 +G + GW A + R+AQ+ EAI M+ +H I + A L++ + DEQ Sbjct 345 LGIEVGWLAGKQKGKARQAQQ----EAISDGRVSMIVGTHAIFQEQVRFAGLALVIIDEQ 400 Query 84 RRL---------EAGMKLGWHPYHF 99 R E G+ G+HP+ Sbjct 401 HRFGVHQRLALWEKGLVQGFHPHQL 425 Lambda K H 0.317 0.131 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 130484177216 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40