BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2654c

Length=81
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609791|ref|NP_217170.1|  phiRv2 prophage protein [Mycobacter...   143    9e-33
gi|254365318|ref|ZP_04981363.1|  hypothetical phiRv2 prophage pro...   109    1e-22
gi|307085350|ref|ZP_07494463.1|  hypothetical protein TMLG_04092 ...   102    3e-20
gi|306968707|ref|ZP_07481368.1|  hypothetical protein TMIG_03984 ...  60.8    7e-08
gi|182678372|ref|YP_001832518.1|  ribonuclease D [Beijerinckia in...  33.9    8.0  


>gi|15609791|ref|NP_217170.1| phiRv2 prophage protein [Mycobacterium tuberculosis H37Rv]
 gi|15842194|ref|NP_337231.1| hypothetical protein MT2731 [Mycobacterium tuberculosis CDC1551]
 gi|148662496|ref|YP_001284019.1| putative phiRv2 prophage protein [Mycobacterium tuberculosis 
H37Ra]
 39 more sequence titles
 Length=81

 Score =  143 bits (360),  Expect = 9e-33, Method: Compositional matrix adjust.
 Identities = 81/81 (100%), Positives = 81/81 (100%), Gaps = 0/81 (0%)

Query  1   MSGHALAARTLLAAADELVGGPPVEASAAALAGDAAGAWRTAAVELARALVRAVAESHGV  60
           MSGHALAARTLLAAADELVGGPPVEASAAALAGDAAGAWRTAAVELARALVRAVAESHGV
Sbjct  1   MSGHALAARTLLAAADELVGGPPVEASAAALAGDAAGAWRTAAVELARALVRAVAESHGV  60

Query  61  AAVLFAATAAAAAAVDRGDPP  81
           AAVLFAATAAAAAAVDRGDPP
Sbjct  61  AAVLFAATAAAAAAVDRGDPP  81


>gi|254365318|ref|ZP_04981363.1| hypothetical phiRv2 prophage protein [Mycobacterium tuberculosis 
str. Haarlem]
 gi|134150831|gb|EBA42876.1| hypothetical phiRv2 prophage protein [Mycobacterium tuberculosis 
str. Haarlem]
Length=78

 Score =  109 bits (273),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 62/62 (100%), Positives = 62/62 (100%), Gaps = 0/62 (0%)

Query  1   MSGHALAARTLLAAADELVGGPPVEASAAALAGDAAGAWRTAAVELARALVRAVAESHGV  60
           MSGHALAARTLLAAADELVGGPPVEASAAALAGDAAGAWRTAAVELARALVRAVAESHGV
Sbjct  1   MSGHALAARTLLAAADELVGGPPVEASAAALAGDAAGAWRTAAVELARALVRAVAESHGV  60

Query  61  AA  62
           AA
Sbjct  61  AA  62


>gi|307085350|ref|ZP_07494463.1| hypothetical protein TMLG_04092 [Mycobacterium tuberculosis SUMu012]
 gi|308365108|gb|EFP53959.1| hypothetical protein TMLG_04092 [Mycobacterium tuberculosis SUMu012]
Length=57

 Score =  102 bits (253),  Expect = 3e-20, Method: Compositional matrix adjust.
 Identities = 57/57 (100%), Positives = 57/57 (100%), Gaps = 0/57 (0%)

Query  1   MSGHALAARTLLAAADELVGGPPVEASAAALAGDAAGAWRTAAVELARALVRAVAES  57
           MSGHALAARTLLAAADELVGGPPVEASAAALAGDAAGAWRTAAVELARALVRAVAES
Sbjct  1   MSGHALAARTLLAAADELVGGPPVEASAAALAGDAAGAWRTAAVELARALVRAVAES  57


>gi|306968707|ref|ZP_07481368.1| hypothetical protein TMIG_03984 [Mycobacterium tuberculosis SUMu009]
 gi|308353735|gb|EFP42586.1| hypothetical protein TMIG_03984 [Mycobacterium tuberculosis SUMu009]
Length=48

 Score = 60.8 bits (146),  Expect = 7e-08, Method: Compositional matrix adjust.
 Identities = 48/48 (100%), Positives = 48/48 (100%), Gaps = 0/48 (0%)

Query  34  DAAGAWRTAAVELARALVRAVAESHGVAAVLFAATAAAAAAVDRGDPP  81
           DAAGAWRTAAVELARALVRAVAESHGVAAVLFAATAAAAAAVDRGDPP
Sbjct  1   DAAGAWRTAAVELARALVRAVAESHGVAAVLFAATAAAAAAVDRGDPP  48


>gi|182678372|ref|YP_001832518.1| ribonuclease D [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182634255|gb|ACB95029.1| ribonuclease D [Beijerinckia indica subsp. indica ATCC 9039]
Length=388

 Score = 33.9 bits (76),  Expect = 8.0, Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 25/42 (60%), Gaps = 2/42 (4%)

Query  42   AAVELARALVRAVAESHGVAAVLFAAT--AAAAAAVDRGDPP  81
            A VEL + L+R V+ESHGVA+ L A      A AA D  D P
Sbjct  304  ATVELLKVLLRQVSESHGVASKLIATVDDLEAIAADDEADVP  345



Lambda     K      H
   0.315    0.124    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128409240708


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40