BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2654c Length=81 Score E Sequences producing significant alignments: (Bits) Value gi|15609791|ref|NP_217170.1| phiRv2 prophage protein [Mycobacter... 143 9e-33 gi|254365318|ref|ZP_04981363.1| hypothetical phiRv2 prophage pro... 109 1e-22 gi|307085350|ref|ZP_07494463.1| hypothetical protein TMLG_04092 ... 102 3e-20 gi|306968707|ref|ZP_07481368.1| hypothetical protein TMIG_03984 ... 60.8 7e-08 gi|182678372|ref|YP_001832518.1| ribonuclease D [Beijerinckia in... 33.9 8.0 >gi|15609791|ref|NP_217170.1| phiRv2 prophage protein [Mycobacterium tuberculosis H37Rv] gi|15842194|ref|NP_337231.1| hypothetical protein MT2731 [Mycobacterium tuberculosis CDC1551] gi|148662496|ref|YP_001284019.1| putative phiRv2 prophage protein [Mycobacterium tuberculosis H37Ra] 39 more sequence titlesLength=81 Score = 143 bits (360), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 81/81 (100%), Positives = 81/81 (100%), Gaps = 0/81 (0%) Query 1 MSGHALAARTLLAAADELVGGPPVEASAAALAGDAAGAWRTAAVELARALVRAVAESHGV 60 MSGHALAARTLLAAADELVGGPPVEASAAALAGDAAGAWRTAAVELARALVRAVAESHGV Sbjct 1 MSGHALAARTLLAAADELVGGPPVEASAAALAGDAAGAWRTAAVELARALVRAVAESHGV 60 Query 61 AAVLFAATAAAAAAVDRGDPP 81 AAVLFAATAAAAAAVDRGDPP Sbjct 61 AAVLFAATAAAAAAVDRGDPP 81 >gi|254365318|ref|ZP_04981363.1| hypothetical phiRv2 prophage protein [Mycobacterium tuberculosis str. Haarlem] gi|134150831|gb|EBA42876.1| hypothetical phiRv2 prophage protein [Mycobacterium tuberculosis str. Haarlem] Length=78 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 62/62 (100%), Positives = 62/62 (100%), Gaps = 0/62 (0%) Query 1 MSGHALAARTLLAAADELVGGPPVEASAAALAGDAAGAWRTAAVELARALVRAVAESHGV 60 MSGHALAARTLLAAADELVGGPPVEASAAALAGDAAGAWRTAAVELARALVRAVAESHGV Sbjct 1 MSGHALAARTLLAAADELVGGPPVEASAAALAGDAAGAWRTAAVELARALVRAVAESHGV 60 Query 61 AA 62 AA Sbjct 61 AA 62 >gi|307085350|ref|ZP_07494463.1| hypothetical protein TMLG_04092 [Mycobacterium tuberculosis SUMu012] gi|308365108|gb|EFP53959.1| hypothetical protein TMLG_04092 [Mycobacterium tuberculosis SUMu012] Length=57 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 57/57 (100%), Positives = 57/57 (100%), Gaps = 0/57 (0%) Query 1 MSGHALAARTLLAAADELVGGPPVEASAAALAGDAAGAWRTAAVELARALVRAVAES 57 MSGHALAARTLLAAADELVGGPPVEASAAALAGDAAGAWRTAAVELARALVRAVAES Sbjct 1 MSGHALAARTLLAAADELVGGPPVEASAAALAGDAAGAWRTAAVELARALVRAVAES 57 >gi|306968707|ref|ZP_07481368.1| hypothetical protein TMIG_03984 [Mycobacterium tuberculosis SUMu009] gi|308353735|gb|EFP42586.1| hypothetical protein TMIG_03984 [Mycobacterium tuberculosis SUMu009] Length=48 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/48 (100%), Positives = 48/48 (100%), Gaps = 0/48 (0%) Query 34 DAAGAWRTAAVELARALVRAVAESHGVAAVLFAATAAAAAAVDRGDPP 81 DAAGAWRTAAVELARALVRAVAESHGVAAVLFAATAAAAAAVDRGDPP Sbjct 1 DAAGAWRTAAVELARALVRAVAESHGVAAVLFAATAAAAAAVDRGDPP 48 >gi|182678372|ref|YP_001832518.1| ribonuclease D [Beijerinckia indica subsp. indica ATCC 9039] gi|182634255|gb|ACB95029.1| ribonuclease D [Beijerinckia indica subsp. indica ATCC 9039] Length=388 Score = 33.9 bits (76), Expect = 8.0, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 25/42 (60%), Gaps = 2/42 (4%) Query 42 AAVELARALVRAVAESHGVAAVLFAAT--AAAAAAVDRGDPP 81 A VEL + L+R V+ESHGVA+ L A A AA D D P Sbjct 304 ATVELLKVLLRQVSESHGVASKLIATVDDLEAIAADDEADVP 345 Lambda K H 0.315 0.124 0.344 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 128409240708 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40