BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2656c

Length=130
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609793|ref|NP_217172.1|  phiRv2 prophage protein [Mycobacter...   249    7e-65
gi|307080586|ref|ZP_07489756.1|  hypothetical protein TMKG_04052 ...   215    2e-54
gi|307085352|ref|ZP_07494465.1|  hypothetical protein TMLG_04094 ...   205    1e-51
gi|289570830|ref|ZP_06451057.1|  conserved hypothetical protein [...   205    2e-51
gi|15608721|ref|NP_216099.1|  phiRv1 phage protein [Mycobacterium...   200    6e-50
gi|308378979|ref|ZP_07668875.1|  LOW QUALITY PROTEIN: hypothetica...   198    2e-49
gi|31792769|ref|NP_855262.1|  phiRv1 phage protein [Mycobacterium...   197    4e-49
gi|167967172|ref|ZP_02549449.1|  hypothetical phiRv2 prophage pro...   181    3e-44
gi|289751281|ref|ZP_06510659.1|  phiRv1 phage protein [Mycobacter...   168    3e-40
gi|323717854|gb|EGB27044.1|  phiRv1 phage protein [Mycobacterium ...   129    1e-28
gi|307085353|ref|ZP_07494466.1|  hypothetical protein TMLG_04095 ...   120    5e-26
gi|120402459|ref|YP_952288.1|  hypothetical protein Mvan_1449 [My...  99.0    2e-19
gi|340628613|ref|YP_004747065.1|  hypothetical protein MCAN_36611...  88.2    4e-16
gi|315442141|ref|YP_004075020.1|  hypothetical protein Mspyr1_047...  84.7    4e-15
gi|41408864|ref|NP_961700.1|  hypothetical protein MAP2766c [Myco...  82.0    3e-14
gi|289751282|ref|ZP_06510660.1|  phiRv1 phage protein [Mycobacter...  78.2    4e-13
gi|342860959|ref|ZP_08717608.1|  phiRv2 phage protein [Mycobacter...  70.9    6e-11
gi|289753670|ref|ZP_06513048.1|  LOW QUALITY PROTEIN: phiRv1 phag...  68.2    3e-10
gi|308379736|ref|ZP_07669038.1|  hypothetical protein TMKG_04040 ...  67.0    9e-10
gi|343926143|ref|ZP_08765652.1|  hypothetical protein GOALK_056_0...  57.0    9e-07
gi|296141558|ref|YP_003648801.1|  hypothetical protein Tpau_3889 ...  44.7    0.005
gi|326527529|dbj|BAK08039.1|  predicted protein [Hordeum vulgare ...  37.0    0.85 
gi|47847716|dbj|BAD21495.1|  putative viroid symptom modulation p...  36.6    1.2  
gi|218190500|gb|EEC72927.1|  hypothetical protein OsI_06771 [Oryz...  36.2    1.7  
gi|222622616|gb|EEE56748.1|  hypothetical protein OsJ_06277 [Oryz...  36.2    1.7  
gi|307110353|gb|EFN58589.1|  hypothetical protein CHLNCDRAFT_1407...  34.7    4.9  


>gi|15609793|ref|NP_217172.1| phiRv2 prophage protein [Mycobacterium tuberculosis H37Rv]
 gi|15842196|ref|NP_337233.1| hypothetical protein MT2733 [Mycobacterium tuberculosis CDC1551]
 gi|148662498|ref|YP_001284021.1| putative phiRv2 prophage protein [Mycobacterium tuberculosis 
H37Ra]
 39 more sequence titles
 Length=130

 Score =  249 bits (637),  Expect = 7e-65, Method: Compositional matrix adjust.
 Identities = 130/130 (100%), Positives = 130/130 (100%), Gaps = 0/130 (0%)

Query  1    MTAVGGSPPTRRCPATEDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPMA  60
            MTAVGGSPPTRRCPATEDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPMA
Sbjct  1    MTAVGGSPPTRRCPATEDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPMA  60

Query  61   GTPAWCDLDDTDPVKWAAICDAARHWALRVETCQAASAEASRDVSAAADWPAVSREIQRR  120
            GTPAWCDLDDTDPVKWAAICDAARHWALRVETCQAASAEASRDVSAAADWPAVSREIQRR
Sbjct  61   GTPAWCDLDDTDPVKWAAICDAARHWALRVETCQAASAEASRDVSAAADWPAVSREIQRR  120

Query  121  RDAYIRRVVV  130
            RDAYIRRVVV
Sbjct  121  RDAYIRRVVV  130


>gi|307080586|ref|ZP_07489756.1| hypothetical protein TMKG_04052 [Mycobacterium tuberculosis SUMu011]
 gi|308361665|gb|EFP50516.1| hypothetical protein TMKG_04052 [Mycobacterium tuberculosis SUMu011]
Length=124

 Score =  215 bits (547),  Expect = 2e-54, Method: Compositional matrix adjust.
 Identities = 113/115 (99%), Positives = 113/115 (99%), Gaps = 0/115 (0%)

Query  16   TEDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPMAGTPAWCDLDDTDPVK  75
            T  RAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPMAGTPAWCDLDDTDPVK
Sbjct  10   TRTRAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPMAGTPAWCDLDDTDPVK  69

Query  76   WAAICDAARHWALRVETCQAASAEASRDVSAAADWPAVSREIQRRRDAYIRRVVV  130
            WAAICDAARHWALRVETCQAASAEASRDVSAAADWPAVSREIQRRRDAYIRRVVV
Sbjct  70   WAAICDAARHWALRVETCQAASAEASRDVSAAADWPAVSREIQRRRDAYIRRVVV  124


>gi|307085352|ref|ZP_07494465.1| hypothetical protein TMLG_04094 [Mycobacterium tuberculosis SUMu012]
 gi|308365110|gb|EFP53961.1| hypothetical protein TMLG_04094 [Mycobacterium tuberculosis SUMu012]
Length=107

 Score =  205 bits (522),  Expect = 1e-51, Method: Compositional matrix adjust.
 Identities = 107/107 (100%), Positives = 107/107 (100%), Gaps = 0/107 (0%)

Query  24   VATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPMAGTPAWCDLDDTDPVKWAAICDAA  83
            VATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPMAGTPAWCDLDDTDPVKWAAICDAA
Sbjct  1    VATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPMAGTPAWCDLDDTDPVKWAAICDAA  60

Query  84   RHWALRVETCQAASAEASRDVSAAADWPAVSREIQRRRDAYIRRVVV  130
            RHWALRVETCQAASAEASRDVSAAADWPAVSREIQRRRDAYIRRVVV
Sbjct  61   RHWALRVETCQAASAEASRDVSAAADWPAVSREIQRRRDAYIRRVVV  107


>gi|289570830|ref|ZP_06451057.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289544584|gb|EFD48232.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
Length=109

 Score =  205 bits (521),  Expect = 2e-51, Method: Compositional matrix adjust.
 Identities = 106/109 (98%), Positives = 106/109 (98%), Gaps = 0/109 (0%)

Query  1    MTAVGGSPPTRRCPATEDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPMA  60
            MTAVGGSPPTRRCPATEDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPMA
Sbjct  1    MTAVGGSPPTRRCPATEDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPMA  60

Query  61   GTPAWCDLDDTDPVKWAAICDAARHWALRVETCQAASAEASRDVSAAAD  109
            GTPAWCDLDDTDPVKWAAICDAARHWALRVETCQAASAEASRDV  A D
Sbjct  61   GTPAWCDLDDTDPVKWAAICDAARHWALRVETCQAASAEASRDVYVAGD  109


>gi|15608721|ref|NP_216099.1| phiRv1 phage protein [Mycobacterium tuberculosis H37Rv]
 gi|15843065|ref|NP_338102.1| hypothetical protein MT3573.2 [Mycobacterium tuberculosis CDC1551]
 gi|148661378|ref|YP_001282901.1| putative phiRv1 phage protein [Mycobacterium tuberculosis H37Ra]
 27 more sequence titles
 Length=132

 Score =  200 bits (508),  Expect = 6e-50, Method: Compositional matrix adjust.
 Identities = 107/131 (82%), Positives = 111/131 (85%), Gaps = 1/131 (0%)

Query  1    MTA-VGGSPPTRRCPATEDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPM  59
            MTA  GGSPPTRRCPATEDRAPATVATPSS DPTASRAVSWWSVHE+VAP L AA  WPM
Sbjct  1    MTAGAGGSPPTRRCPATEDRAPATVATPSSADPTASRAVSWWSVHEHVAPVLDAAGSWPM  60

Query  60   AGTPAWCDLDDTDPVKWAAICDAARHWALRVETCQAASAEASRDVSAAADWPAVSREIQR  119
            AGTPAW  LDD DP KWAAICDAARHWALRVETCQ A A+ASRDVSAAADWP ++REI R
Sbjct  61   AGTPAWRQLDDADPRKWAAICDAARHWALRVETCQEAMAQASRDVSAAADWPGIAREIVR  120

Query  120  RRDAYIRRVVV  130
            RR  YI R  V
Sbjct  121  RRGVYIPRAGV  131


>gi|308378979|ref|ZP_07668875.1| LOW QUALITY PROTEIN: hypothetical protein TMJG_03013 [Mycobacterium 
tuberculosis SUMu010]
 gi|308358731|gb|EFP47582.1| LOW QUALITY PROTEIN: hypothetical protein TMJG_03013 [Mycobacterium 
tuberculosis SUMu010]
Length=133

 Score =  198 bits (504),  Expect = 2e-49, Method: Compositional matrix adjust.
 Identities = 106/128 (83%), Positives = 110/128 (86%), Gaps = 1/128 (0%)

Query  1    MTA-VGGSPPTRRCPATEDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPM  59
            MTA  GGSPPTRRCPATEDRAPATVATPSS DPTASRAVSWWSVHE+VAP L AA  WPM
Sbjct  1    MTAGAGGSPPTRRCPATEDRAPATVATPSSADPTASRAVSWWSVHEHVAPVLDAAGSWPM  60

Query  60   AGTPAWCDLDDTDPVKWAAICDAARHWALRVETCQAASAEASRDVSAAADWPAVSREIQR  119
            AGTPAW  LDD DP KWAAICDAARHWALRVETCQ A A+ASRDVSAAADWP ++REI R
Sbjct  61   AGTPAWRQLDDADPRKWAAICDAARHWALRVETCQEAMAQASRDVSAAADWPGIAREIVR  120

Query  120  RRDAYIRR  127
            RR  YI R
Sbjct  121  RRGVYIPR  128


>gi|31792769|ref|NP_855262.1| phiRv1 phage protein [Mycobacterium bovis AF2122/97]
 gi|31618359|emb|CAD96277.1| Probable phiRv1 phage protein [Mycobacterium bovis AF2122/97]
Length=132

 Score =  197 bits (501),  Expect = 4e-49, Method: Compositional matrix adjust.
 Identities = 106/131 (81%), Positives = 110/131 (84%), Gaps = 1/131 (0%)

Query  1    MTA-VGGSPPTRRCPATEDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPM  59
            MTA  GGSPPTRRC ATEDRAPATVATPSS DPTASRAVSWWSVHE+VAP L AA  WPM
Sbjct  1    MTAGAGGSPPTRRCSATEDRAPATVATPSSADPTASRAVSWWSVHEHVAPVLDAAGSWPM  60

Query  60   AGTPAWCDLDDTDPVKWAAICDAARHWALRVETCQAASAEASRDVSAAADWPAVSREIQR  119
            AGTPAW  LDD DP KWAAICDAARHWALRVETCQ A A+ASRDVSAAADWP ++REI R
Sbjct  61   AGTPAWRQLDDADPRKWAAICDAARHWALRVETCQEAMAQASRDVSAAADWPGIAREIVR  120

Query  120  RRDAYIRRVVV  130
            RR  YI R  V
Sbjct  121  RRGVYIPRAGV  131


>gi|167967172|ref|ZP_02549449.1| hypothetical phiRv2 prophage protein [Mycobacterium tuberculosis 
H37Ra]
 gi|254551710|ref|ZP_05142157.1| phiRv2 phage protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|308232203|ref|ZP_07664026.1| phiRv2 phage protein [Mycobacterium tuberculosis SUMu001]
 18 more sequence titles
 Length=93

 Score =  181 bits (459),  Expect = 3e-44, Method: Compositional matrix adjust.
 Identities = 92/93 (99%), Positives = 93/93 (100%), Gaps = 0/93 (0%)

Query  38   VSWWSVHEYVAPTLAAAVEWPMAGTPAWCDLDDTDPVKWAAICDAARHWALRVETCQAAS  97
            +SWWSVHEYVAPTLAAAVEWPMAGTPAWCDLDDTDPVKWAAICDAARHWALRVETCQAAS
Sbjct  1    MSWWSVHEYVAPTLAAAVEWPMAGTPAWCDLDDTDPVKWAAICDAARHWALRVETCQAAS  60

Query  98   AEASRDVSAAADWPAVSREIQRRRDAYIRRVVV  130
            AEASRDVSAAADWPAVSREIQRRRDAYIRRVVV
Sbjct  61   AEASRDVSAAADWPAVSREIQRRRDAYIRRVVV  93


>gi|289751281|ref|ZP_06510659.1| phiRv1 phage protein [Mycobacterium tuberculosis T92]
 gi|289691868|gb|EFD59297.1| phiRv1 phage protein [Mycobacterium tuberculosis T92]
Length=112

 Score =  168 bits (425),  Expect = 3e-40, Method: Compositional matrix adjust.
 Identities = 89/111 (81%), Positives = 93/111 (84%), Gaps = 0/111 (0%)

Query  20   APATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPMAGTPAWCDLDDTDPVKWAAI  79
            APATVATPSS DPTASRAVSWWSVHE+VAP L AA  WPMAGTPAW  LDD DP KWAAI
Sbjct  1    APATVATPSSADPTASRAVSWWSVHEHVAPVLDAAGSWPMAGTPAWRQLDDADPRKWAAI  60

Query  80   CDAARHWALRVETCQAASAEASRDVSAAADWPAVSREIQRRRDAYIRRVVV  130
            CDAARHWALRVETCQ A A+ASRDVSAAADWP ++REI RRR  YI R  V
Sbjct  61   CDAARHWALRVETCQEAMAQASRDVSAAADWPGIAREIVRRRGVYIPRAGV  111


>gi|323717854|gb|EGB27044.1| phiRv1 phage protein [Mycobacterium tuberculosis CDC1551A]
Length=89

 Score =  129 bits (324),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 66/88 (75%), Positives = 71/88 (81%), Gaps = 0/88 (0%)

Query  43   VHEYVAPTLAAAVEWPMAGTPAWCDLDDTDPVKWAAICDAARHWALRVETCQAASAEASR  102
            +HE+VAP L AA  WPMAGTPAW  LDD DP KWAAICDAARHWALRVETCQ A A+ASR
Sbjct  1    MHEHVAPVLDAAGSWPMAGTPAWRQLDDADPRKWAAICDAARHWALRVETCQEAMAQASR  60

Query  103  DVSAAADWPAVSREIQRRRDAYIRRVVV  130
            DVSAAADWP ++REI RRR  YI R  V
Sbjct  61   DVSAAADWPGIAREIVRRRGVYIPRAGV  88


>gi|307085353|ref|ZP_07494466.1| hypothetical protein TMLG_04095 [Mycobacterium tuberculosis SUMu012]
 gi|308365100|gb|EFP53951.1| hypothetical protein TMLG_04095 [Mycobacterium tuberculosis SUMu012]
Length=67

 Score =  120 bits (302),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 62/62 (100%), Positives = 62/62 (100%), Gaps = 0/62 (0%)

Query  1   MTAVGGSPPTRRCPATEDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPMA  60
           MTAVGGSPPTRRCPATEDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPMA
Sbjct  1   MTAVGGSPPTRRCPATEDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPMA  60

Query  61  GT  62
           GT
Sbjct  61  GT  62


>gi|120402459|ref|YP_952288.1| hypothetical protein Mvan_1449 [Mycobacterium vanbaalenii PYR-1]
 gi|119955277|gb|ABM12282.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=116

 Score = 99.0 bits (245),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 48/95 (51%), Positives = 63/95 (67%), Gaps = 0/95 (0%)

Query  33   TASRAVSWWSVHEYVAPTLAAAVEWPMAGTPAWCDLDDTDPVKWAAICDAARHWALRVET  92
            TAS+ VSW  V+ +V P L    +WPMAG+PAWC LDD DPVKWAA+ DA +HW LR+E 
Sbjct  5    TASQQVSWSDVNAFVLPKLVKVGDWPMAGSPAWCLLDDRDPVKWAAVLDAGQHWILRIEG  64

Query  93   CQAASAEASRDVSAAADWPAVSREIQRRRDAYIRR  127
             Q A  +AS ++S+A DW A SR + +    +  R
Sbjct  65   WQQADCDASGEISSARDWAATSRLVTQHNSYFAAR  99


>gi|340628613|ref|YP_004747065.1| hypothetical protein MCAN_36611 [Mycobacterium canettii CIPT 
140010059]
 gi|340006803|emb|CCC45992.1| putative uncharacterised protein [Mycobacterium canettii CIPT 
140010059]
Length=147

 Score = 88.2 bits (217),  Expect = 4e-16, Method: Compositional matrix adjust.
 Identities = 51/120 (43%), Positives = 67/120 (56%), Gaps = 4/120 (3%)

Query  13   CPATEDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEW--PMAGTPAWCDLDD  70
             P  + R      + + T P+  RA  WW VH+++   +  A     P+AGTP+WC L D
Sbjct  29   LPEADHRVLQPGESVTGTPPSQQRA--WWPVHQFLEAVVQQANYGAIPVAGTPSWCALSD  86

Query  71   TDPVKWAAICDAARHWALRVETCQAASAEASRDVSAAADWPAVSREIQRRRDAYIRRVVV  130
             DP K  A+     H  LR+ET Q A AEAS ++S AADWP +SR I+RR   YI R VV
Sbjct  87   GDPRKLLALAIDGEHHVLRIETAQTALAEASCEISKAADWPELSRAIRRRSGVYITREVV  146


>gi|315442141|ref|YP_004075020.1| hypothetical protein Mspyr1_04740 [Mycobacterium sp. Spyr1]
 gi|315260444|gb|ADT97185.1| hypothetical protein Mspyr1_04740 [Mycobacterium sp. Spyr1]
Length=118

 Score = 84.7 bits (208),  Expect = 4e-15, Method: Compositional matrix adjust.
 Identities = 46/92 (50%), Positives = 59/92 (65%), Gaps = 2/92 (2%)

Query  32   PTASRAVSWWSVHEYVAPTLAAAVE--WPMAGTPAWCDLDDTDPVKWAAICDAARHWALR  89
            P +S+ VSWW+VH++V+  +        P AGTPAW DLDD DP K  A+  A  HWALR
Sbjct  18   PASSQEVSWWAVHQFVSALVHQVKNATLPWAGTPAWRDLDDDDPRKLIALAVAGEHWALR  77

Query  90   VETCQAASAEASRDVSAAADWPAVSREIQRRR  121
            VE  Q   A+A+ DV A ADW A S+++ RRR
Sbjct  78   VEIGQERRAQAAEDVWAGADWSAESQKMLRRR  109


>gi|41408864|ref|NP_961700.1| hypothetical protein MAP2766c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41397223|gb|AAS05083.1| hypothetical protein MAP_2766c [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=158

 Score = 82.0 bits (201),  Expect = 3e-14, Method: Compositional matrix adjust.
 Identities = 54/124 (44%), Positives = 68/124 (55%), Gaps = 6/124 (4%)

Query  6    GSPPTRRCPATEDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPM--AGTP  63
            GS  T     TE  AP +  TP +T+   SR VSWW  H+++   +  A   P+  AGTP
Sbjct  29   GSHATAYNRTTELTAP-SAETPGTTN---SRQVSWWETHQFIEALITQANTGPLPPAGTP  84

Query  64   AWCDLDDTDPVKWAAICDAARHWALRVETCQAASAEASRDVSAAADWPAVSREIQRRRDA  123
            AW  L D DP K  A+  A  H  LRVET Q A AEAS+ VSAAADW  + R  +   D 
Sbjct  85   AWSALADGDPRKLLALAVAGEHHVLRVETAQTAMAEASQAVSAAADWTRIGRRNRDHEDI  144

Query  124  YIRR  127
            + +R
Sbjct  145  HRQR  148


>gi|289751282|ref|ZP_06510660.1| phiRv1 phage protein [Mycobacterium tuberculosis T92]
 gi|289691869|gb|EFD59298.1| phiRv1 phage protein [Mycobacterium tuberculosis T92]
Length=65

 Score = 78.2 bits (191),  Expect = 4e-13, Method: Compositional matrix adjust.
 Identities = 42/52 (81%), Positives = 45/52 (87%), Gaps = 1/52 (1%)

Query  1   MTA-VGGSPPTRRCPATEDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTL  51
           MTA  GGSPPTRRCPATEDRAPATVAT SS DPTASRAVS WSV ++V+P L
Sbjct  1   MTAGAGGSPPTRRCPATEDRAPATVATSSSADPTASRAVSRWSVQKHVSPVL  52


>gi|342860959|ref|ZP_08717608.1| phiRv2 phage protein [Mycobacterium colombiense CECT 3035]
 gi|342131403|gb|EGT84673.1| phiRv2 phage protein [Mycobacterium colombiense CECT 3035]
Length=128

 Score = 70.9 bits (172),  Expect = 6e-11, Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 50/95 (53%), Gaps = 0/95 (0%)

Query  33   TASRAVSWWSVHEYVAPTLAAAVEWPMAGTPAWCDLDDTDPVKWAAICDAARHWALRVET  92
            T SR + W +V  + AP +      P+ GTPAWC L   DP K AA+  A ++WA     
Sbjct  32   TGSREIDWCAVAVFAAPLIYRYKSLPLPGTPAWCSLPAADPRKMAALILAGQYWAFDSAL  91

Query  93   CQAASAEASRDVSAAADWPAVSREIQRRRDAYIRR  127
             Q    EAS  +S  ADW   SR +Q+ R  +IRR
Sbjct  92   RQERQREASDAISGCADWAGFSRTLQQHRAFHIRR  126


>gi|289753670|ref|ZP_06513048.1| LOW QUALITY PROTEIN: phiRv1 phage protein [Mycobacterium tuberculosis 
EAS054]
 gi|289694257|gb|EFD61686.1| LOW QUALITY PROTEIN: phiRv1 phage protein [Mycobacterium tuberculosis 
EAS054]
Length=73

 Score = 68.2 bits (165),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 35/47 (75%), Positives = 38/47 (81%), Gaps = 0/47 (0%)

Query  84   RHWALRVETCQAASAEASRDVSAAADWPAVSREIQRRRDAYIRRVVV  130
            RHWALRVETCQ A A+ASRDVSAAADWP ++REI RRR  YI R  V
Sbjct  26   RHWALRVETCQEAMAQASRDVSAAADWPGIAREIVRRRGVYIPRAGV  72


>gi|308379736|ref|ZP_07669038.1| hypothetical protein TMKG_04040 [Mycobacterium tuberculosis SUMu011]
 gi|308363853|gb|EFP52704.1| hypothetical protein TMKG_04040 [Mycobacterium tuberculosis SUMu011]
Length=40

 Score = 67.0 bits (162),  Expect = 9e-10, Method: Compositional matrix adjust.
 Identities = 37/40 (93%), Positives = 37/40 (93%), Gaps = 1/40 (2%)

Query  1   MTA-VGGSPPTRRCPATEDRAPATVATPSSTDPTASRAVS  39
           MTA  GGSPPTRRCPATEDRAPATVATPSS DPTASRAVS
Sbjct  1   MTAGAGGSPPTRRCPATEDRAPATVATPSSADPTASRAVS  40


>gi|343926143|ref|ZP_08765652.1| hypothetical protein GOALK_056_00110 [Gordonia alkanivorans NBRC 
16433]
 gi|343763772|dbj|GAA12578.1| hypothetical protein GOALK_056_00110 [Gordonia alkanivorans NBRC 
16433]
Length=108

 Score = 57.0 bits (136),  Expect = 9e-07, Method: Compositional matrix adjust.
 Identities = 42/98 (43%), Positives = 48/98 (49%), Gaps = 12/98 (12%)

Query  37   AVSWWSVHEYVAPTLAAAVEWPMAGTPAWCDLDDTDPVKWAAICDAARHWALRVETCQAA  96
            AV+W  VH +V   L       +AGTP WC LDD DP K  A+  A   W L  E  Q  
Sbjct  5    AVTWDPVHAFVGRVLGGRTTTIVAGTPEWCALDDNDPAKITALLIAGSRWCLEEEIAQ--  62

Query  97   SAEASRD--------VSAAADWPAVSREIQRRRDAYIR  126
               ASRD        V  AADW AV+R I R RD  +R
Sbjct  63   -LHASRDAEKAAAVEVVEAADWTAVARRI-RNRDIALR  98


>gi|296141558|ref|YP_003648801.1| hypothetical protein Tpau_3889 [Tsukamurella paurometabola DSM 
20162]
 gi|296029692|gb|ADG80462.1| hypothetical protein Tpau_3889 [Tsukamurella paurometabola DSM 
20162]
Length=119

 Score = 44.7 bits (104),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 27/69 (40%), Positives = 33/69 (48%), Gaps = 1/69 (1%)

Query  40   WWSVHEYVAPTL-AAAVEWPMAGTPAWCDLDDTDPVKWAAICDAARHWALRVETCQAASA  98
            W  V  ++  T   A    P AG+ AW DLDD D +K  AI  AA  W L  E      A
Sbjct  14   WSRVKRFIKKTQPYAGGHIPEAGSQAWADLDDNDDIKMRAIGVAAERWVLEQELQDMRRA  73

Query  99   EASRDVSAA  107
            EA ++ S A
Sbjct  74   EAMKEASRA  82


>gi|326527529|dbj|BAK08039.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length=555

 Score = 37.0 bits (84),  Expect = 0.85, Method: Compositional matrix adjust.
 Identities = 22/75 (30%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query  10   TRRCPATEDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTL------AAAVEWPMAGTP  63
            +R+   +E    A  A   + +PT +R++S+   HEY+AP +       +AV+W   G  
Sbjct  365  SRKASKSEVNLNAAAAVEFNAEPTDARSMSFVGTHEYLAPEIIRGEGHGSAVDWWTLGIF  424

Query  64   AWCDLDDTDPVKWAA  78
             +  L  T P K A 
Sbjct  425  LYELLHGTTPFKGAG  439


>gi|47847716|dbj|BAD21495.1| putative viroid symptom modulation protein [Oryza sativa Japonica 
Group]
 gi|47848347|dbj|BAD22209.1| putative viroid symptom modulation protein [Oryza sativa Japonica 
Group]
Length=497

 Score = 36.6 bits (83),  Expect = 1.2, Method: Compositional matrix adjust.
 Identities = 19/68 (28%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query  17   EDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTL------AAAVEWPMAGTPAWCDLDD  70
            ++R P   +   + +PT +R++S+   HEY+AP +       +AV+W   G   +  L  
Sbjct  308  KNRPPPATSLEFTAEPTGARSMSFVGTHEYLAPEIIRGEGHGSAVDWWTFGVFLYELLHG  367

Query  71   TDPVKWAA  78
            T P K + 
Sbjct  368  TTPFKGSG  375


>gi|218190500|gb|EEC72927.1| hypothetical protein OsI_06771 [Oryza sativa Indica Group]
Length=586

 Score = 36.2 bits (82),  Expect = 1.7, Method: Compositional matrix adjust.
 Identities = 19/68 (28%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query  17   EDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTL------AAAVEWPMAGTPAWCDLDD  70
            ++R P   +   + +PT +R++S+   HEY+AP +       +AV+W   G   +  L  
Sbjct  397  KNRPPPATSLEFTAEPTGARSMSFVGTHEYLAPEIIRGEGHGSAVDWWTFGVFLYELLHG  456

Query  71   TDPVKWAA  78
            T P K + 
Sbjct  457  TTPFKGSG  464


>gi|222622616|gb|EEE56748.1| hypothetical protein OsJ_06277 [Oryza sativa Japonica Group]
Length=603

 Score = 36.2 bits (82),  Expect = 1.7, Method: Compositional matrix adjust.
 Identities = 19/68 (28%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query  17   EDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTL------AAAVEWPMAGTPAWCDLDD  70
            ++R P   +   + +PT +R++S+   HEY+AP +       +AV+W   G   +  L  
Sbjct  414  KNRPPPATSLEFTAEPTGARSMSFVGTHEYLAPEIIRGEGHGSAVDWWTFGVFLYELLHG  473

Query  71   TDPVKWAA  78
            T P K + 
Sbjct  474  TTPFKGSG  481


>gi|307110353|gb|EFN58589.1| hypothetical protein CHLNCDRAFT_140764 [Chlorella variabilis]
Length=590

 Score = 34.7 bits (78),  Expect = 4.9, Method: Compositional matrix adjust.
 Identities = 20/55 (37%), Positives = 30/55 (55%), Gaps = 7/55 (12%)

Query  76   WAAICDAARHWALRVETCQAASAEASRDVSAAADWPAVSREIQRRRDAYIRRVVV  130
            WA +    RHW       ++  A ASR VSAA  WPA +  + ++  AY++R+ V
Sbjct  194  WATVSLLVRHW-------RSIEAHASRLVSAARAWPASAVPLDQQLRAYVQRLSV  241



Lambda     K      H
   0.317    0.125    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 127765705240


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40