BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2656c
Length=130
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609793|ref|NP_217172.1| phiRv2 prophage protein [Mycobacter... 249 7e-65
gi|307080586|ref|ZP_07489756.1| hypothetical protein TMKG_04052 ... 215 2e-54
gi|307085352|ref|ZP_07494465.1| hypothetical protein TMLG_04094 ... 205 1e-51
gi|289570830|ref|ZP_06451057.1| conserved hypothetical protein [... 205 2e-51
gi|15608721|ref|NP_216099.1| phiRv1 phage protein [Mycobacterium... 200 6e-50
gi|308378979|ref|ZP_07668875.1| LOW QUALITY PROTEIN: hypothetica... 198 2e-49
gi|31792769|ref|NP_855262.1| phiRv1 phage protein [Mycobacterium... 197 4e-49
gi|167967172|ref|ZP_02549449.1| hypothetical phiRv2 prophage pro... 181 3e-44
gi|289751281|ref|ZP_06510659.1| phiRv1 phage protein [Mycobacter... 168 3e-40
gi|323717854|gb|EGB27044.1| phiRv1 phage protein [Mycobacterium ... 129 1e-28
gi|307085353|ref|ZP_07494466.1| hypothetical protein TMLG_04095 ... 120 5e-26
gi|120402459|ref|YP_952288.1| hypothetical protein Mvan_1449 [My... 99.0 2e-19
gi|340628613|ref|YP_004747065.1| hypothetical protein MCAN_36611... 88.2 4e-16
gi|315442141|ref|YP_004075020.1| hypothetical protein Mspyr1_047... 84.7 4e-15
gi|41408864|ref|NP_961700.1| hypothetical protein MAP2766c [Myco... 82.0 3e-14
gi|289751282|ref|ZP_06510660.1| phiRv1 phage protein [Mycobacter... 78.2 4e-13
gi|342860959|ref|ZP_08717608.1| phiRv2 phage protein [Mycobacter... 70.9 6e-11
gi|289753670|ref|ZP_06513048.1| LOW QUALITY PROTEIN: phiRv1 phag... 68.2 3e-10
gi|308379736|ref|ZP_07669038.1| hypothetical protein TMKG_04040 ... 67.0 9e-10
gi|343926143|ref|ZP_08765652.1| hypothetical protein GOALK_056_0... 57.0 9e-07
gi|296141558|ref|YP_003648801.1| hypothetical protein Tpau_3889 ... 44.7 0.005
gi|326527529|dbj|BAK08039.1| predicted protein [Hordeum vulgare ... 37.0 0.85
gi|47847716|dbj|BAD21495.1| putative viroid symptom modulation p... 36.6 1.2
gi|218190500|gb|EEC72927.1| hypothetical protein OsI_06771 [Oryz... 36.2 1.7
gi|222622616|gb|EEE56748.1| hypothetical protein OsJ_06277 [Oryz... 36.2 1.7
gi|307110353|gb|EFN58589.1| hypothetical protein CHLNCDRAFT_1407... 34.7 4.9
>gi|15609793|ref|NP_217172.1| phiRv2 prophage protein [Mycobacterium tuberculosis H37Rv]
gi|15842196|ref|NP_337233.1| hypothetical protein MT2733 [Mycobacterium tuberculosis CDC1551]
gi|148662498|ref|YP_001284021.1| putative phiRv2 prophage protein [Mycobacterium tuberculosis
H37Ra]
39 more sequence titles
Length=130
Score = 249 bits (637), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 130/130 (100%), Positives = 130/130 (100%), Gaps = 0/130 (0%)
Query 1 MTAVGGSPPTRRCPATEDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPMA 60
MTAVGGSPPTRRCPATEDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPMA
Sbjct 1 MTAVGGSPPTRRCPATEDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPMA 60
Query 61 GTPAWCDLDDTDPVKWAAICDAARHWALRVETCQAASAEASRDVSAAADWPAVSREIQRR 120
GTPAWCDLDDTDPVKWAAICDAARHWALRVETCQAASAEASRDVSAAADWPAVSREIQRR
Sbjct 61 GTPAWCDLDDTDPVKWAAICDAARHWALRVETCQAASAEASRDVSAAADWPAVSREIQRR 120
Query 121 RDAYIRRVVV 130
RDAYIRRVVV
Sbjct 121 RDAYIRRVVV 130
>gi|307080586|ref|ZP_07489756.1| hypothetical protein TMKG_04052 [Mycobacterium tuberculosis SUMu011]
gi|308361665|gb|EFP50516.1| hypothetical protein TMKG_04052 [Mycobacterium tuberculosis SUMu011]
Length=124
Score = 215 bits (547), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 113/115 (99%), Positives = 113/115 (99%), Gaps = 0/115 (0%)
Query 16 TEDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPMAGTPAWCDLDDTDPVK 75
T RAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPMAGTPAWCDLDDTDPVK
Sbjct 10 TRTRAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPMAGTPAWCDLDDTDPVK 69
Query 76 WAAICDAARHWALRVETCQAASAEASRDVSAAADWPAVSREIQRRRDAYIRRVVV 130
WAAICDAARHWALRVETCQAASAEASRDVSAAADWPAVSREIQRRRDAYIRRVVV
Sbjct 70 WAAICDAARHWALRVETCQAASAEASRDVSAAADWPAVSREIQRRRDAYIRRVVV 124
>gi|307085352|ref|ZP_07494465.1| hypothetical protein TMLG_04094 [Mycobacterium tuberculosis SUMu012]
gi|308365110|gb|EFP53961.1| hypothetical protein TMLG_04094 [Mycobacterium tuberculosis SUMu012]
Length=107
Score = 205 bits (522), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 107/107 (100%), Positives = 107/107 (100%), Gaps = 0/107 (0%)
Query 24 VATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPMAGTPAWCDLDDTDPVKWAAICDAA 83
VATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPMAGTPAWCDLDDTDPVKWAAICDAA
Sbjct 1 VATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPMAGTPAWCDLDDTDPVKWAAICDAA 60
Query 84 RHWALRVETCQAASAEASRDVSAAADWPAVSREIQRRRDAYIRRVVV 130
RHWALRVETCQAASAEASRDVSAAADWPAVSREIQRRRDAYIRRVVV
Sbjct 61 RHWALRVETCQAASAEASRDVSAAADWPAVSREIQRRRDAYIRRVVV 107
>gi|289570830|ref|ZP_06451057.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289544584|gb|EFD48232.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
Length=109
Score = 205 bits (521), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 106/109 (98%), Positives = 106/109 (98%), Gaps = 0/109 (0%)
Query 1 MTAVGGSPPTRRCPATEDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPMA 60
MTAVGGSPPTRRCPATEDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPMA
Sbjct 1 MTAVGGSPPTRRCPATEDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPMA 60
Query 61 GTPAWCDLDDTDPVKWAAICDAARHWALRVETCQAASAEASRDVSAAAD 109
GTPAWCDLDDTDPVKWAAICDAARHWALRVETCQAASAEASRDV A D
Sbjct 61 GTPAWCDLDDTDPVKWAAICDAARHWALRVETCQAASAEASRDVYVAGD 109
>gi|15608721|ref|NP_216099.1| phiRv1 phage protein [Mycobacterium tuberculosis H37Rv]
gi|15843065|ref|NP_338102.1| hypothetical protein MT3573.2 [Mycobacterium tuberculosis CDC1551]
gi|148661378|ref|YP_001282901.1| putative phiRv1 phage protein [Mycobacterium tuberculosis H37Ra]
27 more sequence titles
Length=132
Score = 200 bits (508), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 107/131 (82%), Positives = 111/131 (85%), Gaps = 1/131 (0%)
Query 1 MTA-VGGSPPTRRCPATEDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPM 59
MTA GGSPPTRRCPATEDRAPATVATPSS DPTASRAVSWWSVHE+VAP L AA WPM
Sbjct 1 MTAGAGGSPPTRRCPATEDRAPATVATPSSADPTASRAVSWWSVHEHVAPVLDAAGSWPM 60
Query 60 AGTPAWCDLDDTDPVKWAAICDAARHWALRVETCQAASAEASRDVSAAADWPAVSREIQR 119
AGTPAW LDD DP KWAAICDAARHWALRVETCQ A A+ASRDVSAAADWP ++REI R
Sbjct 61 AGTPAWRQLDDADPRKWAAICDAARHWALRVETCQEAMAQASRDVSAAADWPGIAREIVR 120
Query 120 RRDAYIRRVVV 130
RR YI R V
Sbjct 121 RRGVYIPRAGV 131
>gi|308378979|ref|ZP_07668875.1| LOW QUALITY PROTEIN: hypothetical protein TMJG_03013 [Mycobacterium
tuberculosis SUMu010]
gi|308358731|gb|EFP47582.1| LOW QUALITY PROTEIN: hypothetical protein TMJG_03013 [Mycobacterium
tuberculosis SUMu010]
Length=133
Score = 198 bits (504), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 106/128 (83%), Positives = 110/128 (86%), Gaps = 1/128 (0%)
Query 1 MTA-VGGSPPTRRCPATEDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPM 59
MTA GGSPPTRRCPATEDRAPATVATPSS DPTASRAVSWWSVHE+VAP L AA WPM
Sbjct 1 MTAGAGGSPPTRRCPATEDRAPATVATPSSADPTASRAVSWWSVHEHVAPVLDAAGSWPM 60
Query 60 AGTPAWCDLDDTDPVKWAAICDAARHWALRVETCQAASAEASRDVSAAADWPAVSREIQR 119
AGTPAW LDD DP KWAAICDAARHWALRVETCQ A A+ASRDVSAAADWP ++REI R
Sbjct 61 AGTPAWRQLDDADPRKWAAICDAARHWALRVETCQEAMAQASRDVSAAADWPGIAREIVR 120
Query 120 RRDAYIRR 127
RR YI R
Sbjct 121 RRGVYIPR 128
>gi|31792769|ref|NP_855262.1| phiRv1 phage protein [Mycobacterium bovis AF2122/97]
gi|31618359|emb|CAD96277.1| Probable phiRv1 phage protein [Mycobacterium bovis AF2122/97]
Length=132
Score = 197 bits (501), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 106/131 (81%), Positives = 110/131 (84%), Gaps = 1/131 (0%)
Query 1 MTA-VGGSPPTRRCPATEDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPM 59
MTA GGSPPTRRC ATEDRAPATVATPSS DPTASRAVSWWSVHE+VAP L AA WPM
Sbjct 1 MTAGAGGSPPTRRCSATEDRAPATVATPSSADPTASRAVSWWSVHEHVAPVLDAAGSWPM 60
Query 60 AGTPAWCDLDDTDPVKWAAICDAARHWALRVETCQAASAEASRDVSAAADWPAVSREIQR 119
AGTPAW LDD DP KWAAICDAARHWALRVETCQ A A+ASRDVSAAADWP ++REI R
Sbjct 61 AGTPAWRQLDDADPRKWAAICDAARHWALRVETCQEAMAQASRDVSAAADWPGIAREIVR 120
Query 120 RRDAYIRRVVV 130
RR YI R V
Sbjct 121 RRGVYIPRAGV 131
>gi|167967172|ref|ZP_02549449.1| hypothetical phiRv2 prophage protein [Mycobacterium tuberculosis
H37Ra]
gi|254551710|ref|ZP_05142157.1| phiRv2 phage protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
gi|308232203|ref|ZP_07664026.1| phiRv2 phage protein [Mycobacterium tuberculosis SUMu001]
18 more sequence titles
Length=93
Score = 181 bits (459), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 92/93 (99%), Positives = 93/93 (100%), Gaps = 0/93 (0%)
Query 38 VSWWSVHEYVAPTLAAAVEWPMAGTPAWCDLDDTDPVKWAAICDAARHWALRVETCQAAS 97
+SWWSVHEYVAPTLAAAVEWPMAGTPAWCDLDDTDPVKWAAICDAARHWALRVETCQAAS
Sbjct 1 MSWWSVHEYVAPTLAAAVEWPMAGTPAWCDLDDTDPVKWAAICDAARHWALRVETCQAAS 60
Query 98 AEASRDVSAAADWPAVSREIQRRRDAYIRRVVV 130
AEASRDVSAAADWPAVSREIQRRRDAYIRRVVV
Sbjct 61 AEASRDVSAAADWPAVSREIQRRRDAYIRRVVV 93
>gi|289751281|ref|ZP_06510659.1| phiRv1 phage protein [Mycobacterium tuberculosis T92]
gi|289691868|gb|EFD59297.1| phiRv1 phage protein [Mycobacterium tuberculosis T92]
Length=112
Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 89/111 (81%), Positives = 93/111 (84%), Gaps = 0/111 (0%)
Query 20 APATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPMAGTPAWCDLDDTDPVKWAAI 79
APATVATPSS DPTASRAVSWWSVHE+VAP L AA WPMAGTPAW LDD DP KWAAI
Sbjct 1 APATVATPSSADPTASRAVSWWSVHEHVAPVLDAAGSWPMAGTPAWRQLDDADPRKWAAI 60
Query 80 CDAARHWALRVETCQAASAEASRDVSAAADWPAVSREIQRRRDAYIRRVVV 130
CDAARHWALRVETCQ A A+ASRDVSAAADWP ++REI RRR YI R V
Sbjct 61 CDAARHWALRVETCQEAMAQASRDVSAAADWPGIAREIVRRRGVYIPRAGV 111
>gi|323717854|gb|EGB27044.1| phiRv1 phage protein [Mycobacterium tuberculosis CDC1551A]
Length=89
Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/88 (75%), Positives = 71/88 (81%), Gaps = 0/88 (0%)
Query 43 VHEYVAPTLAAAVEWPMAGTPAWCDLDDTDPVKWAAICDAARHWALRVETCQAASAEASR 102
+HE+VAP L AA WPMAGTPAW LDD DP KWAAICDAARHWALRVETCQ A A+ASR
Sbjct 1 MHEHVAPVLDAAGSWPMAGTPAWRQLDDADPRKWAAICDAARHWALRVETCQEAMAQASR 60
Query 103 DVSAAADWPAVSREIQRRRDAYIRRVVV 130
DVSAAADWP ++REI RRR YI R V
Sbjct 61 DVSAAADWPGIAREIVRRRGVYIPRAGV 88
>gi|307085353|ref|ZP_07494466.1| hypothetical protein TMLG_04095 [Mycobacterium tuberculosis SUMu012]
gi|308365100|gb|EFP53951.1| hypothetical protein TMLG_04095 [Mycobacterium tuberculosis SUMu012]
Length=67
Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 62/62 (100%), Positives = 62/62 (100%), Gaps = 0/62 (0%)
Query 1 MTAVGGSPPTRRCPATEDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPMA 60
MTAVGGSPPTRRCPATEDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPMA
Sbjct 1 MTAVGGSPPTRRCPATEDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPMA 60
Query 61 GT 62
GT
Sbjct 61 GT 62
>gi|120402459|ref|YP_952288.1| hypothetical protein Mvan_1449 [Mycobacterium vanbaalenii PYR-1]
gi|119955277|gb|ABM12282.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=116
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/95 (51%), Positives = 63/95 (67%), Gaps = 0/95 (0%)
Query 33 TASRAVSWWSVHEYVAPTLAAAVEWPMAGTPAWCDLDDTDPVKWAAICDAARHWALRVET 92
TAS+ VSW V+ +V P L +WPMAG+PAWC LDD DPVKWAA+ DA +HW LR+E
Sbjct 5 TASQQVSWSDVNAFVLPKLVKVGDWPMAGSPAWCLLDDRDPVKWAAVLDAGQHWILRIEG 64
Query 93 CQAASAEASRDVSAAADWPAVSREIQRRRDAYIRR 127
Q A +AS ++S+A DW A SR + + + R
Sbjct 65 WQQADCDASGEISSARDWAATSRLVTQHNSYFAAR 99
>gi|340628613|ref|YP_004747065.1| hypothetical protein MCAN_36611 [Mycobacterium canettii CIPT
140010059]
gi|340006803|emb|CCC45992.1| putative uncharacterised protein [Mycobacterium canettii CIPT
140010059]
Length=147
Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/120 (43%), Positives = 67/120 (56%), Gaps = 4/120 (3%)
Query 13 CPATEDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEW--PMAGTPAWCDLDD 70
P + R + + T P+ RA WW VH+++ + A P+AGTP+WC L D
Sbjct 29 LPEADHRVLQPGESVTGTPPSQQRA--WWPVHQFLEAVVQQANYGAIPVAGTPSWCALSD 86
Query 71 TDPVKWAAICDAARHWALRVETCQAASAEASRDVSAAADWPAVSREIQRRRDAYIRRVVV 130
DP K A+ H LR+ET Q A AEAS ++S AADWP +SR I+RR YI R VV
Sbjct 87 GDPRKLLALAIDGEHHVLRIETAQTALAEASCEISKAADWPELSRAIRRRSGVYITREVV 146
>gi|315442141|ref|YP_004075020.1| hypothetical protein Mspyr1_04740 [Mycobacterium sp. Spyr1]
gi|315260444|gb|ADT97185.1| hypothetical protein Mspyr1_04740 [Mycobacterium sp. Spyr1]
Length=118
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 59/92 (65%), Gaps = 2/92 (2%)
Query 32 PTASRAVSWWSVHEYVAPTLAAAVE--WPMAGTPAWCDLDDTDPVKWAAICDAARHWALR 89
P +S+ VSWW+VH++V+ + P AGTPAW DLDD DP K A+ A HWALR
Sbjct 18 PASSQEVSWWAVHQFVSALVHQVKNATLPWAGTPAWRDLDDDDPRKLIALAVAGEHWALR 77
Query 90 VETCQAASAEASRDVSAAADWPAVSREIQRRR 121
VE Q A+A+ DV A ADW A S+++ RRR
Sbjct 78 VEIGQERRAQAAEDVWAGADWSAESQKMLRRR 109
>gi|41408864|ref|NP_961700.1| hypothetical protein MAP2766c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41397223|gb|AAS05083.1| hypothetical protein MAP_2766c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=158
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/124 (44%), Positives = 68/124 (55%), Gaps = 6/124 (4%)
Query 6 GSPPTRRCPATEDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPM--AGTP 63
GS T TE AP + TP +T+ SR VSWW H+++ + A P+ AGTP
Sbjct 29 GSHATAYNRTTELTAP-SAETPGTTN---SRQVSWWETHQFIEALITQANTGPLPPAGTP 84
Query 64 AWCDLDDTDPVKWAAICDAARHWALRVETCQAASAEASRDVSAAADWPAVSREIQRRRDA 123
AW L D DP K A+ A H LRVET Q A AEAS+ VSAAADW + R + D
Sbjct 85 AWSALADGDPRKLLALAVAGEHHVLRVETAQTAMAEASQAVSAAADWTRIGRRNRDHEDI 144
Query 124 YIRR 127
+ +R
Sbjct 145 HRQR 148
>gi|289751282|ref|ZP_06510660.1| phiRv1 phage protein [Mycobacterium tuberculosis T92]
gi|289691869|gb|EFD59298.1| phiRv1 phage protein [Mycobacterium tuberculosis T92]
Length=65
Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/52 (81%), Positives = 45/52 (87%), Gaps = 1/52 (1%)
Query 1 MTA-VGGSPPTRRCPATEDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTL 51
MTA GGSPPTRRCPATEDRAPATVAT SS DPTASRAVS WSV ++V+P L
Sbjct 1 MTAGAGGSPPTRRCPATEDRAPATVATSSSADPTASRAVSRWSVQKHVSPVL 52
>gi|342860959|ref|ZP_08717608.1| phiRv2 phage protein [Mycobacterium colombiense CECT 3035]
gi|342131403|gb|EGT84673.1| phiRv2 phage protein [Mycobacterium colombiense CECT 3035]
Length=128
Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 50/95 (53%), Gaps = 0/95 (0%)
Query 33 TASRAVSWWSVHEYVAPTLAAAVEWPMAGTPAWCDLDDTDPVKWAAICDAARHWALRVET 92
T SR + W +V + AP + P+ GTPAWC L DP K AA+ A ++WA
Sbjct 32 TGSREIDWCAVAVFAAPLIYRYKSLPLPGTPAWCSLPAADPRKMAALILAGQYWAFDSAL 91
Query 93 CQAASAEASRDVSAAADWPAVSREIQRRRDAYIRR 127
Q EAS +S ADW SR +Q+ R +IRR
Sbjct 92 RQERQREASDAISGCADWAGFSRTLQQHRAFHIRR 126
>gi|289753670|ref|ZP_06513048.1| LOW QUALITY PROTEIN: phiRv1 phage protein [Mycobacterium tuberculosis
EAS054]
gi|289694257|gb|EFD61686.1| LOW QUALITY PROTEIN: phiRv1 phage protein [Mycobacterium tuberculosis
EAS054]
Length=73
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/47 (75%), Positives = 38/47 (81%), Gaps = 0/47 (0%)
Query 84 RHWALRVETCQAASAEASRDVSAAADWPAVSREIQRRRDAYIRRVVV 130
RHWALRVETCQ A A+ASRDVSAAADWP ++REI RRR YI R V
Sbjct 26 RHWALRVETCQEAMAQASRDVSAAADWPGIAREIVRRRGVYIPRAGV 72
>gi|308379736|ref|ZP_07669038.1| hypothetical protein TMKG_04040 [Mycobacterium tuberculosis SUMu011]
gi|308363853|gb|EFP52704.1| hypothetical protein TMKG_04040 [Mycobacterium tuberculosis SUMu011]
Length=40
Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/40 (93%), Positives = 37/40 (93%), Gaps = 1/40 (2%)
Query 1 MTA-VGGSPPTRRCPATEDRAPATVATPSSTDPTASRAVS 39
MTA GGSPPTRRCPATEDRAPATVATPSS DPTASRAVS
Sbjct 1 MTAGAGGSPPTRRCPATEDRAPATVATPSSADPTASRAVS 40
>gi|343926143|ref|ZP_08765652.1| hypothetical protein GOALK_056_00110 [Gordonia alkanivorans NBRC
16433]
gi|343763772|dbj|GAA12578.1| hypothetical protein GOALK_056_00110 [Gordonia alkanivorans NBRC
16433]
Length=108
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/98 (43%), Positives = 48/98 (49%), Gaps = 12/98 (12%)
Query 37 AVSWWSVHEYVAPTLAAAVEWPMAGTPAWCDLDDTDPVKWAAICDAARHWALRVETCQAA 96
AV+W VH +V L +AGTP WC LDD DP K A+ A W L E Q
Sbjct 5 AVTWDPVHAFVGRVLGGRTTTIVAGTPEWCALDDNDPAKITALLIAGSRWCLEEEIAQ-- 62
Query 97 SAEASRD--------VSAAADWPAVSREIQRRRDAYIR 126
ASRD V AADW AV+R I R RD +R
Sbjct 63 -LHASRDAEKAAAVEVVEAADWTAVARRI-RNRDIALR 98
>gi|296141558|ref|YP_003648801.1| hypothetical protein Tpau_3889 [Tsukamurella paurometabola DSM
20162]
gi|296029692|gb|ADG80462.1| hypothetical protein Tpau_3889 [Tsukamurella paurometabola DSM
20162]
Length=119
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/69 (40%), Positives = 33/69 (48%), Gaps = 1/69 (1%)
Query 40 WWSVHEYVAPTL-AAAVEWPMAGTPAWCDLDDTDPVKWAAICDAARHWALRVETCQAASA 98
W V ++ T A P AG+ AW DLDD D +K AI AA W L E A
Sbjct 14 WSRVKRFIKKTQPYAGGHIPEAGSQAWADLDDNDDIKMRAIGVAAERWVLEQELQDMRRA 73
Query 99 EASRDVSAA 107
EA ++ S A
Sbjct 74 EAMKEASRA 82
>gi|326527529|dbj|BAK08039.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length=555
Score = 37.0 bits (84), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/75 (30%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query 10 TRRCPATEDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTL------AAAVEWPMAGTP 63
+R+ +E A A + +PT +R++S+ HEY+AP + +AV+W G
Sbjct 365 SRKASKSEVNLNAAAAVEFNAEPTDARSMSFVGTHEYLAPEIIRGEGHGSAVDWWTLGIF 424
Query 64 AWCDLDDTDPVKWAA 78
+ L T P K A
Sbjct 425 LYELLHGTTPFKGAG 439
>gi|47847716|dbj|BAD21495.1| putative viroid symptom modulation protein [Oryza sativa Japonica
Group]
gi|47848347|dbj|BAD22209.1| putative viroid symptom modulation protein [Oryza sativa Japonica
Group]
Length=497
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/68 (28%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query 17 EDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTL------AAAVEWPMAGTPAWCDLDD 70
++R P + + +PT +R++S+ HEY+AP + +AV+W G + L
Sbjct 308 KNRPPPATSLEFTAEPTGARSMSFVGTHEYLAPEIIRGEGHGSAVDWWTFGVFLYELLHG 367
Query 71 TDPVKWAA 78
T P K +
Sbjct 368 TTPFKGSG 375
>gi|218190500|gb|EEC72927.1| hypothetical protein OsI_06771 [Oryza sativa Indica Group]
Length=586
Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/68 (28%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query 17 EDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTL------AAAVEWPMAGTPAWCDLDD 70
++R P + + +PT +R++S+ HEY+AP + +AV+W G + L
Sbjct 397 KNRPPPATSLEFTAEPTGARSMSFVGTHEYLAPEIIRGEGHGSAVDWWTFGVFLYELLHG 456
Query 71 TDPVKWAA 78
T P K +
Sbjct 457 TTPFKGSG 464
>gi|222622616|gb|EEE56748.1| hypothetical protein OsJ_06277 [Oryza sativa Japonica Group]
Length=603
Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/68 (28%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query 17 EDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTL------AAAVEWPMAGTPAWCDLDD 70
++R P + + +PT +R++S+ HEY+AP + +AV+W G + L
Sbjct 414 KNRPPPATSLEFTAEPTGARSMSFVGTHEYLAPEIIRGEGHGSAVDWWTFGVFLYELLHG 473
Query 71 TDPVKWAA 78
T P K +
Sbjct 474 TTPFKGSG 481
>gi|307110353|gb|EFN58589.1| hypothetical protein CHLNCDRAFT_140764 [Chlorella variabilis]
Length=590
Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/55 (37%), Positives = 30/55 (55%), Gaps = 7/55 (12%)
Query 76 WAAICDAARHWALRVETCQAASAEASRDVSAAADWPAVSREIQRRRDAYIRRVVV 130
WA + RHW ++ A ASR VSAA WPA + + ++ AY++R+ V
Sbjct 194 WATVSLLVRHW-------RSIEAHASRLVSAARAWPASAVPLDQQLRAYVQRLSV 241
Lambda K H
0.317 0.125 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 127765705240
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40