BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2657c
Length=86
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609794|ref|NP_217173.1| phiRv2 prophage protein [Mycobacter... 176 1e-42
gi|344220484|gb|AEN01115.1| phiRv2 prophage protein [Mycobacteri... 173 1e-41
gi|167967173|ref|ZP_02549450.1| hypothetical phiRv2 prophage pro... 130 9e-29
gi|145224479|ref|YP_001135157.1| DNA binding domain-containing p... 89.7 1e-16
gi|240169742|ref|ZP_04748401.1| phiRv2 prophage protein [Mycobac... 85.5 2e-15
gi|342240092|gb|AEL20096.1| gp40 [Mycobacterium phage GUmbie] 84.3 5e-15
gi|120403497|ref|YP_953326.1| DNA binding domain-containing prot... 75.1 3e-12
gi|296171014|ref|ZP_06852498.1| DNA binding domain protein [Myco... 73.9 7e-12
gi|126434853|ref|YP_001070544.1| DNA binding domain-containing p... 72.8 2e-11
gi|254777685|ref|ZP_05219201.1| DNA binding domain-containing pr... 59.7 1e-07
gi|206600224|ref|YP_002241830.1| gp43 [Mycobacterium phage Ramse... 57.8 5e-07
gi|109392489|ref|YP_655618.1| gp39 [Mycobacterium phage Che12] >... 57.8 6e-07
gi|226307995|ref|YP_002767955.1| phage excisionase [Rhodococcus ... 56.6 1e-06
gi|342221235|gb|AEL17830.1| gp37 [Mycobacterium phage Turbido] 56.2 2e-06
gi|339752044|gb|AEJ92080.1| gp35 [Mycobacterium phage HelDan] 55.5 3e-06
gi|302858548|gb|ADL71294.1| gp34 [Mycobacterium phage Eagle] 55.1 4e-06
gi|339781571|gb|AEK07402.1| gp35 [Mycobacterium phage Rockstar] 54.7 4e-06
gi|9625466|ref|NP_039700.1| predicted 6.3Kd protein [Mycobacteri... 54.7 5e-06
gi|9630420|ref|NP_046852.1| hypothetical protein D29p34 [Mycobac... 54.3 6e-06
gi|342221328|gb|AEL17922.1| gp37 [Mycobacterium phage Trixie] 54.3 7e-06
gi|336458857|gb|EGO37814.1| hypothetical protein MAPs_09160 [Myc... 53.9 8e-06
gi|339755125|gb|AEJ95135.1| gp38 [Mycobacterium phage JHC117] >g... 52.8 2e-05
gi|192824213|ref|YP_001994854.1| gp37 [Mycobacterium phage Pukov... 52.4 2e-05
gi|336118698|ref|YP_004573469.1| putative phage excisionase [Mic... 48.9 3e-04
gi|344043692|gb|EGV39380.1| hypothetical protein CgS9114_12976 [... 48.5 3e-04
gi|269929121|ref|YP_003321442.1| DNA binding domain-containing p... 47.0 0.001
gi|227487380|ref|ZP_03917696.1| hypothetical protein HMPREF0294_... 45.8 0.002
gi|339755334|gb|AEJ95342.1| gp58 [Mycobacterium phage Marvin] 43.9 0.008
gi|227496707|ref|ZP_03926982.1| hypothetical protein HMPREF0058_... 42.4 0.022
gi|255323768|ref|ZP_05364894.1| conserved hypothetical protein [... 42.4 0.026
gi|311747168|ref|ZP_07720953.1| mobilizable transposon, TnpA pro... 40.8 0.066
gi|309810564|ref|ZP_07704381.1| DNA binding domain protein, exci... 40.8 0.072
gi|227549379|ref|ZP_03979428.1| hypothetical protein HMPREF0298_... 39.7 0.14
gi|146300387|ref|YP_001194978.1| hypothetical protein Fjoh_2632 ... 39.7 0.15
gi|339782869|gb|AEK08589.1| gp45 [Mycobacterium phage DLane] 39.3 0.21
gi|326331571|ref|ZP_08197861.1| putative DNA binding domain, exc... 39.3 0.21
gi|300780548|ref|ZP_07090403.1| conserved hypothetical protein [... 39.3 0.22
gi|126665411|ref|ZP_01736393.1| hypothetical cytosolic protein [... 38.9 0.27
gi|269957135|ref|YP_003326924.1| excisionase family DNA binding ... 38.5 0.31
gi|344223326|gb|EGV49814.1| putative phage excisionase [endosymb... 38.5 0.32
gi|298375520|ref|ZP_06985477.1| mobilizable transposon, TnpA pro... 38.5 0.37
gi|281355139|ref|ZP_06241633.1| DNA binding domain protein, exci... 38.1 0.41
gi|343526012|ref|ZP_08762965.1| DNA binding domain protein, exci... 38.1 0.41
gi|167039358|ref|YP_001662343.1| DNA binding domain-containing p... 38.1 0.45
gi|312281370|ref|YP_004022733.1| DNA binding domain-containing p... 38.1 0.47
gi|298242032|ref|ZP_06965839.1| DNA binding domain protein, exci... 38.1 0.50
gi|167761900|ref|ZP_02434027.1| hypothetical protein BACSTE_0024... 37.7 0.56
gi|188591845|ref|YP_001796444.1| putative DNA_binding excisionas... 37.7 0.60
gi|223939803|ref|ZP_03631673.1| DNA binding domain protein, exci... 37.7 0.61
gi|213692057|ref|YP_002322643.1| hypothetical protein Blon_1175 ... 37.7 0.64
>gi|15609794|ref|NP_217173.1| phiRv2 prophage protein [Mycobacterium tuberculosis H37Rv]
gi|15842197|ref|NP_337234.1| gene 36 protein, putative [Mycobacterium tuberculosis CDC1551]
gi|148662499|ref|YP_001284022.1| putative phiRv2 prophage protein [Mycobacterium tuberculosis
H37Ra]
35 more sequence titles
Length=86
Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)
Query 1 MCAFPSPSLGWTVSHETERPGMADAPPLSRRYITISEAAEYLAVTDRTVRQMIADGRLRG 60
MCAFPSPSLGWTVSHETERPGMADAPPLSRRYITISEAAEYLAVTDRTVRQMIADGRLRG
Sbjct 1 MCAFPSPSLGWTVSHETERPGMADAPPLSRRYITISEAAEYLAVTDRTVRQMIADGRLRG 60
Query 61 YRSGTRLVRLRRDEVDGAMHPFGGAA 86
YRSGTRLVRLRRDEVDGAMHPFGGAA
Sbjct 61 YRSGTRLVRLRRDEVDGAMHPFGGAA 86
>gi|344220484|gb|AEN01115.1| phiRv2 prophage protein [Mycobacterium tuberculosis CTRI-2]
Length=86
Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/86 (99%), Positives = 85/86 (99%), Gaps = 0/86 (0%)
Query 1 MCAFPSPSLGWTVSHETERPGMADAPPLSRRYITISEAAEYLAVTDRTVRQMIADGRLRG 60
MCAFPSPSLGWTVSHETERPGMADAPPLSRRYITISEAAEYLAVTDRTVRQMIADG LRG
Sbjct 1 MCAFPSPSLGWTVSHETERPGMADAPPLSRRYITISEAAEYLAVTDRTVRQMIADGGLRG 60
Query 61 YRSGTRLVRLRRDEVDGAMHPFGGAA 86
YRSGTRLVRLRRDEVDGAMHPFGGAA
Sbjct 61 YRSGTRLVRLRRDEVDGAMHPFGGAA 86
>gi|167967173|ref|ZP_02549450.1| hypothetical phiRv2 prophage protein [Mycobacterium tuberculosis
H37Ra]
gi|254551711|ref|ZP_05142158.1| phiRv2 phage protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
gi|308232204|ref|ZP_07664027.1| phiRv2 phage protein [Mycobacterium tuberculosis SUMu001]
24 more sequence titles
Length=65
Score = 130 bits (326), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 65/65 (100%), Positives = 65/65 (100%), Gaps = 0/65 (0%)
Query 22 MADAPPLSRRYITISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDEVDGAMHP 81
MADAPPLSRRYITISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDEVDGAMHP
Sbjct 1 MADAPPLSRRYITISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDEVDGAMHP 60
Query 82 FGGAA 86
FGGAA
Sbjct 61 FGGAA 65
>gi|145224479|ref|YP_001135157.1| DNA binding domain-containing protein [Mycobacterium gilvum PYR-GCK]
gi|145216965|gb|ABP46369.1| DNA binding domain, excisionase family [Mycobacterium gilvum
PYR-GCK]
Length=65
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/65 (67%), Positives = 51/65 (79%), Gaps = 0/65 (0%)
Query 22 MADAPPLSRRYITISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDEVDGAMHP 81
MA+ RRY ++EAA+YL VTDRT+RQMIADGRL GYRSG RLVR+ +E+D AM P
Sbjct 1 MAETLATRRRYAKLTEAADYLGVTDRTIRQMIADGRLTGYRSGKRLVRVDLNEIDDAMQP 60
Query 82 FGGAA 86
FGGAA
Sbjct 61 FGGAA 65
>gi|240169742|ref|ZP_04748401.1| phiRv2 prophage protein [Mycobacterium kansasii ATCC 12478]
Length=74
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/57 (69%), Positives = 48/57 (85%), Gaps = 0/57 (0%)
Query 30 RRYITISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDEVDGAMHPFGGAA 86
R Y++I+E A+YL +T RTVRQM+ADGRLRGY+ G R+VRLRRDE+D AM PFGG A
Sbjct 17 RPYLSIAETADYLGITTRTVRQMVADGRLRGYKLGARVVRLRRDEIDSAMLPFGGGA 73
>gi|342240092|gb|AEL20096.1| gp40 [Mycobacterium phage GUmbie]
Length=64
Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/65 (65%), Positives = 51/65 (79%), Gaps = 1/65 (1%)
Query 22 MADAPPLSRRYITISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDEVDGAMHP 81
M DAP RR++ ++EAA YL VT RT+RQMIADGRL GYR+G RLVR+ +E+D AM P
Sbjct 1 MGDAP-TPRRFVKLAEAAAYLDVTPRTIRQMIADGRLTGYRAGARLVRVDLNEIDAAMQP 59
Query 82 FGGAA 86
FGGAA
Sbjct 60 FGGAA 64
>gi|120403497|ref|YP_953326.1| DNA binding domain-containing protein [Mycobacterium vanbaalenii
PYR-1]
gi|119956315|gb|ABM13320.1| DNA binding domain, excisionase family [Mycobacterium vanbaalenii
PYR-1]
Length=62
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/55 (64%), Positives = 43/55 (79%), Gaps = 0/55 (0%)
Query 30 RRYITISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDEVDGAMHPFGG 84
RRY + +AA+YL VTDRT+R MI+DGRL GYR+GTRLVR+ +EVD M FGG
Sbjct 4 RRYASTKDAADYLGVTDRTIRAMISDGRLTGYRNGTRLVRVDLNEVDAMMTAFGG 58
>gi|296171014|ref|ZP_06852498.1| DNA binding domain protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295894410|gb|EFG74158.1| DNA binding domain protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=78
Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/56 (63%), Positives = 43/56 (77%), Gaps = 1/56 (1%)
Query 32 YITISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDEVDG-AMHPFGGAA 86
Y + EAAEYL VTDRT+RQMIADGR+ GYR+G RL+R+ +E+D M PFGG A
Sbjct 23 YAKLIEAAEYLGVTDRTIRQMIADGRITGYRNGPRLIRVDLNEIDDVVMQPFGGGA 78
>gi|126434853|ref|YP_001070544.1| DNA binding domain-containing protein [Mycobacterium sp. JLS]
gi|126234653|gb|ABN98053.1| DNA binding domain, excisionase family [Mycobacterium sp. JLS]
Length=73
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/68 (59%), Positives = 47/68 (70%), Gaps = 1/68 (1%)
Query 19 RPGMADAPPLSRRYITISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDEVDGA 78
R A+A P RRY T +EAAEYL VT RT+RQMIADGRL GYR R +R+ +E+D A
Sbjct 5 RTDRAEAQP-RRRYATQAEAAEYLGVTTRTIRQMIADGRLIGYRLNPRFIRVDLNEIDAA 63
Query 79 MHPFGGAA 86
M P GG A
Sbjct 64 MTPTGGGA 71
>gi|254777685|ref|ZP_05219201.1| DNA binding domain-containing protein [Mycobacterium avium subsp.
avium ATCC 25291]
Length=43
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/43 (61%), Positives = 34/43 (80%), Gaps = 0/43 (0%)
Query 44 VTDRTVRQMIADGRLRGYRSGTRLVRLRRDEVDGAMHPFGGAA 86
++ RT+RQMIADG+ RGYR+ RL R+ +EVD A+ PFGGAA
Sbjct 1 MSTRTIRQMIADGKFRGYRANARLFRVDLNEVDAALEPFGGAA 43
>gi|206600224|ref|YP_002241830.1| gp43 [Mycobacterium phage Ramsey]
gi|206287312|gb|ACI12655.1| gp43 [Mycobacterium phage Ramsey]
Length=70
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/45 (65%), Positives = 35/45 (78%), Gaps = 1/45 (2%)
Query 22 MADAPPLSRRYITISEAAEYLAVTDRTVRQMIADGRLRGYRSGTR 66
M DAP RR++ ++EAA YL VT RT+RQMIADGRL GYR+G R
Sbjct 1 MGDAPT-PRRFVKLAEAAAYLDVTPRTIRQMIADGRLTGYRAGAR 44
>gi|109392489|ref|YP_655618.1| gp39 [Mycobacterium phage Che12]
gi|91980639|gb|ABE67358.1| gp39 [Mycobacterium phage Che12]
Length=56
Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 35/50 (70%), Gaps = 0/50 (0%)
Query 34 TISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDEVDGAMHPFG 83
+I+E AEYL V+ +TVR IADGRL+ R G RL+R+ RD V+ + P G
Sbjct 6 SIAETAEYLGVSTKTVRNYIADGRLKAVRLGPRLIRVERDSVEALLRPIG 55
>gi|226307995|ref|YP_002767955.1| phage excisionase [Rhodococcus erythropolis PR4]
gi|226187112|dbj|BAH35216.1| putative phage excisionase [Rhodococcus erythropolis PR4]
Length=79
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/74 (38%), Positives = 47/74 (64%), Gaps = 1/74 (1%)
Query 14 SHETERPGMADAPPL-SRRYITISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRR 72
+ E E ++AP + + I+I+EAA ++V+ RT+R+ IADG++ G R G+RL+R+ R
Sbjct 6 TFEGETVSWSNAPKMPALNLISIAEAAAEVSVSTRTIRRYIADGKIEGVRIGSRLIRVNR 65
Query 73 DEVDGAMHPFGGAA 86
+D + P G A
Sbjct 66 KSLDALVTPMGVTA 79
>gi|342221235|gb|AEL17830.1| gp37 [Mycobacterium phage Turbido]
Length=56
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/51 (50%), Positives = 34/51 (67%), Gaps = 0/51 (0%)
Query 34 TISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDEVDGAMHPFGG 84
+I + A+YL V+ RTVR IADG+L+ R G RL+R+ RD V+ M P G
Sbjct 6 SIQQTADYLGVSTRTVRNYIADGKLKAVRLGPRLIRVERDSVEALMRPIGN 56
>gi|339752044|gb|AEJ92080.1| gp35 [Mycobacterium phage HelDan]
Length=59
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/53 (48%), Positives = 35/53 (67%), Gaps = 0/53 (0%)
Query 34 TISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDEVDGAMHPFGGAA 86
+I + A++L V+ RTVR IADG+L+ R G RL+R+ RD V+ M P G A
Sbjct 7 SIQQVADHLGVSTRTVRNYIADGKLKAVRLGPRLIRIERDSVEALMRPIGNWA 59
>gi|302858548|gb|ADL71294.1| gp34 [Mycobacterium phage Eagle]
Length=57
Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/51 (50%), Positives = 35/51 (69%), Gaps = 0/51 (0%)
Query 34 TISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDEVDGAMHPFGG 84
+I + A+YL V+ +TVR+ IADGRL+ R G RL+R+ RD V+ M P G
Sbjct 7 SIQQTADYLGVSVKTVRRYIADGRLKAIRLGPRLIRVERDSVEALMRPIGA 57
>gi|339781571|gb|AEK07402.1| gp35 [Mycobacterium phage Rockstar]
Length=59
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/53 (48%), Positives = 35/53 (67%), Gaps = 0/53 (0%)
Query 34 TISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDEVDGAMHPFGGAA 86
+I + A++L V+ RTVR IADG+L+ R G RL+R+ RD V+ M P G A
Sbjct 7 SIQQVADHLGVSTRTVRNYIADGKLKAVRLGPRLIRVERDSVEALMRPIGNWA 59
>gi|9625466|ref|NP_039700.1| predicted 6.3Kd protein [Mycobacterium phage L5]
gi|465186|sp|Q05246.1|VG36_BPML5 RecName: Full=Gene 36 protein; AltName: Full=Gp36
gi|15892|emb|CAA79412.1| gene 36 [Mycobacterium phage L5]
Length=56
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 34/50 (68%), Gaps = 0/50 (0%)
Query 34 TISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDEVDGAMHPFG 83
+I E A+YL V+ +TVR IADGRL+ R G RL+R+ R+ V+ M P G
Sbjct 6 SIQETADYLGVSTKTVRNYIADGRLKAVRLGPRLIRVERESVEELMRPIG 55
>gi|9630420|ref|NP_046852.1| hypothetical protein D29p34 [Mycobacterium phage D29]
gi|6136211|sp|O22001.1|VG36_BPMD2 RecName: Full=Gene 36 protein; AltName: Full=Gp36
gi|2358239|gb|AAB69100.1| similar to Mycobacteriophage l5 gene 36 protein encoded by the
sequence presented in GenBank Accession Number Z18946 [Mycobacterium
phage D29]
gi|3172284|gb|AAC18477.1| gp36 [Mycobacterium phage D29]
Length=56
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 35/50 (70%), Gaps = 0/50 (0%)
Query 34 TISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDEVDGAMHPFG 83
+I + A++L V+ +TVR+ IADGRL+ R G RL+R+ RD V+ M P G
Sbjct 6 SIQQTADFLGVSTKTVRRYIADGRLKAVRLGPRLIRVERDSVEALMRPIG 55
>gi|342221328|gb|AEL17922.1| gp37 [Mycobacterium phage Trixie]
Length=56
Score = 54.3 bits (129), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 33/50 (66%), Gaps = 0/50 (0%)
Query 34 TISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDEVDGAMHPFG 83
+I+E AEYL V TVR IA+G+L+ R G RL+R+ RD V+ M P G
Sbjct 6 SIAETAEYLGVHPNTVRNYIAEGKLKAVRLGPRLIRVERDSVEALMRPIG 55
>gi|336458857|gb|EGO37814.1| hypothetical protein MAPs_09160 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=35
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/35 (72%), Positives = 29/35 (83%), Gaps = 0/35 (0%)
Query 52 MIADGRLRGYRSGTRLVRLRRDEVDGAMHPFGGAA 86
MIADGRL GYRSG RLVR+ +E+D AM PFGGA+
Sbjct 1 MIADGRLAGYRSGNRLVRVDLNELDAAMKPFGGAS 35
>gi|339755125|gb|AEJ95135.1| gp38 [Mycobacterium phage JHC117]
gi|339755420|gb|AEJ95427.1| gp38 [Mycobacterium phage Microwolf]
gi|339781872|gb|AEK07700.1| gp38 [Mycobacterium phage Vix]
Length=60
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/53 (48%), Positives = 34/53 (65%), Gaps = 0/53 (0%)
Query 34 TISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDEVDGAMHPFGGAA 86
+I + A++L V+ RTVR IADGRL+ R G RL+R+ R V+ M P G A
Sbjct 8 SIQQVADHLGVSTRTVRNYIADGRLKAIRLGPRLIRVERSSVEELMRPIGNYA 60
>gi|192824213|ref|YP_001994854.1| gp37 [Mycobacterium phage Pukovnik]
gi|190610443|gb|ACE79963.1| gp37 [Mycobacterium phage Pukovnik]
Length=56
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 0/50 (0%)
Query 34 TISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDEVDGAMHPFG 83
+I + A+YL V+ +TVR IA G+L+ R G RL+R+ RD V+ M P G
Sbjct 6 SIQQTADYLGVSTKTVRNYIAAGKLKAVRLGPRLIRVERDSVEALMRPIG 55
>gi|336118698|ref|YP_004573469.1| putative phage excisionase [Microlunatus phosphovorus NM-1]
gi|334686481|dbj|BAK36066.1| putative phage excisionase [Microlunatus phosphovorus NM-1]
Length=64
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/61 (45%), Positives = 41/61 (68%), Gaps = 3/61 (4%)
Query 28 LSRRYITISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDEVDGAMHPF--GGA 85
L+RR +I+EAA+Y+ + +T+R+ IA G L YRSG RL+R+ ++VD + P G A
Sbjct 5 LTRRLASIAEAADYVPCSPKTIRRRIATGALPAYRSG-RLIRVDLNDVDAMLKPIPNGSA 63
Query 86 A 86
A
Sbjct 64 A 64
>gi|344043692|gb|EGV39380.1| hypothetical protein CgS9114_12976 [Corynebacterium glutamicum
S9114]
Length=70
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/62 (44%), Positives = 41/62 (67%), Gaps = 3/62 (4%)
Query 22 MADAPPLSR--RYITISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDEVDGAM 79
M+ P+SR R ITI +AA + +RT+R+ IA+GRL YR+G R++RL+ ++VD
Sbjct 1 MSKTAPISRHARMITIQQAAAEWQLGERTLRRHIAEGRLTAYRAG-RVIRLKPEDVDALF 59
Query 80 HP 81
P
Sbjct 60 TP 61
>gi|269929121|ref|YP_003321442.1| DNA binding domain-containing protein, excisionase family [Sphaerobacter
thermophilus DSM 20745]
gi|269788478|gb|ACZ40620.1| DNA binding domain protein, excisionase family [Sphaerobacter
thermophilus DSM 20745]
Length=122
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/44 (55%), Positives = 32/44 (73%), Gaps = 0/44 (0%)
Query 32 YITISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDEV 75
YI++SEAA+YLAV+ VR+ + GRLRG+R +RLRR EV
Sbjct 9 YISVSEAADYLAVSAAVVRRWVKAGRLRGHRVARLGIRLRRAEV 52
>gi|227487380|ref|ZP_03917696.1| hypothetical protein HMPREF0294_0530 [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227092604|gb|EEI27916.1| hypothetical protein HMPREF0294_0530 [Corynebacterium glucuronolyticum
ATCC 51867]
Length=67
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/64 (40%), Positives = 38/64 (60%), Gaps = 3/64 (4%)
Query 20 PGMADAPPLS-RRYITISEAAEYLAVTDRTVRQMIADGRLRGYR--SGTRLVRLRRDEVD 76
P A P + +++T EAAE L+VT RT+R+ + D R+R YR G+R VR + E++
Sbjct 2 PKTATNPAIELEKFVTYQEAAERLSVTTRTLRKWVQDRRIRAYRPYPGSRCVRFKVRELN 61
Query 77 GAMH 80
M
Sbjct 62 ELME 65
>gi|339755334|gb|AEJ95342.1| gp58 [Mycobacterium phage Marvin]
Length=97
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/49 (43%), Positives = 32/49 (66%), Gaps = 0/49 (0%)
Query 32 YITISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDEVDGAMH 80
+++I+EAAEYL V RTVR+ + GRL R ++VR+R ++D M
Sbjct 12 WLSIAEAAEYLGVNPRTVRRYMRLGRLEASRVSNKVVRIRLADIDRFME 60
>gi|227496707|ref|ZP_03926982.1| hypothetical protein HMPREF0058_0974 [Actinomyces urogenitalis
DSM 15434]
gi|226833804|gb|EEH66187.1| hypothetical protein HMPREF0058_0974 [Actinomyces urogenitalis
DSM 15434]
Length=58
Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 0/50 (0%)
Query 33 ITISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDEVDGAMHPF 82
I+ ++AA L V+ T+R+M+A G+LR YR G RL+R+ ++D A P
Sbjct 2 ISPAQAARVLGVSYSTIRRMVASGQLRAYRYGDRLIRIDPADLDKARRPV 51
>gi|255323768|ref|ZP_05364894.1| conserved hypothetical protein [Corynebacterium tuberculostearicum
SK141]
gi|255298948|gb|EET78239.1| conserved hypothetical protein [Corynebacterium tuberculostearicum
SK141]
Length=69
Score = 42.4 bits (98), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (67%), Gaps = 5/60 (8%)
Query 31 RYITISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDEVDGAMHP----FGGAA 86
+Y T+ +AA+ + + +RT+R+ IA+G+L YR+G R +RL+ ++VD P GGAA
Sbjct 11 QYETLQQAAKRVQLGERTLRRYIAEGKLVAYRAG-RTIRLKPEDVDALFTPTNAWTGGAA 69
>gi|311747168|ref|ZP_07720953.1| mobilizable transposon, TnpA protein [Algoriphagus sp. PR1]
gi|126578877|gb|EAZ83041.1| mobilizable transposon, TnpA protein [Algoriphagus sp. PR1]
Length=117
Score = 40.8 bits (94), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/81 (24%), Positives = 42/81 (52%), Gaps = 4/81 (4%)
Query 3 AFPSPSLGWTVSHETERPGMADAPPL----SRRYITISEAAEYLAVTDRTVRQMIADGRL 58
A+ +S++ E+ P+ ++ +T+ +AA+ L + RT+ ++I GR+
Sbjct 36 AYKVRKRNEKISNQIEKTKKIIIRPIEELNAKDILTVKDAAQLLNCSIRTIYRLIDSGRI 95
Query 59 RGYRSGTRLVRLRRDEVDGAM 79
+G R+ R++R E+D +
Sbjct 96 KGVNLSERMTRIKRSEIDKLL 116
>gi|309810564|ref|ZP_07704381.1| DNA binding domain protein, excisionase family [Dermacoccus sp.
Ellin185]
gi|308435478|gb|EFP59293.1| DNA binding domain protein, excisionase family [Dermacoccus sp.
Ellin185]
Length=70
Score = 40.8 bits (94), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/66 (38%), Positives = 37/66 (57%), Gaps = 1/66 (1%)
Query 22 MADAPPLSRRYI-TISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDEVDGAMH 80
M D P R + ++++AAE L + RT+R+ IA G L GYR G R +R+ EV+
Sbjct 1 MLDTRPAKRMQLASLADAAEQLGCSPRTIRRYIAAGTLTGYRVGPRNLRVDLAEVEALAR 60
Query 81 PFGGAA 86
P A+
Sbjct 61 PIPAAS 66
>gi|227549379|ref|ZP_03979428.1| hypothetical protein HMPREF0298_1692 [Corynebacterium lipophiloflavum
DSM 44291]
gi|227078564|gb|EEI16527.1| hypothetical protein HMPREF0298_1692 [Corynebacterium lipophiloflavum
DSM 44291]
Length=63
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/48 (38%), Positives = 34/48 (71%), Gaps = 1/48 (2%)
Query 32 YITISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDEVDGAM 79
Y TI + AE + +++RT+R+ IA+G+LR Y++G + +R+R ++ D
Sbjct 10 YRTIKQEAERVGLSERTLRRYIAEGKLRAYKAG-KTLRIRPEDTDAVF 56
>gi|146300387|ref|YP_001194978.1| hypothetical protein Fjoh_2632 [Flavobacterium johnsoniae UW101]
gi|146154805|gb|ABQ05659.1| hypothetical protein Fjoh_2632 [Flavobacterium johnsoniae UW101]
Length=184
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/66 (28%), Positives = 35/66 (54%), Gaps = 0/66 (0%)
Query 16 ETERPGMADAPPLSRRYITISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDEV 75
E E + + P +R +I++ EA + +T+ +++ G++ GTRLVR+ R +
Sbjct 44 EDEVKALINKIPENRAFISVPEAGMLFGIAKKTLYRLVGQGKIPSVNLGTRLVRIDRRVM 103
Query 76 DGAMHP 81
+G P
Sbjct 104 EGMFGP 109
>gi|339782869|gb|AEK08589.1| gp45 [Mycobacterium phage DLane]
Length=156
Score = 39.3 bits (90), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/43 (45%), Positives = 30/43 (70%), Gaps = 0/43 (0%)
Query 33 ITISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDEV 75
+T+ +AA YL VTDRTVR +A G + R G +L+R+R +++
Sbjct 10 LTMQQAATYLGVTDRTVRNYVARGLIPARRLGPKLLRIRIEDL 52
>gi|326331571|ref|ZP_08197861.1| putative DNA binding domain, excisionase family [Nocardioidaceae
bacterium Broad-1]
gi|325950827|gb|EGD42877.1| putative DNA binding domain, excisionase family [Nocardioidaceae
bacterium Broad-1]
Length=69
Score = 39.3 bits (90), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/54 (36%), Positives = 34/54 (63%), Gaps = 0/54 (0%)
Query 32 YITISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDEVDGAMHPFGGA 85
Y+++ EAAE + + +T+R+ IA G L YR G R +R++R +++ + H A
Sbjct 12 YLSLPEAAEVVGQSVKTLRRRIAAGTLVAYRFGPRAIRIKRTDLEASGHQVPSA 65
>gi|300780548|ref|ZP_07090403.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
33030]
gi|300533534|gb|EFK54594.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
33030]
Length=54
Score = 39.3 bits (90), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/43 (47%), Positives = 32/43 (75%), Gaps = 1/43 (2%)
Query 33 ITISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDEV 75
++++EAAE V+ +T+R+ IADG + GYR G RL+R+ DE+
Sbjct 1 MSLTEAAEQFGVSVKTLRRRIADGTIHGYRVG-RLIRVDLDEL 42
>gi|126665411|ref|ZP_01736393.1| hypothetical cytosolic protein [Marinobacter sp. ELB17]
gi|126630039|gb|EBA00655.1| hypothetical cytosolic protein [Marinobacter sp. ELB17]
Length=67
Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/58 (35%), Positives = 35/58 (61%), Gaps = 1/58 (1%)
Query 28 LSRRYITISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDEVDGAMHPFGGA 85
L R++++SE A+YL V++ TV + I + +R G R + ++DEVDG + G +
Sbjct 4 LDDRWLSVSEIAKYLGVSNDTVYRWIDKQTMPAHRVG-RAWKFKKDEVDGWVRNRGAS 60
>gi|269957135|ref|YP_003326924.1| excisionase family DNA binding domain-containing protein [Xylanimonas
cellulosilytica DSM 15894]
gi|269305816|gb|ACZ31366.1| DNA binding domain protein, excisionase family [Xylanimonas cellulosilytica
DSM 15894]
Length=66
Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/47 (45%), Positives = 33/47 (71%), Gaps = 1/47 (2%)
Query 33 ITISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDEVDGAM 79
+++ EAAE V+ +T+R+ IADG + GYR G RLVR+ D+V+ +
Sbjct 11 VSLREAAERFHVSIKTLRRRIADGTITGYRIG-RLVRVDLDDVEHEL 56
>gi|344223326|gb|EGV49814.1| putative phage excisionase [endosymbiont of Riftia pachyptila
(vent Ph05)]
Length=70
Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/58 (33%), Positives = 33/58 (57%), Gaps = 1/58 (1%)
Query 28 LSRRYITISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDEVDGAMHPFGGA 85
+ R++++ E YL V++ TV + I + +R G RL + ++DEVDG + G A
Sbjct 4 MEDRWLSVGEICTYLGVSNDTVYRWIEKHDMPAHRVG-RLWKFKKDEVDGWVKEDGAA 60
>gi|298375520|ref|ZP_06985477.1| mobilizable transposon, TnpA protein [Bacteroides sp. 3_1_19]
gi|298268020|gb|EFI09676.1| mobilizable transposon, TnpA protein [Bacteroides sp. 3_1_19]
Length=303
Score = 38.5 bits (88), Expect = 0.37, Method: Composition-based stats.
Identities = 18/65 (28%), Positives = 37/65 (57%), Gaps = 4/65 (6%)
Query 16 ETERPGMADAPPLS----RRYITISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLR 71
ET+ + P+S + Y++ EAA L ++ + V +M+ G+L+ +R +RL +R
Sbjct 51 ETKVQTIISEQPISDFKDKEYLSFKEAATLLGLSKQAVYKMVYAGKLQAFRISSRLSFIR 110
Query 72 RDEVD 76
+ ++D
Sbjct 111 KKDID 115
>gi|281355139|ref|ZP_06241633.1| DNA binding domain protein, excisionase family [Victivallis vadensis
ATCC BAA-548]
gi|281318019|gb|EFB02039.1| DNA binding domain protein, excisionase family [Victivallis vadensis
ATCC BAA-548]
Length=85
Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/57 (34%), Positives = 29/57 (51%), Gaps = 0/57 (0%)
Query 19 RPGMADAPPLSRRYITISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDEV 75
R D P R + I EAA+YL V+ + + I DG+L+ + G R R+ D +
Sbjct 20 RQSKEDEGPKFPRLVRIQEAADYLGVSKKAIHDYIKDGKLKRIKFGHRSARITADSI 76
>gi|343526012|ref|ZP_08762965.1| DNA binding domain protein, excisionase family [Streptococcus
constellatus subsp. pharyngis SK1060]
gi|343395422|gb|EGV07963.1| DNA binding domain protein, excisionase family [Streptococcus
constellatus subsp. pharyngis SK1060]
Length=64
Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/55 (30%), Positives = 35/55 (64%), Gaps = 1/55 (1%)
Query 22 MADAPPLSRRYITISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDEVD 76
MA+ + +++ + + A++L+V+ T+R I DG+L Y++G ++ + + EVD
Sbjct 1 MAELNQETEKWVNLEDIADHLSVSKDTIRIWIKDGKLPFYKAG-KMYKFKISEVD 54
>gi|167039358|ref|YP_001662343.1| DNA binding domain-containing protein [Thermoanaerobacter sp.
X514]
gi|300913996|ref|ZP_07131313.1| DNA binding domain protein, excisionase family [Thermoanaerobacter
sp. X561]
gi|307725319|ref|YP_003905070.1| DNA-binding domain-containing protein, excisionase family [Thermoanaerobacter
sp. X513]
gi|166853598|gb|ABY92007.1| DNA binding domain, excisionase family [Thermoanaerobacter sp.
X514]
gi|300890681|gb|EFK85826.1| DNA binding domain protein, excisionase family [Thermoanaerobacter
sp. X561]
gi|307582380|gb|ADN55779.1| DNA binding domain protein, excisionase family [Thermoanaerobacter
sp. X513]
Length=144
Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (55%), Gaps = 13/75 (17%)
Query 9 LGWTVSH--ETERPGMADAPPLSRRYITISEAAEYLAVTDRTVRQMIADGRLRGYRSGTR 66
LG ++S+ E ERP + + +SE A+ L V+++TV MI DGRL+ + G
Sbjct 51 LGKSLSNLNEKERPDV----------LNVSEVADLLRVSNQTVYNMIKDGRLKATKVGRE 100
Query 67 LVRLRRDEVDGAMHP 81
+R+D ++ + P
Sbjct 101 WKFMRKD-IESILDP 114
>gi|312281370|ref|YP_004022733.1| DNA binding domain-containing protein [Caldicellulosiruptor kristjanssonii
177R1B]
gi|312181899|gb|ADQ42068.1| DNA binding domain protein, excisionase family [Caldicellulosiruptor
kristjanssonii 177R1B]
Length=144
Score = 38.1 bits (87), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/28 (54%), Positives = 23/28 (83%), Gaps = 0/28 (0%)
Query 33 ITISEAAEYLAVTDRTVRQMIADGRLRG 60
+TI EAA+ L V+++T+R+MI DGRL+
Sbjct 4 LTIKEAAQALGVSEKTIRRMIKDGRLKA 31
>gi|298242032|ref|ZP_06965839.1| DNA binding domain protein, excisionase family [Ktedonobacter
racemifer DSM 44963]
gi|297555086|gb|EFH88950.1| DNA binding domain protein, excisionase family [Ktedonobacter
racemifer DSM 44963]
Length=200
Score = 38.1 bits (87), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/64 (32%), Positives = 35/64 (55%), Gaps = 0/64 (0%)
Query 16 ETERPGMADAPPLSRRYITISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDEV 75
ET+ P + S I++++A + L V+ TV +I G+L GYR + R+RR +V
Sbjct 118 ETDTPDHSKTSTSSEEMISLAKAGKILGVSSATVLNIIKAGKLPGYRIASEAWRVRRGDV 177
Query 76 DGAM 79
+ +
Sbjct 178 EAYL 181
>gi|167761900|ref|ZP_02434027.1| hypothetical protein BACSTE_00243 [Bacteroides stercoris ATCC
43183]
gi|167700270|gb|EDS16849.1| hypothetical protein BACSTE_00243 [Bacteroides stercoris ATCC
43183]
Length=303
Score = 37.7 bits (86), Expect = 0.56, Method: Composition-based stats.
Identities = 18/65 (28%), Positives = 36/65 (56%), Gaps = 4/65 (6%)
Query 16 ETERPGMADAPPLS----RRYITISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLR 71
ET+ + P+S + Y+ EAA L ++ + V +M+ G+L+ +R +RL +R
Sbjct 51 ETKVQTIISEQPISDFKDKEYLAFKEAATLLGLSKQAVYKMVYAGKLQAFRISSRLSFIR 110
Query 72 RDEVD 76
+ ++D
Sbjct 111 KKDID 115
>gi|188591845|ref|YP_001796444.1| putative DNA_binding excisionase [Cupriavidus taiwanensis]
gi|170939240|emb|CAP64283.1| putative DNA_binding excisionase [Cupriavidus taiwanensis LMG
19424]
Length=66
Score = 37.7 bits (86), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (65%), Gaps = 1/45 (2%)
Query 33 ITISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDEVDG 77
+T+SE AEYL V +RTV ++ A ++ ++ GT R +R E+D
Sbjct 11 LTVSEVAEYLKVNERTVYRLAAAKKIPAFKVGTAW-RFKRAELDA 54
>gi|223939803|ref|ZP_03631673.1| DNA binding domain protein, excisionase family [bacterium Ellin514]
gi|223891491|gb|EEF57982.1| DNA binding domain protein, excisionase family [bacterium Ellin514]
Length=136
Score = 37.7 bits (86), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/83 (31%), Positives = 41/83 (50%), Gaps = 9/83 (10%)
Query 3 AFPSPSLGWTVSHETERPGMADAPPLSRRYITISEAAEYLAVTDRTVRQMIADGRLRGYR 62
+ +P LG +TE G R++ +I EAAEYL V + T+ + + DG++ YR
Sbjct 31 SMNAPGLGAKAMEKTETTG--------RKWYSIKEAAEYLDVGEPTLYRWMRDGKI-TYR 81
Query 63 SGTRLVRLRRDEVDGAMHPFGGA 85
R ++++D M F A
Sbjct 82 KVGDSTRFWQEDLDAVMEVFHSA 104
>gi|213692057|ref|YP_002322643.1| hypothetical protein Blon_1175 [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|213523518|gb|ACJ52265.1| hypothetical protein Blon_1175 [Bifidobacterium longum subsp.
infantis ATCC 15697]
Length=77
Score = 37.7 bits (86), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/62 (33%), Positives = 34/62 (55%), Gaps = 3/62 (4%)
Query 18 ERPGMADAP--PLSRRY-ITISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDE 74
+ P MAD P P+ R +T+ EAA + ++ VR + G LR + G+ R+RR +
Sbjct 10 KEPDMADKPFVPVEHRLALTVPEAAALCGIPEKVVRAAVVHGDLRHFEKGSTTARIRRTD 69
Query 75 VD 76
++
Sbjct 70 LE 71
Lambda K H
0.321 0.135 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 131009627400
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40