BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2658c

Length=120
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15842198|ref|NP_337235.1|  hypothetical protein MT2734.1 [Myco...   251    3e-65
gi|15609795|ref|NP_217174.1|  prophage protein [Mycobacterium tub...   251    3e-65
gi|253798260|ref|YP_003031261.1|  phiRv2 phage protein [Mycobacte...   251    3e-65
gi|167967174|ref|ZP_02549451.1|  hypothetical protein MtubH3_0368...   130    8e-29
gi|301307858|ref|ZP_07213814.1|  two-component system sensor hist...  35.0    3.4  
gi|262382720|ref|ZP_06075857.1|  two-component system sensor hist...  35.0    3.4  
gi|256838767|ref|ZP_05544277.1|  two-component system sensor hist...  35.0    3.4  


>gi|15842198|ref|NP_337235.1| hypothetical protein MT2734.1 [Mycobacterium tuberculosis CDC1551]
 gi|254551712|ref|ZP_05142159.1| hypothetical protein Mtube_14849 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|294994247|ref|ZP_06799938.1| hypothetical protein Mtub2_06963 [Mycobacterium tuberculosis 
210]
 gi|13882486|gb|AAK47049.1| hypothetical protein MT2734.1 [Mycobacterium tuberculosis CDC1551]
Length=122

 Score =  251 bits (641),  Expect = 3e-65, Method: Compositional matrix adjust.
 Identities = 120/120 (100%), Positives = 120/120 (100%), Gaps = 0/120 (0%)

Query  1    MADAVKYVVMCNCDDEPGALIIAWIDDERPAGGHIQMRSNTRFTETQWGRHIEWKLECRA  60
            MADAVKYVVMCNCDDEPGALIIAWIDDERPAGGHIQMRSNTRFTETQWGRHIEWKLECRA
Sbjct  3    MADAVKYVVMCNCDDEPGALIIAWIDDERPAGGHIQMRSNTRFTETQWGRHIEWKLECRA  62

Query  61   CRKYAPISEMTAAAILDGFGAKLHELRTSTIPDADDPSIAEARHVIPFSALCLRLSQLGG  120
            CRKYAPISEMTAAAILDGFGAKLHELRTSTIPDADDPSIAEARHVIPFSALCLRLSQLGG
Sbjct  63   CRKYAPISEMTAAAILDGFGAKLHELRTSTIPDADDPSIAEARHVIPFSALCLRLSQLGG  122


>gi|15609795|ref|NP_217174.1| prophage protein [Mycobacterium tuberculosis H37Rv]
 gi|148662500|ref|YP_001284023.1| hypothetical protein MRA_2688 [Mycobacterium tuberculosis H37Ra]
 gi|148823849|ref|YP_001288603.1| phiRv2 prophage protein [Mycobacterium tuberculosis F11]
 27 more sequence titles
 Length=120

 Score =  251 bits (641),  Expect = 3e-65, Method: Compositional matrix adjust.
 Identities = 120/120 (100%), Positives = 120/120 (100%), Gaps = 0/120 (0%)

Query  1    MADAVKYVVMCNCDDEPGALIIAWIDDERPAGGHIQMRSNTRFTETQWGRHIEWKLECRA  60
            MADAVKYVVMCNCDDEPGALIIAWIDDERPAGGHIQMRSNTRFTETQWGRHIEWKLECRA
Sbjct  1    MADAVKYVVMCNCDDEPGALIIAWIDDERPAGGHIQMRSNTRFTETQWGRHIEWKLECRA  60

Query  61   CRKYAPISEMTAAAILDGFGAKLHELRTSTIPDADDPSIAEARHVIPFSALCLRLSQLGG  120
            CRKYAPISEMTAAAILDGFGAKLHELRTSTIPDADDPSIAEARHVIPFSALCLRLSQLGG
Sbjct  61   CRKYAPISEMTAAAILDGFGAKLHELRTSTIPDADDPSIAEARHVIPFSALCLRLSQLGG  120


>gi|253798260|ref|YP_003031261.1| phiRv2 phage protein [Mycobacterium tuberculosis KZN 1435]
 gi|254232767|ref|ZP_04926094.1| hypothetical protein TBCG_02598 [Mycobacterium tuberculosis C]
 gi|289746459|ref|ZP_06505837.1| phiRv2 prophage protein [Mycobacterium tuberculosis 02_1987]
 25 more sequence titles
 Length=121

 Score =  251 bits (641),  Expect = 3e-65, Method: Compositional matrix adjust.
 Identities = 120/120 (100%), Positives = 120/120 (100%), Gaps = 0/120 (0%)

Query  1    MADAVKYVVMCNCDDEPGALIIAWIDDERPAGGHIQMRSNTRFTETQWGRHIEWKLECRA  60
            MADAVKYVVMCNCDDEPGALIIAWIDDERPAGGHIQMRSNTRFTETQWGRHIEWKLECRA
Sbjct  2    MADAVKYVVMCNCDDEPGALIIAWIDDERPAGGHIQMRSNTRFTETQWGRHIEWKLECRA  61

Query  61   CRKYAPISEMTAAAILDGFGAKLHELRTSTIPDADDPSIAEARHVIPFSALCLRLSQLGG  120
            CRKYAPISEMTAAAILDGFGAKLHELRTSTIPDADDPSIAEARHVIPFSALCLRLSQLGG
Sbjct  62   CRKYAPISEMTAAAILDGFGAKLHELRTSTIPDADDPSIAEARHVIPFSALCLRLSQLGG  121


>gi|167967174|ref|ZP_02549451.1| hypothetical protein MtubH3_03682 [Mycobacterium tuberculosis 
H37Ra]
Length=95

 Score =  130 bits (326),  Expect = 8e-29, Method: Compositional matrix adjust.
 Identities = 60/63 (96%), Positives = 60/63 (96%), Gaps = 0/63 (0%)

Query  1   MADAVKYVVMCNCDDEPGALIIAWIDDERPAGGHIQMRSNTRFTETQWGRHIEWKLECRA  60
           MADAVKYVVMCNCDDEPGALIIAWIDDERPAGGHIQMRSNTRFTETQWGRHIEWKLECR 
Sbjct  2   MADAVKYVVMCNCDDEPGALIIAWIDDERPAGGHIQMRSNTRFTETQWGRHIEWKLECRG  61

Query  61  CRK  63
             K
Sbjct  62  MPK  64


>gi|301307858|ref|ZP_07213814.1| two-component system sensor histidine kinase [Bacteroides sp. 
20_3]
 gi|300834201|gb|EFK64815.1| two-component system sensor histidine kinase [Bacteroides sp. 
20_3]
Length=767

 Score = 35.0 bits (79),  Expect = 3.4, Method: Composition-based stats.
 Identities = 23/84 (28%), Positives = 38/84 (46%), Gaps = 6/84 (7%)

Query  5    VKYVVMCNCDDEPGALIIAWIDDERPAGGHIQMRSNTRFTETQWGRHIEWKLECRACRKY  64
            VKY      DDE   L++  I  ER   GH+   +      T+W + I+   + +  ++ 
Sbjct  486  VKYRSKTKWDDEWQTLLVTGIQVERDKEGHVTRYTGITINNTKWEKMIQ---QLKELKEK  542

Query  65   APISEMTAAAILDGFGAKLHELRT  88
            A +S+   +A L       HE+RT
Sbjct  543  AELSDRLKSAFLANMS---HEIRT  563


>gi|262382720|ref|ZP_06075857.1| two-component system sensor histidine kinase [Bacteroides sp. 
2_1_33B]
 gi|262295598|gb|EEY83529.1| two-component system sensor histidine kinase [Bacteroides sp. 
2_1_33B]
Length=767

 Score = 35.0 bits (79),  Expect = 3.4, Method: Composition-based stats.
 Identities = 23/84 (28%), Positives = 38/84 (46%), Gaps = 6/84 (7%)

Query  5    VKYVVMCNCDDEPGALIIAWIDDERPAGGHIQMRSNTRFTETQWGRHIEWKLECRACRKY  64
            VKY      DDE   L++  I  ER   GH+   +      T+W + I+   + +  ++ 
Sbjct  486  VKYRSKTKWDDEWQTLLVTGIQVERDKEGHVTRYTGITINNTKWEKMIQ---QLKELKEK  542

Query  65   APISEMTAAAILDGFGAKLHELRT  88
            A +S+   +A L       HE+RT
Sbjct  543  AELSDRLKSAFLANMS---HEIRT  563


>gi|256838767|ref|ZP_05544277.1| two-component system sensor histidine kinase [Parabacteroides 
sp. D13]
 gi|256739686|gb|EEU53010.1| two-component system sensor histidine kinase [Parabacteroides 
sp. D13]
Length=657

 Score = 35.0 bits (79),  Expect = 3.4, Method: Composition-based stats.
 Identities = 23/84 (28%), Positives = 38/84 (46%), Gaps = 6/84 (7%)

Query  5    VKYVVMCNCDDEPGALIIAWIDDERPAGGHIQMRSNTRFTETQWGRHIEWKLECRACRKY  64
            VKY      DDE   L++  I  ER   GH+   +      T+W + I+   + +  ++ 
Sbjct  376  VKYRSKTKWDDEWQTLLVTGIQVERDKEGHVTRYTGITINNTKWEKMIQ---QLKELKEK  432

Query  65   APISEMTAAAILDGFGAKLHELRT  88
            A +S+   +A L       HE+RT
Sbjct  433  AELSDRLKSAFLANMS---HEIRT  453



Lambda     K      H
   0.323    0.136    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128530997826


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40