BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2659c Length=375 Score E Sequences producing significant alignments: (Bits) Value gi|15842199|ref|NP_337236.1| integrase [Mycobacterium tuberculos... 766 0.0 gi|15609796|ref|NP_217175.1| phiRv2 prophage integrase [Mycobact... 764 0.0 gi|289444200|ref|ZP_06433944.1| probable phirv2 prophage integra... 588 5e-166 gi|240169740|ref|ZP_04748399.1| hypothetical protein MkanA1_1053... 456 2e-126 gi|326904271|gb|EGE51204.1| LOW QUALITY PROTEIN: phiRv2 phage in... 428 6e-118 gi|120403496|ref|YP_953325.1| phage integrase family protein [My... 405 6e-111 gi|258653657|ref|YP_003202813.1| integrase [Nakamurella multipar... 389 3e-106 gi|126434804|ref|YP_001070495.1| phage integrase family protein ... 388 7e-106 gi|145224480|ref|YP_001135158.1| phage integrase family protein ... 388 9e-106 gi|296171015|ref|ZP_06852499.1| integrase [Mycobacterium parascr... 380 1e-103 gi|254777686|ref|ZP_05219202.1| phage integrase family protein [... 366 3e-99 gi|336118700|ref|YP_004573471.1| putative integrase [Microlunatu... 347 3e-93 gi|41408866|ref|NP_961702.1| hypothetical protein MAP2768c [Myco... 337 2e-90 gi|336458855|gb|EGO37812.1| phage integrase family protein [Myco... 337 2e-90 gi|254821280|ref|ZP_05226281.1| phage integrase family protein [... 319 4e-85 gi|326331572|ref|ZP_08197862.1| integrase [Nocardioidaceae bacte... 295 1e-77 gi|192824211|ref|YP_001994852.1| gp35 [Mycobacterium phage Pukov... 265 1e-68 gi|126436488|ref|YP_001072179.1| phage integrase family protein ... 258 8e-67 gi|296170210|ref|ZP_06851803.1| integrase [Mycobacterium parascr... 256 4e-66 gi|339752045|gb|AEJ92081.1| gp33 [Mycobacterium phage HelDan] 255 8e-66 gi|309810567|ref|ZP_07704384.1| site-specific recombinase, phage... 252 7e-65 gi|339781870|gb|AEK07698.1| gp36 [Mycobacterium phage Vix] 252 8e-65 gi|120405318|ref|YP_955147.1| phage integrase family protein [My... 251 9e-65 gi|342221236|gb|AEL17831.1| gp34 [Mycobacterium phage Turbido] 249 5e-64 gi|339755123|gb|AEJ95133.1| gp36 [Mycobacterium phage JHC117] 249 7e-64 gi|9630419|ref|NP_046850.1| gp33 [Mycobacterium phage D29] >gi|3... 248 1e-63 gi|342221329|gb|AEL17923.1| gp35 [Mycobacterium phage Trixie] 247 2e-63 gi|302858546|gb|ADL71292.1| gp32 [Mycobacterium phage Eagle] 245 1e-62 gi|339755418|gb|AEJ95425.1| gp36 [Mycobacterium phage Microwolf] 245 1e-62 gi|109392486|ref|YP_655615.1| gp36 [Mycobacterium phage Che12] >... 243 3e-62 gi|226307996|ref|YP_002767956.1| integrase [Rhodococcus erythrop... 242 9e-62 gi|9625463|ref|NP_039697.1| observed 41.8Kd protein [Mycobacteri... 239 6e-61 gi|291439062|ref|ZP_06578452.1| integrase [Streptomyces ghanaens... 239 6e-61 gi|339781570|gb|AEK07401.1| gp33 [Mycobacterium phage Rockstar] 238 9e-61 gi|29830271|ref|NP_824905.1| integrase [Streptomyces avermitilis... 236 5e-60 gi|118464288|ref|YP_880725.1| integrase [Mycobacterium avium 104... 236 7e-60 gi|328884043|emb|CCA57282.1| integrase [Streptomyces venezuelae ... 235 9e-60 gi|317126229|ref|YP_004100341.1| integrase [Intrasporangium calv... 234 1e-59 gi|15856|emb|CAA49810.1| integrase [Mycobacterium phage D29] >gi... 229 4e-58 gi|119952269|ref|YP_949919.1| integrase [Arthrobacter aurescens ... 228 2e-57 gi|138563|sp|P25426.1|VINT_BPMFR RecName: Full=Integrase >gi|150... 227 3e-57 gi|88856274|ref|ZP_01130934.1| integrase [marine actinobacterium... 227 3e-57 gi|61106482|gb|AAX39006.1| int-OPT [synthetic construct] 222 9e-56 gi|62195116|ref|YP_220445.1| hypothetical protein pMR2_03 [Micro... 221 1e-55 gi|333026004|ref|ZP_08454068.1| putative integrase [Streptomyces... 219 4e-55 gi|254384553|ref|ZP_04999893.1| integrase [Streptomyces sp. Mg1]... 219 5e-55 gi|227876810|ref|ZP_03994919.1| phage integrase family protein [... 218 2e-54 gi|307701539|ref|ZP_07638556.1| site-specific recombinase, phage... 216 6e-54 gi|324999072|ref|ZP_08120184.1| phage integrase [Pseudonocardia ... 214 3e-53 gi|219646794|gb|ACL30946.1| integrase [Integrating expression ve... 212 9e-53 >gi|15842199|ref|NP_337236.1| integrase [Mycobacterium tuberculosis CDC1551] gi|13882487|gb|AAK47050.1| integrase [Mycobacterium tuberculosis CDC1551] Length=386 Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/375 (100%), Positives = 375/375 (100%), Gaps = 0/375 (0%) Query 1 VTQTGKRQRRKFGRIRQFNSGRWQASYTGPDGRVYIAPKTFNAKIDAEAWLTDRRREIDR 60 VTQTGKRQRRKFGRIRQFNSGRWQASYTGPDGRVYIAPKTFNAKIDAEAWLTDRRREIDR Sbjct 12 VTQTGKRQRRKFGRIRQFNSGRWQASYTGPDGRVYIAPKTFNAKIDAEAWLTDRRREIDR 71 Query 61 QLWSPASGQEDRPGAPFGEYAEGWLKQRGIKDRTRAHYRKLLDNHILATFADTDLRDITP 120 QLWSPASGQEDRPGAPFGEYAEGWLKQRGIKDRTRAHYRKLLDNHILATFADTDLRDITP Sbjct 72 QLWSPASGQEDRPGAPFGEYAEGWLKQRGIKDRTRAHYRKLLDNHILATFADTDLRDITP 131 Query 121 AAVRRWYATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHKIRPA 180 AAVRRWYATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHKIRPA Sbjct 132 AAVRRWYATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHKIRPA 191 Query 181 TLDELETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVARVRRAVVRVGEG 240 TLDELETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVARVRRAVVRVGEG Sbjct 192 TLDELETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVARVRRAVVRVGEG 251 Query 241 FKVTTPKSDAGVRDISIPPHLIPAIEDHLHKHVNPGRESLLFPSVNDPNRHLAPSALYRM 300 FKVTTPKSDAGVRDISIPPHLIPAIEDHLHKHVNPGRESLLFPSVNDPNRHLAPSALYRM Sbjct 252 FKVTTPKSDAGVRDISIPPHLIPAIEDHLHKHVNPGRESLLFPSVNDPNRHLAPSALYRM 311 Query 301 FYKARKAAGRPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAKGRDR 360 FYKARKAAGRPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAKGRDR Sbjct 312 FYKARKAAGRPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAKGRDR 371 Query 361 EIAALLSKLAENQEM 375 EIAALLSKLAENQEM Sbjct 372 EIAALLSKLAENQEM 386 >gi|15609796|ref|NP_217175.1| phiRv2 prophage integrase [Mycobacterium tuberculosis H37Rv] gi|148662501|ref|YP_001284024.1| integrase [Mycobacterium tuberculosis H37Ra] gi|148823850|ref|YP_001288604.1| phiRv2 prophage integrase [Mycobacterium tuberculosis F11] 59 more sequence titles Length=375 Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/375 (99%), Positives = 375/375 (100%), Gaps = 0/375 (0%) Query 1 VTQTGKRQRRKFGRIRQFNSGRWQASYTGPDGRVYIAPKTFNAKIDAEAWLTDRRREIDR 60 +TQTGKRQRRKFGRIRQFNSGRWQASYTGPDGRVYIAPKTFNAKIDAEAWLTDRRREIDR Sbjct 1 MTQTGKRQRRKFGRIRQFNSGRWQASYTGPDGRVYIAPKTFNAKIDAEAWLTDRRREIDR 60 Query 61 QLWSPASGQEDRPGAPFGEYAEGWLKQRGIKDRTRAHYRKLLDNHILATFADTDLRDITP 120 QLWSPASGQEDRPGAPFGEYAEGWLKQRGIKDRTRAHYRKLLDNHILATFADTDLRDITP Sbjct 61 QLWSPASGQEDRPGAPFGEYAEGWLKQRGIKDRTRAHYRKLLDNHILATFADTDLRDITP 120 Query 121 AAVRRWYATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHKIRPA 180 AAVRRWYATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHKIRPA Sbjct 121 AAVRRWYATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHKIRPA 180 Query 181 TLDELETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVARVRRAVVRVGEG 240 TLDELETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVARVRRAVVRVGEG Sbjct 181 TLDELETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVARVRRAVVRVGEG 240 Query 241 FKVTTPKSDAGVRDISIPPHLIPAIEDHLHKHVNPGRESLLFPSVNDPNRHLAPSALYRM 300 FKVTTPKSDAGVRDISIPPHLIPAIEDHLHKHVNPGRESLLFPSVNDPNRHLAPSALYRM Sbjct 241 FKVTTPKSDAGVRDISIPPHLIPAIEDHLHKHVNPGRESLLFPSVNDPNRHLAPSALYRM 300 Query 301 FYKARKAAGRPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAKGRDR 360 FYKARKAAGRPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAKGRDR Sbjct 301 FYKARKAAGRPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAKGRDR 360 Query 361 EIAALLSKLAENQEM 375 EIAALLSKLAENQEM Sbjct 361 EIAALLSKLAENQEM 375 >gi|289444200|ref|ZP_06433944.1| probable phirv2 prophage integrase [Mycobacterium tuberculosis T46] gi|289417119|gb|EFD14359.1| probable phirv2 prophage integrase [Mycobacterium tuberculosis T46] Length=291 Score = 588 bits (1516), Expect = 5e-166, Method: Compositional matrix adjust. Identities = 290/291 (99%), Positives = 291/291 (100%), Gaps = 0/291 (0%) Query 85 LKQRGIKDRTRAHYRKLLDNHILATFADTDLRDITPAAVRRWYATTAVGTPTMRAHSYSL 144 +KQRGIKDRTRAHYRKLLDNHILATFADTDLRDITPAAVRRWYATTAVGTPTMRAHSYSL Sbjct 1 MKQRGIKDRTRAHYRKLLDNHILATFADTDLRDITPAAVRRWYATTAVGTPTMRAHSYSL 60 Query 145 LRAIMQTALADDLIDSNPCRISGASTARRVHKIRPATLDELETITKAMPDPYQAFVLMAA 204 LRAIMQTALADDLIDSNPCRISGASTARRVHKIRPATLDELETITKAMPDPYQAFVLMAA Sbjct 61 LRAIMQTALADDLIDSNPCRISGASTARRVHKIRPATLDELETITKAMPDPYQAFVLMAA 120 Query 205 WLAMRYGELTELRRKDIDLHGEVARVRRAVVRVGEGFKVTTPKSDAGVRDISIPPHLIPA 264 WLAMRYGELTELRRKDIDLHGEVARVRRAVVRVGEGFKVTTPKSDAGVRDISIPPHLIPA Sbjct 121 WLAMRYGELTELRRKDIDLHGEVARVRRAVVRVGEGFKVTTPKSDAGVRDISIPPHLIPA 180 Query 265 IEDHLHKHVNPGRESLLFPSVNDPNRHLAPSALYRMFYKARKAAGRPDLRVHDLRHSGAV 324 IEDHLHKHVNPGRESLLFPSVNDPNRHLAPSALYRMFYKARKAAGRPDLRVHDLRHSGAV Sbjct 181 IEDHLHKHVNPGRESLLFPSVNDPNRHLAPSALYRMFYKARKAAGRPDLRVHDLRHSGAV 240 Query 325 LAASTGATLAELMQRLGHSTAGAALRYQHAAKGRDREIAALLSKLAENQEM 375 LAASTGATLAELMQRLGHSTAGAALRYQHAAKGRDREIAALLSKLAENQEM Sbjct 241 LAASTGATLAELMQRLGHSTAGAALRYQHAAKGRDREIAALLSKLAENQEM 291 >gi|240169740|ref|ZP_04748399.1| hypothetical protein MkanA1_10532 [Mycobacterium kansasii ATCC 12478] Length=373 Score = 456 bits (1174), Expect = 2e-126, Method: Compositional matrix adjust. Identities = 235/375 (63%), Positives = 281/375 (75%), Gaps = 11/375 (2%) Query 8 QRRKFGRIRQFNSGRWQASYTGPDGRVYIAPKTFNAKIDAEAWLTDRRREIDRQLWSPAS 67 ++R FG IR+ SGR+Q +T PDG APKTF A+IDAEAWLTDRRREID +LW+PAS Sbjct 3 RKRSFGNIRKLPSGRYQVRFTDPDGNYITAPKTFAARIDAEAWLTDRRREIDAKLWNPAS 62 Query 68 -GQEDRPGAPFGEYAEGWLKQRG-----IKDRTRAHYRKLLDNHILATFADTDLRDITPA 121 + D+ FG YA WL R IK RTR HY+ +LD+H++ TF L ITP Sbjct 63 VAKPDK--ITFGAYASAWLAGRQVAGRPIKQRTREHYQAILDDHLIETFGTRQLAAITPK 120 Query 122 AVRRWYATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHKIRPAT 181 AVR WYA T PTMR+H+YSLLR IM +A+ D+LID+NPCRI GA A+RVHKIRPA+ Sbjct 121 AVREWYAVTLTNRPTMRSHAYSLLRTIMGSAVNDELIDTNPCRIVGAGRAKRVHKIRPAS 180 Query 182 LDELETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVARVRRAVVRVGEG- 240 +DEL T+T AMP+ + V +A+W A+R+GE ELRR DIDL E+ RVRRA VR G G Sbjct 181 VDELATLTNAMPERLRLMVTLASWCALRFGETVELRRSDIDLSDEMIRVRRAAVRTGGGS 240 Query 241 FKVTTPKSDAGVRDISIPPHLIPAIEDHLHKHVNPGRESLLFPSVNDPNRHLAPSALYRM 300 F+VTTPKSDAGVRD++IPPH+IP IEDHL K+V R+SLLF + N HL PS L R Sbjct 241 FQVTTPKSDAGVRDVAIPPHIIPQIEDHLSKYVGSKRDSLLFAAQN--GGHLQPSTLTRH 298 Query 301 FYKARKAAGRPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAKGRDR 360 +YKARKAA R DLR HDLRHSGAVLAA+TGA+LAELM RLGHST AA+RYQHAA+GRDR Sbjct 299 WYKARKAANRDDLRWHDLRHSGAVLAAATGASLAELMARLGHSTPQAAMRYQHAAQGRDR 358 Query 361 EIAALLSKLAENQEM 375 EIAALLSKLA N+E+ Sbjct 359 EIAALLSKLAANREL 373 >gi|326904271|gb|EGE51204.1| LOW QUALITY PROTEIN: phiRv2 phage integrase [Mycobacterium tuberculosis W-148] Length=376 Score = 428 bits (1101), Expect = 6e-118, Method: Compositional matrix adjust. Identities = 206/207 (99%), Positives = 207/207 (100%), Gaps = 0/207 (0%) Query 1 VTQTGKRQRRKFGRIRQFNSGRWQASYTGPDGRVYIAPKTFNAKIDAEAWLTDRRREIDR 60 +TQTGKRQRRKFGRIRQFNSGRWQASYTGPDGRVYIAPKTFNAKIDAEAWLTDRRREIDR Sbjct 1 MTQTGKRQRRKFGRIRQFNSGRWQASYTGPDGRVYIAPKTFNAKIDAEAWLTDRRREIDR 60 Query 61 QLWSPASGQEDRPGAPFGEYAEGWLKQRGIKDRTRAHYRKLLDNHILATFADTDLRDITP 120 QLWSPASGQEDRPGAPFGEYAEGWLKQRGIKDRTRAHYRKLLDNHILATFADTDLRDITP Sbjct 61 QLWSPASGQEDRPGAPFGEYAEGWLKQRGIKDRTRAHYRKLLDNHILATFADTDLRDITP 120 Query 121 AAVRRWYATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHKIRPA 180 AAVRRWYATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHKIRPA Sbjct 121 AAVRRWYATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHKIRPA 180 Query 181 TLDELETITKAMPDPYQAFVLMAAWLA 207 TLDELETITKAMPDPYQAFVLMAAWLA Sbjct 181 TLDELETITKAMPDPYQAFVLMAAWLA 207 >gi|120403496|ref|YP_953325.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|119956314|gb|ABM13319.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] Length=385 Score = 405 bits (1041), Expect = 6e-111, Method: Compositional matrix adjust. Identities = 221/378 (59%), Positives = 263/378 (70%), Gaps = 13/378 (3%) Query 7 RQRRKFGRIRQFNSGRWQASYTGPDGRVYIAPKTFNAKIDAEAWLTDRRREIDRQLWSPA 66 RQ FG ++Q SGR++A Y GPD R Y AP TF AK DA WL R+ EI + W+P Sbjct 10 RQAGTFGTVQQLPSGRYRAMYYGPDRRRYKAPTTFRAKADARGWLALRQAEIISKAWTPP 69 Query 67 SGQEDRPGAPFGEYAEGWLKQRGIKDRTRAHYRKLLDNHILATFADTDLRDITPAAVRRW 126 F +YA W+KQR +K TR HY LL+ H+++ F L IT VR W Sbjct 70 EAAPKITRTTFADYARNWIKQRDLKQHTREHYEVLLERHLISPFGSLPLSSITVDDVRGW 129 Query 127 YATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHKIRPATLDELE 186 YAT A TPT+R+H+Y LLR I+ TA +D I SNPC I GA T +RV KIRPATL E+E Sbjct 130 YATFATETPTLRSHTYGLLRTILGTAASDGKISSNPCLIRGAGTTKRVKKIRPATLPEIE 189 Query 187 TITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDI------DLHGE-----VARVRRAVV 235 IT MP+ YQA +L+AAW A+R+GELTELRRKDI DL GE V RV RAVV Sbjct 190 KITTEMPEQYQAMILLAAWCALRFGELTELRRKDIVLTTTVDLEGETVHMGVIRVERAVV 249 Query 236 RVGEGFKVTTPKSDAGVRDISIPPHLIPAIEDHLHKHVNPGRESLLFPSVNDPNRHLAPS 295 RV +G+ VTTPKSDAG RD++IPPHL+P I DHL HV+ G ++LLFP+ + RHLAP+ Sbjct 250 RVDDGYLVTTPKSDAGTRDVAIPPHLVPVIHDHLAVHVDGGPDALLFPAAH--GRHLAPA 307 Query 296 ALYRMFYKARKAAGRPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAA 355 LYR FYKAR AA RPDLR HDLRHSGAVLAA+TGATLAELM RLGHST AA+RYQHAA Sbjct 308 TLYRQFYKARVAADRPDLRFHDLRHSGAVLAAATGATLAELMARLGHSTPQAAMRYQHAA 367 Query 356 KGRDREIAALLSKLAENQ 373 +GRD+ IAA LSK+A Q Sbjct 368 QGRDQAIAAALSKIALGQ 385 >gi|258653657|ref|YP_003202813.1| integrase [Nakamurella multipartita DSM 44233] gi|258556882|gb|ACV79824.1| integrase family protein [Nakamurella multipartita DSM 44233] Length=368 Score = 389 bits (1000), Expect = 3e-106, Method: Compositional matrix adjust. Identities = 211/369 (58%), Positives = 257/369 (70%), Gaps = 10/369 (2%) Query 8 QRRKFGRIRQFNSGRWQASYTGPDGRVYIAPKTFNAKIDAEAWLTDRRREIDRQLWSPAS 67 ++R FG+I + S R++A YTGPD +++ AP TF + DAEAWLTD RR I W+P + Sbjct 3 KKRGFGQILRLPSKRYRARYTGPDTQLHNAPSTFETREDAEAWLTDERRLIAAGTWAPPA 62 Query 68 GQ----EDRPGAPFGEYAEGWLKQRGIKDRTRAHYRKLLDNHILATFADTDLRDITPAAV 123 + E R FG+YA WL R IK RTR+HY LLD IL F + L+ ITP V Sbjct 63 HRTKTIEHRT---FGDYATDWLTARPIKPRTRSHYAMLLDKLILPGFESSPLKTITPDQV 119 Query 124 RRWYATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHKIRPATLD 183 R W+ TPT+RAH+YSLLRAI+ A+ D +I +NP I GA A+RVHKI+PA+L Sbjct 120 RAWHTRLGDSTPTLRAHAYSLLRAILTDAVHDGIIPANPAHIRGAGNAKRVHKIKPASLA 179 Query 184 ELETITKAMPDP-YQAFVLMAAWLAMRYGELTELRRKDIDLHGEVARVRRAVVRVGEGFK 242 EL + AMPD YQ L+AAW +R+GELTELRR DID V VRR VVR Sbjct 180 ELGVLVGAMPDAKYQLMTLLAAWCGLRFGELTELRRSDIDAKNGVIHVRRGVVRTDGEVI 239 Query 243 VTTPKSDAGVRDISIPPHLIPAIEDHLHKHVNPGRESLLFPSVNDPNRHLAPSALYRMFY 302 V TPKS AG RD++IPPHL+PA+ D+L +VN GR+ LLFP+ D HLAPS+LYR+FY Sbjct 240 VGTPKSAAGHRDVNIPPHLLPAVRDYLKANVN-GRDGLLFPAA-DGVSHLAPSSLYRVFY 297 Query 303 KARKAAGRPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAKGRDREI 362 ARK AGRPDLR HDLRH+GAVLAA+TGA+LAELM RLGHST GAALRYQHAA+GRD EI Sbjct 298 PARKKAGRPDLRWHDLRHTGAVLAAATGASLAELMGRLGHSTPGAALRYQHAAQGRDAEI 357 Query 363 AALLSKLAE 371 A LS+L E Sbjct 358 ARRLSQLVE 366 >gi|126434804|ref|YP_001070495.1| phage integrase family protein [Mycobacterium sp. JLS] gi|126234604|gb|ABN98004.1| phage integrase family protein [Mycobacterium sp. JLS] Length=388 Score = 388 bits (997), Expect = 7e-106, Method: Compositional matrix adjust. Identities = 212/386 (55%), Positives = 257/386 (67%), Gaps = 25/386 (6%) Query 7 RQRRKFGRIRQFNSGRWQASYTGPDGRVYIAPKTFNAKIDAEAWLTDRRREIDRQLWSP- 65 R FG + Q + G ++A +TGPDGR Y AP TF K DA AWL+ ++ +I R+ W+P Sbjct 3 RTSGTFGTVEQLSGGHYRARFTGPDGRRYKAPTTFLTKGDARAWLSLQQADIIRKAWTPP 62 Query 66 -ASGQEDRPGAPFGEYAEGWLKQR-----GIKDRTRAHYRKLLDNHILATFADTDLRDIT 119 A+ DR F +YA WL R +K RTR HY LL HI TF + IT Sbjct 63 EATRTVDRK-LTFRDYATVWLYNRRVKGEALKMRTREHYAWLLAEHIYPTFGAMPVGSIT 121 Query 120 PAAVRRWYATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHKIRP 179 VR W+ TPT R+H+Y LL AIM TA+AD +PC I GA T+RRV KIRP Sbjct 122 ADDVRAWHNRMGKATPTARSHAYGLLNAIMNTAVADGKAALSPCVIRGAGTSRRVKKIRP 181 Query 180 ATLDELETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVAR---------- 229 ATL ELE +T AMP PYQA +L+A+W A+R+GELTELRRKD++L V R Sbjct 182 ATLAELEALTNAMPAPYQAMILLASWCALRFGELTELRRKDVELSTSVERDDQGQEVTVH 241 Query 230 -----VRRAVVRVGEGFKVTTPKSDAGVRDISIPPHLIPAIEDHLHKHVNPGRESLLFPS 284 V RAVVR G+G++VTTPKSDAG RD++IPPHL+P IE HL HV ++LLFP+ Sbjct 242 EGLIHVERAVVRAGDGYEVTTPKSDAGTRDVAIPPHLVPVIEAHLADHVGIWGDALLFPA 301 Query 285 VNDPNRHLAPSALYRMFYKARKAAGRPDLRVHDLRHSGAVLAASTGATLAELMQRLGHST 344 + HLAP+ LYR FY AR AAGRPDLR HDLRHSGAVLAA TGATLAELM RLGHST Sbjct 302 KH--GGHLAPATLYRRFYTARTAAGRPDLRFHDLRHSGAVLAAQTGATLAELMARLGHST 359 Query 345 AGAALRYQHAAKGRDREIAALLSKLA 370 AA+RYQHAA+GRDR+IAA LS++A Sbjct 360 PQAAMRYQHAAQGRDRQIAAALSRIA 385 >gi|145224480|ref|YP_001135158.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK] gi|145216966|gb|ABP46370.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK] Length=379 Score = 388 bits (996), Expect = 9e-106, Method: Compositional matrix adjust. Identities = 228/376 (61%), Positives = 268/376 (72%), Gaps = 11/376 (2%) Query 4 TGKRQRR--KFGRIRQFNSGRWQASYTGPDGRVYIAPKTFNAKIDAEAWLTDRRREIDRQ 61 TG++ R FG + + +G ++A Y GPDGR + AP F K DA AWL R EI Q Sbjct 5 TGRKDRAPGTFGSVDKLATG-YRARYFGPDGRRHKAPVLFLTKTDARAWLAQRHSEIVAQ 63 Query 62 LWSPASGQEDRPGAPFGEYAEGWLKQRGI-----KDRTRAHYRKLLDNHILATFADTDLR 116 W+P + E P F EYA+ WL R + KDRTR HY+ LLD+HI ATF L Sbjct 64 QWTPPNAVE-VPKTTFTEYADQWLLTRQVAGRPLKDRTREHYQALLDDHITATFGALPLA 122 Query 117 DITPAAVRRWYATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHK 176 IT VR+WYA T PTMR+H+Y LLR I+ TA++D I NPC I GA TA+RVHK Sbjct 123 SITADDVRQWYARTLTDKPTMRSHAYGLLRTILATAVSDGKISVNPCSIRGAGTAKRVHK 182 Query 177 IRPATLDELETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVARVRRAVVR 236 +RPAT+ E+ TI AMP + VL+AAWLAMR+GELTELRRKDIDL EV RVRRAVVR Sbjct 183 VRPATVGEIGTIADAMPAQWSLMVLLAAWLAMRFGELTELRRKDIDLADEVVRVRRAVVR 242 Query 237 VGEGFKVTTPKSDAGVRDISIPPHLIPAIEDHLHKHVNPGRESLLFPSVNDPNRHLAPSA 296 +GFKVTTPKSDAG+RDI+IPPHLIP IE HL +HV ++LLFP+V HLAP+ Sbjct 243 TDDGFKVTTPKSDAGIRDIAIPPHLIPPIEAHLSQHVGAKADALLFPAVG--GGHLAPAT 300 Query 297 LYRMFYKARKAAGRPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAK 356 LYR FY AR+ A R DLR HDLRHSGAVLAA+TGATLAELM RLGHST AALRYQHAA+ Sbjct 301 LYRRFYTARERANRKDLRWHDLRHSGAVLAAATGATLAELMARLGHSTPQAALRYQHAAQ 360 Query 357 GRDREIAALLSKLAEN 372 GRDR+IAALLSK+AEN Sbjct 361 GRDRQIAALLSKIAEN 376 >gi|296171015|ref|ZP_06852499.1| integrase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894411|gb|EFG74159.1| integrase [Mycobacterium parascrofulaceum ATCC BAA-614] Length=379 Score = 380 bits (977), Expect = 1e-103, Method: Compositional matrix adjust. Identities = 226/377 (60%), Positives = 263/377 (70%), Gaps = 11/377 (2%) Query 4 TGKRQRRK--FGRIRQFNSGRWQASYTGPDGRVYIAPKTFNAKIDAEAWLTDRRREIDRQ 61 TG++ R FG + + +G ++A Y GPDGR Y AP F K DA +WL+ R+ EI + Sbjct 5 TGRKDRASGTFGSVDKLATG-YRARYYGPDGRRYKAPTLFLTKRDARSWLSLRQAEIVAR 63 Query 62 LW-SPASGQEDRPGAPFGEYAEGWLKQRGI-----KDRTRAHYRKLLDNHILATFADTDL 115 W P + E P F EYA WL R + KDRTR HYRKLLD HI TF + Sbjct 64 AWMPPGADAEPAPKLTFTEYATQWLATRQVGGRPLKDRTREHYRKLLDEHIEPTFGLLPI 123 Query 116 RDITPAAVRRWYATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVH 175 IT VR WYA T PTMR+H+Y LLR IM TA +D + +NPC I GA TA+RVH Sbjct 124 ASITADDVRAWYAATLTDKPTMRSHAYGLLRTIMATAASDGKVGANPCVIRGAGTAKRVH 183 Query 176 KIRPATLDELETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVARVRRAVV 235 K++PAT+ E+ I AMP + VL+AAWLAMR+GELTELRRKDIDL EV RVRRAVV Sbjct 184 KVKPATVSEIGVIADAMPAQWSLMVLLAAWLAMRFGELTELRRKDIDLTDEVVRVRRAVV 243 Query 236 RVGEGFKVTTPKSDAGVRDISIPPHLIPAIEDHLHKHVNPGRESLLFPSVNDPNRHLAPS 295 R +GF VTTPKSDAGVRD++IPPHLIPAIE HL KHV ++LLFP+V HLAP+ Sbjct 244 RTDDGFVVTTPKSDAGVRDVAIPPHLIPAIEAHLSKHVGAKSDALLFPAVG--GGHLAPA 301 Query 296 ALYRMFYKARKAAGRPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAA 355 LYR FY AR A R DLR HDLRHSGAVLAA+TGATLAELM RLGHST AA+RYQHAA Sbjct 302 TLYRRFYTARAEADRNDLRWHDLRHSGAVLAAATGATLAELMARLGHSTPAAAMRYQHAA 361 Query 356 KGRDREIAALLSKLAEN 372 +GRDREIAALLSKLA N Sbjct 362 QGRDREIAALLSKLAAN 378 >gi|254777686|ref|ZP_05219202.1| phage integrase family protein [Mycobacterium avium subsp. avium ATCC 25291] Length=361 Score = 366 bits (940), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 206/353 (59%), Positives = 248/353 (71%), Gaps = 13/353 (3%) Query 27 YTGPDGRVYIAPKTFNAKIDAEAWLTDRRREIDRQLWSPASGQEDR-PGAPFGEYAEGWL 85 Y GPDGR Y APKTF + DA WL+ R+ EI R+ W P E P F Y++ W+ Sbjct 2 YHGPDGRRYTAPKTFLTEKDARGWLSLRQAEIIRKAWVPPEADEQPVPKLTFETYSKTWM 61 Query 86 KQRGIKDRTRAHYRKLLDNHILATFADTDLRDITPAAVRRWYATTAVGTPTMRAHSYSLL 145 QR +KDRTR HY KLL +HI+ TF + IT VR W+A TPT+RAH Y LL Sbjct 62 AQRDLKDRTRQHYAKLLGDHIVPTFGGLPIASITADDVRAWHAKLGANTPTLRAHCYGLL 121 Query 146 RAIMQTALADDLIDSNPCRISGASTARRVHKIRPATLDELETITKAMPDPYQAFVLMAAW 205 R IM TAL+D I NPC I GA +ARRVHKIRPATLDE+ TI + MP+ Y+A VL+AAW Sbjct 122 RTIMGTALSDGKIKVNPCVIRGAGSARRVHKIRPATLDEIATIAEEMPERYRAMVLLAAW 181 Query 206 LAMRYGELTELRRKDI---------DLHGEVARVRRAVVRVGEGFKVTTPKSDAGVRDIS 256 A+R+GELTELRR+DI D +G V R V +GF++TTPKSDAG RD+ Sbjct 182 CALRFGELTELRRRDIIIVDADDPDDTYGVVRVERAVVRVE-QGFQITTPKSDAGRRDVE 240 Query 257 IPPHLIPAIEDHLHKHVNPGRESLLFPSVNDPNRHLAPSALYRMFYKARKAAGRPDLRVH 316 IPPHL+PAI DHL + V P +++LLFP+V+ HLAP++LYR FY+AR A R DLR H Sbjct 241 IPPHLLPAIRDHLDRFVEPDKDALLFPAVH--GGHLAPASLYRQFYRARSVAKRDDLRWH 298 Query 317 DLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAKGRDREIAALLSKL 369 DLRHSGAVLAA+TGATLAELM RLGHST AA+RYQHAA+GRDR+IA LLSKL Sbjct 299 DLRHSGAVLAAATGATLAELMARLGHSTPQAAMRYQHAAQGRDRQIARLLSKL 351 >gi|336118700|ref|YP_004573471.1| putative integrase [Microlunatus phosphovorus NM-1] gi|334686483|dbj|BAK36068.1| putative integrase [Microlunatus phosphovorus NM-1] Length=397 Score = 347 bits (889), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 185/365 (51%), Positives = 233/365 (64%), Gaps = 2/365 (0%) Query 6 KRQRRKFGRIRQFNSGRWQASYTGPDGRVYIAPKTFNAKIDAEAWLTDRRREIDRQLWSP 65 ++QR +GR+R+ SGR+QASY GPD V+ A TF DA WL R+ ID WSP Sbjct 30 RKQREGWGRVRKLPSGRFQASYQGPDIAVHNASTTFQTMTDARGWLVTERQLIDAGKWSP 89 Query 66 ASGQEDRPGA-PFGEYAEGWLKQRGIKDRTRAHYRKLLDNHILATFADTDLRDITPAAVR 124 + A YAE WL R +K RTR Y++LLD IL L+ ITP VR Sbjct 90 PKSRATLQRAETLAAYAEPWLANRTLKPRTRDLYQRLLDQKILPDLGPLPLKGITPLTVR 149 Query 125 RWYATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHKIRPATLDE 184 W+AT + PT RAH+Y+LLR I+ TA+ D LI SNPC I GA +R HKI+PA+ + Sbjct 150 TWHATLDLDHPTRRAHAYALLRTILGTAVTDGLISSNPCVIRGAGQTKREHKIQPASAAD 209 Query 185 LETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVARVRRAVVRVGEGFKVT 244 L+ I A+P+ Y VL+A+W AMR+GEL ELRR D+DL +VRR+ V V Sbjct 210 LDAIVAALPERYGCMVLLASWCAMRWGELVELRRSDLDLKNGKVKVRRSAQVVNGQVVVG 269 Query 245 TPKSDAGVRDISIPPHLIPAIEDHLHKHVNPGRESLLFPSVNDPNRHLAPSALYRMFYKA 304 PKSDAGVRDI+IPPHLIP I H+ + GRE L+FP+ + LA ++ + A Sbjct 270 PPKSDAGVRDIAIPPHLIPVIRAHVDRFAGWGREGLVFPAAQS-GQQLAHGTFFKTWDAA 328 Query 305 RKAAGRPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAKGRDREIAA 364 RKA+GRPDLR HDLRH+GAV+AA TGATLAELM RLGHST A+RYQH A+ RD+EIA Sbjct 329 RKASGRPDLRFHDLRHTGAVMAAQTGATLAELMGRLGHSTPAMAIRYQHVAQDRDQEIAR 388 Query 365 LLSKL 369 LS + Sbjct 389 RLSAM 393 >gi|41408866|ref|NP_961702.1| hypothetical protein MAP2768c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397225|gb|AAS05085.1| hypothetical protein MAP_2768c [Mycobacterium avium subsp. paratuberculosis K-10] Length=345 Score = 337 bits (865), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 175/306 (58%), Positives = 213/306 (70%), Gaps = 9/306 (2%) Query 6 KRQRRKFGRIRQFNSGRWQASYTGPDGRVYIAPKTFNAKIDAEAWLTDRRREIDRQLWSP 65 KR +R FG IR+ SGR+Q YTGPDG APKTF AKIDAEAWLTDRRREIDR LW Sbjct 8 KRDKRAFGNIRKLPSGRFQVRYTGPDGSYITAPKTFAAKIDAEAWLTDRRREIDRGLWDV 67 Query 66 ASGQEDRPGAPFGEYAEGWLKQRG-----IKDRTRAHYRKLLDNHILATFADTDLRDITP 120 AS ++ FG YA GWL R IK RTR HY+ +LD+H+L F L ITP Sbjct 68 ASAKQPE-RVTFGAYAAGWLAGRQVAGRPIKARTREHYQAILDDHLLPAFGSRQLTSITP 126 Query 121 AAVRRWYATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHKIRPA 180 VR WY+ T PTMR+H+YSLLR IM +A+ D+LID+NPCRI GA A+RVHKIRPA Sbjct 127 KDVREWYSGTLTNRPTMRSHAYSLLRTIMGSAVNDELIDANPCRIVGAGRAKRVHKIRPA 186 Query 181 TLDELETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVARVRRAVVRV-GE 239 T++EL +T+AMP+ + V +A+W A+R+GE EL+R DIDL EV R+RRA VR G Sbjct 187 TVEELPILTEAMPERLRLMVALASWCALRFGETIELQRGDIDLADEVIRIRRAAVRTHGG 246 Query 240 GFKVTTPKSDAGVRDISIPPHLIPAIEDHLHKHVNPGRESLLFPSVNDPNRHLAPSALYR 299 F+VTTPKSDAG+RD++IPPHL+ AIE HL K+V R+SLLFP N+ RHL PS L R Sbjct 247 TFEVTTPKSDAGIRDVAIPPHLVSAIEAHLAKYVGKKRDSLLFP--NERGRHLQPSTLNR 304 Query 300 MFYKAR 305 + R Sbjct 305 HWGTKR 310 >gi|336458855|gb|EGO37812.1| phage integrase family protein [Mycobacterium avium subsp. paratuberculosis S397] Length=349 Score = 337 bits (864), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 175/306 (58%), Positives = 213/306 (70%), Gaps = 9/306 (2%) Query 6 KRQRRKFGRIRQFNSGRWQASYTGPDGRVYIAPKTFNAKIDAEAWLTDRRREIDRQLWSP 65 KR +R FG IR+ SGR+Q YTGPDG APKTF AKIDAEAWLTDRRREIDR LW Sbjct 12 KRDKRAFGNIRKLPSGRFQVRYTGPDGSYITAPKTFAAKIDAEAWLTDRRREIDRGLWDV 71 Query 66 ASGQEDRPGAPFGEYAEGWLKQRG-----IKDRTRAHYRKLLDNHILATFADTDLRDITP 120 AS ++ FG YA GWL R IK RTR HY+ +LD+H+L F L ITP Sbjct 72 ASAKQPE-RVTFGAYAAGWLAGRQVAGRPIKARTREHYQAILDDHLLPAFGSRQLTSITP 130 Query 121 AAVRRWYATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHKIRPA 180 VR WY+ T PTMR+H+YSLLR IM +A+ D+LID+NPCRI GA A+RVHKIRPA Sbjct 131 KDVREWYSGTLTNRPTMRSHAYSLLRTIMGSAVNDELIDANPCRIVGAGRAKRVHKIRPA 190 Query 181 TLDELETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVARVRRAVVRV-GE 239 T++EL +T+AMP+ + V +A+W A+R+GE EL+R DIDL EV R+RRA VR G Sbjct 191 TVEELPILTEAMPERLRLMVALASWCALRFGETIELQRGDIDLADEVIRIRRAAVRTHGG 250 Query 240 GFKVTTPKSDAGVRDISIPPHLIPAIEDHLHKHVNPGRESLLFPSVNDPNRHLAPSALYR 299 F+VTTPKSDAG+RD++IPPHL+ AIE HL K+V R+SLLFP N+ RHL PS L R Sbjct 251 TFEVTTPKSDAGIRDVAIPPHLVSAIEAHLAKYVGKKRDSLLFP--NERGRHLQPSTLNR 308 Query 300 MFYKAR 305 + R Sbjct 309 HWGTKR 314 >gi|254821280|ref|ZP_05226281.1| phage integrase family protein [Mycobacterium intracellulare ATCC 13950] Length=378 Score = 319 bits (818), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 174/368 (48%), Positives = 231/368 (63%), Gaps = 6/368 (1%) Query 7 RQRRKFGRIRQFNSGRWQASYTGPDGRVYIAPKTFNAKIDAEAWLTDRRREIDRQLWSPA 66 R+RR FGRIR+ SGR+ A+Y GPD +++ AP+T+ A+ DAE WL + RR+ID W Sbjct 14 RKRRGFGRIRRERSGRYSAAYIGPDAKLHHAPRTYAAESDAEGWLANERRKIDLGTWGAV 73 Query 67 SGQEDRPGAPFGEYAEGWLKQRGIKDRTRAHYRKLLDNHILATFADTDLRDITPAAVRRW 126 E G YA+ W+ QR ++ RTR HY +L IL + +TPA VR W Sbjct 74 ---ERSDGITLRAYADKWIGQRQLRPRTRQHYESMLGRLILPDLGAAKIVTLTPAKVRVW 130 Query 127 YATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHKIRPATLDELE 186 +A PT AH+Y+LL AI TA+ D+++D+NPCRI A R + T +++ Sbjct 131 HAELGAEHPTRNAHAYALLHAICATAVQDEVLDANPCRIRAAMQTTRKRDVDVLTPADVD 190 Query 187 TITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVARVRRAVV-RVGEGFKVTT 245 + MP +A V++AAW +R+GE +ELRRKD+ RVRRAV R GE F V Sbjct 191 RLAGKMPPRLRASVILAAWCGLRWGETSELRRKDVSGDCATLRVRRAVTYRKGE-FIVGQ 249 Query 246 PKSDAGVRDISIPPHLIPAIEDHLHKHVNPGRESLLFPSVNDPNRHLAPSALYRMFYKAR 305 PK+ AGVRD+++PPH+ P I++HL HVN ESLLFP V+ H+ + KAR Sbjct 250 PKTAAGVRDVAVPPHIRPIIKEHLKNHVNRDLESLLFP-VDAEGSHMHGDNYRTHWEKAR 308 Query 306 KAAGRPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAKGRDREIAAL 365 + G+P+LRVHDLRH GAVLAA +GAT AELM RLGH+T ALRYQH A+GRD EIA Sbjct 309 ASIGKPNLRVHDLRHVGAVLAAQSGATTAELMHRLGHTTPQMALRYQHVAEGRDAEIAER 368 Query 366 LSKLAENQ 373 LSKLA+ + Sbjct 369 LSKLAKGK 376 >gi|326331572|ref|ZP_08197862.1| integrase [Nocardioidaceae bacterium Broad-1] gi|325950828|gb|EGD42878.1| integrase [Nocardioidaceae bacterium Broad-1] Length=417 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 178/397 (45%), Positives = 229/397 (58%), Gaps = 34/397 (8%) Query 9 RRKFGRIRQFNSGRWQASYTGPDGRVYIAPKTFNAKIDAEAWLTDRRREI--DRQLWSPA 66 +RKFG++ SGR QA YTGPDGR + AP TF A AWL RR + D W+P Sbjct 9 KRKFGQLYTLGSGRIQARYTGPDGRRHPAPMTFEDSDAATAWLLRERRLLEEDPTGWTPP 68 Query 67 ---SGQEDRPGAPFGEYAEGWLKQRGIKDR-----TRAHYRKLLDNHILATFADTDLRDI 118 + ++ FG +AE WL R +K R TR HY+ LLD IL TF +T ++ I Sbjct 69 KARAAKKKSQAVTFGAFAERWLLTRKVKGRPLAGRTRDHYQDLLDRFILPTFEETVVKHI 128 Query 119 TPAAVRRWYATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHKIR 178 TP V WY TA+ TPT RAH+Y LLR I++TA+ ++I +NP + GA + H + Sbjct 129 TPEMVDDWYDATALDTPTYRAHAYGLLRTILKTAVERNVIPANPAHVRGAGSVSAAHDVE 188 Query 179 PATLDELETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVARVRRAVVRV- 237 ATL+E+ TI MP + +L+ AW + RYGE+ ELRR+DIDL V RVRR VV V Sbjct 189 TATLNEVATIVAMMPAKQRLMILLGAWCSNRYGEIAELRRRDIDLKRMVIRVRREVVWVK 248 Query 238 -GEGFKVTT---PKSDAGVRDISIPPHLIPAIEDHLHKHVNPGRESLLFPSVNDPNRHLA 293 +G V T PK+DAG RD IPPHL+P I+DHL H G + LLFP N + Sbjct 249 DADGRYVATVKAPKTDAGSRDAPIPPHLVPDIKDHLKHHAADGLDGLLFP--NAQGGQIR 306 Query 294 PSALYRM-----------------FYKARKAAGRPDLRVHDLRHSGAVLAASTGATLAEL 336 S Y +Y AR AAGRPDL HDLRH+ AA GAT+AEL Sbjct 307 HSTFYGQAPVIDKKTKKIRRKGHGWYAARHAAGRPDLHFHDLRHTALTNAAIAGATIAEL 366 Query 337 MQRLGHSTAGAALRYQHAAKGRDREIAALLSKLAENQ 373 M GHST AA+RYQHAA+ R +++A LS++A + Sbjct 367 MALAGHSTPAAAMRYQHAARDRMQDLAKRLSEMAVGE 403 >gi|192824211|ref|YP_001994852.1| gp35 [Mycobacterium phage Pukovnik] gi|190610441|gb|ACE79961.1| gp35 [Mycobacterium phage Pukovnik] Length=377 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 150/371 (41%), Positives = 214/371 (58%), Gaps = 12/371 (3%) Query 9 RRKFGRIRQFNSGRWQASYTGP-DGRVYIAPKTFNAKIDAEAWLTDRRREIDRQLWSPAS 67 RR +G+IR SGR QASY DG+ + AP T++ ++DAEAWLT RR I+ ++W+P + Sbjct 9 RRGWGKIRTIGSGRIQASYVSSVDGQRHYAPTTYDNRMDAEAWLTSERRLIEMEVWTPPA 68 Query 68 GQEDRPGAP---FGEYAEGWLKQRGIKDRTRAHYRKLLDNHILATFADTDLRDITPAAVR 124 + + EYA+ WL++R + + TR Y+ I DT + ++ PA VR Sbjct 69 ERAKKKAVSAITVEEYAKKWLEERDLAEGTRELYKTHARKRIYPVLGDTAVSEMNPAIVR 128 Query 125 RWYATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHKIRPATLDE 184 W+A PT R H+Y++LRA+M TA+ D L+ NPCRI + A R + T +E Sbjct 129 AWWAGMGKDYPTARRHAYNVLRAVMNTAVEDKLLTENPCRIEQKTAAER--DVEALTPEE 186 Query 185 LETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVA--RVRRAVVRVGEGFK 242 L+ + + + Y+ V + AW ++R+GEL ELRRKDID GE RVRR RVGE Sbjct 187 LDIVAGEVFEHYRIAVYILAWTSLRFGELIELRRKDIDDDGETMLFRVRRGAARVGEKIV 246 Query 243 VTTPKSDAGVRDISIPPHLIPAIEDHLH--KHVNPGRESLLFPSVNDPNRHLAPSALYRM 300 V K+ R +++PPH+ + +H+ +N G E+LL + + L+ SA R Sbjct 247 VGNTKTVRSKRPVTVPPHVAEMVREHMKDRTKMNKGPEALLVTTTQ--KQRLSKSAFTRS 304 Query 301 FYKARKAAGRPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAKGRDR 360 K + GR DLRVHDLR GA AA GAT ELM RLGH+T A++YQ A++ RD Sbjct 305 LKKGYRKIGRTDLRVHDLRAVGATYAAQAGATTKELMVRLGHTTPRMAMKYQMASEARDV 364 Query 361 EIAALLSKLAE 371 EIA +S LA+ Sbjct 365 EIAKRMSDLAK 375 >gi|126436488|ref|YP_001072179.1| phage integrase family protein [Mycobacterium sp. JLS] gi|126236288|gb|ABN99688.1| phage integrase family protein [Mycobacterium sp. JLS] Length=387 Score = 258 bits (660), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 163/383 (43%), Positives = 213/383 (56%), Gaps = 28/383 (7%) Query 6 KRQRRKFGRIRQFNSGRWQASYTGPDGRVYIAPKTFNAKIDAEAWLT--------DRRRE 57 +R RR FGR+RQ SGRWQASY +G VY A TF K A WL DRRR Sbjct 11 ERTRRSFGRMRQLPSGRWQASYL-HNGAVYKALATFPTKSSAGHWLQAEEDLIDLDRRRP 69 Query 58 IDRQLWSPASGQEDRPGAP---FGEYAEGWLKQR-GIKDRTRAHYRKLLDNHILATFADT 113 + W+P + + R A YA+ WL + + RTR +YR LDNHIL D Sbjct 70 GE---WTPPAERAARRQAEKLTLRTYAKTWLDNKTKLARRTRDNYRGHLDNHILPVLGDL 126 Query 114 DLRDITPAAVRRWYATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARR 173 L +ITP VR W+A T A +Y++L + TA+ADDLI+ NPCRI GA+ + Sbjct 127 GLAEITPEHVRTWFAGLGTEHDTRNAQAYAILNGVFNTAVADDLIERNPCRIKGAAQVK- 185 Query 174 VHKIRPATL---DELETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVARV 230 H R L +L + AMPD + VL+A W A+R GE+ LRR DI G R+ Sbjct 186 -HAKRSVVLLDAAQLTELAAAMPDDARLAVLLAGWCALRKGEVFALRRCDIAADGSTVRI 244 Query 231 RRAVVRVGEGFKVTTPKSDAGVRDISIPPHLIPAIEDHLHKHVNPGRESLLF--PSVNDP 288 RAV F+V K+ R +S+PPH+ PA+ DHL +HV G E+L+F PS Sbjct 245 ERAVTYREGKFEVGPTKTRESRRVVSVPPHVRPAVVDHLARHVGEGDEALVFTEPSTGS- 303 Query 289 NRHLAPSALYRMFYK-ARKAAGRPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGA 347 A +R ++ AR+A G+P L HDLRH+G V+AA GATL E+M RLGH++ Sbjct 304 ---FAGEKRFRTAWEAAREAIGQPQLHFHDLRHAGGVMAAQAGATLREVMDRLGHTSPNM 360 Query 348 ALRYQHAAKGRDREIAALLSKLA 370 A+RYQH A+GR +A LS LA Sbjct 361 AMRYQHTAEGRAAALADKLSALA 383 >gi|296170210|ref|ZP_06851803.1| integrase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895086|gb|EFG74804.1| integrase [Mycobacterium parascrofulaceum ATCC BAA-614] Length=387 Score = 256 bits (654), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 162/384 (43%), Positives = 211/384 (55%), Gaps = 28/384 (7%) Query 5 GKRQRRKFGRIRQFNSGRWQASYTGPDGRVYIAPKTFNAKIDAEAWLT--------DRRR 56 G+R RR FGR+RQ SGRWQASY +G VY A TF K A WL DRRR Sbjct 10 GERTRRSFGRMRQLPSGRWQASYL-HNGAVYKALATFPTKSSAGHWLQAEEDLIDLDRRR 68 Query 57 EIDRQLWSPASGQEDRPGAP---FGEYAEGWLKQR-GIKDRTRAHYRKLLDNHILATFAD 112 + W+P + + R A YA WL + + RTR +YR LDNHIL D Sbjct 69 PGE---WTPPAERAARRQAEKLTLRTYANTWLDNKTKLARRTRDNYRGHLDNHILPALGD 125 Query 113 TDLRDITPAAVRRWYATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTAR 172 L +ITP VR W+A T A +Y++L + TA+ADDLID NPCRI GA+ + Sbjct 126 LGLAEITPEHVRTWFAGLGTEHDTRNAQAYAVLNGVFNTAVADDLIDRNPCRIKGAAQVK 185 Query 173 RVHKIRPATL---DELETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVAR 229 H R L +L + MPD + VL+A W +R GE+ LRR DI G R Sbjct 186 --HAKRSVVLLDAAQLTELAVKMPDDARLAVLLAGWCGLRKGEVFALRRCDIAADGSTVR 243 Query 230 VRRAVVRVGEGFKVTTPKSDAGVRDISIPPHLIPAIEDHLHKHVNPGRESLLF--PSVND 287 + RAV F+V K+ R +S+PPH+ PA+ DHL +H G E+L+F PS Sbjct 244 IERAVTYREGKFEVGPTKTRESRRVVSVPPHVRPAVLDHLARHTAEGDEALVFTEPSTGS 303 Query 288 PNRHLAPSALYRMFYK-ARKAAGRPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAG 346 A +R ++ AR+A G+P+L HDLRH+ V+AA TGATL ELM RLGH++ Sbjct 304 ----FAGEKRFRTAWEAAREAIGQPELHFHDLRHAAGVMAAQTGATLRELMDRLGHTSPN 359 Query 347 AALRYQHAAKGRDREIAALLSKLA 370 ++RYQH A+GR +A LS LA Sbjct 360 MSMRYQHTAEGRAAALADKLSALA 383 >gi|339752045|gb|AEJ92081.1| gp33 [Mycobacterium phage HelDan] Length=375 Score = 255 bits (652), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 147/371 (40%), Positives = 212/371 (58%), Gaps = 14/371 (3%) Query 9 RRKFGRIRQFNSGRWQASYTGP-DGRVYIAPKTFNAKIDAEAWLTDRRREIDRQLWSPAS 67 RR +G ++ SGR QASY P DG Y AP+T++ ++DAEAWL + RR I+ + W+P Sbjct 5 RRSWGSLKTQRSGRIQASYVHPQDGVRYYAPQTYDNRMDAEAWLNNERRLIEMETWTPPE 64 Query 68 GQEDRPGAP---FGEYAEGWLKQRGIKDRTRAHYRKLLDNHILATFADTDLRDITPAAVR 124 + + A EY WL++R + + TR Y+ I D + ++TPA VR Sbjct 65 ERIKKKAASSITVEEYTRKWLEERDLAEGTRELYKTHARKRIYPVLGDVPVSELTPALVR 124 Query 125 RWYATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRIS-GASTARRVHKIRPATLD 183 W+A PT R H+Y++LRA+M TA+ D ++ NPCRI A R V + P + Sbjct 125 TWWAGMGKQYPTARRHAYNVLRAVMNTAVEDKMLSENPCRIEQKAPNERDVEALTP---E 181 Query 184 ELETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDI--DLHGEVARVRRAVVRVGEGF 241 ELE + + + Y+ V + AW ++R+GEL ELRRKDI D + + RVRR RVG+ Sbjct 182 ELEIVAAEVHEHYRVAVYILAWTSLRFGELIELRRKDIMDDGNTMLFRVRRGAARVGQKI 241 Query 242 KVTTPKSDAGVRDISIPPHLIPAIEDHL--HKHVNPGRESLLFPSVNDPNRHLAPSALYR 299 V K+ R +++PPH+ + +H+ +N G E+LL + + L+ SA R Sbjct 242 VVGDTKTVRSKRPVTVPPHVAQMVREHMADRTKMNKGPEALLVTTTQ--GQRLSKSAFTR 299 Query 300 MFYKARKAAGRPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAKGRD 359 K + GR DLRVHDLR GA AA +GAT ELM RLGH+T A++YQ A++ RD Sbjct 300 SLKKGYRKIGRTDLRVHDLRAVGATYAAQSGATTKELMVRLGHTTPRMAMKYQMASEARD 359 Query 360 REIAALLSKLA 370 EIA +S+LA Sbjct 360 VEIAKRMSELA 370 >gi|309810567|ref|ZP_07704384.1| site-specific recombinase, phage integrase family [Dermacoccus sp. Ellin185] gi|308435481|gb|EFP59296.1| site-specific recombinase, phage integrase family [Dermacoccus sp. Ellin185] Length=422 Score = 252 bits (644), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 154/364 (43%), Positives = 207/364 (57%), Gaps = 16/364 (4%) Query 9 RRKFGRIRQFNSGRWQASYTGPDGRVYIAPKTFNAKIDAEAWLTDRRREIDRQLWSPASG 68 RR FG +R+ SGR+QASY G D + + AP TF K DAE WL RR DR W+P S Sbjct 8 RRGFGAVRKLPSGRFQASYIGRDLQRHNAPTTFETKGDAEGWLAGERRLRDRDDWTPPSV 67 Query 69 QEDRPGAPFGEYAEGW--------LKQRGIKDRTRAHYRKLLDNHILATFADTDLRDITP 120 + +RP AE W + ++ TRA Y +L +++ T D L+ IT Sbjct 68 RANRPRKGDPTLAEWWPEFIERRRVDGEPLRPTTRAWYDQLYRHYLKPTLGDVPLKGITA 127 Query 121 AAVRRWY--ATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHKIR 178 A V+ W+ T G+ ++R ++Y LRA M AL + LI +NPC I +R ++ Sbjct 128 ARVKAWWDDFPTDRGS-SVRPNAYMALRAAMSQALEEGLIITNPCTIKVQRKKKRELEV- 185 Query 179 PATLDELETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVARVRRAVVRVG 238 AT +++ TI MP+ + V +AAW +R+GE+ ELRR DIDL RV RAV RV Sbjct 186 -ATREQVATIHSHMPEAFAPIVTIAAWCGLRFGEIIELRRGDIDLARRTIRVERAVSRVH 244 Query 239 EGFKVTTPKSDAGVRDISIPPHLIPAIEDHLHKHVNPGRESLLFPSVNDPNRHLAPSALY 298 F V PKSDAG+R +S+P + +E HL +HV P ++L+F HL Sbjct 245 GKFIVGPPKSDAGIRTVSMPTAVADELEQHLERHVRPEPDALVFEYC---GHHLQQPQFS 301 Query 299 RMFYKARKAAGRPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAKGR 358 + AR AGRPDLR+HDLRH+ AV A GATLA+LM RLGHS+ AL YQHAA R Sbjct 302 IWWRYARGMAGRPDLRLHDLRHTSAVWYAQQGATLADLMARLGHSSPTMALHYQHAAAER 361 Query 359 DREI 362 DR++ Sbjct 362 DRDL 365 >gi|339781870|gb|AEK07698.1| gp36 [Mycobacterium phage Vix] Length=381 Score = 252 bits (643), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 148/371 (40%), Positives = 207/371 (56%), Gaps = 14/371 (3%) Query 9 RRKFGRIRQFNSGRWQASYTGP-DGRVYIAPKTFNAKIDAEAWLTDRRREIDRQLWSPAS 67 RR +G ++ SGR QASY P DG Y A +T++ ++DAEAWL RR I+ + W+P + Sbjct 5 RRSWGSLKTMRSGRIQASYVHPLDGVRYYALQTYDNRMDAEAWLNSERRLIEMETWTPPA 64 Query 68 GQEDRPGAP---FGEYAEGWLKQRGIKDRTRAHYRKLLDNHILATFADTDLRDITPAAVR 124 + + A EY + WL +R + + TR Y+ I DT + ++TPA VR Sbjct 65 ERAKKKAASSITVEEYTKKWLTERDLAEGTRELYKTHARKRIYPVLGDTAVAEMTPALVR 124 Query 125 RWYATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRIS-GASTARRVHKIRPATLD 183 W+A PT R H+Y++LRA+M TA+ D L+ NPCRI A R V + P Sbjct 125 AWWAGMGHQHPTARRHAYNILRAVMNTAVEDKLLSENPCRIEQKAPNERDVEALTP---Q 181 Query 184 ELETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVA--RVRRAVVRVGEGF 241 ELET+ + + Y+ V + AW ++R+GEL E+RRKDI G RVRR RVG+ Sbjct 182 ELETVAAEVHEHYRVAVYLLAWTSLRFGELIEIRRKDIMDDGVTMKFRVRRGAARVGQKI 241 Query 242 KVTTPKSDAGVRDISIPPHLIPAIEDHLH--KHVNPGRESLLFPSVNDPNRHLAPSALYR 299 V K+ R +++PPH+ + +H+ K ++ G E+LL + L+ SA R Sbjct 242 VVGNTKTVRSKRPVTVPPHVAAMVREHMKDRKKMHKGPEALLLTTTQ--GERLSKSAFTR 299 Query 300 MFYKARKAAGRPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAKGRD 359 K GR DLRVHDLR GA AA GAT ELM RLGH+T A++YQ A++ RD Sbjct 300 SLKKGYAKIGRTDLRVHDLRAVGATYAAQAGATTKELMVRLGHTTPRMAMKYQMASEARD 359 Query 360 REIAALLSKLA 370 IA +SKLA Sbjct 360 EAIAEAMSKLA 370 >gi|120405318|ref|YP_955147.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|119958136|gb|ABM15141.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] Length=373 Score = 251 bits (642), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 153/374 (41%), Positives = 204/374 (55%), Gaps = 9/374 (2%) Query 5 GKRQRRKFGRIRQFNSGRWQASYTGPDGRVYIAPKTFNAKIDAEAWLTDRRREIDRQLWS 64 GK+ R +G IRQ S R+QASY GPD + A TF A+IDAE WL+ RR I+ W+ Sbjct 3 GKKGHRGWGWIRQLPSKRYQASYIGPDLIRHKASTTFGARIDAEGWLSQERRSIELDTWT 62 Query 65 PAS---GQEDRPGAPFGEYAEGWLKQRGIKDRTRAHYRKLLDNHILATFADTDLRDITPA 121 P + + GEY+ W++ R +K RTR+ YR +L HI ++++T Sbjct 63 PPAQRAAEVKAKAVTLGEYSTKWIEDRNVKPRTRSSYRDILRLHIEPRLGSMAMKNLTGE 122 Query 122 AVRRWYATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGA-STARRVHKIRPA 180 VR WYA P +H+Y LL A+ TA++D L+ SNPC I A + RR + A Sbjct 123 VVRSWYAGLGTDYPRRNSHAYGLLHAVCATAVSDGLLQSNPCNIRRAMNPPRRRDPVILA 182 Query 181 TLDELETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVARVRRAVVRVGEG 240 D P + VL+AAW +R+GE++ELRRKD+ EV V RAV R Sbjct 183 VADIAALAEAIQPRRLRCLVLLAAWCGVRWGEVSELRRKDLSDGCEVLSVSRAVTRRDGV 242 Query 241 FKVTTPKSDAGVRDISIPPHLIPAIEDHLHKHVNPGRESLLFPSVNDPNRHLAPSALYRM 300 ++V TPKS G R + IPPH+ + +HL ++V G ESLLFP+ H+ R Sbjct 243 YRVDTPKSGKG-RAVVIPPHIREDVINHLAENVESGPESLLFPAAR--GGHMNDRVFSRE 299 Query 301 FYK-ARKAAGRPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAKGRD 359 ++ A KA GR +RVHDLRH A A LAE M RLGHST A+L YQ GRD Sbjct 300 YFSDALKAIGRQGVRVHDLRHFAGTQTAQV-ANLAESMARLGHSTVKASLIYQGLVTGRD 358 Query 360 REIAALLSKLAENQ 373 IA LS+LA + Sbjct 359 AAIADALSQLAVGE 372 >gi|342221236|gb|AEL17831.1| gp34 [Mycobacterium phage Turbido] Length=377 Score = 249 bits (636), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 152/373 (41%), Positives = 210/373 (57%), Gaps = 20/373 (5%) Query 9 RRKFGRIRQFNSGRWQASYTGPDGRVYIAPKTFNAKIDAEAWLTDRRREIDRQLWSPASG 68 RR +G++R SGR ASY DG Y AP T++ ++DAEAWL R I+ + W+P + Sbjct 10 RRGWGKLRVIGSGRIHASYMH-DGVRYNAPTTYDNRMDAEAWLAREHRLIEMEQWTPPAE 68 Query 69 QEDRPGAP---FGEYAEGWLKQR----GIKDRTRAHYRKLLDNHILATFADTDLRDITPA 121 + + A EY + W+ +R G KD H RK I DT + ++TPA Sbjct 69 RLAKKAASAITVEEYTKKWIAERDLAGGTKDLYTTHARK----RIYPVLGDTPVVEMTPA 124 Query 122 AVRRWYATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHKIRPAT 181 VR W+A PT R H+Y++LRA+M TA+ D L+ NPCRI + A R + T Sbjct 125 LVRAWWAGMGKEYPTARRHAYNVLRAVMNTAVEDKLLSENPCRIEQKAVAER--DVEALT 182 Query 182 LDELETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVA--RVRRAVVRVGE 239 EL+ + + + Y+ V + AW ++R+GEL ELRRKDID GE RVRR RVGE Sbjct 183 PQELDIVASEVFEHYRVAVYILAWTSLRFGELIELRRKDIDDDGETMKLRVRRGAARVGE 242 Query 240 GFKVTTPKSDAGVRDISIPPHLIPAIEDHLH--KHVNPGRESLLFPSVNDPNRHLAPSAL 297 V K+ R +++PPH+ I +H+ +N G E+LL + NR L+ SA Sbjct 243 KIVVGNTKTVRSKRPVTVPPHVAQMIREHMKDRTKMNKGPEALLVTTTQG-NR-LSKSAF 300 Query 298 YRMFYKARKAAGRPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAKG 357 R + GR DLR+HDLR GA LAA +GAT ELM RLGH+T A++YQ A++ Sbjct 301 TRSLKRGYAKLGRTDLRIHDLRAVGATLAAQSGATTKELMVRLGHTTPRMAMKYQMASEA 360 Query 358 RDREIAALLSKLA 370 RD EIA +S+LA Sbjct 361 RDEEIARKMSELA 373 >gi|339755123|gb|AEJ95133.1| gp36 [Mycobacterium phage JHC117] Length=381 Score = 249 bits (635), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 147/371 (40%), Positives = 206/371 (56%), Gaps = 14/371 (3%) Query 9 RRKFGRIRQFNSGRWQASYTGP-DGRVYIAPKTFNAKIDAEAWLTDRRREIDRQLWSPAS 67 RR +G ++ SGR QASY P DG Y A +T++ ++DAEAWL RR I+ + W+P + Sbjct 5 RRSWGSLKTMRSGRIQASYVHPLDGVRYYALQTYDNRMDAEAWLNSERRLIEMETWTPPA 64 Query 68 GQEDRPGAP---FGEYAEGWLKQRGIKDRTRAHYRKLLDNHILATFADTDLRDITPAAVR 124 + + A E + WL +R + + TR Y+ I DT + ++TPA VR Sbjct 65 ERAKKKAASSITVEECTKKWLTERDLAEGTRELYKTHARKRIYPVLGDTAVAEMTPALVR 124 Query 125 RWYATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRIS-GASTARRVHKIRPATLD 183 W+A PT R H+Y++LRA+M TA+ D L+ NPCRI A R V + P Sbjct 125 AWWAGMGHQHPTARRHAYNILRAVMNTAVEDKLLSENPCRIEQKAPNERDVEALTP---Q 181 Query 184 ELETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVA--RVRRAVVRVGEGF 241 ELET+ + + Y+ V + AW ++R+GEL E+RRKDI G RVRR RVG+ Sbjct 182 ELETVAAEVHEHYRVAVYLLAWTSLRFGELIEIRRKDIMDDGVTMKFRVRRGAARVGQKI 241 Query 242 KVTTPKSDAGVRDISIPPHLIPAIEDHLH--KHVNPGRESLLFPSVNDPNRHLAPSALYR 299 V K+ R +++PPH+ + +H+ K ++ G E+LL + L+ SA R Sbjct 242 VVGNTKTVRSKRPVTVPPHVAAMVREHMKDRKKMHKGPEALLLTTTQ--GERLSKSAFTR 299 Query 300 MFYKARKAAGRPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAKGRD 359 K GR DLRVHDLR GA AA GAT ELM RLGH+T A++YQ A++ RD Sbjct 300 SLKKGYAKIGRTDLRVHDLRAVGATYAAQAGATTKELMVRLGHTTPRMAMKYQMASEARD 359 Query 360 REIAALLSKLA 370 IA +SKLA Sbjct 360 EAIAEAMSKLA 370 >gi|9630419|ref|NP_046850.1| gp33 [Mycobacterium phage D29] gi|300669623|sp|Q38361.2|VINT_BPMD2 RecName: Full=Integrase gi|3172283|gb|AAC18476.1| integrase [Mycobacterium phage D29] Length=356 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 145/359 (41%), Positives = 202/359 (57%), Gaps = 20/359 (5%) Query 24 QASYTGP-DGRVYIAPKTFNAKIDAEAWLTDRRREIDRQLWSPASGQEDRPGAP---FGE 79 QASY P DG+ Y P+ ++ ++DAEAWL +R ID + W+P + +E + A E Sbjct 2 QASYVSPIDGQRYFGPRNYDNRMDAEAWLASEKRLIDNEEWTPPAEREKKAAASAITVEE 61 Query 80 YAEGWLKQR----GIKDRTRAHYRKLLDNHILATFADTDLRDITPAAVRRWYATTAVGTP 135 Y + W+ +R G KD H RK I DT + ++TPA VR W+A P Sbjct 62 YTKKWIAERDLAGGTKDLYSTHARK----RIYPVLGDTPVAEMTPALVRAWWAGMGKQYP 117 Query 136 TMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHKIRPATLDELETITKAMPDP 195 T R H+Y++LRA+M TA+ D L+ NPCRI + A R + T +EL+ + + + Sbjct 118 TARRHAYNVLRAVMNTAVEDKLVSENPCRIEQKAPAER--DVEALTPEELDVVAGEVFEH 175 Query 196 YQAFVLMAAWLAMRYGELTELRRKDIDLHGEVA--RVRRAVVRVGEGFKVTTPKSDAGVR 253 Y+ V + AW ++R+GEL E+RRKDI GE RVRR RVGE V K+ R Sbjct 176 YRVAVYILAWTSLRFGELIEIRRKDIVDDGETMKLRVRRGAARVGEKIVVGNTKTVRSKR 235 Query 254 DISIPPHLIPAIEDHL--HKHVNPGRESLLFPSVNDPNRHLAPSALYRMFYKARKAAGRP 311 +++PPH+ I +H+ +N G E+LL + + L+ SA R K GRP Sbjct 236 PVTVPPHVAAMIREHMADRTKMNKGPEALLVTTTR--GQRLSKSAFTRSLKKGYAKIGRP 293 Query 312 DLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAKGRDREIAALLSKLA 370 DLR+HDLR GA LAA GAT ELM RLGH+T A++YQ A+ RD EIA +S+LA Sbjct 294 DLRIHDLRAVGATLAAQAGATTKELMVRLGHTTPRMAMKYQMASAARDEEIARRMSELA 352 >gi|342221329|gb|AEL17923.1| gp35 [Mycobacterium phage Trixie] Length=354 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 141/355 (40%), Positives = 201/355 (57%), Gaps = 12/355 (3%) Query 24 QASYTGP-DGRVYIAPKTFNAKIDAEAWLTDRRREIDRQLWSPASGQEDRPGA---PFGE 79 QASY P DG+ Y P+ ++ ++DAEAWL +R ID + W+P + + + A E Sbjct 2 QASYISPVDGQRYWGPRNYDNRMDAEAWLASEKRLIDMEQWTPPAERAKKEAANSITVEE 61 Query 80 YAEGWLKQRGIKDRTRAHYRKLLDNHILATFADTDLRDITPAAVRRWYATTAVGTPTMRA 139 Y + WL +R + + TR Y+ I D + ++TPA VR W+A PT R Sbjct 62 YTKKWLAERDLAEGTRELYKTHARKRIYPVLGDVAVAEMTPALVRAWWAGMGKDYPTARR 121 Query 140 HSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHKIRPATLDELETITKAMPDPYQAF 199 H+Y++LRA+M TA+ D L+ NPCRI + A R + T +EL+ + + + Y+ Sbjct 122 HAYNVLRAVMNTAVEDKLLTENPCRIEQKAAAER--DVEALTPEELDIVAGEVLEHYRVA 179 Query 200 VLMAAWLAMRYGELTELRRKDIDLHGEVA--RVRRAVVRVGEGFKVTTPKSDAGVRDISI 257 V + AW ++R+GEL ELRRKDID GE RVRR RVG+ V K+ R +++ Sbjct 180 VYILAWTSLRFGELIELRRKDIDDDGETMMFRVRRGAARVGQKVVVGNTKTVRSKRPVTV 239 Query 258 PPHLIPAIEDHL--HKHVNPGRESLLFPSVNDPNRHLAPSALYRMFYKARKAAGRPDLRV 315 PPH+ I +H+ +N G E+LL + + L+ SA R K + GR DLRV Sbjct 240 PPHVATMIREHMADRTKMNKGPEALLVTTTQ--GQRLSKSAFTRALKKGYRKIGRTDLRV 297 Query 316 HDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAKGRDREIAALLSKLA 370 HDLR GA AA GAT ELM RLGH+T A++YQ A++ RD EIA +S+LA Sbjct 298 HDLRAVGATYAAQAGATTKELMVRLGHTTPRMAMKYQMASEARDAEIAKRMSELA 352 >gi|302858546|gb|ADL71292.1| gp32 [Mycobacterium phage Eagle] Length=373 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 143/370 (39%), Positives = 203/370 (55%), Gaps = 12/370 (3%) Query 9 RRKFGRIRQFNSGRWQASYTGP-DGRVYIAPKTFNAKIDAEAWLTDRRREIDRQLWSPAS 67 RR +G++R SGR ASY P D + Y AP T++ ++DAEAWL +R I+ W+P S Sbjct 5 RRSWGKLRTIGSGRIHASYVCPLDDKRYNAPTTYDNRMDAEAWLAKEKRLIENGEWTPPS 64 Query 68 GQEDR---PGAPFGEYAEGWLKQRGIKDRTRAHYRKLLDNHILATFADTDLRDITPAAVR 124 + + EY WL +R + T+ Y I +T + ++TPA VR Sbjct 65 ERLRKAKVSAITVEEYTRKWLSERDLAPGTKNLYETHAAKRIYPALGETPVAEMTPAVVR 124 Query 125 RWYATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHKIRPATLDE 184 W+A PT R H+Y++LRA+M TA+ D L+ NPCRI + A R + +++E Sbjct 125 AWWAGMGKQYPTARRHAYNVLRAVMNTAVEDKLLSENPCRIEQKAAAER--DVEALSVEE 182 Query 185 LETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVA--RVRRAVVRVGEGFK 242 LE + + + Y+ V + AW ++R+GEL ELRRKDI GE RVRR RVG+ Sbjct 183 LEKVAAEVHEHYRIAVYILAWTSLRFGELIELRRKDIMDDGETMHFRVRRGAARVGQKIV 242 Query 243 VTTPKSDAGVRDISIPPHLIPAIEDHLH--KHVNPGRESLLFPSVNDPNRHLAPSALYRM 300 V K+ R +++PPH+ + +H+ +N G E+LL + + L +A R Sbjct 243 VGETKTVRSKRPVTVPPHVAEMVREHMKDRTKMNKGPEALLVTTTQ--KQRLTKAAFTRS 300 Query 301 FYKARKAAGRPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAKGRDR 360 K GR DLRVHDLR GA AA GAT ELM RLGH+T A++YQ A++ RD Sbjct 301 LKKGYAKIGRTDLRVHDLRAVGATYAAQAGATTKELMVRLGHTTPRMAMKYQMASEARDI 360 Query 361 EIAALLSKLA 370 EIA +S LA Sbjct 361 EIAKRMSALA 370 >gi|339755418|gb|AEJ95425.1| gp36 [Mycobacterium phage Microwolf] Length=368 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 145/362 (41%), Positives = 201/362 (56%), Gaps = 14/362 (3%) Query 18 FNSGRWQASYTGP-DGRVYIAPKTFNAKIDAEAWLTDRRREIDRQLWSPASGQEDRPGAP 76 SGR QASY P DG Y A +T++ ++DAEAWL RR I+ + W+P + + + A Sbjct 1 MRSGRIQASYVHPLDGLRYYALQTYDNRMDAEAWLNSERRLIEMETWTPPAERAKKKAAS 60 Query 77 ---FGEYAEGWLKQRGIKDRTRAHYRKLLDNHILATFADTDLRDITPAAVRRWYATTAVG 133 EY + WL +R + + TR Y+ I DT + ++TPA VR W+A Sbjct 61 SITVEEYTKKWLTERDLAEGTRELYKTHARKRIYPVLGDTAVAEMTPALVRAWWAGMGHQ 120 Query 134 TPTMRAHSYSLLRAIMQTALADDLIDSNPCRIS-GASTARRVHKIRPATLDELETITKAM 192 PT R H+Y++LRA+M TA+ D L+ NPCRI A R V + P ELET+ + Sbjct 121 HPTARRHAYNILRAVMNTAVEDKLLSENPCRIEQKAPNERDVEALTP---QELETVAAEV 177 Query 193 PDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVA--RVRRAVVRVGEGFKVTTPKSDA 250 + Y+ V + AW ++R+GEL E+RRKDI G RVRR RVG+ V K+ Sbjct 178 HEHYRVAVYLLAWTSLRFGELIEIRRKDIMDDGVTMKFRVRRGAARVGQKIVVGNTKTVR 237 Query 251 GVRDISIPPHLIPAIEDHLH--KHVNPGRESLLFPSVNDPNRHLAPSALYRMFYKARKAA 308 R +++PPH+ + +H+ K ++ G E+LL + L+ SA R K Sbjct 238 SKRPVTVPPHVAAMVREHMKDRKKMHKGPEALLLTTTQ--GERLSKSAFTRSLKKGYAKI 295 Query 309 GRPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAKGRDREIAALLSK 368 GR DLRVHDLR GA AA GAT ELM RLGH+T A++YQ A++ RD IA +SK Sbjct 296 GRTDLRVHDLRAVGATYAAQAGATTKELMVRLGHTTPRMAMKYQMASEARDEAIAEAMSK 355 Query 369 LA 370 LA Sbjct 356 LA 357 >gi|109392486|ref|YP_655615.1| gp36 [Mycobacterium phage Che12] gi|91980636|gb|ABE67355.1| gp36 [Mycobacterium phage Che12] Length=371 Score = 243 bits (621), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 146/373 (40%), Positives = 206/373 (56%), Gaps = 14/373 (3%) Query 9 RRKFGRIRQFNSGRWQASYTGP-DGRVYIAPKTFNAKIDAEAWLTDRRREIDRQLWSPAS 67 RR +G ++ SGR QASY P DG Y A +T++ K+DAEAWL +R I+ + W+P Sbjct 3 RRGWGSLKTQRSGRIQASYVNPQDGVRYYALQTYDNKMDAEAWLAGEKRLIEMETWTPPQ 62 Query 68 GQEDRPGAP---FGEYAEGWLKQRGIKDRTRAHYRKLLDNHILATFADTDLRDITPAAVR 124 + + A EY WL +R + + TR Y + I D + ++TPA VR Sbjct 63 DRAKKAAASAVTLEEYTRKWLVERDLAESTRELYSGHAERRIYPVLGDVAVPELTPALVR 122 Query 125 RWYATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRIS-GASTARRVHKIRPATLD 183 W+A PT R H+Y++LRA+M TA+ D LI NPCRI A R V + P + Sbjct 123 AWWAGMGRNHPTARRHAYNVLRAVMNTAVEDKLIAENPCRIEQKAPDERDVEALTP---E 179 Query 184 ELETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVA--RVRRAVVRVGEGF 241 EL+ + + + Y+ + AW ++R+GEL ELRRKDI G+ RVRR RVG Sbjct 180 ELDIVAAEIFEHYRIAAYILAWTSLRFGELIELRRKDIVDDGKTMKLRVRRGGTRVGNKI 239 Query 242 KVTTPKSDAGVRDISIPPHLIPAIEDHLH--KHVNPGRESLLFPSVNDPNRHLAPSALYR 299 V K+ R +++PPH+ I +H+ +N G E+ L + NR L+ SA + Sbjct 240 VVGNAKTVRSKRPVTVPPHVATMIREHMKDRTKMNKGPEAFLVTTTQG-NR-LSKSAFTK 297 Query 300 MFYKARKAAGRPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAKGRD 359 + GRP+LR+HDLR GA AA GAT ELM RLGH+T A++YQ A++ RD Sbjct 298 SLKRGYAKIGRPELRIHDLRAVGATFAAQAGATTKELMARLGHTTPRMAMKYQMASEARD 357 Query 360 REIAALLSKLAEN 372 IAA +SKLA+ Sbjct 358 EAIAAAMSKLAKT 370 >gi|226307996|ref|YP_002767956.1| integrase [Rhodococcus erythropolis PR4] gi|226187113|dbj|BAH35217.1| putative integrase [Rhodococcus erythropolis PR4] Length=374 Score = 242 bits (617), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 149/366 (41%), Positives = 201/366 (55%), Gaps = 9/366 (2%) Query 2 TQTGKRQRRKFGRIRQFNSGRWQASYTGPDGRVYIAPKTFNAKIDAEAWLTDRRREIDRQ 61 T K+ R +GR+R S R+QA+Y GPDG V+ A TF AK+DAE WL RR I++ Sbjct 6 TMPAKKGMRGWGRVRLLPSKRYQAAYVGPDGLVHKAHATFTAKLDAEGWLAAERRRIEQG 65 Query 62 LWSPASGQEDRPGAPFGEYAEGWLKQRG--IKDRTRAHYRKLLDNHILATFADTDLRDIT 119 WSP GQ FG YAE W + K RTR R LD IL TFA+ +L + Sbjct 66 TWSP-PGQRAVAALTFGHYAERWFTETTGRHKPRTRDLNRGYLDRVILPTFANLELEGLN 124 Query 120 PAAVRRWYATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHKIRP 179 VR W+A+ PT A++YSLLR I+ AL D+LI NPCRI A+ RV + Sbjct 125 VQMVRTWFASLD-ARPTRNANAYSLLRTILNQALDDELIQVNPCRIKRAAVKVRVVEPIA 183 Query 180 ATLDELETITKAMP-DPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVARVR--RAVVR 236 + E+ ++ AM + ++A VL+A + +R+GEL LRR D+ L V RAVVR Sbjct 184 LSAGEVRALSAAMSIERWRALVLVAGFSGLRWGELAALRRSDVVLTDSECSVTVARAVVR 243 Query 237 VGEGFKVTTPKSDAGVRDISIPPHLIPAIEDHLHKHVNPGRESLLFPSVNDPNRHLAPSA 296 F + PKS A +R + +P L A+EDHL + PGR L+FPSV H + Sbjct 244 RTGEFVIGRPKSHAALRTVPLPSALREALEDHLELYALPGRNGLVFPSVGGTVAH--ENV 301 Query 297 LYRMFYKARKAAGRPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAK 356 + KA G R HDLRH+ A + A GATLA+ M +GH++A + RY H+ Sbjct 302 VRPHLKKAAAKIGHQSFRFHDLRHTAATMFAQAGATLADHMTLMGHTSAAMSARYTHSTA 361 Query 357 GRDREI 362 R+RE+ Sbjct 362 SRNREL 367 >gi|9625463|ref|NP_039697.1| observed 41.8Kd protein [Mycobacterium phage L5] gi|465416|sp|P22884.2|VINT_BPML5 RecName: Full=Integrase gi|579129|emb|CAA79409.1| gene 33 [Mycobacterium phage L5] Length=371 Score = 239 bits (610), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 145/373 (39%), Positives = 204/373 (55%), Gaps = 14/373 (3%) Query 9 RRKFGRIRQFNSGRWQASYTGP-DGRVYIAPKTFNAKIDAEAWLTDRRREIDRQLWSPAS 67 RR +G ++ SGR QASY P DG Y A +T++ K+DAEAWL +R I+ + W+P Sbjct 3 RRGWGSLKTQRSGRIQASYVNPQDGVRYYALQTYDNKMDAEAWLAGEKRLIEMETWTPPQ 62 Query 68 GQEDRPGAP---FGEYAEGWLKQRGIKDRTRAHYRKLLDNHILATFADTDLRDITPAAVR 124 + + A EY WL +R + D TR Y + I + + ++TPA VR Sbjct 63 DRAKKAAASAITLEEYTRKWLVERDLADGTRDLYSGHAERRIYPVLGEVAVTEMTPALVR 122 Query 125 RWYATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRIS-GASTARRVHKIRPATLD 183 W+A PT R H+Y++LRA+M TA+ D LI NPCRI A+ R V + P + Sbjct 123 AWWAGMGRKHPTARRHAYNVLRAVMNTAVEDKLIAENPCRIEQKAADERDVEALTP---E 179 Query 184 ELETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVA--RVRRAVVRVGEGF 241 EL+ + + + Y+ + AW ++R+GEL ELRRKDI G RVRR RVG Sbjct 180 ELDIVAAEIFEHYRIAAYILAWTSLRFGELIELRRKDIVDDGMTMKLRVRRGASRVGNKI 239 Query 242 KVTTPKSDAGVRDISIPPHLIPAIEDHLH--KHVNPGRESLLFPSVNDPNRHLAPSALYR 299 V K+ R +++PPH+ I H+ +N G E+ L + NR L+ SA + Sbjct 240 VVGNAKTVRSKRPVTVPPHVAEMIRAHMKDRTKMNKGPEAFLVTTTQG-NR-LSKSAFTK 297 Query 300 MFYKARKAAGRPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAKGRD 359 + GRP+LR+HDLR GA AA GAT ELM RLGH+T A++YQ A++ RD Sbjct 298 SLKRGYAKIGRPELRIHDLRAVGATFAAQAGATTKELMARLGHTTPRMAMKYQMASEARD 357 Query 360 REIAALLSKLAEN 372 IA +SKLA+ Sbjct 358 EAIAEAMSKLAKT 370 >gi|291439062|ref|ZP_06578452.1| integrase [Streptomyces ghanaensis ATCC 14672] gi|166078058|gb|ABY81078.1| Int1 [Streptomyces ghanaensis] gi|291341957|gb|EFE68913.1| integrase [Streptomyces ghanaensis ATCC 14672] Length=376 Score = 239 bits (609), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 154/369 (42%), Positives = 202/369 (55%), Gaps = 16/369 (4%) Query 8 QRRKFGRIRQFNSGRWQASYTGPD-GRVYIAPKTFNAKIDAEAWLTDRRREIDRQLWSPA 66 +RR FG +RQ SGRWQ Y P+ G++ A KT+ K DA+ LT +I R WS Sbjct 7 KRRNFGSVRQLPSGRWQVRYRDPETGQLRPAEKTYATKTDAQVALTHIESDIVRGQWS-- 64 Query 67 SGQEDRPGAPFGEYAEGWLKQRGIKDRTRAHYRKLLDNHILATFADTDLRDITPAAVRRW 126 D FGEYA WL+ R + DRTR ++ HIL TF + D+T A VR W Sbjct 65 --DPDAGAVNFGEYATAWLRDRKLADRTRERNESVMRLHILPTFGAGSVADVTTARVRGW 122 Query 127 YA---TTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHKIRPA-TL 182 VG PT+ +Y LLRA+M TA+ D+LI NPCRI GA R RP T+ Sbjct 123 RGKLLAAGVGEPTV-VKAYQLLRALMNTAVDDELIRRNPCRIKGAD--RYDVPERPVLTV 179 Query 183 DELETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVARVRRAVVRVGEG-F 241 E+ + ++ Y+ VL+AA+ +R+GEL LRR+DID G VRRA + +G Sbjct 180 AEVFAVADSIAPRYRLLVLLAAFTTLRFGELAALRRRDIDQEGLTVTVRRAQAELQDGRL 239 Query 242 KVTTPKSDAGVRDISIPPHLIPAIEDHLHKHVNPGRESLLFPSVNDPNRHLAPSALYRMF 301 PKS AGVR +S P L+ A+ HL PGR+ +F V L S + Sbjct 240 FDKAPKSAAGVRSVSFPAELLDAVAHHLEHFAAPGRDGHVF--VGPQGGQLRRSNFRDDW 297 Query 302 YKARKAAG-RPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAKGRDR 360 KAR+AAG +L HDLRH+G LA++ GA+ ELM R+GHS++ AAL YQH RDR Sbjct 298 VKAREAAGVTAELHFHDLRHTGNTLASTAGASTRELMTRMGHSSSRAALIYQHMTSDRDR 357 Query 361 EIAALLSKL 369 IA L + Sbjct 358 TIADRLGAM 366 >gi|339781570|gb|AEK07401.1| gp33 [Mycobacterium phage Rockstar] Length=374 Score = 238 bits (608), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 140/372 (38%), Positives = 204/372 (55%), Gaps = 12/372 (3%) Query 9 RRKFGRIRQFNSGRWQASYTGP-DGRVYIAPKTFNAKIDAEAWLTDRRREIDRQLWSPAS 67 RR +G ++ SGR QASY P DG Y A T++ ++DAEAWL +R I+ + W+P Sbjct 5 RRSWGSLKTMRSGRIQASYVHPLDGVRYYALHTYDNRMDAEAWLAQEKRLIEMETWTPPE 64 Query 68 GQEDRPGAP---FGEYAEGWLKQRGIKDRTRAHYRKLLDNHILATFADTDLRDITPAAVR 124 + + A EY W+++R + + TR Y+ I +T + ++TPA +R Sbjct 65 DRAKKAQASSITVEEYTRKWIEERPLAEGTRELYKIHARKRINPVLGETPVAELTPALIR 124 Query 125 RWYATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHKIRPATLDE 184 W+A R +Y + A+ QTA+ D L+ NPCRI + A R + T +E Sbjct 125 AWFAGMGNKHIAARRQTYRMFHAVCQTAVDDKLLSENPCRIEIKAEAER--DVEALTPEE 182 Query 185 LETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGE--VARVRRAVVRVGEGFK 242 LE + + + Y+ V + AW ++R+GEL ELRRKDID GE + RVRR RVG+ Sbjct 183 LEIVAAEVHEHYRVAVYILAWTSLRFGELIELRRKDIDDDGETMLFRVRRGAARVGQKIV 242 Query 243 VTTPKSDAGVRDISIPPHLIPAIEDHL--HKHVNPGRESLLFPSVNDPNRHLAPSALYRM 300 V K+ R +++PPH+ + +H+ +N G E+LL + + L+ SA R Sbjct 243 VGNTKTVRSKRPVTVPPHVAQMVREHMADRSKMNKGPEALLVTTTQ--GQRLSKSAFTRS 300 Query 301 FYKARKAAGRPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAKGRDR 360 K GR DLRVHDLR GA AA GAT ELM RLGH+T A++YQ A++ RD Sbjct 301 LKKGYAKIGRTDLRVHDLRAVGATYAAQAGATTKELMVRLGHTTPRMAMKYQMASEARDV 360 Query 361 EIAALLSKLAEN 372 EIA +S+LA + Sbjct 361 EIAKRMSELANS 372 >gi|29830271|ref|NP_824905.1| integrase [Streptomyces avermitilis MA-4680] gi|29607382|dbj|BAC71440.1| putative tyrosine-family recombinase/integrase [Streptomyces avermitilis MA-4680] Length=379 Score = 236 bits (602), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 154/379 (41%), Positives = 206/379 (55%), Gaps = 22/379 (5%) Query 6 KRQRRKFGRIRQFNSGRWQASYTGPD-GRVYIAPKTFNAKIDAEAWLTDRRREIDRQLWS 64 K +RR FG RQ SGRWQ Y P G + A KT+ K DA+ LT +I R W+ Sbjct 5 KGRRRSFGSCRQLASGRWQVRYRDPQTGLLRPAEKTYETKTDAQVALTHIEADITRGQWA 64 Query 65 -PASGQEDRPGAPFGEYAEGWLKQRGIKDRTRAHYRKLLDNHILATFADTDLRDITPAAV 123 P +G + F +YA WL+ R + DRTR ++ H++ F + D+T A V Sbjct 65 DPDAGDVN-----FADYATAWLRDRKLADRTRERNESVMRLHVVPVFGAGSIADVTTARV 119 Query 124 RRWYA---TTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHKI--R 178 R W VG PT+ +Y LLRA+M TA+ D+LI NPCRI GA + + + R Sbjct 120 RSWRGKLLAAGVGEPTV-VKAYQLLRALMNTAVDDELIRRNPCRIKGADS----YDVPER 174 Query 179 PA-TLDELETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVARVRRAVVRV 237 P ++ E+ + A+ Y+ VL+AA+ +R+GEL LRRKDIDL+G + VRRA + Sbjct 175 PVLSVAEVFGVAYAIAPRYRLLVLLAAFTTLRFGELAALRRKDIDLNGRLVVVRRAQAEL 234 Query 238 GEG-FKVTTPKSDAGVRDISIPPHLIPAIEDHLHKHVNPGRESLLFPSVNDPNRHLAPSA 296 G PKS AG+R +S P L+ I HL + G+E LF V L S Sbjct 235 QNGRLFDKAPKSAAGLRTVSFPAELVDEISHHLKHYAADGQEGHLF--VGPQGGQLRRSN 292 Query 297 LYRMFYKARKAAG-RPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAA 355 + KARKAAG P L HDLRH+G LA++ GA+ ELM R+GHS++ AAL YQH Sbjct 293 FRDDWIKARKAAGVSPKLHFHDLRHTGNTLASTAGASTRELMTRMGHSSSRAALIYQHMT 352 Query 356 KGRDREIAALLSKLAENQE 374 RDR IA L + N E Sbjct 353 SDRDRTIADRLGAMIRNGE 371 >gi|118464288|ref|YP_880725.1| integrase [Mycobacterium avium 104] gi|118165575|gb|ABK66472.1| integrase [Mycobacterium avium 104] Length=368 Score = 236 bits (601), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 150/375 (40%), Positives = 206/375 (55%), Gaps = 24/375 (6%) Query 15 IRQFNSGRWQASYTGPDGRVYIAPKTFNAKIDAEAWLT--------DRRREIDRQLWSPA 66 +RQ SGRWQASY +G V+ A TF K A WL DRRR + W+P Sbjct 1 MRQLPSGRWQASYLH-NGVVFKALATFPTKSSAGHWLQAEEDLIDLDRRRPGE---WTPP 56 Query 67 SGQEDRPGAP---FGEYAEGWLKQR-GIKDRTRAHYRKLLDNHILATFADTDLRDITPAA 122 + + R A YA+ WL + + RTR +Y+ LDNH+L D L DITP Sbjct 57 AERAARRQAEKLTLRTYAKTWLDNKTKLARRTRDNYQGHLDNHVLPALGDLGLADITPEH 116 Query 123 VRRWYATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGAST---ARRVHKIRP 179 VR W+A T A +Y++L + TA+ADDLID NPCRI GA+ ARR + Sbjct 117 VRTWFAGLGNEHETRNAQAYAVLNGVFNTAVADDLIDRNPCRIRGAAQVKHARRSVVLLD 176 Query 180 ATLDELETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVARVRRAVVRVGE 239 AT +L + + MPD + VL+A W +R GE+ LRR D+ G R+ R+V Sbjct 177 AT--QLTALAEKMPDDARLGVLLAGWCGLRKGEVFALRRGDVAADGSSVRIERSVTYREG 234 Query 240 GFKVTTPKSDAGVRDISIPPHLIPAIEDHLHKHVNPGRESLLFPSVNDPNRHLAPSALYR 299 F+V K+ R +S+PPH+ PA+ +HL +HV G ++L+F V A +R Sbjct 235 RFEVGPTKTRESRRVVSVPPHVRPAVLEHLQRHVADGDDALVF--VEPSTGSFAGEKRFR 292 Query 300 MFYK-ARKAAGRPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAKGR 358 ++ AR A G+PD+ HDLRH+ V+AA TGAT+ ELM RLGH++ ++RYQH A+GR Sbjct 293 TAWESARAAIGQPDMHFHDLRHAAGVMAAQTGATVRELMDRLGHTSPNMSMRYQHTAEGR 352 Query 359 DREIAALLSKLAENQ 373 +A LS LA Sbjct 353 AAALADKLSALASTN 367 >gi|328884043|emb|CCA57282.1| integrase [Streptomyces venezuelae ATCC 10712] Length=381 Score = 235 bits (599), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 155/379 (41%), Positives = 205/379 (55%), Gaps = 20/379 (5%) Query 6 KRQRRKFGRIRQFNSGRWQASYTGP-DGRVYIAPKTFNAKIDAEAWLTDRRREIDRQLW- 63 K QRR+FG +RQ SGRWQA Y P G AP TF+ K DA WLT EI R + Sbjct 5 KGQRRRFGTVRQLASGRWQARYRDPLSGETKSAPHTFDTKTDALVWLTTIEAEIIRGTYQ 64 Query 64 SPASGQEDRPGAPFGEYAEGWLKQRGIKDRTRAHYRKLLDNHILATFADTDLRDITPAAV 123 +P +G+ FG YA+ WLK R ++DRTR ++ HI TF L IT V Sbjct 65 APDAGK-----VAFGPYADDWLKHRKLEDRTRERSESVIRLHIKPTFGAGTLAAITTPRV 119 Query 124 RRWYAT---TAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHKIRPA 180 R W + VG PT+ +Y LLRAI+ TA+ D+LI NPCRI GA R RP Sbjct 120 RAWRTALLESGVGEPTV-VKAYQLLRAILNTAVDDELIRRNPCRIKGAD--RYDVPERPV 176 Query 181 -TLDELETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVARVRRAVVRVGE 239 T+ E+ + A+ ++ VL+AA+ +R+GEL LRR+D+DL V VRRA + + Sbjct 177 LTVAEVYAVADAIRPHHRVLVLLAAFTTLRFGELASLRRRDLDLTRSVVLVRRAQSELQD 236 Query 240 G-FKVTTPKSDAGVRDISIPPHLIPAIEDHLHKHVNPGRESLLFPSVNDPNRHLAPSALY 298 G PKS AGVR ++ P L+P + HL G++ LF P L + + Sbjct 237 GTLADKAPKSAAGVRPVAFPAELVPELTHHLEHFAGAGQDGHLF---QGPRGGLLRRSNF 293 Query 299 RMFYKARKAAG--RPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAK 356 R + A +AA D+ HDLRH+G LA+S GA+ ELM R+GHST AAL YQH Sbjct 294 RDDWTAARAAAGVSGDVHFHDLRHTGNTLASSAGASTRELMTRMGHSTTRAALIYQHMTS 353 Query 357 GRDREIAALLSKLAENQEM 375 RD+ IA L ++ M Sbjct 354 DRDQHIAGKLGEMIRQARM 372 >gi|317126229|ref|YP_004100341.1| integrase [Intrasporangium calvum DSM 43043] gi|315590317|gb|ADU49614.1| integrase family protein [Intrasporangium calvum DSM 43043] Length=375 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 145/364 (40%), Positives = 208/364 (58%), Gaps = 17/364 (4%) Query 5 GKRQRRKFGRIRQFNSGRWQASYTGPDGRVYIAPKTFNAKIDAEAWLTDRRREIDRQLWS 64 GK++ R+FG +R+ SG++QAS+ GP+G+ AP TF+ +++AE WL ++R+ W Sbjct 4 GKQRDRRFGSVRRLPSGKFQASFIGPNGKRQAAPNTFSTRVEAERWLLRVHESLEREEWR 63 Query 65 PASGQEDRPGAPFGEYAEGWLKQR-GIKDRTRAHYRKLLDNHILATFADTDLRDITPAAV 123 + Q R +YAE +L + + +R R+ + H L D + ITPA V Sbjct 64 DSGAQLGR--RTLKDYAESYLTENPNVGERWAETSRRNMRLH-LTPLLDMPVASITPAVV 120 Query 124 RRWYATTAVGTP--TMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHKIRP-A 180 R W+A GT T A +Y LLR+++ A+ D+ I NPC+I A T R K RP A Sbjct 121 RSWHAQALAGTGGRTSIAQTYRLLRSVLNMAVLDEAIQKNPCQIPRAGTDR--PKERPIA 178 Query 181 TLDELETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVARVRRAVVRVGEG 240 + E+ + +A+ Y+A V +AAW +R GEL LR D+DL RV + V + E Sbjct 179 SPAEVAALIEAITPRYRAAVALAAWCGLRRGELMALRVTDVDLEKATVRVDKTYVELLES 238 Query 241 FK--VTTPKSDAGVRDISIPPHLIPAIEDHLHKHVNPGRESLLFPSVNDPNRHLAPSALY 298 + PKS AG R +SIPPH++P + +HL P F V +A +ALY Sbjct 239 RRRFEKEPKSQAGRRVVSIPPHVLPLMAEHLETWAGPE-----FFFVGHDGTRMAGNALY 293 Query 299 RMFYKARKAAGRPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAKGR 358 + F +ARK G +L HDLRH+G LAA+TGA+LA+L +RLGHS+ AALRY HA +GR Sbjct 294 QAFVRARKVVG-VNLSFHDLRHTGQTLAAATGASLADLKRRLGHSSTAAALRYMHAVEGR 352 Query 359 DREI 362 D EI Sbjct 353 DAEI 356 >gi|15856|emb|CAA49810.1| integrase [Mycobacterium phage D29] gi|2358241|gb|AAB69102.1| integrase [Mycobacterium phage D29] Length=333 Score = 229 bits (585), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 136/337 (41%), Positives = 188/337 (56%), Gaps = 19/337 (5%) Query 45 IDAEAWLTDRRREIDRQLWSPASGQEDRPGAP---FGEYAEGWLKQR----GIKDRTRAH 97 +DAEAWL +R ID + W+P + +E + A EY + W+ +R G KD H Sbjct 1 MDAEAWLASEKRLIDNEEWTPPAEREKKAAASAITVEEYTKKWIAERDLAGGTKDLYSTH 60 Query 98 YRKLLDNHILATFADTDLRDITPAAVRRWYATTAVGTPTMRAHSYSLLRAIMQTALADDL 157 RK I DT + ++TPA VR W+A PT R H+Y++LRA+M TA+ D L Sbjct 61 ARK----RIYPVLGDTPVAEMTPALVRAWWAGMGKQYPTARRHAYNVLRAVMNTAVEDKL 116 Query 158 IDSNPCRISGASTARRVHKIRPATLDELETITKAMPDPYQAFVLMAAWLAMRYGELTELR 217 + NPCRI + A R + T +EL+ + + + Y+ V + AW ++R+GEL E+R Sbjct 117 VSENPCRIEQKAPAER--DVEALTPEELDVVAGEVFEHYRVAVYILAWTSLRFGELIEIR 174 Query 218 RKDIDLHGEVA--RVRRAVVRVGEGFKVTTPKSDAGVRDISIPPHLIPAIEDHL--HKHV 273 RKDI GE RVRR RVGE V K+ R +++PPH+ I +H+ + Sbjct 175 RKDIVDDGETMKLRVRRGAARVGEKIVVGNTKTVRSKRPVTVPPHVAAMIREHMADRTKM 234 Query 274 NPGRESLLFPSVNDPNRHLAPSALYRMFYKARKAAGRPDLRVHDLRHSGAVLAASTGATL 333 N G E+LL + + L+ SA R K GRPDLR+HDLR GA LAA GAT Sbjct 235 NKGPEALLVTTTR--GQRLSKSAFTRSLKKGYAKIGRPDLRIHDLRAVGATLAAQAGATT 292 Query 334 AELMQRLGHSTAGAALRYQHAAKGRDREIAALLSKLA 370 ELM RLGH+T A++YQ A+ RD EIA +S+LA Sbjct 293 KELMVRLGHTTPRMAMKYQMASAARDEEIARRMSELA 329 >gi|119952269|ref|YP_949919.1| integrase [Arthrobacter aurescens TC1] gi|119951399|gb|ABM10309.1| Integrase [Arthrobacter aurescens TC1] Length=374 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 149/370 (41%), Positives = 204/370 (56%), Gaps = 16/370 (4%) Query 8 QRRKFGRIRQFNSGRWQASYTGPDGRVYIAPKTFNAKIDAEAWLTDRRREIDRQLWSPAS 67 +RR+FG +R+ SGRWQAS+ GP G+ AP TF + DA+ WL ++ R W Sbjct 3 RRRRFGLVRKLPSGRWQASFIGPAGKRQAAPHTFATRADADRWLAAVELDLSRGTWV--- 59 Query 68 GQEDRPGAPFGEYAEGWLK-QRGIKDRTRAHYRKLLDNHILATFADTDLRDITPAAVRRW 126 E PF +YAE WL R + R+R + + L H LA A +R +TP VR W Sbjct 60 -DERAASVPFLDYAEQWLNDNRRLGPRSRETHERNLRLH-LAPLATMPVRSLTPTLVRTW 117 Query 127 YATT--AVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHKIRPATLDE 184 YAT G T SY LLRAI+ TA+ + L+ NPC+I GA R + A+ + Sbjct 118 YATAMRGKGGNTSIDQSYRLLRAILNTAVREGLLAKNPCQIPGAGNTRAKRRT-VASPTQ 176 Query 185 LETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVARVRRAVVRVGEGFKV- 243 + + + +P PY+A V +AAW +R GE+ LRR D+DL V R V + Sbjct 177 VADLIREIPGPYKAAVALAAWGGLRRGEILALRRADLDLEAMTVSVHRNQVELLSSRSRF 236 Query 244 -TTPKSDAGVRDISIPPHLIPAIEDHLHKHVNPGRESLLFPSVNDPNRHLAPSALYRMFY 302 PK+DAG R +++PPH+IP + DHL + G + S P + +L + F Sbjct 237 DAKPKTDAGYRTVALPPHVIPLLRDHLRTYA--GETRVFVSSTGGP---MPGDSLTQAFS 291 Query 303 KARKAAGRPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAKGRDREI 362 +AR G R HDLRH+G LAA+TGATLA+LM+RLGHS+ AA+RY H GRD I Sbjct 292 RARDRLGMTGFRFHDLRHTGQTLAAATGATLADLMKRLGHSSPAAAMRYLHTVNGRDEAI 351 Query 363 AALLSKLAEN 372 A LS +AE+ Sbjct 352 AEALSVIAEH 361 >gi|138563|sp|P25426.1|VINT_BPMFR RecName: Full=Integrase gi|15091|emb|CAA45229.1| integrase [Mycobacterium phage FRAT1] Length=333 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 136/337 (41%), Positives = 187/337 (56%), Gaps = 19/337 (5%) Query 45 IDAEAWLTDRRREIDRQLWSPASGQEDRPGAP---FGEYAEGWLKQR----GIKDRTRAH 97 +DAEAWL +R ID + W+P + +E + A EY + W+ +R G KD H Sbjct 1 MDAEAWLASEKRLIDNEEWTPPAEREKKAAASAITVEEYTKKWIAERDLAGGTKDLYSTH 60 Query 98 YRKLLDNHILATFADTDLRDITPAAVRRWYATTAVGTPTMRAHSYSLLRAIMQTALADDL 157 RK I DT + ++TPA VR W+A PT R H+Y++LRA+M TA+ D L Sbjct 61 ARK----RIYPVLGDTPVAEMTPALVRAWWAGMGKQYPTARRHAYNVLRAVMNTAVEDKL 116 Query 158 IDSNPCRISGASTARRVHKIRPATLDELETITKAMPDPYQAFVLMAAWLAMRYGELTELR 217 + NPCRI + A R + T +EL+ + + + Y+ V + AW ++R+GEL E+R Sbjct 117 VSENPCRIEQKAPAER--DVEALTPEELDVVAGEVFEHYRVAVYILAWTSLRFGELIEIR 174 Query 218 RKDIDLHGEVA--RVRRAVVRVGEGFKVTTPKSDAGVRDISIPPHLIPAIEDHL--HKHV 273 RKDI GE RVRR RVGE V K+ R +++PPH+ I H+ + Sbjct 175 RKDIMDDGETMKLRVRRGPARVGEKIVVGNTKTVRSKRPVTVPPHVAAMIRAHMADRTKM 234 Query 274 NPGRESLLFPSVNDPNRHLAPSALYRMFYKARKAAGRPDLRVHDLRHSGAVLAASTGATL 333 N G E+LL + + L+ SA R K GRPDLR+HDLR GA LAA GAT Sbjct 235 NKGPEALLVTTTR--GQRLSKSAFTRSLKKGYAKIGRPDLRIHDLRAVGATLAAQAGATT 292 Query 334 AELMQRLGHSTAGAALRYQHAAKGRDREIAALLSKLA 370 ELM RLGH+T A++YQ A+ RD EIA +S+LA Sbjct 293 KELMVRLGHTTPRMAMKYQMASAARDEEIARRMSELA 329 >gi|88856274|ref|ZP_01130934.1| integrase [marine actinobacterium PHSC20C1] gi|88814593|gb|EAR24455.1| integrase [marine actinobacterium PHSC20C1] Length=402 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 141/364 (39%), Positives = 200/364 (55%), Gaps = 25/364 (6%) Query 29 GPDGRVYIAPKTFNAKIDAEAWLTDRRREIDRQLWSPASGQEDRPGAP-----FGEYAEG 83 GPDG+ Y PK++ +K +A AWLT R +D W+ AS D G YAE Sbjct 2 GPDGKRYRGPKSYASKTEARAWLTRVRTLLDSGDWNVASASADGAAKAGRTETLGPYAEK 61 Query 84 WLKQR------GIKDRTRAHYRKLLDNHILATFADTDLRDITPAAVRRWY-ATTAVGTPT 136 W+ R + T+ Y + +L ++ + ITP VR W A A G T Sbjct 62 WVLNRVKTNGEPLAPLTKKDYLSFI-RRLLPPLSEMRIAMITPTDVREWNEALRATGKIT 120 Query 137 MRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHKIRPATLDELETITKAMPDPY 196 A Y++LR+IM+ A+ D +I +PC++ GA A +++P T ELETI K + + Sbjct 121 QSARVYTVLRSIMEQAVDDGIIQVSPCKVRGAGNAVTGIEVKPPTAAELETIMKVIDPRF 180 Query 197 QAFVLMAAWLAMRYGELTELRRKDIDLHGE-VARVRRAVVRV----------GEGFKVTT 245 + +++ AW A+R+GE+TELRRKDI + E A+ R + V GEGF + Sbjct 181 KTMIVLGAWAALRFGEVTELRRKDILIVEEGTAKAPRTTIYVDVSRGVTHIPGEGFILRP 240 Query 246 PKSDAGVRDISIPPHLIPAIEDHLHKHVNPGRESLLFPSVNDPNRHLAPSALYRMFYKAR 305 PKS AGVR +++PPH+ + +HL V ESL++ +++ HLA S +Y AR Sbjct 241 PKSRAGVRIVALPPHVNDIVLEHLRDRVGEDPESLIYEAMSGGGHHLAASTWTDYWYPAR 300 Query 306 KAAGRPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAKGRDREIAAL 365 +AAGR DL H LRH GA A TGAT+ EL RLGH+T A+RYQH GR E+AA Sbjct 301 EAAGRGDLHFHALRHFGATAYALTGATIRELQDRLGHTTPNVAMRYQHTT-GRGAELAAK 359 Query 366 LSKL 369 +S+L Sbjct 360 MSEL 363 >gi|61106482|gb|AAX39006.1| int-OPT [synthetic construct] Length=386 Score = 222 bits (565), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 154/378 (41%), Positives = 204/378 (54%), Gaps = 24/378 (6%) Query 8 QRRKFGRIRQFNSGRWQASYTGPDGRV-YIAPKTFNAKIDAEAWLTDRRREIDRQLWSPA 66 RR+FG +R+ SGR+QAS+ P G AP TF K DA WLT +I R W Sbjct 12 SRRQFGSVRKLPSGRFQASFLPPGGGPRQNAPHTFKTKTDAHRWLTRVEADISRGTW--- 68 Query 67 SGQEDRP-GAPFGEYAEGWLKQR-GIKDRTRAHYRKLLDNHILATFADTDLRDITPAAVR 124 +DR G FG YA L+ I R R + L H L LR++T + VR Sbjct 69 --LDDRAAGETFGNYARAILRDSPKIGVRWRETCERNLRLH-LVPLVTVPLREVTASRVR 125 Query 125 RWYATTAVGTP--TMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHKIRP-AT 181 W+A G+ T + SY LR +M TA+ + +I +PC+I GA T R RP AT Sbjct 126 EWHAAALRGSGGRTSISQSYRFLRMVMNTAVREGIIARSPCQIPGAGTVRAAE--RPVAT 183 Query 182 LDELETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVARVRRAVVRV---- 237 ++ + +A+ Y+ VL+AAW +R GE+ LR D+DL VR+A V Sbjct 184 PAQVVALVEAINPRYRTAVLIAAWCGLRRGEIAGLRVADVDLTEHTITVRKARVEPLHDR 243 Query 238 GEGFKVTTPKSDAGVRDISIPPHLIPAIEDHLHKHVNPGRESLLFPSVNDPNRHLAPSAL 297 G+ F PKS+AG R I+IPPH++P I HL + G++ L P L L Sbjct 244 GKAFD-KDPKSEAGKRTIAIPPHVVPVIRLHLDEFA--GKDRLFVSRDGSP---LRGDTL 297 Query 298 YRMFYKARKAAGRPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAKG 357 Y+ F +AR G L HDLRH+G LAA TGATLA+LM+RLGHS+ AA RY HA G Sbjct 298 YQAFVRARGKVGLDTLTFHDLRHTGQTLAAQTGATLADLMKRLGHSSMAAARRYLHAVDG 357 Query 358 RDREIAALLSKLAENQEM 375 RDREIA LS+LA + ++ Sbjct 358 RDREIAKALSELAAHGDV 375 >gi|62195116|ref|YP_220445.1| hypothetical protein pMR2_03 [Micromonospora rosaria] gi|61106478|gb|AAX39003.1| Int [Micromonospora rosaria] Length=377 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 154/378 (41%), Positives = 204/378 (54%), Gaps = 24/378 (6%) Query 8 QRRKFGRIRQFNSGRWQASYTGPDGRV-YIAPKTFNAKIDAEAWLTDRRREIDRQLWSPA 66 RR+FG +R+ SGR+QAS+ P G AP TF K DA WLT +I R W Sbjct 3 SRRQFGSVRKLPSGRFQASFLPPGGGPRQNAPHTFKTKTDAHRWLTRVEADISRGTW--- 59 Query 67 SGQEDRP-GAPFGEYAEGWLKQR-GIKDRTRAHYRKLLDNHILATFADTDLRDITPAAVR 124 +DR G FG YA L+ I R R + L H L LR++T + VR Sbjct 60 --LDDRAAGETFGNYARAILRDSPKIGVRWRETCERNLRLH-LVPLVTVPLREVTASRVR 116 Query 125 RWYATTAVGTP--TMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHKIRP-AT 181 W+A G+ T + SY LR +M TA+ + +I +PC+I GA T R RP AT Sbjct 117 EWHAAALRGSGGRTSISQSYRFLRMVMNTAVREGIIARSPCQIPGAGTVRAAE--RPVAT 174 Query 182 LDELETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVARVRRAVVRV---- 237 ++ + +A+ Y+ VL+AAW +R GE+ LR D+DL VR+A V Sbjct 175 PAQVVALVEAINPRYRTAVLIAAWCGLRRGEIAGLRVADVDLTEHTITVRKARVEPLHDR 234 Query 238 GEGFKVTTPKSDAGVRDISIPPHLIPAIEDHLHKHVNPGRESLLFPSVNDPNRHLAPSAL 297 G+ F PKS+AG R I+IPPH++P I HL + G++ L P R L Sbjct 235 GKAFD-KDPKSEAGKRTIAIPPHVVPVIRLHLDEFA--GKDRLFVSRDGSPLRG---DTL 288 Query 298 YRMFYKARKAAGRPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAKG 357 Y+ F +AR G L HDLRH+G LAA TGATLA+LM+RLGHS+ AA RY HA G Sbjct 289 YQAFVRARGKVGLDTLTFHDLRHTGQTLAAQTGATLADLMKRLGHSSMAAARRYLHAVDG 348 Query 358 RDREIAALLSKLAENQEM 375 RDREIA LS+LA + ++ Sbjct 349 RDREIAKALSELAAHGDV 366 >gi|333026004|ref|ZP_08454068.1| putative integrase [Streptomyces sp. Tu6071] gi|332745856|gb|EGJ76297.1| putative integrase [Streptomyces sp. Tu6071] Length=389 Score = 219 bits (559), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 146/373 (40%), Positives = 201/373 (54%), Gaps = 13/373 (3%) Query 6 KRQRRKFGRIRQFNSGRWQASYTGPDGRVYIAPKTFNAKIDAEAWLTDRRREIDRQLWS- 64 K RR+FG +RQ+ SGRW ASY P G V AP TF K +AE WL+ ++ R W Sbjct 5 KGSRRRFGAVRQYRSGRWTASYPDPSGLVRRAPITFATKSEAEVWLSQVEADLTRGDWQD 64 Query 65 PASGQEDRPGAPFGEYAEGWLKQRGIKDRTRAHYRKLLDNHILATFADTDLRDITPAAVR 124 P +G + F YA W+ +RG+ T YR+LL HIL TF DL +ITP VR Sbjct 65 PDAGAVN-----FETYAVQWVAERGLSATTAELYRRLLRLHILPTFGTWDLDEITPPRVR 119 Query 125 RWYATTAV--GTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHKIRPATL 182 W A V GT T A +Y LL+AI++TA D+LI NPCRI GA + + AT+ Sbjct 120 TWRAERLVETGTATTVAKAYRLLKAILETATDDELIRRNPCRIRGAGKESAPER-QVATV 178 Query 183 DELETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVARVRRAVVRVGEGFK 242 +++ + A+ ++ V + A+ +R E ELRR+D+DL RVR A + G + Sbjct 179 AQVDALADALGPRWRLMVYLGAYGPLRPEEQAELRRRDVDLDTMTIRVRMAAPELTTGRR 238 Query 243 V-TTPKSDAGVRDISIPPHLIPAIEDHLHKHVNPGRESLLFPSVNDPNRHLAPSALYRMF 301 V KS+AG R I +P L + HL + G + LLF V + + S R + Sbjct 239 VPGDTKSEAGRRLIVLPSFLRTDLRRHLDWYAEKGPDGLLF--VGEKGKPFRRSTFGRKW 296 Query 302 YKARKAAGRPD-LRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAKGRDR 360 +AR+ G PD R +DLRH+G +A +GATL + M R G S+ AAL YQH+ R + Sbjct 297 RRAREVVGVPDGFRFYDLRHTGHTMATRSGATLKDTMVRAGQSSERAALIYQHSDLSRQQ 356 Query 361 EIAALLSKLAENQ 373 EIA L L + Sbjct 357 EIATGLDALVRTE 369 >gi|254384553|ref|ZP_04999893.1| integrase [Streptomyces sp. Mg1] gi|194343438|gb|EDX24404.1| integrase [Streptomyces sp. Mg1] Length=384 Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 145/363 (40%), Positives = 198/363 (55%), Gaps = 16/363 (4%) Query 7 RQRRKFGRIRQFNSGRWQASYTGPDGRVYIAPKTFNAKIDAEAWLTDRRREIDRQLWS-P 65 ++RR+FG RQ SGRWQA Y PDG AP+TF K DA+ WLT + +I R W+ P Sbjct 8 QRRREFGTTRQLPSGRWQARYWAPDGSRRTAPETFATKTDAQDWLTLTKADIQRNHWTDP 67 Query 66 ASGQEDRPGAPFGEYAEGWLKQRGIKDRTRAHYRKLLDNHILATFADTDLRDITPAAVRR 125 G+ + F EYA W+ +RG+ T YR+LL H+L F D DL +ITP AVR Sbjct 68 DVGKVN-----FEEYALKWVDERGLAATTDELYRRLLRLHVLPAFGDLDLDEITPQAVRT 122 Query 126 WYAT--TAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHKIRP-ATL 182 W A TA G T+ A Y LL+AIM+TA D+LI NPCRI GA + + K RP AT+ Sbjct 123 WRAERLTATGATTV-AKCYRLLKAIMETATDDELIRRNPCRIRGAGSEQ--AKERPTATV 179 Query 183 DELETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVARVRRAVVRVGEGFK 242 +++ + +AM ++ V A+ MR E LRR + L R+ A + G + Sbjct 180 AQVDALAEAMGPRWRLMVYFCAYGPMRPEEQAALRRTSVTLDPLAVRITEAAPELNTGRR 239 Query 243 VT-TPKSDAGVRDISIPPHLIPAIEDHLHKHVNPGRESLLFPSVNDPNRHLAPSALYRMF 301 V KS AGVR I +P L ++ HL + LLF V + ++ R + Sbjct 240 VEGDTKSAAGVRTIHLPAFLYMEVKRHLDWFAEKEPDGLLF--VGEKGAPFRRTSFGRKW 297 Query 302 YKARKAAGRP-DLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAKGRDR 360 KAR G P D R +DLRH+G L+ +GATL + M R G S+ AA+ YQH+ R + Sbjct 298 AKARAKVGLPKDFRFYDLRHTGHTLSTQSGATLKDTMVRAGQSSEKAAMIYQHSDDERQQ 357 Query 361 EIA 363 E+A Sbjct 358 EVA 360 >gi|227876810|ref|ZP_03994919.1| phage integrase family protein [Mobiluncus mulieris ATCC 35243] gi|227842707|gb|EEJ52907.1| phage integrase family protein [Mobiluncus mulieris ATCC 35243] Length=397 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 137/384 (36%), Positives = 211/384 (55%), Gaps = 22/384 (5%) Query 6 KRQRRKFGRIRQFNSGRWQASYTGPDGRVYIAPKTFNAKIDAEAWLTDRRREIDRQLWSP 65 ++ R+ FG I + SGR++A + +V +A +TF + A WL ++ I + L P Sbjct 16 RKSRKGFGSIEKLKSGRYRAYWRKGSIKV-LADETFPNRQLASDWLAAQQVAIAKGLIDP 74 Query 66 ASGQED----RPGAP-FGEYAEGWL----KQRGIKDRTRAHYRKLLDNHILATFADTDLR 116 +E+ + P F E+ E +L K+ G+K +T Y+ H+ TF D + Sbjct 75 ELAEEELSPVKADVPTFKEWKETYLARREKEGGMKPKTIQSYKSCFKAHLEDTFGDMLIN 134 Query 117 DITPAAVRRWYATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRV-- 174 IT V+ WY + R +Y + A+M A+ + LID++P + GA + + Sbjct 135 LITNQQVKDWYNSFDGKKLGARKSTYRVFSALMNAAVDEGLIDASPVHVKGAVSKKPTTD 194 Query 175 -HKIRPATLDELETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGE--VARVR 231 H+ AT D++ + +AMPD Y+ VL+A W ++R+GE+TELRRKD+ GE V V Sbjct 195 NHRNIVATCDQVSRLAEAMPDEYRIAVLLAFWCSLRFGEITELRRKDVRFKGEKAVISVT 254 Query 232 RAV-VRVGEGFKVTTPKSDAGVRDISIPPHLIPAIEDHLHKHVNPGRESLLFPSVNDPNR 290 RAV G G+ V PKS+AG+RDI++PP ++ ++ H+ K+V P +ESLL S + Sbjct 255 RAVQYAAGFGYTVGPPKSEAGIRDIAVPPTIVADLKGHIAKYVAPDKESLLVHSPASLVK 314 Query 291 HLAPSALYRMFYKARKAAGRPDL----RVHDLRHSGAVLAASTGATLAELMQRLGHSTAG 346 + ++ F KA++A PDL H LRHSG LA +GATLAELM R GH+ A Sbjct 315 WYSNKSMNGHFAKAKRAV--PDLDQRFTFHGLRHSGLTLAGQSGATLAELMHRAGHANAE 372 Query 347 AALRYQHAAKGRDREIAALLSKLA 370 + YQHA + RD IA +S ++ Sbjct 373 TVMIYQHATQDRDAAIAEKMSAIS 396 >gi|307701539|ref|ZP_07638556.1| site-specific recombinase, phage integrase family [Mobiluncus mulieris FB024-16] gi|307613218|gb|EFN92470.1| site-specific recombinase, phage integrase family [Mobiluncus mulieris FB024-16] Length=397 Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 136/384 (36%), Positives = 211/384 (55%), Gaps = 22/384 (5%) Query 6 KRQRRKFGRIRQFNSGRWQASYTGPDGRVYIAPKTFNAKIDAEAWLTDRRREIDRQLWSP 65 ++ R+ FG I + SGR++A + +V +A +TF + A WL ++ I + L P Sbjct 16 RKSRKGFGSIEKLKSGRYRAYWRKGSIKV-LADETFPNRQLASDWLAAQQVAIAKGLIDP 74 Query 66 ASGQED----RPGAP-FGEYAEGWL----KQRGIKDRTRAHYRKLLDNHILATFADTDLR 116 +E+ + P F E+ E +L K+ G+K +T Y+ H+ TF D + Sbjct 75 ELAEEELSPVKADVPTFKEWKETYLARREKEGGMKPKTIQSYKSCFKAHLEDTFGDMLIN 134 Query 117 DITPAAVRRWYATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRV-- 174 IT V+ WY + R +Y + A+M A+ + LID++P + GA + + Sbjct 135 LITNQQVKDWYNSFDGKKLGARKSTYRVFSALMNAAVDEGLIDASPVHVKGAVSKKPTTD 194 Query 175 -HKIRPATLDELETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGE--VARVR 231 H+ AT D++ + +AMPD Y+ VL+A W ++R+GE+TELRRKD+ GE V V Sbjct 195 NHRNIVATCDQVSRLAEAMPDEYRIAVLLAFWCSLRFGEITELRRKDVRFKGEKAVISVT 254 Query 232 RAV-VRVGEGFKVTTPKSDAGVRDISIPPHLIPAIEDHLHKHVNPGRESLLFPSVNDPNR 290 RAV G G+ V PKS+AG+RDI++PP ++ +++H+ K+V +ESLL S + Sbjct 255 RAVQYAAGFGYTVGPPKSEAGIRDIAVPPTIVADLKEHIAKYVASDKESLLVHSPASLVK 314 Query 291 HLAPSALYRMFYKARKAAGRPDL----RVHDLRHSGAVLAASTGATLAELMQRLGHSTAG 346 + ++ F KA++A PDL H LRHSG LA +GATLAELM R GH+ A Sbjct 315 WYSNKSMNGHFAKAKRAV--PDLDQRFTFHGLRHSGLTLAGQSGATLAELMHRAGHTNAE 372 Query 347 AALRYQHAAKGRDREIAALLSKLA 370 + YQHA + RD IA +S ++ Sbjct 373 TVMIYQHATQDRDAAIAEKMSAIS 396 >gi|324999072|ref|ZP_08120184.1| phage integrase [Pseudonocardia sp. P1] Length=381 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 147/376 (40%), Positives = 199/376 (53%), Gaps = 23/376 (6%) Query 10 RKFGRIRQFNSGRWQASYTGPDGRVYIAPKTFNAKIDAEAWLTDRRREIDRQLWS-PASG 68 R+FG IR+ SGR+QASY GPDGR AP TF K +AE WL E+ R W+ PA G Sbjct 10 RRFGLIRKLPSGRYQASYLGPDGRRRAAPDTFARKREAEQWLAAVETELLRDDWTDPALG 69 Query 69 QEDRPGAPFGEYAEGWLKQRGIKDRTRAHYRKLLDNHILATFADTDLRDITPAAVRRWYA 128 + P E+AE W+ + I RTR Y + H+ + D + I+ +R W A Sbjct 70 K-----IPLREFAEQWIAEHKISRRTREEYASVWRLHLASYLGDYPIGQISTDLIRSWRA 124 Query 129 TTA-VGTPTMR-AHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHKIRP-ATLDEL 185 T G R A +Y LLRA++ TA+ D LI NPCRI GA R RP AT+ ++ Sbjct 125 TLLREGRSEDRTAKAYRLLRAVLNTAVDDGLIKRNPCRIKGAGQHRTPE--RPTATVAQV 182 Query 186 ETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVARVRRAVVRVGEGFKVTT 245 ++ +P ++ VL AA+ +R+GEL LRR DIDL G V R + G Sbjct 183 TKLSGLVPPRFRVLVLAAAFTGLRWGELVALRRCDIDLDGGAVHVYRRLAEHKNGEIEAG 242 Query 246 P-KSDAGVRDISIPPHLIPAIEDHLHKHVNPGRESLLFPSVNDP-----NRHLAPSALYR 299 P KS AG R +++P L+ + +H+ ++ G E L+F D N H A + Sbjct 243 PTKSVAGARTVALPDVLVTELREHIAEYAEDGTEGLVFTGDRDGPLRRGNFHRATA---- 298 Query 300 MFYKARKAAGRPD-LRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAKGR 358 + + AAG P HDLRH+G LAA+ GA+ ELM R+GH + AAL YQHA R Sbjct 299 -WTRTVVAAGLPSGFHFHDLRHTGNHLAATAGASTRELMHRMGHGSMRAALIYQHATTER 357 Query 359 DREIAALLSKLAENQE 374 DR IA L+ L + E Sbjct 358 DRAIAQRLNDLVQGDE 373 >gi|219646794|gb|ACL30946.1| integrase [Integrating expression vector pJEB403+drrA] Length=332 Score = 212 bits (539), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 128/336 (39%), Positives = 181/336 (54%), Gaps = 13/336 (3%) Query 45 IDAEAWLTDRRREIDRQLWSPASGQEDRPGAP---FGEYAEGWLKQRGIKDRTRAHYRKL 101 +DAEAWL +R I+ + W+P + + A EY WL +R + D TR Y Sbjct 1 MDAEAWLAGEKRLIEMETWTPPQDRAKKAAASAITLEEYTRKWLVERDLADGTRDLYSGH 60 Query 102 LDNHILATFADTDLRDITPAAVRRWYATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSN 161 + I + + ++TPA VR W+A PT R H+Y++LRA+M TA+ D LI N Sbjct 61 AERRIYPVLGEVAVTEMTPALVRAWWAGMGRKHPTARRHAYNVLRAVMNTAVEDKLIAEN 120 Query 162 PCRIS-GASTARRVHKIRPATLDELETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKD 220 PCRI A+ R V + P +EL+ + + + Y+ + AW ++R+GEL ELRRKD Sbjct 121 PCRIEQKAADERDVEALTP---EELDIVAAEIFEHYRIAAYILAWTSLRFGELIELRRKD 177 Query 221 IDLHGEVA--RVRRAVVRVGEGFKVTTPKSDAGVRDISIPPHLIPAIEDHLH--KHVNPG 276 I G RVRR RVG V K+ R +++PPH+ I H+ +N G Sbjct 178 IVHDGMTMKLRVRRGASRVGNKIVVGNAKTVRSKRPVTVPPHVAEMIRAHMKDRTKMNKG 237 Query 277 RESLLFPSVNDPNRHLAPSALYRMFYKARKAAGRPDLRVHDLRHSGAVLAASTGATLAEL 336 E+ L + NR L+ SA + + GRP+LR+HDLR GA AA GAT EL Sbjct 238 PEAFLVTTTQG-NR-LSKSAFTKSLKRGYAKIGRPELRIHDLRAVGATFAAQAGATTKEL 295 Query 337 MQRLGHSTAGAALRYQHAAKGRDREIAALLSKLAEN 372 M RLGH+T A++YQ A++ RD IA +SKLA+ Sbjct 296 MARLGHTTPRMAMKYQMASEARDEAIAEAMSKLAKT 331 Lambda K H 0.320 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 718963958700 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40