BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2660c

Length=75
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|148662502|ref|YP_001284025.1|  hypothetical protein MRA_2690 [...   149    2e-34
gi|308371089|ref|ZP_07423789.2|  hypothetical protein TMCG_01907 ...   148    3e-34
gi|15609797|ref|NP_217176.1|  hypothetical protein Rv2660c [Mycob...   148    3e-34
gi|31793831|ref|NP_856324.1|  hypothetical protein Mb2678c [Mycob...   142    2e-32
gi|289448315|ref|ZP_06438059.1|  conserved hypothetical protein [...   121    3e-26
gi|340627666|ref|YP_004746118.1|  hypothetical protein MCAN_26911...   110    5e-23


>gi|148662502|ref|YP_001284025.1| hypothetical protein MRA_2690 [Mycobacterium tuberculosis H37Ra]
 gi|289553553|ref|ZP_06442763.1| hypothetical protein TBXG_01303 [Mycobacterium tuberculosis KZN 
605]
 gi|289746461|ref|ZP_06505839.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|148506654|gb|ABQ74463.1| hypothetical protein MRA_2690 [Mycobacterium tuberculosis H37Ra]
 gi|289438185|gb|EFD20678.1| hypothetical protein TBXG_01303 [Mycobacterium tuberculosis KZN 
605]
 gi|289686989|gb|EFD54477.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
Length=155

 Score =  149 bits (375),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 75/75 (100%), Positives = 75/75 (100%), Gaps = 0/75 (0%)

Query  1    VIAGVDQALAATGQASQRAAGASGGVTVGVGVGTEQRNLSVVAPSQFTFSSRSPDFVDET  60
            VIAGVDQALAATGQASQRAAGASGGVTVGVGVGTEQRNLSVVAPSQFTFSSRSPDFVDET
Sbjct  81   VIAGVDQALAATGQASQRAAGASGGVTVGVGVGTEQRNLSVVAPSQFTFSSRSPDFVDET  140

Query  61   AGQSWCAILGLNQFH  75
            AGQSWCAILGLNQFH
Sbjct  141  AGQSWCAILGLNQFH  155


>gi|308371089|ref|ZP_07423789.2| hypothetical protein TMCG_01907 [Mycobacterium tuberculosis SUMu003]
 gi|308329889|gb|EFP18740.1| hypothetical protein TMCG_01907 [Mycobacterium tuberculosis SUMu003]
Length=109

 Score =  148 bits (373),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 75/75 (100%), Positives = 75/75 (100%), Gaps = 0/75 (0%)

Query  1    VIAGVDQALAATGQASQRAAGASGGVTVGVGVGTEQRNLSVVAPSQFTFSSRSPDFVDET  60
            VIAGVDQALAATGQASQRAAGASGGVTVGVGVGTEQRNLSVVAPSQFTFSSRSPDFVDET
Sbjct  35   VIAGVDQALAATGQASQRAAGASGGVTVGVGVGTEQRNLSVVAPSQFTFSSRSPDFVDET  94

Query  61   AGQSWCAILGLNQFH  75
            AGQSWCAILGLNQFH
Sbjct  95   AGQSWCAILGLNQFH  109


>gi|15609797|ref|NP_217176.1| hypothetical protein Rv2660c [Mycobacterium tuberculosis H37Rv]
 gi|15842200|ref|NP_337237.1| hypothetical protein MT2736 [Mycobacterium tuberculosis CDC1551]
 gi|148823851|ref|YP_001288605.1| hypothetical protein TBFG_12676 [Mycobacterium tuberculosis F11]
 37 more sequence titles
 
gi|167967176|ref|ZP_02549453.1| hypothetical protein MtubH3_03692 [Mycobacterium tuberculosis 
H37Ra]
 gi|253798258|ref|YP_003031259.1| hypothetical protein TBMG_01313 [Mycobacterium tuberculosis KZN 
1435]
 gi|254232769|ref|ZP_04926096.1| hypothetical protein TBCG_02600 [Mycobacterium tuberculosis C]
 gi|254365324|ref|ZP_04981369.1| hypothetical protein TBHG_02596 [Mycobacterium tuberculosis str. 
Haarlem]
 gi|289444202|ref|ZP_06433946.1| hypothetical protein TBLG_01304 [Mycobacterium tuberculosis T46]
 gi|289570834|ref|ZP_06451061.1| hypothetical protein TBJG_04248 [Mycobacterium tuberculosis T17]
 gi|289751311|ref|ZP_06510689.1| hypothetical protein TBDG_02409 [Mycobacterium tuberculosis T92]
 gi|289758788|ref|ZP_06518166.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289762831|ref|ZP_06522209.1| hypothetical protein TBIG_02014 [Mycobacterium tuberculosis GM 
1503]
 gi|298526132|ref|ZP_07013541.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308375521|ref|ZP_07668047.1| hypothetical protein TMGG_02210 [Mycobacterium tuberculosis SUMu007]
 gi|308377083|ref|ZP_07668423.1| hypothetical protein TMHG_01858 [Mycobacterium tuberculosis SUMu008]
 gi|308378053|ref|ZP_07668654.1| hypothetical protein TMIG_03990 [Mycobacterium tuberculosis SUMu009]
 gi|308379274|ref|ZP_07668930.1| hypothetical protein TMJG_01644 [Mycobacterium tuberculosis SUMu010]
 gi|308380433|ref|ZP_07669193.1| hypothetical protein TMKG_03091 [Mycobacterium tuberculosis SUMu011]
 gi|308405931|ref|ZP_07669470.1| hypothetical protein TMLG_04099 [Mycobacterium tuberculosis SUMu012]
 gi|1550701|emb|CAB02360.1| HYPOTHETICAL PROTEIN Rv2660c [Mycobacterium tuberculosis H37Rv]
 gi|13882488|gb|AAK47051.1| hypothetical protein MT2736 [Mycobacterium tuberculosis CDC1551]
 gi|124601828|gb|EAY60838.1| hypothetical protein TBCG_02600 [Mycobacterium tuberculosis C]
 gi|134150837|gb|EBA42882.1| hypothetical protein TBHG_02596 [Mycobacterium tuberculosis str. 
Haarlem]
 gi|148722378|gb|ABR07003.1| hypothetical protein TBFG_12676 [Mycobacterium tuberculosis F11]
 gi|253319761|gb|ACT24364.1| hypothetical protein TBMG_01313 [Mycobacterium tuberculosis KZN 
1435]
 gi|289417121|gb|EFD14361.1| hypothetical protein TBLG_01304 [Mycobacterium tuberculosis T46]
 gi|289544588|gb|EFD48236.1| hypothetical protein TBJG_04248 [Mycobacterium tuberculosis T17]
 gi|289691898|gb|EFD59327.1| hypothetical protein TBDG_02409 [Mycobacterium tuberculosis T92]
 gi|289710337|gb|EFD74353.1| hypothetical protein TBIG_02014 [Mycobacterium tuberculosis GM 
1503]
 gi|289714352|gb|EFD78364.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298495926|gb|EFI31220.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308346031|gb|EFP34882.1| hypothetical protein TMGG_02210 [Mycobacterium tuberculosis SUMu007]
 gi|308348987|gb|EFP37838.1| hypothetical protein TMHG_01858 [Mycobacterium tuberculosis SUMu008]
 gi|308353712|gb|EFP42563.1| hypothetical protein TMIG_03990 [Mycobacterium tuberculosis SUMu009]
 gi|308357552|gb|EFP46403.1| hypothetical protein TMJG_01644 [Mycobacterium tuberculosis SUMu010]
 gi|308361497|gb|EFP50348.1| hypothetical protein TMKG_03091 [Mycobacterium tuberculosis SUMu011]
 gi|308365103|gb|EFP53954.1| hypothetical protein TMLG_04099 [Mycobacterium tuberculosis SUMu012]
 gi|326904272|gb|EGE51205.1| hypothetical protein TBPG_02170 [Mycobacterium tuberculosis W-148]
 gi|328458030|gb|AEB03453.1| hypothetical protein TBSG_01324 [Mycobacterium tuberculosis KZN 
4207]
 gi|344220487|gb|AEN01118.1| hypothetical protein MTCTRI2_2712 [Mycobacterium tuberculosis 
CTRI-2]
Length=75

 Score =  148 bits (373),  Expect = 3e-34, Method: Compositional matrix adjust.
 Identities = 74/75 (99%), Positives = 75/75 (100%), Gaps = 0/75 (0%)

Query  1   VIAGVDQALAATGQASQRAAGASGGVTVGVGVGTEQRNLSVVAPSQFTFSSRSPDFVDET  60
           +IAGVDQALAATGQASQRAAGASGGVTVGVGVGTEQRNLSVVAPSQFTFSSRSPDFVDET
Sbjct  1   MIAGVDQALAATGQASQRAAGASGGVTVGVGVGTEQRNLSVVAPSQFTFSSRSPDFVDET  60

Query  61  AGQSWCAILGLNQFH  75
           AGQSWCAILGLNQFH
Sbjct  61  AGQSWCAILGLNQFH  75


>gi|31793831|ref|NP_856324.1| hypothetical protein Mb2678c [Mycobacterium bovis AF2122/97]
 gi|121638534|ref|YP_978758.1| hypothetical protein BCG_2672c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224991028|ref|YP_002645715.1| hypothetical protein JTY_2666 [Mycobacterium bovis BCG str. Tokyo 
172]
 6 more sequence titles
 
gi|339632672|ref|YP_004724314.1| hypothetical protein MAF_26640 [Mycobacterium africanum GM041182]
 gi|31619425|emb|CAD94863.1| HYPOTHETICAL PROTEIN Mb2678c [Mycobacterium bovis AF2122/97]
 gi|121494182|emb|CAL72660.1| Hypothetical protein BCG_2672c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224774141|dbj|BAH26947.1| hypothetical protein JTY_2666 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|339332028|emb|CCC27734.1| hypothetical protein MAF_26640 [Mycobacterium africanum GM041182]
 gi|341602572|emb|CCC65248.1| hypothetical protein BCGM_2655c [Mycobacterium bovis BCG str. 
Moreau RDJ]
Length=73

 Score =  142 bits (357),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 72/73 (99%), Positives = 73/73 (100%), Gaps = 0/73 (0%)

Query  1   VIAGVDQALAATGQASQRAAGASGGVTVGVGVGTEQRNLSVVAPSQFTFSSRSPDFVDET  60
           +IAGVDQALAATGQASQRAAGASGGVTVGVGVGTEQRNLSVVAPSQFTFSSRSPDFVDET
Sbjct  1   MIAGVDQALAATGQASQRAAGASGGVTVGVGVGTEQRNLSVVAPSQFTFSSRSPDFVDET  60

Query  61  AGQSWCAILGLNQ  73
           AGQSWCAILGLNQ
Sbjct  61  AGQSWCAILGLNQ  73


>gi|289448315|ref|ZP_06438059.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289421273|gb|EFD18474.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length=75

 Score =  121 bits (304),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 73/75 (98%), Positives = 74/75 (99%), Gaps = 0/75 (0%)

Query  1   VIAGVDQALAATGQASQRAAGASGGVTVGVGVGTEQRNLSVVAPSQFTFSSRSPDFVDET  60
           +IAGVDQALAATGQASQRAAGASGGVTVGVGVGTEQRNLSVVAPSQFTFSSRS DFVDET
Sbjct  1   MIAGVDQALAATGQASQRAAGASGGVTVGVGVGTEQRNLSVVAPSQFTFSSRSRDFVDET  60

Query  61  AGQSWCAILGLNQFH  75
           AGQSWCAILGLNQFH
Sbjct  61  AGQSWCAILGLNQFH  75


>gi|340627666|ref|YP_004746118.1| hypothetical protein MCAN_26911 [Mycobacterium canettii CIPT 
140010059]
 gi|340005856|emb|CCC45022.1| putative uncharacterized protein mb2678c [Mycobacterium canettii 
CIPT 140010059]
Length=81

 Score =  110 bits (276),  Expect = 5e-23, Method: Compositional matrix adjust.
 Identities = 72/81 (89%), Positives = 73/81 (91%), Gaps = 8/81 (9%)

Query  1   VIAGVDQALAATGQASQRAAGASGGVTVGVGVGTEQ--------RNLSVVAPSQFTFSSR  52
           +IAGVDQALAATGQASQRAAGASGGVTVGVGVGTEQ        RNLSVVAPSQFTFSSR
Sbjct  1   MIAGVDQALAATGQASQRAAGASGGVTVGVGVGTEQGLAGCGHERNLSVVAPSQFTFSSR  60

Query  53  SPDFVDETAGQSWCAILGLNQ  73
           SPDFVDETAGQSWCAILGLNQ
Sbjct  61  SPDFVDETAGQSWCAILGLNQ  81



Lambda     K      H
   0.315    0.128    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 131059142040


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40