BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2662
Length=90
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609799|ref|NP_217178.1| hypothetical protein Rv2662 [Mycoba... 180 5e-44
gi|296164681|ref|ZP_06847247.1| conserved hypothetical protein [... 42.0 0.031
>gi|15609799|ref|NP_217178.1| hypothetical protein Rv2662 [Mycobacterium tuberculosis H37Rv]
gi|31793833|ref|NP_856326.1| hypothetical protein Mb2680 [Mycobacterium bovis AF2122/97]
gi|121638536|ref|YP_978760.1| hypothetical protein BCG_2674 [Mycobacterium bovis BCG str. Pasteur
1173P2]
39 more sequence titles
Length=90
Score = 180 bits (457), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 90/90 (100%), Positives = 90/90 (100%), Gaps = 0/90 (0%)
Query 1 MDDLTRLRRELLDRFDVRDFTDWPPASLRALIATYDPWIDMTASPPQPVSPGGPRLRLVR 60
MDDLTRLRRELLDRFDVRDFTDWPPASLRALIATYDPWIDMTASPPQPVSPGGPRLRLVR
Sbjct 1 MDDLTRLRRELLDRFDVRDFTDWPPASLRALIATYDPWIDMTASPPQPVSPGGPRLRLVR 60
Query 61 LTTNPSARAAPIGNGGDSSVCAGEKQCRPP 90
LTTNPSARAAPIGNGGDSSVCAGEKQCRPP
Sbjct 61 LTTNPSARAAPIGNGGDSSVCAGEKQCRPP 90
>gi|296164681|ref|ZP_06847247.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295899989|gb|EFG79429.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=99
Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/33 (55%), Positives = 23/33 (70%), Gaps = 0/33 (0%)
Query 4 LTRLRRELLDRFDVRDFTDWPPASLRALIATYD 36
+ LR E++DR D + F DW PA LRALIA +D
Sbjct 49 IEYLRAEVIDRLDAQPFEDWSPALLRALIAVFD 81
Lambda K H
0.319 0.138 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129182109240
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40