BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2664
Length=84
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609801|ref|NP_217180.1| hypothetical protein Rv2664 [Mycoba... 167 6e-40
gi|317124012|ref|YP_004098124.1| hypothetical protein Intca_0868... 78.6 3e-13
gi|320532219|ref|ZP_08033083.1| hypothetical protein HMPREF9057_... 76.3 2e-12
gi|308178681|ref|YP_003918087.1| hypothetical protein AARI_29270... 55.8 2e-06
gi|336320849|ref|YP_004600817.1| hypothetical protein Celgi_1742... 54.3 6e-06
gi|68535973|ref|YP_250678.1| hypothetical protein jk0896 [Coryne... 51.2 5e-05
gi|343522340|ref|ZP_08759306.1| hypothetical protein HMPREF9058_... 49.7 2e-04
gi|256377410|ref|YP_003101070.1| hypothetical protein Amir_3318 ... 49.7 2e-04
gi|254380879|ref|ZP_04996245.1| conserved hypothetical protein [... 49.3 2e-04
gi|111020587|ref|YP_703559.1| hypothetical protein RHA1_ro03598 ... 48.1 4e-04
gi|340528469|gb|AEK43674.1| hypothetical protein RAM_25980 [Amyc... 48.1 4e-04
gi|300786977|ref|YP_003767268.1| hypothetical protein AMED_5101 ... 47.8 5e-04
gi|297563226|ref|YP_003682200.1| hypothetical protein Ndas_4305 ... 47.8 5e-04
gi|145226035|ref|YP_001136689.1| hypothetical protein Mflv_5440 ... 47.8 6e-04
gi|343926886|ref|ZP_08766379.1| hypothetical protein GOALK_072_0... 47.4 7e-04
gi|288924369|ref|ZP_06418372.1| zinc finger C4 domain protein [F... 46.6 0.001
gi|84498280|ref|ZP_00997077.1| hypothetical protein JNB_19373 [J... 45.8 0.002
gi|304389410|ref|ZP_07371373.1| conserved hypothetical protein [... 45.8 0.002
gi|340358643|ref|ZP_08681155.1| hypothetical protein HMPREF9062_... 45.4 0.003
gi|256389432|ref|YP_003110996.1| Clp domain-containing protein [... 44.3 0.006
gi|183983417|ref|YP_001851708.1| hypothetical protein MMAR_3428 ... 44.3 0.006
gi|311744381|ref|ZP_07718183.1| universal bacterial protein YeaZ... 44.3 0.006
gi|320352535|ref|YP_004193874.1| hypothetical protein Despr_0401... 44.3 0.007
gi|298346885|ref|YP_003719572.1| hypothetical protein HMPREF0573... 44.3 0.007
gi|240168742|ref|ZP_04747401.1| hypothetical protein MkanA1_0547... 44.3 0.007
gi|290958456|ref|YP_003489638.1| hypothetical protein SCAB_40081... 43.9 0.007
gi|315656657|ref|ZP_07909544.1| conserved hypothetical protein [... 43.9 0.007
gi|170780954|ref|YP_001709286.1| hypothetical protein CMS_0515 [... 43.5 0.011
gi|296118396|ref|ZP_06836976.1| putative ClpX-like protein [Cory... 43.5 0.012
gi|271962527|ref|YP_003336723.1| ATP-dependent protease Clp ATPa... 42.7 0.016
gi|345015376|ref|YP_004817730.1| Clp domain-containing protein [... 42.7 0.019
gi|309811256|ref|ZP_07705047.1| conserved hypothetical protein [... 42.4 0.022
gi|119952785|ref|YP_950244.1| hypothetical protein AAur_pTC20080... 42.0 0.028
gi|154488734|ref|ZP_02029583.1| hypothetical protein BIFADO_0204... 42.0 0.028
gi|118618159|ref|YP_906491.1| hypothetical protein MUL_2703 [Myc... 42.0 0.031
gi|302545190|ref|ZP_07297532.1| Clp amino domain protein [Strept... 41.6 0.036
gi|227874754|ref|ZP_03992907.1| hypothetical protein HMPREF0577_... 41.6 0.041
gi|345013091|ref|YP_004815445.1| putative PAS/PAC sensor protein... 41.2 0.047
gi|229488961|ref|ZP_04382827.1| Clp amino domain protein [Rhodoc... 41.2 0.048
gi|111017265|ref|YP_700237.1| ATP-dependent Clp protease ATP-bin... 41.2 0.049
gi|118463869|ref|YP_882737.1| ATP-dependent Clp protease ATP-bin... 41.2 0.049
gi|226308784|ref|YP_002768744.1| hypothetical protein RER_52970 ... 41.2 0.053
gi|315655429|ref|ZP_07908329.1| conserved hypothetical protein [... 41.2 0.059
gi|318078498|ref|ZP_07985830.1| hypothetical protein SSA3_17719 ... 41.2 0.059
gi|254776001|ref|ZP_05217517.1| putative ATP-dependent Clp prote... 41.2 0.059
gi|336458834|gb|EGO37791.1| Clp amino terminal domain-containing... 40.8 0.064
gi|295839957|ref|ZP_06826890.1| conserved hypothetical protein [... 40.8 0.064
gi|308176680|ref|YP_003916086.1| hypothetical protein AARI_08950... 40.8 0.068
gi|308176216|ref|YP_003915622.1| hypothetical protein AARI_04170... 40.8 0.068
gi|296171946|ref|ZP_06852991.1| ATP-dependent Clp protease ATP-b... 40.8 0.069
>gi|15609801|ref|NP_217180.1| hypothetical protein Rv2664 [Mycobacterium tuberculosis H37Rv]
gi|15842203|ref|NP_337240.1| hypothetical protein MT2738 [Mycobacterium tuberculosis CDC1551]
gi|31793835|ref|NP_856328.1| hypothetical protein Mb2682 [Mycobacterium bovis AF2122/97]
76 more sequence titles
Length=84
Score = 167 bits (422), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 83/84 (99%), Positives = 84/84 (100%), Gaps = 0/84 (0%)
Query 1 VKHKTDIDEWLDTIEPNPADAHDASHLRRIIAAKEAVQTAESELRAAVNAARAAGDTWAA 60
+KHKTDIDEWLDTIEPNPADAHDASHLRRIIAAKEAVQTAESELRAAVNAARAAGDTWAA
Sbjct 1 MKHKTDIDEWLDTIEPNPADAHDASHLRRIIAAKEAVQTAESELRAAVNAARAAGDTWAA 60
Query 61 IGVALGITRQAAFQRFGPHSTASP 84
IGVALGITRQAAFQRFGPHSTASP
Sbjct 61 IGVALGITRQAAFQRFGPHSTASP 84
>gi|317124012|ref|YP_004098124.1| hypothetical protein Intca_0868 [Intrasporangium calvum DSM 43043]
gi|315588100|gb|ADU47397.1| hypothetical protein Intca_0868 [Intrasporangium calvum DSM 43043]
Length=81
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/69 (60%), Positives = 48/69 (70%), Gaps = 0/69 (0%)
Query 11 LDTIEPNPADAHDASHLRRIIAAKEAVQTAESELRAAVNAARAAGDTWAAIGVALGITRQ 70
LD ++P+ A DA+ RRI+AAK + AE ELR AV AAR AGD+W IG AL ITRQ
Sbjct 13 LDHLDPSTHPARDAASFRRILAAKNGLAVAEQELRDAVRAARQAGDSWTVIGAALDITRQ 72
Query 71 AAFQRFGPH 79
AA QRFG H
Sbjct 73 AAQQRFGEH 81
>gi|320532219|ref|ZP_08033083.1| hypothetical protein HMPREF9057_00952 [Actinomyces sp. oral taxon
171 str. F0337]
gi|320135555|gb|EFW27639.1| hypothetical protein HMPREF9057_00952 [Actinomyces sp. oral taxon
171 str. F0337]
Length=85
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/67 (59%), Positives = 48/67 (72%), Gaps = 0/67 (0%)
Query 11 LDTIEPNPADAHDASHLRRIIAAKEAVQTAESELRAAVNAARAAGDTWAAIGVALGITRQ 70
L+T++P+ A DA+H R IIAA V AE+EL AAV AR AGD+W IG ALG+TRQ
Sbjct 16 LETLDPSSTPARDAAHFRAIIAASRRVHDAETELHAAVARARQAGDSWTVIGAALGVTRQ 75
Query 71 AAFQRFG 77
AA +RFG
Sbjct 76 AAQKRFG 82
>gi|308178681|ref|YP_003918087.1| hypothetical protein AARI_29270 [Arthrobacter arilaitensis Re117]
gi|307746144|emb|CBT77116.1| hypothetical protein AARI_29270 [Arthrobacter arilaitensis Re117]
Length=222
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/64 (46%), Positives = 42/64 (66%), Gaps = 0/64 (0%)
Query 18 PADAHDASHLRRIIAAKEAVQTAESELRAAVNAARAAGDTWAAIGVALGITRQAAFQRFG 77
P ++A+ ++ + + E Q A++ L ++V ARA G +W AIG A GITRQAAF+RFG
Sbjct 24 PLPTNEANSVKAVALSIEIEQAAQAHLESSVAVARARGVSWQAIGNAFGITRQAAFKRFG 83
Query 78 PHST 81
ST
Sbjct 84 TIST 87
>gi|336320849|ref|YP_004600817.1| hypothetical protein Celgi_1742 [Cellvibrio gilvus ATCC 13127]
gi|336104430|gb|AEI12249.1| hypothetical protein Celgi_1742 [Cellvibrio gilvus ATCC 13127]
Length=186
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/48 (59%), Positives = 36/48 (75%), Gaps = 0/48 (0%)
Query 30 IIAAKEAVQTAESELRAAVNAARAAGDTWAAIGVALGITRQAAFQRFG 77
I +A++A++ A L AAV AARA G TWA IG LG++RQAAF+RFG
Sbjct 4 IRSAQQALEEARRTLDAAVQAARAQGSTWAQIGEELGMSRQAAFKRFG 51
>gi|68535973|ref|YP_250678.1| hypothetical protein jk0896 [Corynebacterium jeikeium K411]
gi|68263572|emb|CAI37060.1| hypothetical protein jk0896 [Corynebacterium jeikeium K411]
Length=195
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/51 (55%), Positives = 33/51 (65%), Gaps = 0/51 (0%)
Query 27 LRRIIAAKEAVQTAESELRAAVNAARAAGDTWAAIGVALGITRQAAFQRFG 77
L I +AV AE EL AV AR AG +WA IG AL ++RQAAF+RFG
Sbjct 4 LTNIRHTLQAVSLAEHELEDAVAQARNAGHSWADIGQALNVSRQAAFKRFG 54
>gi|343522340|ref|ZP_08759306.1| hypothetical protein HMPREF9058_1424 [Actinomyces sp. oral taxon
175 str. F0384]
gi|343401749|gb|EGV14255.1| hypothetical protein HMPREF9058_1424 [Actinomyces sp. oral taxon
175 str. F0384]
Length=83
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/77 (42%), Positives = 41/77 (54%), Gaps = 7/77 (9%)
Query 7 IDEWLDTIE-------PNPADAHDASHLRRIIAAKEAVQTAESELRAAVNAARAAGDTWA 59
++E LD IE P+P L RI A+ ++ AE EL AV AR G +W
Sbjct 4 VEEMLDEIENANNGDGPDPVATVGDPALARIAVAQIRLRAAERELDEAVMVARDVGLSWQ 63
Query 60 AIGVALGITRQAAFQRF 76
AIG LG+TRQ A +RF
Sbjct 64 AIGDVLGMTRQGANKRF 80
>gi|256377410|ref|YP_003101070.1| hypothetical protein Amir_3318 [Actinosynnema mirum DSM 43827]
gi|255921713|gb|ACU37224.1| hypothetical protein Amir_3318 [Actinosynnema mirum DSM 43827]
Length=216
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/62 (49%), Positives = 36/62 (59%), Gaps = 5/62 (8%)
Query 16 PNPADAHDASHLRRIIAAKEAVQTAESELRAAVNAARAAGDTWAAIGVALGITRQAAFQR 75
P+PA A + AA V ++ LR AV+ ARA G TW IG LG +RQAAFQR
Sbjct 45 PSPAGTLGA-----VKAAHHQVLASQELLRDAVDRARAEGRTWQEIGEVLGTSRQAAFQR 99
Query 76 FG 77
FG
Sbjct 100 FG 101
>gi|254380879|ref|ZP_04996245.1| conserved hypothetical protein [Streptomyces sp. Mg1]
gi|194339790|gb|EDX20756.1| conserved hypothetical protein [Streptomyces sp. Mg1]
Length=192
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/56 (49%), Positives = 36/56 (65%), Gaps = 1/56 (1%)
Query 22 HDA-SHLRRIIAAKEAVQTAESELRAAVNAARAAGDTWAAIGVALGITRQAAFQRF 76
HDA +LR + A++ + A LR AV ARAAG +W +G LG++RQAA QRF
Sbjct 31 HDAHGYLRLLDASRVGAEEASRLLREAVQGARAAGHSWDTVGRVLGVSRQAAQQRF 86
>gi|111020587|ref|YP_703559.1| hypothetical protein RHA1_ro03598 [Rhodococcus jostii RHA1]
gi|110820117|gb|ABG95401.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=193
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/64 (43%), Positives = 42/64 (66%), Gaps = 1/64 (1%)
Query 15 EPNPADAHD-ASHLRRIIAAKEAVQTAESELRAAVNAARAAGDTWAAIGVALGITRQAAF 73
E +P HD A++L + +A ++ + L +A+ AAR+AG +W +G ALG++RQAA
Sbjct 20 EIDPRLDHDPAAYLALVRLTSQARESVDELLVSAIAAARSAGHSWDTVGAALGMSRQAAQ 79
Query 74 QRFG 77
QRFG
Sbjct 80 QRFG 83
>gi|340528469|gb|AEK43674.1| hypothetical protein RAM_25980 [Amycolatopsis mediterranei S699]
Length=111
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/79 (44%), Positives = 42/79 (54%), Gaps = 16/79 (20%)
Query 11 LDTIEPNPADA-------HDA------SHLRRIIAAKEAVQTAESELRAAVNAARAAGDT 57
+ IE PAD HD S+LR + AA VQ L A V ARA G T
Sbjct 35 VSVIEGKPADVPLIAPWEHDLPLEQVLSNLRPVSAASTQVQ---DNLAAWVGKARALGGT 91
Query 58 WAAIGVALGITRQAAFQRF 76
W+ IG ALG+TRQ+A++RF
Sbjct 92 WSQIGEALGMTRQSAWERF 110
>gi|300786977|ref|YP_003767268.1| hypothetical protein AMED_5101 [Amycolatopsis mediterranei U32]
gi|299796491|gb|ADJ46866.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
Length=115
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/79 (44%), Positives = 42/79 (54%), Gaps = 16/79 (20%)
Query 11 LDTIEPNPADA-------HDA------SHLRRIIAAKEAVQTAESELRAAVNAARAAGDT 57
+ IE PAD HD S+LR + AA VQ L A V ARA G T
Sbjct 39 VSVIEGKPADVPLIAPWEHDLPLEQVLSNLRPVSAASTQVQ---DNLAAWVGKARALGGT 95
Query 58 WAAIGVALGITRQAAFQRF 76
W+ IG ALG+TRQ+A++RF
Sbjct 96 WSQIGEALGMTRQSAWERF 114
>gi|297563226|ref|YP_003682200.1| hypothetical protein Ndas_4305 [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296847674|gb|ADH69694.1| hypothetical protein Ndas_4305 [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length=192
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (56%), Gaps = 16/70 (22%)
Query 8 DEWLDTIEPNPADAHDASHLRRIIAAKEAVQTAESELRAAVNAARAAGDTWAAIGVALGI 67
D+W D+I RR ++ + A A+ +RA V AR G TW +G ALG+
Sbjct 19 DDWTDSI-------------RRAVSMQTA---ADDVVRAVVQQARQNGATWQVVGDALGV 62
Query 68 TRQAAFQRFG 77
+RQAAFQR+G
Sbjct 63 SRQAAFQRYG 72
>gi|145226035|ref|YP_001136689.1| hypothetical protein Mflv_5440 [Mycobacterium gilvum PYR-GCK]
gi|145218498|gb|ABP47901.1| hypothetical protein Mflv_5440 [Mycobacterium gilvum PYR-GCK]
Length=153
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/67 (42%), Positives = 38/67 (57%), Gaps = 0/67 (0%)
Query 11 LDTIEPNPADAHDASHLRRIIAAKEAVQTAESELRAAVNAARAAGDTWAAIGVALGITRQ 70
L I P D+ + + AA + AE+ + AAV AR AG TW IG LG++RQ
Sbjct 16 LGQILAAPVFNSDSDPIDLVRAAHQIRGGAEALMAAAVRQAREAGRTWQEIGQVLGVSRQ 75
Query 71 AAFQRFG 77
AAFQ++G
Sbjct 76 AAFQKYG 82
>gi|343926886|ref|ZP_08766379.1| hypothetical protein GOALK_072_01080 [Gordonia alkanivorans NBRC
16433]
gi|343763246|dbj|GAA13305.1| hypothetical protein GOALK_072_01080 [Gordonia alkanivorans NBRC
16433]
Length=210
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/63 (47%), Positives = 37/63 (59%), Gaps = 1/63 (1%)
Query 15 EPNPADAHDASHLRRIIAAKEAVQTAESELRAAVNAARAAGDTWAAIGVALGITRQAAFQ 74
EP A +A+ L R+ A + + AE L A +AR G TW IG +G+TRQAAFQ
Sbjct 25 EPGDPGAREAA-LTRVHDALQLGRRAEELLSATARSAREFGCTWQEIGDVVGVTRQAAFQ 83
Query 75 RFG 77
RFG
Sbjct 84 RFG 86
>gi|288924369|ref|ZP_06418372.1| zinc finger C4 domain protein [Frankia sp. EUN1f]
gi|288344282|gb|EFC78808.1| zinc finger C4 domain protein [Frankia sp. EUN1f]
Length=123
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/52 (49%), Positives = 35/52 (68%), Gaps = 3/52 (5%)
Query 25 SHLRRIIAAKEAVQTAESELRAAVNAARAAGDTWAAIGVALGITRQAAFQRF 76
SH+ R+ A ++ AE++LR+ V R G TW IG ALGITRQ+A++RF
Sbjct 71 SHIPRVAAH---IEQAEADLRSWVQELRRRGVTWTRIGEALGITRQSAWERF 119
>gi|84498280|ref|ZP_00997077.1| hypothetical protein JNB_19373 [Janibacter sp. HTCC2649]
gi|84381780|gb|EAP97663.1| hypothetical protein JNB_19373 [Janibacter sp. HTCC2649]
Length=187
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/51 (51%), Positives = 35/51 (69%), Gaps = 3/51 (5%)
Query 27 LRRIIAAKEAVQTAESELRAAVNAARAAGDTWAAIGVALGITRQAAFQRFG 77
+RR+ A+ +V+ L +V AARAAG +WAAIG LG++RQA QRFG
Sbjct 46 VRRVADAEGSVRHL---LHQSVGAARAAGHSWAAIGAELGMSRQAVQQRFG 93
>gi|304389410|ref|ZP_07371373.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
gi|304327220|gb|EFL94455.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
Length=91
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/79 (41%), Positives = 42/79 (54%), Gaps = 8/79 (10%)
Query 2 KHKTDIDEW-LDTIEPNPADA-------HDASHLRRIIAAKEAVQTAESELRAAVNAARA 53
K K +E+ L I+ +P D H+ LR I A+E + AE +L AV ARA
Sbjct 4 KTKLSDEEYALQFIKSDPQDIIRNAKAIHEGEILRLIQTARERKEAAEHDLVDAVRQARA 63
Query 54 AGDTWAAIGVALGITRQAA 72
G TW AIG LG++RQ A
Sbjct 64 EGVTWQAIGGLLGMSRQGA 82
>gi|340358643|ref|ZP_08681155.1| hypothetical protein HMPREF9062_0280 [Actinomyces sp. oral taxon
448 str. F0400]
gi|339886097|gb|EGQ75774.1| hypothetical protein HMPREF9062_0280 [Actinomyces sp. oral taxon
448 str. F0400]
Length=79
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/72 (42%), Positives = 39/72 (55%), Gaps = 3/72 (4%)
Query 8 DEWLDTIEPN---PADAHDASHLRRIIAAKEAVQTAESELRAAVNAARAAGDTWAAIGVA 64
D+ L IE + P + DA L I A+ + TAE+EL AV AR G +W IG
Sbjct 5 DDMLREIESDGAAPVASTDAPDLMAITLAQLRLATAEAELDEAVARARENGRSWQQIGDI 64
Query 65 LGITRQAAFQRF 76
LG+TRQ +RF
Sbjct 65 LGMTRQGVNKRF 76
>gi|256389432|ref|YP_003110996.1| Clp domain-containing protein [Catenulispora acidiphila DSM 44928]
gi|256355658|gb|ACU69155.1| Clp domain protein [Catenulispora acidiphila DSM 44928]
Length=282
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/36 (59%), Positives = 27/36 (75%), Gaps = 0/36 (0%)
Query 48 VNAARAAGDTWAAIGVALGITRQAAFQRFGPHSTAS 83
V+ ARAAG +WA IGVALG+++QA QRF P A+
Sbjct 49 VDEARAAGASWAQIGVALGVSKQAVQQRFVPREPAT 84
>gi|183983417|ref|YP_001851708.1| hypothetical protein MMAR_3428 [Mycobacterium marinum M]
gi|183176743|gb|ACC41853.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=123
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/57 (46%), Positives = 34/57 (60%), Gaps = 3/57 (5%)
Query 20 DAHDASHLRRIIAAKEAVQTAESELRAAVNAARAAGDTWAAIGVALGITRQAAFQRF 76
D SH+ RI V E++LRA V R G TW+ +G ALGITRQ+A++RF
Sbjct 66 DQQMLSHIPRIAVMAGQV---EADLRAWVAELRRRGVTWSRVGEALGITRQSAWERF 119
>gi|311744381|ref|ZP_07718183.1| universal bacterial protein YeaZ [Aeromicrobium marinum DSM 15272]
gi|311312347|gb|EFQ82262.1| universal bacterial protein YeaZ [Aeromicrobium marinum DSM 15272]
Length=183
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/53 (51%), Positives = 36/53 (68%), Gaps = 0/53 (0%)
Query 25 SHLRRIIAAKEAVQTAESELRAAVNAARAAGDTWAAIGVALGITRQAAFQRFG 77
+HL ++ A + LR++V AARAAG +W AIG ALG++RQAA QRFG
Sbjct 30 AHLDLVVLTARATERMSDLLRSSVAAARAAGWSWEAIGSALGMSRQAAQQRFG 82
>gi|320352535|ref|YP_004193874.1| hypothetical protein Despr_0401 [Desulfobulbus propionicus DSM
2032]
gi|320121037|gb|ADW16583.1| hypothetical protein Despr_0401 [Desulfobulbus propionicus DSM
2032]
Length=97
Score = 44.3 bits (103), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/34 (48%), Positives = 26/34 (77%), Gaps = 0/34 (0%)
Query 44 LRAAVNAARAAGDTWAAIGVALGITRQAAFQRFG 77
++ A++ R+ G +W IG+ALG++RQ AFQR+G
Sbjct 44 VQVAIDGQRSFGRSWEHIGLALGLSRQGAFQRYG 77
>gi|298346885|ref|YP_003719572.1| hypothetical protein HMPREF0573_11759 [Mobiluncus curtisii ATCC
43063]
gi|298236946|gb|ADI68078.1| hypothetical protein HMPREF0573_11759 [Mobiluncus curtisii ATCC
43063]
Length=91
Score = 44.3 bits (103), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/79 (40%), Positives = 42/79 (54%), Gaps = 8/79 (10%)
Query 2 KHKTDIDEW-LDTIEPNPADA-------HDASHLRRIIAAKEAVQTAESELRAAVNAARA 53
K K +E+ L I+ +P D H+ LR I A++ + AE +L AV ARA
Sbjct 4 KTKLSDEEYALQFIKSDPQDIIRNVKAIHEGEILRLIQTARDRKEAAEHDLVDAVRQARA 63
Query 54 AGDTWAAIGVALGITRQAA 72
G TW AIG LG++RQ A
Sbjct 64 EGVTWQAIGGLLGMSRQGA 82
>gi|240168742|ref|ZP_04747401.1| hypothetical protein MkanA1_05475 [Mycobacterium kansasii ATCC
12478]
Length=123
Score = 44.3 bits (103), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/58 (42%), Positives = 34/58 (59%), Gaps = 3/58 (5%)
Query 19 ADAHDASHLRRIIAAKEAVQTAESELRAAVNAARAAGDTWAAIGVALGITRQAAFQRF 76
+D H+ R+ V E++LR+ V R G TW+ IG ALGITRQ+A++RF
Sbjct 65 SDKQMLGHIPRMAVVARQV---ETDLRSWVVELRRRGVTWSRIGAALGITRQSAWERF 119
>gi|290958456|ref|YP_003489638.1| hypothetical protein SCAB_40081 [Streptomyces scabiei 87.22]
gi|260647982|emb|CBG71087.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length=247
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/76 (39%), Positives = 43/76 (57%), Gaps = 9/76 (11%)
Query 7 IDEWLDTIE---PNPADA-HDASHLRRIIAAKEAVQTAESELRAAVNAARAAGDTWAAIG 62
+DE +D I+ P P D DA +IAA + A+ + V+ AR +G +W IG
Sbjct 13 LDELIDAIKKVHPEPLDQLQDA-----VIAADHLGEVADHLIGHFVDQARRSGASWTEIG 67
Query 63 VALGITRQAAFQRFGP 78
++G+TRQAA +RF P
Sbjct 68 KSMGVTRQAAQKRFVP 83
>gi|315656657|ref|ZP_07909544.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
gi|315492612|gb|EFU82216.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
Length=91
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/79 (40%), Positives = 42/79 (54%), Gaps = 8/79 (10%)
Query 2 KHKTDIDEW-LDTIEPNPADA-------HDASHLRRIIAAKEAVQTAESELRAAVNAARA 53
K K +E+ L I+ +P D H+ LR I A++ + AE +L AV ARA
Sbjct 4 KTKLSDEEYALQFIKSDPQDIIRNAKAIHEGEILRLIQTARDRKEAAEHDLVDAVRQARA 63
Query 54 AGDTWAAIGVALGITRQAA 72
G TW AIG LG++RQ A
Sbjct 64 EGVTWQAIGGLLGMSRQGA 82
>gi|170780954|ref|YP_001709286.1| hypothetical protein CMS_0515 [Clavibacter michiganensis subsp.
sepedonicus]
gi|169155522|emb|CAQ00634.1| hypothetical protein CMS0515 [Clavibacter michiganensis subsp.
sepedonicus]
Length=192
Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/53 (48%), Positives = 33/53 (63%), Gaps = 0/53 (0%)
Query 25 SHLRRIIAAKEAVQTAESELRAAVNAARAAGDTWAAIGVALGITRQAAFQRFG 77
++LR + + A LR AV++ARAAG +W IG L I+RQAA QRFG
Sbjct 33 AYLRLVATVADIDAEAHDTLRDAVHSARAAGASWERIGDTLRISRQAAQQRFG 85
>gi|296118396|ref|ZP_06836976.1| putative ClpX-like protein [Corynebacterium ammoniagenes DSM
20306]
gi|295968674|gb|EFG81919.1| putative ClpX-like protein [Corynebacterium ammoniagenes DSM
20306]
Length=223
Score = 43.5 bits (101), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/38 (58%), Positives = 25/38 (66%), Gaps = 0/38 (0%)
Query 40 AESELRAAVNAARAAGDTWAAIGVALGITRQAAFQRFG 77
A+ L + AR G TW IG ALGI+RQAAFQRFG
Sbjct 55 ADESLAHLITDARNRGVTWQVIGDALGISRQAAFQRFG 92
>gi|271962527|ref|YP_003336723.1| ATP-dependent protease Clp ATPase-like protein [Streptosporangium
roseum DSM 43021]
gi|270505702|gb|ACZ83980.1| ATP-dependent protease Clp ATPase subunit-like protein [Streptosporangium
roseum DSM 43021]
Length=123
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/57 (44%), Positives = 34/57 (60%), Gaps = 3/57 (5%)
Query 20 DAHDASHLRRIIAAKEAVQTAESELRAAVNAARAAGDTWAAIGVALGITRQAAFQRF 76
D SH+ R+ A + AE++LR+ R G TWA +G ALGITRQ+A+ RF
Sbjct 66 DEEMLSHIPRVAAH---IDQAEADLRSWAQELRRRGVTWARLGEALGITRQSAWGRF 119
>gi|345015376|ref|YP_004817730.1| Clp domain-containing protein [Streptomyces violaceusniger Tu
4113]
gi|344041725|gb|AEM87450.1| Clp domain protein [Streptomyces violaceusniger Tu 4113]
Length=249
Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/84 (31%), Positives = 46/84 (55%), Gaps = 1/84 (1%)
Query 1 VKHKTDIDEWLDTIEPNPADAHDASHLRRIIAAKEAVQTAESELRAAVNAARAAGDTWAA 60
+ H +D+ ++ I+ DA + +IAA+ + A+ + V+ AR +G +W
Sbjct 7 LSHPVRLDDLIEAIKKVHTDALE-QLTDAVIAAEHLDEVADHLIGHFVDQARRSGASWTD 65
Query 61 IGVALGITRQAAFQRFGPHSTASP 84
IG ++G+TRQAA +RF P + P
Sbjct 66 IGKSMGVTRQAAQKRFVPKAPGEP 89
>gi|309811256|ref|ZP_07705047.1| conserved hypothetical protein [Dermacoccus sp. Ellin185]
gi|308434796|gb|EFP58637.1| conserved hypothetical protein [Dermacoccus sp. Ellin185]
Length=106
Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/26 (70%), Positives = 22/26 (85%), Gaps = 0/26 (0%)
Query 52 RAAGDTWAAIGVALGITRQAAFQRFG 77
RA GD+WA IG +LGI++QAA QRFG
Sbjct 65 RAKGDSWAQIGESLGISKQAAQQRFG 90
>gi|119952785|ref|YP_950244.1| hypothetical protein AAur_pTC20080 [Arthrobacter aurescens TC1]
gi|119951915|gb|ABM10824.1| conserved hypothetical protein [Arthrobacter aurescens TC1]
Length=217
Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/51 (48%), Positives = 30/51 (59%), Gaps = 0/51 (0%)
Query 26 HLRRIIAAKEAVQTAESELRAAVNAARAAGDTWAAIGVALGITRQAAFQRF 76
HL I A ++ E +L AV AARA G +W IG A GITRQ A +R+
Sbjct 159 HLHAIQALGGQLKKIEMQLDEAVAAARADGISWDKIGRAFGITRQGAQKRW 209
>gi|154488734|ref|ZP_02029583.1| hypothetical protein BIFADO_02041 [Bifidobacterium adolescentis
L2-32]
gi|154082871|gb|EDN81916.1| hypothetical protein BIFADO_02041 [Bifidobacterium adolescentis
L2-32]
Length=102
Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/69 (41%), Positives = 40/69 (58%), Gaps = 9/69 (13%)
Query 15 EPNPADA-----HDASH-LRRIIAAKEAVQTAESELRAAVNAARAAGDTWAAIGVALGIT 68
EP P D +D S LRR+ + A+ + E+ AAV A+R G +W IG ALG+T
Sbjct 30 EPAPGDPTLDPRYDPSRELRRLNYQRHAL---DREIEAAVAASRGHGQSWNTIGRALGVT 86
Query 69 RQAAFQRFG 77
+AA +R+G
Sbjct 87 AEAARRRYG 95
>gi|118618159|ref|YP_906491.1| hypothetical protein MUL_2703 [Mycobacterium ulcerans Agy99]
gi|118570269|gb|ABL05020.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=124
Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/57 (43%), Positives = 34/57 (60%), Gaps = 3/57 (5%)
Query 20 DAHDASHLRRIIAAKEAVQTAESELRAAVNAARAAGDTWAAIGVALGITRQAAFQRF 76
D S++ RI V E++LRA V R G TW+ +G ALG+TRQ+A++RF
Sbjct 67 DQQMLSYIPRIAVVAGQV---EADLRAWVAELRRRGVTWSRVGGALGVTRQSAWERF 120
>gi|302545190|ref|ZP_07297532.1| Clp amino domain protein [Streptomyces hygroscopicus ATCC 53653]
gi|302462808|gb|EFL25901.1| Clp amino domain protein [Streptomyces himastatinicus ATCC 53653]
Length=253
Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/83 (32%), Positives = 45/83 (55%), Gaps = 1/83 (1%)
Query 1 VKHKTDIDEWLDTIEPNPADAHDASHLRRIIAAKEAVQTAESELRAAVNAARAAGDTWAA 60
+ H +D+ ++ I+ DA + +IAA A+ + V+ AR +G +W
Sbjct 13 MTHSVRLDDLIEAIKKTHTDALE-QLTDAVIAADHLGDVADHLIGHFVDQARRSGASWTD 71
Query 61 IGVALGITRQAAFQRFGPHSTAS 83
IG ++G+TRQAA +RF P +A+
Sbjct 72 IGKSMGVTRQAAQKRFVPKGSAA 94
>gi|227874754|ref|ZP_03992907.1| hypothetical protein HMPREF0577_0208 [Mobiluncus mulieris ATCC
35243]
gi|269976829|ref|ZP_06183804.1| conserved hypothetical protein [Mobiluncus mulieris 28-1]
gi|227844529|gb|EEJ54685.1| hypothetical protein HMPREF0577_0208 [Mobiluncus mulieris ATCC
35243]
gi|269935026|gb|EEZ91585.1| conserved hypothetical protein [Mobiluncus mulieris 28-1]
Length=82
Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/60 (42%), Positives = 32/60 (54%), Gaps = 6/60 (10%)
Query 17 NPADAHDASHLRRIIAAKEAVQTAESELRAAVNAARAAGDTWAAIGVALGITRQAAFQRF 76
NP D L I+ AK A A+ +R AV AR G TW +G LG+TRQAA ++
Sbjct 25 NPTD------LLAIMEAKNAQAKADLMMRQAVANARENGVTWQQVGDILGVTRQAAHSKY 78
>gi|345013091|ref|YP_004815445.1| putative PAS/PAC sensor protein [Streptomyces violaceusniger
Tu 4113]
gi|344039440|gb|AEM85165.1| putative PAS/PAC sensor protein [Streptomyces violaceusniger
Tu 4113]
Length=799
Score = 41.2 bits (95), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/49 (52%), Positives = 29/49 (60%), Gaps = 0/49 (0%)
Query 29 RIIAAKEAVQTAESELRAAVNAARAAGDTWAAIGVALGITRQAAFQRFG 77
R A E AE +R AV A R AG WA IG ALGI+ +AA +RFG
Sbjct 33 RCAAVAEVPGLAERLVRYAVLADRQAGAGWARIGAALGISAEAARRRFG 81
>gi|229488961|ref|ZP_04382827.1| Clp amino domain protein [Rhodococcus erythropolis SK121]
gi|229324465|gb|EEN90220.1| Clp amino domain protein [Rhodococcus erythropolis SK121]
Length=238
Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/78 (33%), Positives = 44/78 (57%), Gaps = 1/78 (1%)
Query 1 VKHKTDIDEWLDTIEPNPADAHDASHLRRIIAAKEAVQTAESELRAAVNAARAAGDTWAA 60
+ +K +D+ +D I+ DA D +IAA + A+ + V+ AR +G +W
Sbjct 3 MTNKVRLDDLIDAIKKVHTDALDQLS-DAVIAADHLGEVADHLIGHFVDQARRSGASWTE 61
Query 61 IGVALGITRQAAFQRFGP 78
IG ++G+++QAA +RF P
Sbjct 62 IGASMGVSKQAAQKRFVP 79
>gi|111017265|ref|YP_700237.1| ATP-dependent Clp protease ATP-binding subunit [Rhodococcus jostii
RHA1]
gi|110816795|gb|ABG92079.1| probable ATP-dependent Clp protease ATP-binding subunit [Rhodococcus
jostii RHA1]
Length=247
Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/72 (34%), Positives = 42/72 (59%), Gaps = 0/72 (0%)
Query 7 IDEWLDTIEPNPADAHDASHLRRIIAAKEAVQTAESELRAAVNAARAAGDTWAAIGVALG 66
+DE +D I+ A+A ++AA+ + A+ + V+ AR +G +W IG ++G
Sbjct 13 LDELIDAIKKVHAEAPLEQLTDAVLAAEHLGELADHLIGHFVDQARRSGASWTEIGKSMG 72
Query 67 ITRQAAFQRFGP 78
+T+QAA +RF P
Sbjct 73 VTKQAAQKRFVP 84
>gi|118463869|ref|YP_882737.1| ATP-dependent Clp protease ATP-binding subunit [Mycobacterium
avium 104]
gi|118165156|gb|ABK66053.1| putative ATP-dependent Clp protease ATP-binding subunit [Mycobacterium
avium 104]
Length=250
Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/78 (31%), Positives = 43/78 (56%), Gaps = 1/78 (1%)
Query 1 VKHKTDIDEWLDTIEPNPADAHDASHLRRIIAAKEAVQTAESELRAAVNAARAAGDTWAA 60
+ H +DE +D I+ D D ++AA+ + A+ + V+ AR +G +W
Sbjct 7 IAHSVRLDELIDAIKTTHPDVLD-QLADAVLAAEHLGEVADHLIGHFVDQARRSGASWTD 65
Query 61 IGVALGITRQAAFQRFGP 78
IG ++G+++QAA +RF P
Sbjct 66 IGKSMGVSKQAAQKRFVP 83
>gi|226308784|ref|YP_002768744.1| hypothetical protein RER_52970 [Rhodococcus erythropolis PR4]
gi|226187901|dbj|BAH36005.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length=242
Score = 41.2 bits (95), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/78 (33%), Positives = 44/78 (57%), Gaps = 1/78 (1%)
Query 1 VKHKTDIDEWLDTIEPNPADAHDASHLRRIIAAKEAVQTAESELRAAVNAARAAGDTWAA 60
+ +K +D+ +D I+ DA D +IAA + A+ + V+ AR +G +W
Sbjct 7 MTNKVRLDDLIDAIKKVHTDALDQLS-DAVIAADHLGEVADHLIGHFVDQARRSGASWTE 65
Query 61 IGVALGITRQAAFQRFGP 78
IG ++G+++QAA +RF P
Sbjct 66 IGASMGVSKQAAQKRFVP 83
>gi|315655429|ref|ZP_07908329.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
gi|315490369|gb|EFU79994.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
Length=91
Score = 41.2 bits (95), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 30/79 (38%), Positives = 41/79 (52%), Gaps = 8/79 (10%)
Query 2 KHKTDIDEW-LDTIEPNPADA-------HDASHLRRIIAAKEAVQTAESELRAAVNAARA 53
K K +E+ L I+ +P D + LR I A++ + AE +L AV ARA
Sbjct 4 KTKLSDEEYALQFIKSDPQDIIRNAKAIREGEILRLIQTARDRKEAAEHDLVDAVRQARA 63
Query 54 AGDTWAAIGVALGITRQAA 72
G TW AIG LG++RQ A
Sbjct 64 EGVTWQAIGGLLGMSRQGA 82
>gi|318078498|ref|ZP_07985830.1| hypothetical protein SSA3_17719 [Streptomyces sp. SA3_actF]
Length=159
Score = 41.2 bits (95), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/45 (45%), Positives = 31/45 (69%), Gaps = 0/45 (0%)
Query 33 AKEAVQTAESELRAAVNAARAAGDTWAAIGVALGITRQAAFQRFG 77
A+E + ES + AAV+ R+ G +W A+G ALG+T+QA +R+G
Sbjct 68 AQELRDSVESLVTAAVDFDRSLGFSWDAVGSALGVTKQAVHRRYG 112
>gi|254776001|ref|ZP_05217517.1| putative ATP-dependent Clp protease ATP-binding subunit [Mycobacterium
avium subsp. avium ATCC 25291]
Length=250
Score = 41.2 bits (95), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/78 (31%), Positives = 43/78 (56%), Gaps = 1/78 (1%)
Query 1 VKHKTDIDEWLDTIEPNPADAHDASHLRRIIAAKEAVQTAESELRAAVNAARAAGDTWAA 60
+ H +DE +D I+ D D ++AA+ + A+ + V+ AR +G +W
Sbjct 7 IAHPVRLDELIDAIKTTHPDVLD-QLADAVLAAEHLGEVADHLIGHFVDQARRSGASWTD 65
Query 61 IGVALGITRQAAFQRFGP 78
IG ++G+++QAA +RF P
Sbjct 66 IGKSMGVSKQAAQKRFVP 83
>gi|336458834|gb|EGO37791.1| Clp amino terminal domain-containing protein [Mycobacterium avium
subsp. paratuberculosis S397]
Length=250
Score = 40.8 bits (94), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 24/78 (31%), Positives = 43/78 (56%), Gaps = 1/78 (1%)
Query 1 VKHKTDIDEWLDTIEPNPADAHDASHLRRIIAAKEAVQTAESELRAAVNAARAAGDTWAA 60
+ H +DE +D I+ D D ++AA+ + A+ + V+ AR +G +W
Sbjct 7 IAHPVRLDELIDAIKTTHPDVLD-QLADAVLAAEHLGEVADHLIGHFVDQARRSGASWTD 65
Query 61 IGVALGITRQAAFQRFGP 78
IG ++G+++QAA +RF P
Sbjct 66 IGKSMGVSKQAAQKRFVP 83
>gi|295839957|ref|ZP_06826890.1| conserved hypothetical protein [Streptomyces sp. SPB74]
gi|295827721|gb|EDY43725.2| conserved hypothetical protein [Streptomyces sp. SPB74]
Length=150
Score = 40.8 bits (94), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/45 (45%), Positives = 31/45 (69%), Gaps = 0/45 (0%)
Query 33 AKEAVQTAESELRAAVNAARAAGDTWAAIGVALGITRQAAFQRFG 77
A+E + ES + AAV+ R+ G +W A+G ALG+T+QA +R+G
Sbjct 83 AQELRDSVESLVTAAVDFDRSLGFSWDAVGSALGVTKQAVHRRYG 127
>gi|308176680|ref|YP_003916086.1| hypothetical protein AARI_08950 [Arthrobacter arilaitensis Re117]
gi|307744143|emb|CBT75115.1| conserved hypothetical protein [Arthrobacter arilaitensis Re117]
Length=180
Score = 40.8 bits (94), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 27/70 (39%), Positives = 40/70 (58%), Gaps = 4/70 (5%)
Query 16 PNPAD---AHDASHLRRIIAAKEAVQTAESELRA-AVNAARAAGDTWAAIGVALGITRQA 71
P+P+D + R +AA + ++L++ AV A+A+G +WA IG LGI+RQA
Sbjct 22 PSPSDEDSMQSPEAVLRSVAAFGDIARVSTQLQSQAVATAQASGLSWAKIGKVLGISRQA 81
Query 72 AFQRFGPHST 81
A QRF T
Sbjct 82 AQQRFDTRRT 91
>gi|308176216|ref|YP_003915622.1| hypothetical protein AARI_04170 [Arthrobacter arilaitensis Re117]
gi|307743679|emb|CBT74651.1| conserved hypothetical protein [Arthrobacter arilaitensis Re117]
Length=180
Score = 40.8 bits (94), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/30 (67%), Positives = 25/30 (84%), Gaps = 0/30 (0%)
Query 47 AVNAARAAGDTWAAIGVALGITRQAAFQRF 76
AV+AA+ +G +WA IG ALGI+RQAA QRF
Sbjct 57 AVSAAQESGLSWAKIGNALGISRQAAQQRF 86
>gi|296171946|ref|ZP_06852991.1| ATP-dependent Clp protease ATP-binding subunit [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295893879|gb|EFG73651.1| ATP-dependent Clp protease ATP-binding subunit [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length=244
Score = 40.8 bits (94), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 25/80 (32%), Positives = 45/80 (57%), Gaps = 1/80 (1%)
Query 1 VKHKTDIDEWLDTIEPNPADAHDASHLRRIIAAKEAVQTAESELRAAVNAARAAGDTWAA 60
+ + +DE +D I+ DA D ++AA+ + A+ + V+ AR +G +W
Sbjct 7 IAYPVRLDELIDAIKSVHTDALD-QLADAVLAAEHLGEVADHLIGHFVDQARRSGASWTD 65
Query 61 IGVALGITRQAAFQRFGPHS 80
IG ++G+T+QAA +RF P +
Sbjct 66 IGKSMGVTKQAAQKRFVPRA 85
Lambda K H
0.315 0.126 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 131923386480
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40