BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2665

Length=93
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609802|ref|NP_217181.1|  hypothetical protein Rv2665 [Mycoba...   181    3e-44
gi|315441603|ref|YP_004074480.1|  RNA polymerase sigma factor, si...  78.2    4e-13
gi|258655053|ref|YP_003204209.1|  hypothetical protein Namu_4947 ...  43.5    0.009
gi|336117532|ref|YP_004572300.1|  hypothetical protein MLP_18830 ...  43.1    0.013
gi|258651520|ref|YP_003200676.1|  hypothetical protein Namu_1284 ...  43.1    0.013
gi|111026944|ref|YP_708922.1|  hypothetical protein RHA1_ro11117 ...  43.1    0.014
gi|120401572|ref|YP_951401.1|  hypothetical protein Mvan_0551 [My...  42.7    0.019
gi|296169419|ref|ZP_06851041.1|  conserved hypothetical protein [...  40.4    0.079
gi|289444360|ref|ZP_06434104.1|  conserved hypothetical protein [...  38.9    0.23 
gi|308232250|ref|ZP_07415430.2|  hypothetical protein TMAG_03193 ...  38.9    0.24 
gi|15609948|ref|NP_217327.1|  hypothetical protein Rv2811 [Mycoba...  38.9    0.26 
gi|289448470|ref|ZP_06438214.1|  conserved hypothetical protein [...  38.5    0.31 
gi|289575509|ref|ZP_06455736.1|  conserved hypothetical protein [...  36.2    1.4  
gi|226349348|ref|YP_002776462.1|  hypothetical protein ROP_pROB01...  36.2    1.9  


>gi|15609802|ref|NP_217181.1| hypothetical protein Rv2665 [Mycobacterium tuberculosis H37Rv]
 gi|15842204|ref|NP_337241.1| hypothetical protein MT2739 [Mycobacterium tuberculosis CDC1551]
 gi|31793837|ref|NP_856330.1| hypothetical protein Mb2684 [Mycobacterium bovis AF2122/97]
 42 more sequence titles
 Length=93

 Score =  181 bits (459),  Expect = 3e-44, Method: Compositional matrix adjust.
 Identities = 93/93 (100%), Positives = 93/93 (100%), Gaps = 0/93 (0%)

Query  1   MIVVRTAEAAEQALTEGQLVCPRRGCGDTLRRWRYGRRRHVRSLGSQVIDVRPQRVRCRR  60
           MIVVRTAEAAEQALTEGQLVCPRRGCGDTLRRWRYGRRRHVRSLGSQVIDVRPQRVRCRR
Sbjct  1   MIVVRTAEAAEQALTEGQLVCPRRGCGDTLRRWRYGRRRHVRSLGSQVIDVRPQRVRCRR  60

Query  61  CESTHVLLPAALQPRLGRGGGGQLRPGVWCTGR  93
           CESTHVLLPAALQPRLGRGGGGQLRPGVWCTGR
Sbjct  61  CESTHVLLPAALQPRLGRGGGGQLRPGVWCTGR  93


>gi|315441603|ref|YP_004074480.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium sp. 
Spyr1]
 gi|315265258|gb|ADU01999.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium sp. 
Spyr1]
Length=192

 Score = 78.2 bits (191),  Expect = 4e-13, Method: Compositional matrix adjust.
 Identities = 38/75 (51%), Positives = 50/75 (67%), Gaps = 2/75 (2%)

Query  1   MIVVRTAEAAEQALTEGQLVCPRRGCGDTLRRWRYGRRRHVRSLGSQVIDVRPQRVRCRR  60
           MIV+R  + AE  L +  + CP   CG TL +W Y R R VR+ G+  + VRP+R+RCR 
Sbjct  1   MIVIRRPQDAEAHLADAVMCCPH--CGGTLAKWGYARERTVRAPGAATVTVRPRRLRCRN  58

Query  61  CESTHVLLPAALQPR  75
           C +TH+LLP ALQPR
Sbjct  59  CTTTHILLPTALQPR  73


>gi|258655053|ref|YP_003204209.1| hypothetical protein Namu_4947 [Nakamurella multipartita DSM 
44233]
 gi|258558278|gb|ACV81220.1| hypothetical protein Namu_4947 [Nakamurella multipartita DSM 
44233]
Length=197

 Score = 43.5 bits (101),  Expect = 0.009, Method: Compositional matrix adjust.
 Identities = 26/62 (42%), Positives = 34/62 (55%), Gaps = 6/62 (9%)

Query  11  EQALTEGQLVCPRRGCGDTLRRWRYGRRRHVRSLGSQVIDVRPQRVRCRRCESTHVLLPA  70
           E  LT G + CP   C   L  W + RRR VR +G+    ++P+R RC  C  THVLLP 
Sbjct  12  ESRLTAGGVPCPV--CPGVLTPWGWARRREVRGVGT----LQPRRARCSLCLVTHVLLPV  65

Query  71  AL  72
            +
Sbjct  66  TV  67


>gi|336117532|ref|YP_004572300.1| hypothetical protein MLP_18830 [Microlunatus phosphovorus NM-1]
 gi|334685312|dbj|BAK34897.1| hypothetical protein MLP_18830 [Microlunatus phosphovorus NM-1]
Length=205

 Score = 43.1 bits (100),  Expect = 0.013, Method: Compositional matrix adjust.
 Identities = 30/73 (42%), Positives = 37/73 (51%), Gaps = 6/73 (8%)

Query  1   MIVVRTAEA-AEQALTEGQLVCPRRGCGDTLRRWRYGRRRHVRSLGSQVIDVRPQRVRCR  59
           M+ V    A  E  L  G+L CP  GC  +LR W + R R V  L   +   RP+R RC 
Sbjct  1   MLTVEADRAQVESRLAGGRLACP--GCAASLRPWGWARPRGVWGLPGLL---RPRRARCP  55

Query  60  RCESTHVLLPAAL  72
            C  THVLLP  +
Sbjct  56  GCGVTHVLLPVTV  68


>gi|258651520|ref|YP_003200676.1| hypothetical protein Namu_1284 [Nakamurella multipartita DSM 
44233]
 gi|258652264|ref|YP_003201420.1| hypothetical protein Namu_2051 [Nakamurella multipartita DSM 
44233]
 gi|258653877|ref|YP_003203033.1| hypothetical protein Namu_3745 [Nakamurella multipartita DSM 
44233]
 gi|258654633|ref|YP_003203789.1| hypothetical protein Namu_4521 [Nakamurella multipartita DSM 
44233]
 gi|258554745|gb|ACV77687.1| hypothetical protein Namu_1284 [Nakamurella multipartita DSM 
44233]
 gi|258555489|gb|ACV78431.1| hypothetical protein Namu_2051 [Nakamurella multipartita DSM 
44233]
 gi|258557102|gb|ACV80044.1| hypothetical protein Namu_3745 [Nakamurella multipartita DSM 
44233]
 gi|258557858|gb|ACV80800.1| hypothetical protein Namu_4521 [Nakamurella multipartita DSM 
44233]
Length=197

 Score = 43.1 bits (100),  Expect = 0.013, Method: Compositional matrix adjust.
 Identities = 27/65 (42%), Positives = 34/65 (53%), Gaps = 6/65 (9%)

Query  8   EAAEQALTEGQLVCPRRGCGDTLRRWRYGRRRHVRSLGSQVIDVRPQRVRCRRCESTHVL  67
           +  E  LT G + CP   C   L  W + RRR VR +G     +RP+R RC  C  THVL
Sbjct  9   DLVESRLTGGGVPCPV--CPGVLAPWGWARRRDVRGVGL----LRPRRARCSSCLITHVL  62

Query  68  LPAAL  72
           LP  +
Sbjct  63  LPVTV  67


>gi|111026944|ref|YP_708922.1| hypothetical protein RHA1_ro11117 [Rhodococcus jostii RHA1]
 gi|110825483|gb|ABH00764.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=218

 Score = 43.1 bits (100),  Expect = 0.014, Method: Compositional matrix adjust.
 Identities = 26/62 (42%), Positives = 32/62 (52%), Gaps = 4/62 (6%)

Query  11  EQALTEGQLVCPRRGCGDTLRRWRYGRRRHVRSLGSQVIDVRPQRVRCRRCESTHVLLPA  70
           E  L+ G + CP    G  L  W + R R V  + + V   RP+R RCR C  THVLLP 
Sbjct  12  ESRLSRGDMSCPS-CTGGVLAGWGFARPRPVAGMAAPV---RPRRARCRGCAVTHVLLPV  67

Query  71  AL  72
            L
Sbjct  68  TL  69


>gi|120401572|ref|YP_951401.1| hypothetical protein Mvan_0551 [Mycobacterium vanbaalenii PYR-1]
 gi|120401588|ref|YP_951417.1| hypothetical protein Mvan_0570 [Mycobacterium vanbaalenii PYR-1]
 gi|120402692|ref|YP_952521.1| hypothetical protein Mvan_1687 [Mycobacterium vanbaalenii PYR-1]
 7 more sequence titles
 Length=199

 Score = 42.7 bits (99),  Expect = 0.019, Method: Compositional matrix adjust.
 Identities = 28/69 (41%), Positives = 33/69 (48%), Gaps = 4/69 (5%)

Query  11  EQALTEGQLVCPRRGCGDTLRRWRYGRRRHVRSLGSQVIDVRPQRVRCRRCESTHVLLPA  70
           E  L+ G + CP    G  L  W + R R V  L      VRP+R RCR C  THVLLP 
Sbjct  12  ESRLSGGAIACPS-CVGGVLGGWGFARSRQVEGLDH---PVRPRRARCRSCLVTHVLLPV  67

Query  71  ALQPRLGRG  79
            +  R   G
Sbjct  68  TVLLRRAHG  76


>gi|296169419|ref|ZP_06851041.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295895921|gb|EFG75614.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=192

 Score = 40.4 bits (93),  Expect = 0.079, Method: Compositional matrix adjust.
 Identities = 25/62 (41%), Positives = 32/62 (52%), Gaps = 3/62 (4%)

Query  8   EAAEQALTEGQLVCPRRGCGDTLRRWRYGRRRHVRSLGSQVIDVRPQRVRCRRCESTHVL  67
           +  E+ L  G+L CP   C   L RW + R R +R     V  + P+R RC  C  THVL
Sbjct  37  DVVERRLAAGELSCP--ACSSVLARWGWARPRQLRGRDGSV-RLCPRRSRCTGCGVTHVL  93

Query  68  LP  69
           LP
Sbjct  94  LP  95


>gi|289444360|ref|ZP_06434104.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289417279|gb|EFD14519.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
Length=175

 Score = 38.9 bits (89),  Expect = 0.23, Method: Compositional matrix adjust.
 Identities = 27/70 (39%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query  1   MIVVRT-AEAAEQALTEGQLVCPRRGCGDTLRRWRYGRRRHVRSLGSQVIDVRPQRVRCR  59
           M+ V    +  E+ L  G+L CP   CG  L  W   R R +R     V ++ P+R RC 
Sbjct  1   MVTVEADVDQVERRLAAGELSCP--SCGGVLAGWGRARSRQLRGPAGPV-ELCPRRSRCT  57

Query  60  RCESTHVLLP  69
            C  THVLLP
Sbjct  58  GCGVTHVLLP  67


>gi|308232250|ref|ZP_07415430.2| hypothetical protein TMAG_03193 [Mycobacterium tuberculosis SUMu001]
 gi|308369866|ref|ZP_07419331.2| hypothetical protein TMBG_02945 [Mycobacterium tuberculosis SUMu002]
 gi|308371136|ref|ZP_07423946.2| hypothetical protein TMCG_02057 [Mycobacterium tuberculosis SUMu003]
 21 more sequence titles
 Length=215

 Score = 38.9 bits (89),  Expect = 0.24, Method: Compositional matrix adjust.
 Identities = 25/61 (41%), Positives = 32/61 (53%), Gaps = 3/61 (4%)

Query  11  EQALTEGQLVCPRRGCGDTLRRWRYGRRRHVRSLGSQVIDVRPQRVRCRRCESTHVLLPA  70
           E+ L  G+L CP   CG  L  W   R R +R     V ++ P+R RC  C  THVLLP 
Sbjct  25  ERRLAAGELSCP--SCGGVLAGWGRARSRQLRGPAGPV-ELCPRRSRCTGCGVTHVLLPV  81

Query  71  A  71
           +
Sbjct  82  S  82


>gi|15609948|ref|NP_217327.1| hypothetical protein Rv2811 [Mycobacterium tuberculosis H37Rv]
 gi|31793986|ref|NP_856479.1| hypothetical protein Mb2834 [Mycobacterium bovis AF2122/97]
 gi|121638690|ref|YP_978914.1| hypothetical protein BCG_2829 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 41 more sequence titles
 Length=202

 Score = 38.9 bits (89),  Expect = 0.26, Method: Compositional matrix adjust.
 Identities = 27/72 (38%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query  1   MIVVRT-AEAAEQALTEGQLVCPRRGCGDTLRRWRYGRRRHVRSLGSQVIDVRPQRVRCR  59
           M+ V    +  E+ L  G+L CP   CG  L  W   R R +R     V ++ P+R RC 
Sbjct  1   MVTVEADVDQVERRLAAGELSCP--SCGGVLAGWGRARSRQLRGPAGPV-ELCPRRSRCT  57

Query  60  RCESTHVLLPAA  71
            C  THVLLP +
Sbjct  58  GCGVTHVLLPVS  69


>gi|289448470|ref|ZP_06438214.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289421428|gb|EFD18629.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length=202

 Score = 38.5 bits (88),  Expect = 0.31, Method: Compositional matrix adjust.
 Identities = 27/72 (38%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query  1   MIVVRT-AEAAEQALTEGQLVCPRRGCGDTLRRWRYGRRRHVRSLGSQVIDVRPQRVRCR  59
           M+ V    +  E+ L  G+L CP   CG  L  W   R R +R     V ++ P+R RC 
Sbjct  1   MVTVEADVDQVERRLAAGELSCP--SCGGVLAGWGRARSRKLRGPAGPV-ELCPRRSRCT  57

Query  60  RCESTHVLLPAA  71
            C  THVLLP +
Sbjct  58  GCGVTHVLLPVS  69


>gi|289575509|ref|ZP_06455736.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289539940|gb|EFD44518.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
Length=202

 Score = 36.2 bits (82),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 26/72 (37%), Positives = 35/72 (49%), Gaps = 4/72 (5%)

Query  1   MIVVRT-AEAAEQALTEGQLVCPRRGCGDTLRRWRYGRRRHVRSLGSQVIDVRPQRVRCR  59
           M+ V    +  E+ L  G+L CP   CG  L  W     R +R     V ++ P+R RC 
Sbjct  1   MVTVEADVDQVERRLAAGELSCP--SCGGVLAGWGRAGSRQLRGPAGPV-ELCPRRSRCT  57

Query  60  RCESTHVLLPAA  71
            C  THVLLP +
Sbjct  58  GCGVTHVLLPVS  69


>gi|226349348|ref|YP_002776462.1| hypothetical protein ROP_pROB01-01110 [Rhodococcus opacus B4]
 gi|226245263|dbj|BAH55610.1| hypothetical protein [Rhodococcus opacus B4]
Length=195

 Score = 36.2 bits (82),  Expect = 1.9, Method: Compositional matrix adjust.
 Identities = 17/26 (66%), Positives = 19/26 (74%), Gaps = 0/26 (0%)

Query  50  DVRPQRVRCRRCESTHVLLPAALQPR  75
           D  P RVRCR C +TH+LLP ALQ R
Sbjct  51  DRAPTRVRCRDCGATHILLPTALQVR  76



Lambda     K      H
   0.327    0.141    0.468 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 127811470620


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40