BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2667

Length=252
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15842205|ref|NP_337242.1|  hypothetical protein MT2741 [Mycoba...   501    3e-140
gi|121638542|ref|YP_978766.1|  putative ATP-dependent protease AT...   500    7e-140
gi|289575365|ref|ZP_06455592.1|  ATP-dependent protease ATP-bindi...   499    1e-139
gi|340627668|ref|YP_004746120.1|  putative ATP-dependent protease...   489    2e-136
gi|307085360|ref|ZP_07494473.1|  ATP-dependent protease ATP-bindi...   454    5e-126
gi|289444209|ref|ZP_06433953.1|  ATP-dependent protease ATP-bindi...   396    2e-108
gi|183982062|ref|YP_001850353.1|  ATP-dependent protease ATP-bind...   384    6e-105
gi|118618632|ref|YP_906964.1|  ATP-dependent protease ATP-binding...   375    2e-102
gi|254776001|ref|ZP_05217517.1|  putative ATP-dependent Clp prote...   350    1e-94 
gi|336458834|gb|EGO37791.1|  Clp amino terminal domain-containing...   350    1e-94 
gi|118463869|ref|YP_882737.1|  ATP-dependent Clp protease ATP-bin...   350    2e-94 
gi|41408885|ref|NP_961721.1|  ClpX' [Mycobacterium avium subsp. p...   349    2e-94 
gi|296171946|ref|ZP_06852991.1|  ATP-dependent Clp protease ATP-b...   328    5e-88 
gi|342858462|ref|ZP_08715117.1|  ATP-dependent Clp protease ATP-b...   327    1e-87 
gi|254818544|ref|ZP_05223545.1|  putative ATP-dependent Clp prote...   327    1e-87 
gi|333991054|ref|YP_004523668.1|  ATP-dependent protease ATP-bind...   327    1e-87 
gi|108799192|ref|YP_639389.1|  Clp, N terminal [Mycobacterium sp....   320    1e-85 
gi|158315876|ref|YP_001508384.1|  Clp domain-containing protein [...   317    1e-84 
gi|226308784|ref|YP_002768744.1|  hypothetical protein RER_52970 ...   295    5e-78 
gi|118467977|ref|YP_887123.1|  Clp amino terminal domain-containi...   294    8e-78 
gi|229488961|ref|ZP_04382827.1|  Clp amino domain protein [Rhodoc...   293    2e-77 
gi|226359789|ref|YP_002777567.1|  hypothetical protein ROP_03750 ...   290    1e-76 
gi|312141795|ref|YP_004009131.1|  hypothetical protein REQ_44920 ...   283    1e-74 
gi|345015376|ref|YP_004817730.1|  Clp domain-containing protein [...   281    8e-74 
gi|288919577|ref|ZP_06413906.1|  Clp domain protein [Frankia sp. ...   278    4e-73 
gi|324998388|ref|ZP_08119500.1|  Clp domain-containing protein [P...   277    9e-73 
gi|302545190|ref|ZP_07297532.1|  Clp amino domain protein [Strept...   277    9e-73 
gi|294630610|ref|ZP_06709170.1|  Clp amino domain-containing prot...   276    2e-72 
gi|120403486|ref|YP_953315.1|  Clp N terminal domain-containing p...   276    3e-72 
gi|297159744|gb|ADI09456.1|  hypothetical protein SBI_06336 [Stre...   275    3e-72 
gi|145224488|ref|YP_001135166.1|  Clp N terminal domain-containin...   273    1e-71 
gi|315444819|ref|YP_004077698.1|  Clp amino terminal domain-conta...   273    2e-71 
gi|159036935|ref|YP_001536188.1|  Clp domain-containing protein [...   273    2e-71 
gi|291448795|ref|ZP_06588185.1|  clp domain-containing protein [S...   272    3e-71 
gi|239991790|ref|ZP_04712454.1|  putative ClpX protein [Streptomy...   272    4e-71 
gi|302553134|ref|ZP_07305476.1|  ATP-dependent Clp protease ATP-b...   271    8e-71 
gi|258655270|ref|YP_003204426.1|  Clp domain-containing protein [...   270    1e-70 
gi|297201367|ref|ZP_06918764.1|  Clp domain-containing protein [S...   270    1e-70 
gi|328884586|emb|CCA57825.1|  putative ClpX protein [Streptomyces...   269    2e-70 
gi|111017265|ref|YP_700237.1|  ATP-dependent Clp protease ATP-bin...   267    9e-70 
gi|290958456|ref|YP_003489638.1|  hypothetical protein SCAB_40081...   264    7e-69 
gi|318059348|ref|ZP_07978071.1|  Clp domain-containing protein [S...   263    2e-68 
gi|257056231|ref|YP_003134063.1|  Clp amino terminal domain-conta...   263    2e-68 
gi|336177887|ref|YP_004583262.1|  Clp domain-containing protein [...   262    3e-68 
gi|333022575|ref|ZP_08450639.1|  hypothetical protein STTU_0079 [...   262    4e-68 
gi|291006122|ref|ZP_06564095.1|  putative Clp protease subunit [S...   262    4e-68 
gi|302537311|ref|ZP_07289653.1|  Clp domain-containing protein [S...   262    4e-68 
gi|311894311|dbj|BAJ26719.1|  hypothetical protein KSE_08820 [Kit...   262    4e-68 
gi|134099843|ref|YP_001105504.1|  putative Clp protease subunit [...   261    5e-68 
gi|302559314|ref|ZP_07311656.1|  Clp amino domain-containing prot...   261    8e-68 


>gi|15842205|ref|NP_337242.1| hypothetical protein MT2741 [Mycobacterium tuberculosis CDC1551]
 gi|31793839|ref|NP_856332.1| ATP-dependent protease ATP-binding subunit ClpX' [Mycobacterium 
bovis AF2122/97]
 gi|57117011|ref|YP_177897.1| ATP-dependent protease ATP-binding subunit ClpC2 [Mycobacterium 
tuberculosis H37Rv]
 65 more sequence titles
 Length=252

 Score =  501 bits (1291),  Expect = 3e-140, Method: Compositional matrix adjust.
 Identities = 252/252 (100%), Positives = 252/252 (100%), Gaps = 0/252 (0%)

Query  1    MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG  60
            MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG
Sbjct  1    MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG  60

Query  61   ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS  120
            ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS
Sbjct  61   ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS  120

Query  121  EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVL  180
            EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVL
Sbjct  121  EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVL  180

Query  181  ELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGANA  240
            ELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGANA
Sbjct  181  ELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGANA  240

Query  241  AGATDAGATDAG  252
            AGATDAGATDAG
Sbjct  241  AGATDAGATDAG  252


>gi|121638542|ref|YP_978766.1| putative ATP-dependent protease ATP-binding subunit clpX' [Mycobacterium 
bovis BCG str. Pasteur 1173P2]
 gi|224991034|ref|YP_002645723.1| putative ATP-dependent protease ATP-binding subunit [Mycobacterium 
bovis BCG str. Tokyo 172]
 gi|121494190|emb|CAL72668.1| Possible ATP-dependent protease ATP-binding subunit clpX' [Mycobacterium 
bovis BCG str. Pasteur 1173P2]
 gi|224774149|dbj|BAH26955.1| putative ATP-dependent protease ATP-binding subunit [Mycobacterium 
bovis BCG str. Tokyo 172]
 gi|341602580|emb|CCC65256.1| possible ATP-dependent protease ATP-binding subunit clpX' [Mycobacterium 
bovis BCG str. Moreau RDJ]
Length=252

 Score =  500 bits (1288),  Expect = 7e-140, Method: Compositional matrix adjust.
 Identities = 251/252 (99%), Positives = 251/252 (99%), Gaps = 0/252 (0%)

Query  1    MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG  60
            MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG
Sbjct  1    MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG  60

Query  61   ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS  120
            ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGA SS
Sbjct  61   ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGATSS  120

Query  121  EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVL  180
            EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVL
Sbjct  121  EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVL  180

Query  181  ELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGANA  240
            ELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGANA
Sbjct  181  ELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGANA  240

Query  241  AGATDAGATDAG  252
            AGATDAGATDAG
Sbjct  241  AGATDAGATDAG  252


>gi|289575365|ref|ZP_06455592.1| ATP-dependent protease ATP-binding subunit clpC2 [Mycobacterium 
tuberculosis K85]
 gi|339632679|ref|YP_004724321.1| ATP-dependent protease ATP-binding SUBUNIT CLPC2 [Mycobacterium 
africanum GM041182]
 gi|289539796|gb|EFD44374.1| ATP-dependent protease ATP-binding subunit clpC2 [Mycobacterium 
tuberculosis K85]
 gi|339332035|emb|CCC27741.1| putative ATP-dependent protease ATP-binding SUBUNIT CLPC2 [Mycobacterium 
africanum GM041182]
Length=252

 Score =  499 bits (1285),  Expect = 1e-139, Method: Compositional matrix adjust.
 Identities = 251/252 (99%), Positives = 252/252 (100%), Gaps = 0/252 (0%)

Query  1    MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG  60
            MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG
Sbjct  1    MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG  60

Query  61   ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS  120
            ASWSDIGKS+GVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS
Sbjct  61   ASWSDIGKSIGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS  120

Query  121  EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVL  180
            EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVL
Sbjct  121  EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVL  180

Query  181  ELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGANA  240
            ELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGANA
Sbjct  181  ELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGANA  240

Query  241  AGATDAGATDAG  252
            AGATDAGATDAG
Sbjct  241  AGATDAGATDAG  252


>gi|340627668|ref|YP_004746120.1| putative ATP-dependent protease ATP-binding subunit CLPC2 [Mycobacterium 
canettii CIPT 140010059]
 gi|340005858|emb|CCC45024.1| putative ATP-dependent protease ATP-binding subunit CLPC2 [Mycobacterium 
canettii CIPT 140010059]
Length=247

 Score =  489 bits (1258),  Expect = 2e-136, Method: Compositional matrix adjust.
 Identities = 245/247 (99%), Positives = 246/247 (99%), Gaps = 0/247 (0%)

Query  1    MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG  60
            MPEPTPTAYPVRLDELI+AIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG
Sbjct  1    MPEPTPTAYPVRLDELIDAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG  60

Query  61   ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS  120
            ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS
Sbjct  61   ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS  120

Query  121  EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVL  180
            EITPDHLLLGVLTDPAALAT LLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVL
Sbjct  121  EITPDHLLLGVLTDPAALATVLLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVL  180

Query  181  ELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGANA  240
            ELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGANA
Sbjct  181  ELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGANA  240

Query  241  AGATDAG  247
            AGATDAG
Sbjct  241  AGATDAG  247


>gi|307085360|ref|ZP_07494473.1| ATP-dependent protease ATP-binding subunit clpC2 [Mycobacterium 
tuberculosis SUMu012]
 gi|308365089|gb|EFP53940.1| ATP-dependent protease ATP-binding subunit clpC2 [Mycobacterium 
tuberculosis SUMu012]
Length=230

 Score =  454 bits (1168),  Expect = 5e-126, Method: Compositional matrix adjust.
 Identities = 229/230 (99%), Positives = 230/230 (100%), Gaps = 0/230 (0%)

Query  23   VHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGASWSDIGKSMGVTKQAAQKRFV  82
            +HSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGASWSDIGKSMGVTKQAAQKRFV
Sbjct  1    MHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGASWSDIGKSMGVTKQAAQKRFV  60

Query  83   PRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASSEITPDHLLLGVLTDPAALATAL  142
            PRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASSEITPDHLLLGVLTDPAALATAL
Sbjct  61   PRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASSEITPDHLLLGVLTDPAALATAL  120

Query  143  LQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVLELTFREALRLGHNYIGTEHLLL  202
            LQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVLELTFREALRLGHNYIGTEHLLL
Sbjct  121  LQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVLELTFREALRLGHNYIGTEHLLL  180

Query  203  ALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGANAAGATDAGATDAG  252
            ALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGANAAGATDAGATDAG
Sbjct  181  ALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGANAAGATDAGATDAG  230


>gi|289444209|ref|ZP_06433953.1| ATP-dependent protease ATP-binding subunit clpC2 [Mycobacterium 
tuberculosis T46]
 gi|289417128|gb|EFD14368.1| ATP-dependent protease ATP-binding subunit clpC2 [Mycobacterium 
tuberculosis T46]
Length=252

 Score =  396 bits (1017),  Expect = 2e-108, Method: Compositional matrix adjust.
 Identities = 227/236 (97%), Positives = 227/236 (97%), Gaps = 0/236 (0%)

Query  1    MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG  60
            MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG
Sbjct  1    MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG  60

Query  61   ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS  120
            ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS
Sbjct  61   ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS  120

Query  121  EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVL  180
            EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVL
Sbjct  121  EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVL  180

Query  181  ELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLT  236
            ELTFREALR G        LLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLT
Sbjct  181  ELTFREALRAGPQLHRDRTLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLT  236


>gi|183982062|ref|YP_001850353.1| ATP-dependent protease ATP-binding subunit ClpC2 [Mycobacterium 
marinum M]
 gi|183175388|gb|ACC40498.1| ATP-dependent protease ATP-binding subunit ClpC2 [Mycobacterium 
marinum M]
Length=247

 Score =  384 bits (986),  Expect = 6e-105, Method: Compositional matrix adjust.
 Identities = 194/237 (82%), Positives = 207/237 (88%), Gaps = 0/237 (0%)

Query  1    MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG  60
            M E T   YPVRLDELI+AIK+VH++ LDQL+DAVLAAEHLGEIADHLIGHFVDQARRSG
Sbjct  1    MAESTKITYPVRLDELIDAIKQVHTNALDQLTDAVLAAEHLGEIADHLIGHFVDQARRSG  60

Query  61   ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS  120
            ASW+DIGKSMGVTKQAAQKRFVPRAEATTLD  QGF RFTPRAR+AVVAAQNAAH  A+ 
Sbjct  61   ASWTDIGKSMGVTKQAAQKRFVPRAEATTLDPEQGFGRFTPRARSAVVAAQNAAHQGAND  120

Query  121  EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVL  180
            EITPDHLLLGVL DPAALATALL+ Q ID   LR +V LP A  E P  IPFSGPARKVL
Sbjct  121  EITPDHLLLGVLADPAALATALLRMQAIDTEALRASVRLPAATGETPALIPFSGPARKVL  180

Query  181  ELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTG  237
            ELTFREALRLGHNYIGTEH+LLALLELEDG GPLHRSGV+KSRAEADL + L SLTG
Sbjct  181  ELTFREALRLGHNYIGTEHMLLALLELEDGAGPLHRSGVEKSRAEADLSSALESLTG  237


>gi|118618632|ref|YP_906964.1| ATP-dependent protease ATP-binding subunit ClpC2 [Mycobacterium 
ulcerans Agy99]
 gi|118570742|gb|ABL05493.1| ATP-dependent protease ATP-binding subunit ClpC2 [Mycobacterium 
ulcerans Agy99]
Length=247

 Score =  375 bits (964),  Expect = 2e-102, Method: Compositional matrix adjust.
 Identities = 191/237 (81%), Positives = 205/237 (87%), Gaps = 0/237 (0%)

Query  1    MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG  60
            M +PT   YPVRLDELI+AIK+VH++ L QL+DAVLAAEHLGEIADHLIGHFVDQAR SG
Sbjct  1    MADPTKITYPVRLDELIDAIKQVHTNALGQLTDAVLAAEHLGEIADHLIGHFVDQARGSG  60

Query  61   ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS  120
            ASW+DIGKSMGVTKQAAQKRFV RAEATTLD  QGF RFTPRAR+AVVAAQNAAH  A+ 
Sbjct  61   ASWTDIGKSMGVTKQAAQKRFVLRAEATTLDPEQGFGRFTPRARSAVVAAQNAAHQGAND  120

Query  121  EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVL  180
            EITPDHLLLGVL DPAALATALL+ Q ID   LR +V LP A  E P  IPFSGPARKVL
Sbjct  121  EITPDHLLLGVLADPAALATALLRMQAIDTEALRASVRLPAATGETPALIPFSGPARKVL  180

Query  181  ELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTG  237
            ELTFREALRLGHNYIGTEH+LLALLELEDG GPLHRSGV+KSRAEADL + L SLTG
Sbjct  181  ELTFREALRLGHNYIGTEHMLLALLELEDGAGPLHRSGVEKSRAEADLSSALESLTG  237


>gi|254776001|ref|ZP_05217517.1| putative ATP-dependent Clp protease ATP-binding subunit [Mycobacterium 
avium subsp. avium ATCC 25291]
Length=250

 Score =  350 bits (898),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 185/251 (74%), Positives = 200/251 (80%), Gaps = 5/251 (1%)

Query  1    MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG  60
            M EP   A+PVRLDELI+AIK  H DVLDQL+DAVLAAEHLGE+ADHLIGHFVDQARRSG
Sbjct  1    MSEPIRIAHPVRLDELIDAIKTTHPDVLDQLADAVLAAEHLGEVADHLIGHFVDQARRSG  60

Query  61   ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS  120
            ASW+DIGKSMGV+KQAAQKRFVPR EAT LD  QGF+RFTPRAR AVVAAQNAAH A + 
Sbjct  61   ASWTDIGKSMGVSKQAAQKRFVPR-EATILDPGQGFQRFTPRARGAVVAAQNAAHQAGNR  119

Query  121  EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVT----EPPQPIPFSGPA  176
            EITPDHLL+GVL+DPAALAT LL+ Q +D   LR A T   A      +PP  IPFSGPA
Sbjct  120  EITPDHLLIGVLSDPAALATVLLRLQHVDTDALRDAATAAIAALRADGDPPALIPFSGPA  179

Query  177  RKVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLT  236
            RKVLELT REALRLGHNY+GTEH LLALLELEDGDGPLHR GVDK R E DLI  L SL 
Sbjct  180  RKVLELTVREALRLGHNYVGTEHQLLALLELEDGDGPLHRGGVDKERVEVDLIRALESLG  239

Query  237  GANAAGATDAG  247
                 GA + G
Sbjct  240  SGKNVGAGEDG  250


>gi|336458834|gb|EGO37791.1| Clp amino terminal domain-containing protein [Mycobacterium avium 
subsp. paratuberculosis S397]
Length=250

 Score =  350 bits (898),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 185/251 (74%), Positives = 200/251 (80%), Gaps = 5/251 (1%)

Query  1    MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG  60
            M EP   A+PVRLDELI+AIK  H DVLDQL+DAVLAAEHLGE+ADHLIGHFVDQARRSG
Sbjct  1    MSEPIRIAHPVRLDELIDAIKTTHPDVLDQLADAVLAAEHLGEVADHLIGHFVDQARRSG  60

Query  61   ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS  120
            ASW+DIGKSMGV+KQAAQKRFVPR EAT LD  QGF+RFTPRAR AVVAAQNAAH A + 
Sbjct  61   ASWTDIGKSMGVSKQAAQKRFVPR-EATILDPGQGFQRFTPRARGAVVAAQNAAHQAGNR  119

Query  121  EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVT----EPPQPIPFSGPA  176
            EITPDHLL+GVL+DPAALAT LL+ Q +D   LR A T   A      +PP  IPFSGPA
Sbjct  120  EITPDHLLIGVLSDPAALATVLLRLQHVDTDALRDAATAAIAALRADGDPPALIPFSGPA  179

Query  177  RKVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLT  236
            RKVLELT REALRLGHNY+GTEH LLALLELEDGDGPLHR GVDK R E DLI  L SL 
Sbjct  180  RKVLELTVREALRLGHNYVGTEHQLLALLELEDGDGPLHRGGVDKERVEVDLIRALESLG  239

Query  237  GANAAGATDAG  247
                 GA + G
Sbjct  240  NGKNVGAGEDG  250


>gi|118463869|ref|YP_882737.1| ATP-dependent Clp protease ATP-binding subunit [Mycobacterium 
avium 104]
 gi|118165156|gb|ABK66053.1| putative ATP-dependent Clp protease ATP-binding subunit [Mycobacterium 
avium 104]
Length=250

 Score =  350 bits (897),  Expect = 2e-94, Method: Compositional matrix adjust.
 Identities = 183/251 (73%), Positives = 198/251 (79%), Gaps = 5/251 (1%)

Query  1    MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG  60
            M EP   A+ VRLDELI+AIK  H DVLDQL+DAVLAAEHLGE+ADHLIGHFVDQARRSG
Sbjct  1    MSEPIRIAHSVRLDELIDAIKTTHPDVLDQLADAVLAAEHLGEVADHLIGHFVDQARRSG  60

Query  61   ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS  120
            ASW+DIGKSMGV+KQAAQKRFVPR EAT LD  QGF+RFTPRAR AVVAAQNAAH A + 
Sbjct  61   ASWTDIGKSMGVSKQAAQKRFVPR-EATILDPGQGFQRFTPRARGAVVAAQNAAHQAGNR  119

Query  121  EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVT----EPPQPIPFSGPA  176
            EITPDHLL+GVL+DPAALAT LL+ Q +D   LR A T   A      +PP  IPFSGPA
Sbjct  120  EITPDHLLIGVLSDPAALATVLLRLQHVDTDALRDAATASIAALRADGDPPALIPFSGPA  179

Query  177  RKVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLT  236
            RKVLELT REALRLGHNY+GTEH LLALLELEDGDG LHR GVDK R E DLI  L SL 
Sbjct  180  RKVLELTVREALRLGHNYVGTEHQLLALLELEDGDGLLHRGGVDKERVEVDLIRALESLG  239

Query  237  GANAAGATDAG  247
                 GA + G
Sbjct  240  SGKNVGAGEDG  250


>gi|41408885|ref|NP_961721.1| ClpX' [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41397244|gb|AAS05104.1| ClpX' [Mycobacterium avium subsp. paratuberculosis K-10]
Length=250

 Score =  349 bits (895),  Expect = 2e-94, Method: Compositional matrix adjust.
 Identities = 184/251 (74%), Positives = 199/251 (80%), Gaps = 5/251 (1%)

Query  1    MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG  60
            M EP    +PVRLDELI+AIK  H DVLDQL+DAVLAAEHLGE+ADHLIGHFVDQARRSG
Sbjct  1    MSEPIRIVHPVRLDELIDAIKTTHPDVLDQLADAVLAAEHLGEVADHLIGHFVDQARRSG  60

Query  61   ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS  120
            ASW+DIGKSMGV+KQAAQKRFVPR EAT LD  QGF+RFTPRAR AVVAAQNAAH A + 
Sbjct  61   ASWTDIGKSMGVSKQAAQKRFVPR-EATILDPGQGFQRFTPRARGAVVAAQNAAHQAGNR  119

Query  121  EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVT----EPPQPIPFSGPA  176
            EITPDHLL+GVL+DPAALAT LL+ Q +D   LR A T   A      +PP  IPFSGPA
Sbjct  120  EITPDHLLIGVLSDPAALATVLLRLQHVDTDALRDAATAAIAALRADGDPPALIPFSGPA  179

Query  177  RKVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLT  236
            RKVLELT REALRLGHNY+GTEH LLALLELEDGDGPLHR GVDK R E DLI  L SL 
Sbjct  180  RKVLELTVREALRLGHNYVGTEHQLLALLELEDGDGPLHRGGVDKERVEVDLIRALESLG  239

Query  237  GANAAGATDAG  247
                 GA + G
Sbjct  240  NGKNVGAGEDG  250


>gi|296171946|ref|ZP_06852991.1| ATP-dependent Clp protease ATP-binding subunit [Mycobacterium 
parascrofulaceum ATCC BAA-614]
 gi|295893879|gb|EFG73651.1| ATP-dependent Clp protease ATP-binding subunit [Mycobacterium 
parascrofulaceum ATCC BAA-614]
Length=244

 Score =  328 bits (840),  Expect = 5e-88, Method: Compositional matrix adjust.
 Identities = 188/245 (77%), Positives = 203/245 (83%), Gaps = 4/245 (1%)

Query  1    MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG  60
            M EPT  AYPVRLDELI+AIK VH+D LDQL+DAVLAAEHLGE+ADHLIGHFVDQARRSG
Sbjct  1    MSEPTRIAYPVRLDELIDAIKSVHTDALDQLADAVLAAEHLGEVADHLIGHFVDQARRSG  60

Query  61   ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS  120
            ASW+DIGKSMGVTKQAAQKRFVPRAE  TLD  QGF RFTPRAR AVVAAQNAAH A ++
Sbjct  61   ASWTDIGKSMGVTKQAAQKRFVPRAEPATLDPEQGFGRFTPRARGAVVAAQNAAHEAGNA  120

Query  121  EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVL  180
            EITPDHLLLG+L DPAALAT LL  Q++D   LR AV LPPA  + P  IPFSGPARK L
Sbjct  121  EITPDHLLLGLLDDPAALATVLLHLQKVDTEALRAAVRLPPAGADTPDLIPFSGPARKAL  180

Query  181  ELTFREALRLGHNYIGTEHLLLALLELEDG---DGPLHRSGVDKSRAEADLITTLASLTG  237
            ELTFR+ALRLGHNYIGTEHLLLALLEL+D    +GPL R GVDK R EADL+  L SL G
Sbjct  181  ELTFRQALRLGHNYIGTEHLLLALLELDDSASDEGPLRRCGVDKDRVEADLVKALESL-G  239

Query  238  ANAAG  242
            A A G
Sbjct  240  ARAQG  244


>gi|342858462|ref|ZP_08715117.1| ATP-dependent Clp protease ATP-binding subunit [Mycobacterium 
colombiense CECT 3035]
 gi|342134166|gb|EGT87346.1| ATP-dependent Clp protease ATP-binding subunit [Mycobacterium 
colombiense CECT 3035]
Length=253

 Score =  327 bits (838),  Expect = 1e-87, Method: Compositional matrix adjust.
 Identities = 182/240 (76%), Positives = 192/240 (80%), Gaps = 4/240 (1%)

Query  1    MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG  60
            M EP   AYP+RLDELI+AIK    DVLDQL+DAVLAAEHLGEIADHLIGHFVDQARRSG
Sbjct  1    MSEPVRIAYPIRLDELIDAIKATRPDVLDQLADAVLAAEHLGEIADHLIGHFVDQARRSG  60

Query  61   ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS  120
            ASW+DIGKSMGVTKQAAQKRFVPRAE   LD  QGF RFTPRAR AVVAAQNAAH A + 
Sbjct  61   ASWTDIGKSMGVTKQAAQKRFVPRAEPAALDLEQGFTRFTPRARGAVVAAQNAAHEAGNG  120

Query  121  EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPP----AVTEPPQPIPFSGPA  176
            EITPDHLLLGVL D AALAT LL  Q +D   LR A T       A  +PPQ IPFSGPA
Sbjct  121  EITPDHLLLGVLGDAAALATVLLHLQRVDTEALRAAATQAIAALHADAQPPQLIPFSGPA  180

Query  177  RKVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLT  236
            RK LEL+ REALRLGHNY+GTEH LLALLELE GDGPLHR GVDK R EADLIT L SL+
Sbjct  181  RKALELSVREALRLGHNYVGTEHQLLALLELEGGDGPLHRHGVDKDRVEADLITALQSLS  240


>gi|254818544|ref|ZP_05223545.1| putative ATP-dependent Clp protease ATP-binding subunit [Mycobacterium 
intracellulare ATCC 13950]
Length=256

 Score =  327 bits (837),  Expect = 1e-87, Method: Compositional matrix adjust.
 Identities = 185/254 (73%), Positives = 197/254 (78%), Gaps = 8/254 (3%)

Query  1    MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG  60
            M EP   AYP+RLDELI AIK +H DVLDQL+DAVLAAEHLGEIADHLIGHFVDQARRSG
Sbjct  1    MSEPIRIAYPIRLDELITAIKTIHPDVLDQLTDAVLAAEHLGEIADHLIGHFVDQARRSG  60

Query  61   ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS  120
            ASW+DIGKSMGVTKQAAQKRFVPRAEATTL   QGF RFTPRAR AVVAAQNAAH A + 
Sbjct  61   ASWTDIGKSMGVTKQAAQKRFVPRAEATTLGPEQGFARFTPRARGAVVAAQNAAHEAGNG  120

Query  121  EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAV----TEPPQPIPFSGPA  176
            EITPDHLL+GVL D AALAT LL+ Q+ID   LR A     A      +PP+ IPFSGPA
Sbjct  121  EITPDHLLIGVLADAAALATVLLRLQKIDTEALRDAAAASIAALRVEDQPPELIPFSGPA  180

Query  177  RKVLELTFREALRLGHNYIGTEHLLLALLELEDGD---GPLHRSGVDKSRAEADLITTLA  233
            RK LELT REALRLGHNY+GTEH LLALLELE      GPLHR GVDK R EADLI  L 
Sbjct  181  RKALELTVREALRLGHNYVGTEHQLLALLELEAASSTPGPLHRCGVDKDRVEADLIAALD  240

Query  234  SLTGANAAGATDAG  247
            SL G  +  A D G
Sbjct  241  SLGGGKSV-APDGG  253


>gi|333991054|ref|YP_004523668.1| ATP-dependent protease ATP-binding subunit ClpC2 [Mycobacterium 
sp. JDM601]
 gi|333487022|gb|AEF36414.1| ATP-dependent protease ATP-binding subunit ClpC2 [Mycobacterium 
sp. JDM601]
Length=248

 Score =  327 bits (837),  Expect = 1e-87, Method: Compositional matrix adjust.
 Identities = 177/242 (74%), Positives = 195/242 (81%), Gaps = 0/242 (0%)

Query  1    MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG  60
            M +PT  A  VRLD+LINAI RVH + L++L+DAVL AEHLGE+ADHLIGHFVDQARRSG
Sbjct  1    MVDPTRLAPSVRLDDLINAIARVHENPLERLTDAVLTAEHLGEVADHLIGHFVDQARRSG  60

Query  61   ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS  120
            ASW++IG  MGVTKQAAQKRFVPRAEA  LD+ QGF RFTPRARNAVVAAQNAAHGA ++
Sbjct  61   ASWTEIGNCMGVTKQAAQKRFVPRAEAAALDAEQGFARFTPRARNAVVAAQNAAHGARNA  120

Query  121  EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVL  180
            EITPDHL+LGVL DP ALATALL  Q ID A +   VTLP    EPP  IPFSG ARK L
Sbjct  121  EITPDHLILGVLNDPEALATALLTAQHIDPAAVAATVTLPAGDAEPPALIPFSGTARKAL  180

Query  181  ELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGANA  240
            ELTFR ALRLGHNYIGTEHLLLAL E+EDG GPLHR+GV+  R E DL   LAS+T   A
Sbjct  181  ELTFRTALRLGHNYIGTEHLLLALFEVEDGTGPLHRAGVNPERFETDLAQALASITANTA  240

Query  241  AG  242
            AG
Sbjct  241  AG  242


>gi|108799192|ref|YP_639389.1| Clp, N terminal [Mycobacterium sp. MCS]
 gi|119868307|ref|YP_938259.1| Clp N terminal domain-containing protein [Mycobacterium sp. KMS]
 gi|126434800|ref|YP_001070491.1| Clp N terminal domain-containing protein [Mycobacterium sp. JLS]
 gi|108769611|gb|ABG08333.1| Clp, N terminal [Mycobacterium sp. MCS]
 gi|119694396|gb|ABL91469.1| Clp N terminal domain protein [Mycobacterium sp. KMS]
 gi|126234600|gb|ABN98000.1| Clp N terminal domain protein [Mycobacterium sp. JLS]
Length=240

 Score =  320 bits (820),  Expect = 1e-85, Method: Compositional matrix adjust.
 Identities = 167/234 (72%), Positives = 185/234 (80%), Gaps = 1/234 (0%)

Query  6    PTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGASWSD  65
            P A+PVRLD+LINAIK VH + LDQL+DAVLAAE LGE+ADHLIGHFVDQARRSGASW+D
Sbjct  4    PIAHPVRLDDLINAIKTVHDEPLDQLTDAVLAAEALGEVADHLIGHFVDQARRSGASWTD  63

Query  66   IGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASSEITPD  125
            IGK MGVTKQAAQKRFVP+A+   LD NQGF RFTPRAR AVV AQN A  A  SEITPD
Sbjct  64   IGKCMGVTKQAAQKRFVPKADTEPLDPNQGFARFTPRARAAVVHAQNTAREARHSEITPD  123

Query  126  HLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPP-QPIPFSGPARKVLELTF  184
            HLLLG+L D  +L  ALL  Q +    +R AV L P+   P    +PFSGPA+KVLELTF
Sbjct  124  HLLLGLLVDTESLGVALLTAQGVAPQDVRAAVALTPSADGPALDLVPFSGPAKKVLELTF  183

Query  185  REALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGA  238
            REALRLGHNYIGTEHLLLALLE ED DGPL R GVD+ RA+ DLI  L S+TGA
Sbjct  184  REALRLGHNYIGTEHLLLALLESEDTDGPLSRLGVDRQRAQTDLIGLLDSITGA  237


>gi|158315876|ref|YP_001508384.1| Clp domain-containing protein [Frankia sp. EAN1pec]
 gi|158111281|gb|ABW13478.1| Clp domain protein [Frankia sp. EAN1pec]
Length=257

 Score =  317 bits (812),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 158/252 (63%), Positives = 192/252 (77%), Gaps = 4/252 (1%)

Query  2    PEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGA  61
            P P P + PVRLD+LI AIK+ HSD LDQL+DAV+ A+HLGE+ADHLIGHFVDQARRSGA
Sbjct  4    PSPVPISNPVRLDDLIAAIKKAHSDALDQLTDAVMVADHLGEVADHLIGHFVDQARRSGA  63

Query  62   SWSDIGKSMGVTKQAAQKRFVPR--AEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAAS  119
            SW++IG SMGVTKQAAQKRFVP+   E ++LD +QGF R+TPRARN++VAAQN    A +
Sbjct  64   SWTEIGASMGVTKQAAQKRFVPKGPGEPSSLDPSQGFGRYTPRARNSIVAAQNETRAAGN  123

Query  120  SEITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVT--LPPAVTEPPQPIPFSGPAR  177
            +EITP HL+LG+L DP  L  A +  QE+ +  +R AVT  LPP V + P  IPF GP++
Sbjct  124  AEITPGHLILGLLADPQGLGPAAIAAQEVSLDAVRQAVTAALPPRVDDLPALIPFDGPSK  183

Query  178  KVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTG  237
            K LELTFREALRLGHNY+GTEH+LLALLELEDG GPL   GVDK+  E  L   L+ +T 
Sbjct  184  KALELTFREALRLGHNYVGTEHILLALLELEDGTGPLTALGVDKATVETYLAEALSLITA  243

Query  238  ANAAGATDAGAT  249
              A G  D+GA+
Sbjct  244  GRATGGQDSGAS  255


>gi|226308784|ref|YP_002768744.1| hypothetical protein RER_52970 [Rhodococcus erythropolis PR4]
 gi|226187901|dbj|BAH36005.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length=242

 Score =  295 bits (754),  Expect = 5e-78, Method: Compositional matrix adjust.
 Identities = 145/239 (61%), Positives = 186/239 (78%), Gaps = 4/239 (1%)

Query  1    MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG  60
            M +P      VRLD+LI+AIK+VH+D LDQLSDAV+AA+HLGE+ADHLIGHFVDQARRSG
Sbjct  1    MSKPVEMTNKVRLDDLIDAIKKVHTDALDQLSDAVIAADHLGEVADHLIGHFVDQARRSG  60

Query  61   ASWSDIGKSMGVTKQAAQKRFVPR--AEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAA  118
            ASW++IG SMGV+KQAAQKRFVP+  ++   +D N+GF RFTPRA+N V+A+QN A  A 
Sbjct  61   ASWTEIGASMGVSKQAAQKRFVPKVPSDQKPMDPNEGFNRFTPRAKNVVMASQNEARAAG  120

Query  119  SSEITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAV--TLPPAVTEPPQPIPFSGPA  176
            ++EI P+HLLLG++ +PA LA   +  Q +++ ++R AV   LP   +E P+ IP+   A
Sbjct  121  NAEIQPEHLLLGLVEEPAGLAAKAIVAQGVELRSVRAAVAGVLPAPTSELPELIPYDARA  180

Query  177  RKVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASL  235
            RKVLELTFREALRLGHNYIGTEH+LLALLELEDG G L   G+ KS AE++++  LA +
Sbjct  181  RKVLELTFREALRLGHNYIGTEHILLALLELEDGSGVLADLGISKSVAESNIVGALAVI  239


>gi|118467977|ref|YP_887123.1| Clp amino terminal domain-containing protein [Mycobacterium smegmatis 
str. MC2 155]
 gi|118169264|gb|ABK70160.1| Clp amino terminal domain protein [Mycobacterium smegmatis str. 
MC2 155]
Length=244

 Score =  294 bits (753),  Expect = 8e-78, Method: Compositional matrix adjust.
 Identities = 150/235 (64%), Positives = 176/235 (75%), Gaps = 3/235 (1%)

Query  1    MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG  60
            M E      PVRLD+LI+ IK  H++ L+QL+DAV+AA+ LGEIADHLIGHFVDQARRSG
Sbjct  1    MVEHAKITNPVRLDDLIDGIKHAHTEPLEQLTDAVIAADALGEIADHLIGHFVDQARRSG  60

Query  61   ASWSDIGKSMGVTKQAAQKRFVPRA---EATTLDSNQGFRRFTPRARNAVVAAQNAAHGA  117
            ASW++IGK MGVTKQAAQKRFVP+    + T L+  +GF RFTPRARN +V A N AH A
Sbjct  61   ASWTEIGKCMGVTKQAAQKRFVPKVPDFDPTALNPEEGFGRFTPRARNVIVVAHNLAHDA  120

Query  118  ASSEITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPAR  177
             ++EITPDHLLLG+  D   LA  LL  Q +D   +R AVTLPP+  E    IPF   A+
Sbjct  121  RNAEITPDHLLLGLFADTEGLAAKLLAGQGVDADAVRAAVTLPPSTGEAAALIPFDTAAK  180

Query  178  KVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTL  232
            K LELTFR+ALRLGHNYIGTEH+LLAL++ EDGDGPLHR GVD  R EADL T L
Sbjct  181  KALELTFRQALRLGHNYIGTEHILLALVDAEDGDGPLHRLGVDAERFEADLRTAL  235


>gi|229488961|ref|ZP_04382827.1| Clp amino domain protein [Rhodococcus erythropolis SK121]
 gi|229324465|gb|EEN90220.1| Clp amino domain protein [Rhodococcus erythropolis SK121]
Length=238

 Score =  293 bits (749),  Expect = 2e-77, Method: Compositional matrix adjust.
 Identities = 144/229 (63%), Positives = 183/229 (80%), Gaps = 4/229 (1%)

Query  11   VRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGASWSDIGKSM  70
            VRLD+LI+AIK+VH+D LDQLSDAV+AA+HLGE+ADHLIGHFVDQARRSGASW++IG SM
Sbjct  7    VRLDDLIDAIKKVHTDALDQLSDAVIAADHLGEVADHLIGHFVDQARRSGASWTEIGASM  66

Query  71   GVTKQAAQKRFVPRA--EATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASSEITPDHLL  128
            GV+KQAAQKRFVP+A  +   +D N+GF RFTPRA+N V+A+QN A  A ++EI P+HLL
Sbjct  67   GVSKQAAQKRFVPKAPSDQKPMDPNEGFNRFTPRAKNVVMASQNEARAAGNAEIQPEHLL  126

Query  129  LGVLTDPAALATALLQQQEIDIATLRTAV--TLPPAVTEPPQPIPFSGPARKVLELTFRE  186
            LG++ +PA LA   +  Q +++ ++R AV   LP   +E P+ IP+   ARKVLELTFRE
Sbjct  127  LGLVEEPAGLAAKAIVAQGVELGSVRAAVAGVLPTPTSELPELIPYDARARKVLELTFRE  186

Query  187  ALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASL  235
            ALRLGHNYIGTEH+LLALLELEDG G L   G+ KS AE++++  LA +
Sbjct  187  ALRLGHNYIGTEHILLALLELEDGSGVLADLGISKSVAESNIVGALAVI  235


>gi|226359789|ref|YP_002777567.1| hypothetical protein ROP_03750 [Rhodococcus opacus B4]
 gi|226238274|dbj|BAH48622.1| hypothetical protein [Rhodococcus opacus B4]
Length=247

 Score =  290 bits (742),  Expect = 1e-76, Method: Compositional matrix adjust.
 Identities = 151/233 (65%), Positives = 179/233 (77%), Gaps = 5/233 (2%)

Query  1    MPEPTPTAYPVRLDELINAIKRVHSDV-LDQLSDAVLAAEHLGEIADHLIGHFVDQARRS  59
            M   TP   P+RLD+LI AIK+ H++  L+QL+DAVLAAEHLG++ADHLIGHFVDQARRS
Sbjct  1    MENSTPVTPPIRLDDLIEAIKKGHAEAPLEQLTDAVLAAEHLGDLADHLIGHFVDQARRS  60

Query  60   GASWSDIGKSMGVTKQAAQKRFVPR--AEATTLDSNQGFRRFTPRARNAVVAAQNAAHGA  117
            GASW++IGKSMGVTKQAAQKRFVP+   +A+ LD NQGF RFTPRAR  VV AQN A  A
Sbjct  61   GASWTEIGKSMGVTKQAAQKRFVPKDPGQASDLDPNQGFSRFTPRARQVVVVAQNEARAA  120

Query  118  ASSEITPDHLLLGVLTDPAALATALLQQQEIDIATLRTA--VTLPPAVTEPPQPIPFSGP  175
            ++SEI P HL+LG+LTDP  L    +  Q +D+ T+R A   TLPPAV E P  IPF   
Sbjct  121  SNSEILPQHLVLGLLTDPDGLGARAIAAQGVDLDTVRHAATATLPPAVEEIPALIPFDAQ  180

Query  176  ARKVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADL  228
            +RK LELTFREALRLGHNYIGTEH+LLALLE+EDG G L   GVDK+  E ++
Sbjct  181  SRKALELTFREALRLGHNYIGTEHILLALLEVEDGVGVLAGLGVDKAAVEENI  233


>gi|312141795|ref|YP_004009131.1| hypothetical protein REQ_44920 [Rhodococcus equi 103S]
 gi|325672947|ref|ZP_08152641.1| ATP-dependent Clp protease ATP-binding subunit [Rhodococcus equi 
ATCC 33707]
 gi|311891134|emb|CBH50453.1| conserved hypothetical protein [Rhodococcus equi 103S]
 gi|325556200|gb|EGD25868.1| ATP-dependent Clp protease ATP-binding subunit [Rhodococcus equi 
ATCC 33707]
Length=241

 Score =  283 bits (725),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 150/233 (65%), Positives = 174/233 (75%), Gaps = 8/233 (3%)

Query  10   PVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGASWSDIGKS  69
            PVRLD+LI AIK+VHSD L+QL+DAVLAAEHL E+ADHLIGHFVDQARRSGASW+DIG+S
Sbjct  4    PVRLDDLIEAIKKVHSDALEQLTDAVLAAEHLDEVADHLIGHFVDQARRSGASWTDIGRS  63

Query  70   MGVTKQAAQKRFVPRA--EATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASSEITPDHL  127
            MGVTKQAAQKRFVP+   E + LD++QGF RFTPRARN V+AAQN A  A + +ITP+H+
Sbjct  64   MGVTKQAAQKRFVPKGPEEPSDLDASQGFSRFTPRARNVVMAAQNEARAAGNDQITPEHV  123

Query  128  LLGVLTDPAALATALLQQQEID--IATLRTAVTLPPAVTEPPQPIPFSGPARKVLELTFR  185
            +LG+L++P +LA   L  Q+ID           LP    E P  IPF   ARK LELTFR
Sbjct  124  VLGLLSEPESLAVKALAAQDIDAEAVRAAATAVLPARADEVPDLIPFDAGARKALELTFR  183

Query  186  EALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDK----SRAEADLITTLAS  234
            EALRLGHNYIGTEH+LLALLELED  G L   GV+K    S  EA L T L S
Sbjct  184  EALRLGHNYIGTEHILLALLELEDRAGVLAELGVEKAAVDSYVEAVLATILES  236


>gi|345015376|ref|YP_004817730.1| Clp domain-containing protein [Streptomyces violaceusniger Tu 
4113]
 gi|344041725|gb|AEM87450.1| Clp domain protein [Streptomyces violaceusniger Tu 4113]
Length=249

 Score =  281 bits (718),  Expect = 8e-74, Method: Compositional matrix adjust.
 Identities = 149/242 (62%), Positives = 184/242 (77%), Gaps = 4/242 (1%)

Query  1    MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG  60
            M +P   ++PVRLD+LI AIK+VH+D L+QL+DAV+AAEHL E+ADHLIGHFVDQARRSG
Sbjct  1    MTKPVGLSHPVRLDDLIEAIKKVHTDALEQLTDAVIAAEHLDEVADHLIGHFVDQARRSG  60

Query  61   ASWSDIGKSMGVTKQAAQKRFVPRA--EATTLDSNQGFRRFTPRARNAVVAAQNAAHGAA  118
            ASW+DIGKSMGVT+QAAQKRFVP+A  E + LD NQGF R+TPRARN V+AA N A  A+
Sbjct  61   ASWTDIGKSMGVTRQAAQKRFVPKAPGEPSDLDPNQGFSRYTPRARNTVMAAANEARAAS  120

Query  119  SSEITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVT--LPPAVTEPPQPIPFSGPA  176
            + E+ P+HL+LG+L +P  LA   +  Q + + T+R A T  LPPA  E P+ IP+   A
Sbjct  121  NGEVRPEHLVLGLLQEPEGLAAKAILAQGVLLDTVRQAATEALPPAAEEVPELIPYDAGA  180

Query  177  RKVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLT  236
            RKVLELTFREALRLGHNYIGTEH+LLALLE EDG G L   G+DK+ A  ++   L  + 
Sbjct  181  RKVLELTFREALRLGHNYIGTEHILLALLEHEDGAGLLTGLGIDKATAVDNITQALTRIA  240

Query  237  GA  238
             A
Sbjct  241  EA  242


>gi|288919577|ref|ZP_06413906.1| Clp domain protein [Frankia sp. EUN1f]
 gi|288348975|gb|EFC83223.1| Clp domain protein [Frankia sp. EUN1f]
Length=259

 Score =  278 bits (712),  Expect = 4e-73, Method: Compositional matrix adjust.
 Identities = 152/246 (62%), Positives = 179/246 (73%), Gaps = 4/246 (1%)

Query  3    EPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGAS  62
            +PT  +  VRLD+LI AIK+ H+D L+QLS AVL A+HLG++ADHLIGHFVDQARRSGAS
Sbjct  5    DPTALSNSVRLDDLIAAIKKTHADALEQLSGAVLVADHLGDVADHLIGHFVDQARRSGAS  64

Query  63   WSDIGKSMGVTKQAAQKRFVPR--AEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS  120
            W++IG+SMGVTKQAAQKRFVP+   E  +LD  QGF R+T RARNAVVAAQN A  A ++
Sbjct  65   WTEIGRSMGVTKQAAQKRFVPKEPGEPESLDPAQGFGRYTQRARNAVVAAQNEARAAGNA  124

Query  121  EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVT--LPPAVTEPPQPIPFSGPARK  178
            EIT +HLLLG+L DPA L  A +  Q   +A +R A T  L P V E P  IPF G A+K
Sbjct  125  EITAEHLLLGLLADPAGLGAAAIVAQGAPLAAVREAATANLAPPVAEVPDLIPFDGRAKK  184

Query  179  VLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGA  238
             LELTFREALRL H+Y+GTEH+LLALLELEDG GPL   GV K  AE  L   LA     
Sbjct  185  ALELTFREALRLDHSYVGTEHILLALLELEDGAGPLTSLGVTKPGAETHLRQLLALAVSG  244

Query  239  NAAGAT  244
             +A AT
Sbjct  245  PSATAT  250


>gi|324998388|ref|ZP_08119500.1| Clp domain-containing protein [Pseudonocardia sp. P1]
Length=245

 Score =  277 bits (709),  Expect = 9e-73, Method: Compositional matrix adjust.
 Identities = 145/244 (60%), Positives = 177/244 (73%), Gaps = 3/244 (1%)

Query  1    MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG  60
            M  P+P    VRLD+LI+AI  VHSD L+QLS AVLA +HLG++ADHLIGHFVD+ARRSG
Sbjct  1    MTTPSPVTGTVRLDDLISAITDVHSDPLEQLSGAVLAGDHLGDLADHLIGHFVDRARRSG  60

Query  61   ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS  120
            ASW+DIG+SMGV+KQAAQKRFVP+ +   +D  +GF+RFTPRAR  VVAAQ+ A  A + 
Sbjct  61   ASWTDIGRSMGVSKQAAQKRFVPKPD-EPVDPEEGFKRFTPRARGVVVAAQSEARSAGND  119

Query  121  EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVT--LPPAVTEPPQPIPFSGPARK  178
             ITP HL+LG+  DP ALA  LL+ Q +    LR A    LP  V + P  +PF G A+K
Sbjct  120  RITPAHLVLGLAADPQALAVVLLEPQGVTPDALREAAVARLPERVEQVPDLVPFDGAAKK  179

Query  179  VLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGA  238
             LELTFR+ALRLGHNY+GTEH+LLALLE EDGDG L   GVD  RAEA ++  LA++   
Sbjct  180  ALELTFRQALRLGHNYVGTEHILLALLEQEDGDGVLSGLGVDGPRAEAAIVKALAAIAAQ  239

Query  239  NAAG  242
               G
Sbjct  240  QEQG  243


>gi|302545190|ref|ZP_07297532.1| Clp amino domain protein [Streptomyces hygroscopicus ATCC 53653]
 gi|302462808|gb|EFL25901.1| Clp amino domain protein [Streptomyces himastatinicus ATCC 53653]
Length=253

 Score =  277 bits (709),  Expect = 9e-73, Method: Compositional matrix adjust.
 Identities = 137/236 (59%), Positives = 176/236 (75%), Gaps = 3/236 (1%)

Query  3    EPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGAS  62
            +P    + VRLD+LI AIK+ H+D L+QL+DAV+AA+HLG++ADHLIGHFVDQARRSGAS
Sbjct  9    QPVDMTHSVRLDDLIEAIKKTHTDALEQLTDAVIAADHLGDVADHLIGHFVDQARRSGAS  68

Query  63   WSDIGKSMGVTKQAAQKRFVPRAEATT-LDSNQGFRRFTPRARNAVVAAQNAAHGAASSE  121
            W+DIGKSMGVT+QAAQKRFVP+  A   LD +QGF R+TPRARN VV++QN A  A ++E
Sbjct  69   WTDIGKSMGVTRQAAQKRFVPKGSAAQDLDPSQGFGRYTPRARNVVVSSQNEARAANNAE  128

Query  122  ITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVT--LPPAVTEPPQPIPFSGPARKV  179
            I  +HL+LG+L +P  +    +  Q++ + T+R A T  LPPAV   P  +PF   A+KV
Sbjct  129  IRTEHLVLGLLAEPEGVGAKAITAQDVLLDTVRQAATAALPPAVDSMPALVPFDASAKKV  188

Query  180  LELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASL  235
            LELTFREALRLGHNY+GTEH+LLALLE EDG G     G+ K+  EA ++  L  +
Sbjct  189  LELTFREALRLGHNYVGTEHILLALLEHEDGSGLFADLGIAKAGVEASVVRMLEQI  244


>gi|294630610|ref|ZP_06709170.1| Clp amino domain-containing protein [Streptomyces sp. e14]
 gi|292833943|gb|EFF92292.1| Clp amino domain-containing protein [Streptomyces sp. e14]
Length=288

 Score =  276 bits (707),  Expect = 2e-72, Method: Compositional matrix adjust.
 Identities = 146/238 (62%), Positives = 182/238 (77%), Gaps = 4/238 (1%)

Query  1    MPEPTPTAYP-VRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRS  59
            M  P P     VRLD+LI+AIK+VH + L+QL DAVLA EHLGE+ADHLIGHFVDQARRS
Sbjct  1    MTNPNPAIRSSVRLDDLISAIKKVHQEPLEQLQDAVLAGEHLGEVADHLIGHFVDQARRS  60

Query  60   GASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAAS  119
            GASW+DIG+SMGVT+QAAQKRFVP+ E+  LD +QGF R+TPRAR  ++AA +AA  A +
Sbjct  61   GASWTDIGRSMGVTRQAAQKRFVPK-ESNDLDPSQGFSRYTPRARKVLMAAHDAAKAARN  119

Query  120  SEITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVT--LPPAVTEPPQPIPFSGPAR  177
            +E  P HL+LG+LT+P ALA   +Q Q + + T+R A T  LPPAV + P+ +P+   A+
Sbjct  120  AEGLPAHLILGLLTEPEALAAKAVQHQGVPLETIREAATAALPPAVADAPELVPYGPAAK  179

Query  178  KVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASL  235
            K LELTFREALRLGHNYIGTEH+LLALLELE+G+G L   G+ K R E  ++TTLA  
Sbjct  180  KALELTFREALRLGHNYIGTEHMLLALLELENGEGVLSGLGIGKDRTEEFVVTTLAEF  237


>gi|120403486|ref|YP_953315.1| Clp N terminal domain-containing protein [Mycobacterium vanbaalenii 
PYR-1]
 gi|119956304|gb|ABM13309.1| Clp N terminal domain protein [Mycobacterium vanbaalenii PYR-1]
Length=239

 Score =  276 bits (705),  Expect = 3e-72, Method: Compositional matrix adjust.
 Identities = 141/235 (60%), Positives = 171/235 (73%), Gaps = 2/235 (0%)

Query  5    TPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGASWS  64
            +  ++PVRLD+LI+ IK+VH + L+QL+DAVLAAE LGE+ADHLIGHFVDQARRSGASW+
Sbjct  4    SKISHPVRLDDLIDVIKQVHDEPLEQLTDAVLAAEALGEVADHLIGHFVDQARRSGASWT  63

Query  65   DIGKSMGVTKQAAQKRFVPRAEATT--LDSNQGFRRFTPRARNAVVAAQNAAHGAASSEI  122
            +IGK MGVTKQAAQKRFVP+    T  LD + GF RFTPRAR  +V AQN AH A + EI
Sbjct  64   EIGKCMGVTKQAAQKRFVPKTPTDTGALDPDAGFSRFTPRARAVIVEAQNKAHDAGNPEI  123

Query  123  TPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVLEL  182
             P HL+LG+  DP  LA  L+  Q +D+A +   +TLP  V   P  IPF   A+K LEL
Sbjct  124  LPAHLILGMFADPTGLAARLVAGQGVDLAAVADHITLPARVDGVPALIPFDTRAKKALEL  183

Query  183  TFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTG  237
            TFR+ALRLGHNY+GTEHLLLAL E ED DG LH  G+D  R E +L   L + +G
Sbjct  184  TFRQALRLGHNYVGTEHLLLALYEEEDDDGVLHGLGIDFDRFERELREALEAFSG  238


>gi|297159744|gb|ADI09456.1| hypothetical protein SBI_06336 [Streptomyces bingchenggensis 
BCW-1]
Length=240

 Score =  275 bits (704),  Expect = 3e-72, Method: Compositional matrix adjust.
 Identities = 144/235 (62%), Positives = 177/235 (76%), Gaps = 4/235 (1%)

Query  10   PVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGASWSDIGKS  69
            PVRLD+LI AIK+VHS  LDQLSDAV+AA+HLG++ADHLIGHFVDQARRSGASWS+IG+S
Sbjct  4    PVRLDDLIEAIKKVHSQPLDQLSDAVIAADHLGDVADHLIGHFVDQARRSGASWSEIGQS  63

Query  70   MGVTKQAAQKRFVPR--AEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASSEITPDHL  127
            MGVT+QAAQKRFVP+   E + LD NQ F R+TPRA+N V+AA N A  A + EI P+HL
Sbjct  64   MGVTRQAAQKRFVPKDPGELSALDPNQSFGRYTPRAKNVVMAAMNEAQAARNPEIRPEHL  123

Query  128  LLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVT--EPPQPIPFSGPARKVLELTFR  185
            +LG+L+ P ALA   +  Q++ + T+R A T        E P+ +P+   +RKVLELTFR
Sbjct  124  MLGLLSQPGALAAKAIIAQDVLLDTVRQAATAALPPAADEVPELVPYDAASRKVLELTFR  183

Query  186  EALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGANA  240
            EALRLGHNYIGTEH+LLALLE EDG G L   G+DK  AEA L   LA++  A +
Sbjct  184  EALRLGHNYIGTEHILLALLEYEDGTGVLAGLGIDKPAAEAHLAQELAAILKAKS  238


>gi|145224488|ref|YP_001135166.1| Clp N terminal domain-containing protein [Mycobacterium gilvum 
PYR-GCK]
 gi|145216974|gb|ABP46378.1| Clp N terminal domain protein [Mycobacterium gilvum PYR-GCK]
Length=240

 Score =  273 bits (699),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 143/239 (60%), Positives = 167/239 (70%), Gaps = 2/239 (0%)

Query  1    MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG  60
            M +    + PVRLD+LI  I RVH + LDQL+DAVLAAE L ++ADHLIGHFVDQARRSG
Sbjct  1    MSDAAKISRPVRLDDLIEVITRVHDEPLDQLTDAVLAAEALDDVADHLIGHFVDQARRSG  60

Query  61   ASWSDIGKSMGVTKQAAQKRFVPRAEATT--LDSNQGFRRFTPRARNAVVAAQNAAHGAA  118
            ASW++IGK MGVTKQAAQKRFVP+    T  LD + GF RFT RAR AVV AQN AH A 
Sbjct  61   ASWTEIGKCMGVTKQAAQKRFVPKTPTDTAALDPDAGFSRFTERARAAVVHAQNEAHAAG  120

Query  119  SSEITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARK  178
            + EI P HL+LG+ +DP+ LA  L+  Q I +  +R  + LP    + P  +PF G A+K
Sbjct  121  NGEIAPAHLVLGLFSDPSGLAAQLVAAQGIALDGIRDRIVLPARSEDVPALVPFDGRAKK  180

Query  179  VLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTG  237
             LELTFR ALRLGHNYIGTEHLLLAL E ED DG LH  G+D  R E DL   L  L G
Sbjct  181  ALELTFRHALRLGHNYIGTEHLLLALYEEEDADGVLHGVGIDAERFERDLRQALDGLPG  239


>gi|315444819|ref|YP_004077698.1| Clp amino terminal domain-containing protein [Mycobacterium sp. 
Spyr1]
 gi|315263122|gb|ADT99863.1| Clp amino terminal domain-containing protein [Mycobacterium sp. 
Spyr1]
Length=240

 Score =  273 bits (698),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 143/239 (60%), Positives = 167/239 (70%), Gaps = 2/239 (0%)

Query  1    MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG  60
            M +    + PVRLD+LI  I RVH + LDQL+DAVLAAE L ++ADHLIGHFVDQARRSG
Sbjct  1    MSDAAKISRPVRLDDLIEVITRVHDEPLDQLTDAVLAAEALDDVADHLIGHFVDQARRSG  60

Query  61   ASWSDIGKSMGVTKQAAQKRFVPRAEATT--LDSNQGFRRFTPRARNAVVAAQNAAHGAA  118
            ASW++IGK MGVTKQAAQKRFVP+    T  LD + GF RFT RAR AVV AQN AH A 
Sbjct  61   ASWTEIGKCMGVTKQAAQKRFVPKTPTDTAALDPDAGFSRFTERARAAVVHAQNEAHAAG  120

Query  119  SSEITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARK  178
            + EI P HL+LG+ +DP+ LA  L+  Q I +  +R  + LP    + P  +PF G A+K
Sbjct  121  NGEIAPAHLVLGLFSDPSGLAAQLVAAQGIALDGIRDRIVLPARSEDVPALVPFDGRAKK  180

Query  179  VLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTG  237
             LELTFR ALRLGHNYIGTEHLLLAL E ED DG LH  G+D  R E DL   L  L G
Sbjct  181  ALELTFRHALRLGHNYIGTEHLLLALYEEEDADGVLHGLGIDAERFERDLRQALDGLPG  239


>gi|159036935|ref|YP_001536188.1| Clp domain-containing protein [Salinispora arenicola CNS-205]
 gi|157915770|gb|ABV97197.1| Clp domain protein [Salinispora arenicola CNS-205]
Length=243

 Score =  273 bits (698),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 144/239 (61%), Positives = 174/239 (73%), Gaps = 3/239 (1%)

Query  1    MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG  60
            M EP    +PVRLDELI+ IK+ H++ LDQL+DAVLA +HLGE+ADHLIGHFVDQARRSG
Sbjct  1    MTEPLTMTHPVRLDELIDHIKQAHTNALDQLADAVLAGDHLGEVADHLIGHFVDQARRSG  60

Query  61   ASWSDIGKSMGVTKQAAQKRFVPRAE-ATTLDSNQGFRRFTPRARNAVVAAQNAAHGAAS  119
            ASW++IG+SMGV+KQAAQKR   + E A  L S  GF RFT RARN VVA+Q  A  A +
Sbjct  61   ASWTEIGRSMGVSKQAAQKRSAAKVETAAALGSEAGFGRFTTRARNVVVASQEEARAAGN  120

Query  120  SEITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAV--TLPPAVTEPPQPIPFSGPAR  177
             EI P HL LG+L D  ALA  L++ + I + +LR AV  TLP  V + P  IP+    +
Sbjct  121  VEIGPGHLALGLLVDLDALAPQLIKARGISLDSLREAVTATLPSRVEQVPDLIPYDARGK  180

Query  178  KVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLT  236
            KVLELTFREALRLGHNYIGTEH+LLAL+E EDGDG L   G++K   EA +   LA+LT
Sbjct  181  KVLELTFREALRLGHNYIGTEHILLALIEEEDGDGVLTGLGLEKKDVEAAVQGALAALT  239


>gi|291448795|ref|ZP_06588185.1| clp domain-containing protein [Streptomyces roseosporus NRRL 
15998]
 gi|291351742|gb|EFE78646.1| clp domain-containing protein [Streptomyces roseosporus NRRL 
15998]
Length=255

 Score =  272 bits (696),  Expect = 3e-71, Method: Compositional matrix adjust.
 Identities = 142/242 (59%), Positives = 173/242 (72%), Gaps = 4/242 (1%)

Query  1    MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG  60
            M +P P    VRLD+LI AIK+ + D L+QLS AVLAA+HLG++ADHLIGHFVDQARRSG
Sbjct  8    MTQPLPVTPSVRLDDLIEAIKKTNDDALEQLSGAVLAADHLGDVADHLIGHFVDQARRSG  67

Query  61   ASWSDIGKSMGVTKQAAQKRFVPRA--EATTLDSNQGFRRFTPRARNAVVAAQNAAHGAA  118
            ASW+DIG+SMGVT+QAAQKRFVP+    ++ LD N+GF RFTPRARN VVA+ N A  A 
Sbjct  68   ASWTDIGRSMGVTRQAAQKRFVPKKGESSSDLDPNEGFNRFTPRARNVVVASHNEAQAAR  127

Query  119  SSEITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVT--LPPAVTEPPQPIPFSGPA  176
             +EI P HL+LG+L +P A+A  +L  Q +    LR A T  L   V E P+ IP+   A
Sbjct  128  HAEIVPAHLILGLLAEPEAIAARVLVGQGVRPDALRAAATAVLSAPVDEAPELIPYDADA  187

Query  177  RKVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLT  236
            +KVLELTFREALRLGHNY+GTEH+LLALLE EDG G L   G+DK    A +   +    
Sbjct  188  KKVLELTFREALRLGHNYVGTEHILLALLEFEDGSGVLTGLGLDKEAVSAAVERAVGEAA  247

Query  237  GA  238
            GA
Sbjct  248  GA  249


>gi|239991790|ref|ZP_04712454.1| putative ClpX protein [Streptomyces roseosporus NRRL 11379]
Length=248

 Score =  272 bits (695),  Expect = 4e-71, Method: Compositional matrix adjust.
 Identities = 142/242 (59%), Positives = 173/242 (72%), Gaps = 4/242 (1%)

Query  1    MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG  60
            M +P P    VRLD+LI AIK+ + D L+QLS AVLAA+HLG++ADHLIGHFVDQARRSG
Sbjct  1    MTQPLPVTPSVRLDDLIEAIKKTNDDALEQLSGAVLAADHLGDVADHLIGHFVDQARRSG  60

Query  61   ASWSDIGKSMGVTKQAAQKRFVPRA--EATTLDSNQGFRRFTPRARNAVVAAQNAAHGAA  118
            ASW+DIG+SMGVT+QAAQKRFVP+    ++ LD N+GF RFTPRARN VVA+ N A  A 
Sbjct  61   ASWTDIGRSMGVTRQAAQKRFVPKKGESSSDLDPNEGFNRFTPRARNVVVASHNEAQAAR  120

Query  119  SSEITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVT--LPPAVTEPPQPIPFSGPA  176
             +EI P HL+LG+L +P A+A  +L  Q +    LR A T  L   V E P+ IP+   A
Sbjct  121  HAEIVPAHLILGLLAEPEAIAARVLVGQGVRPDALRAAATAVLSAPVDEAPELIPYDADA  180

Query  177  RKVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLT  236
            +KVLELTFREALRLGHNY+GTEH+LLALLE EDG G L   G+DK    A +   +    
Sbjct  181  KKVLELTFREALRLGHNYVGTEHILLALLEFEDGSGVLTGLGLDKEAVSAAVERAVGEAA  240

Query  237  GA  238
            GA
Sbjct  241  GA  242


>gi|302553134|ref|ZP_07305476.1| ATP-dependent Clp protease ATP-binding subunit [Streptomyces 
viridochromogenes DSM 40736]
 gi|302470752|gb|EFL33845.1| ATP-dependent Clp protease ATP-binding subunit [Streptomyces 
viridochromogenes DSM 40736]
Length=247

 Score =  271 bits (692),  Expect = 8e-71, Method: Compositional matrix adjust.
 Identities = 141/231 (62%), Positives = 177/231 (77%), Gaps = 3/231 (1%)

Query  11   VRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGASWSDIGKSM  70
            VRLD+LI AIK+VH + L+QL DAV+AA+HLGE+ADHLIGHFVDQARRSGASW+DIGKSM
Sbjct  11   VRLDDLIAAIKKVHQEPLEQLQDAVIAADHLGEVADHLIGHFVDQARRSGASWTDIGKSM  70

Query  71   GVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASSEITPDHLLLG  130
            GVT+QAAQKRFVP+ E+  LD +QGF R+TPRARN V+A+ NAA  A ++E  P+HL+LG
Sbjct  71   GVTRQAAQKRFVPK-ESADLDPSQGFNRYTPRARNTVMASHNAAKAAHNAEGLPEHLVLG  129

Query  131  VLTDPAALATALLQQQEIDIATLRTAVT--LPPAVTEPPQPIPFSGPARKVLELTFREAL  188
            +L +P  LA   + +Q + + ++R A T  LPPAV E P+ +P+   A+KVLELTFREAL
Sbjct  130  LLAEPEGLAAKAIVEQGVSLDSVREAATAALPPAVDEAPELVPYGQAAKKVLELTFREAL  189

Query  189  RLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGAN  239
            RLGHNYIGTEH+LLALLE E+G+G L   G+ K R E  L   L  +  A 
Sbjct  190  RLGHNYIGTEHILLALLEHENGEGVLSGLGIGKERTEQYLARVLEKIAEAQ  240


>gi|258655270|ref|YP_003204426.1| Clp domain-containing protein [Nakamurella multipartita DSM 44233]
 gi|258558495|gb|ACV81437.1| Clp domain protein [Nakamurella multipartita DSM 44233]
Length=237

 Score =  270 bits (691),  Expect = 1e-70, Method: Compositional matrix adjust.
 Identities = 140/228 (62%), Positives = 167/228 (74%), Gaps = 4/228 (1%)

Query  12   RLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGASWSDIGKSMG  71
            RLD+LINAI  VH+D L+QL+DAVLAA+HLG +ADHLIGHFVDQARRSGASW+ IG SMG
Sbjct  12   RLDDLINAITAVHTDPLEQLTDAVLAADHLGSLADHLIGHFVDQARRSGASWTQIGASMG  71

Query  72   VTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASSEITPDHLLLGV  131
            VTKQAAQKRFVPR  A +LD  QGF  FTPRARN +VAAQ+ +      ++ P+HLLLG+
Sbjct  72   VTKQAAQKRFVPR--APSLDPQQGFEAFTPRARNTIVAAQSESRERGDDQVRPEHLLLGL  129

Query  132  LTDPAALATALLQQQEIDIATLR--TAVTLPPAVTEPPQPIPFSGPARKVLELTFREALR  189
            L++PA LA   L +Q +    +R  T   LP      P PIP+   A+KVL+LTFREALR
Sbjct  130  LSEPAGLAMKALAEQGLSADRIRAATVAVLPAGPGPSPDPIPYDATAQKVLQLTFREALR  189

Query  190  LGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTG  237
            LGHNYIGTEH+LLALLE E G G L   GVD+ R EA L+  L  L+G
Sbjct  190  LGHNYIGTEHVLLALLEFEGGSGVLAGLGVDRERVEASLLAALGGLSG  237


>gi|297201367|ref|ZP_06918764.1| Clp domain-containing protein [Streptomyces sviceus ATCC 29083]
 gi|297147870|gb|EFH28771.1| Clp domain-containing protein [Streptomyces sviceus ATCC 29083]
Length=244

 Score =  270 bits (691),  Expect = 1e-70, Method: Compositional matrix adjust.
 Identities = 140/231 (61%), Positives = 171/231 (75%), Gaps = 3/231 (1%)

Query  11   VRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGASWSDIGKSM  70
            VRLD+LI AIK+VH + LDQL DAV+AA+HLGE+ADHLIGHFVDQARRSGASW+DIG+SM
Sbjct  11   VRLDDLITAIKKVHVEPLDQLQDAVIAADHLGEVADHLIGHFVDQARRSGASWTDIGRSM  70

Query  71   GVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASSEITPDHLLLG  130
            GVT+QAAQKRFVP+ E+  L+++QGF R+T RARN V+AA NAA  A + E  P+HL+LG
Sbjct  71   GVTRQAAQKRFVPK-ESADLNADQGFSRYTTRARNVVMAAHNAAISAGNPEGRPEHLVLG  129

Query  131  VLTDPAALATALLQQQEIDIATLRTAVT--LPPAVTEPPQPIPFSGPARKVLELTFREAL  188
            +L +P  LA   L  Q + +  +R A T  LPPA  E P+ +P+   A+KVLELTFREAL
Sbjct  130  LLAEPEGLAAKALVAQGVTLDAVRRAATDALPPAAEEVPELVPYGSDAKKVLELTFREAL  189

Query  189  RLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGAN  239
            RLGHNYIGTEH+LLALLE E G G L   GV+K   E  +   LA    A 
Sbjct  190  RLGHNYIGTEHILLALLEFEHGTGVLSGLGVEKGPVEGAVAKELAGYLKAQ  240


>gi|328884586|emb|CCA57825.1| putative ClpX protein [Streptomyces venezuelae ATCC 10712]
Length=251

 Score =  269 bits (688),  Expect = 2e-70, Method: Compositional matrix adjust.
 Identities = 143/239 (60%), Positives = 174/239 (73%), Gaps = 3/239 (1%)

Query  1    MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG  60
            M  P   + PVRLDELI AIK+VH D L+QLS AV+AA+HLG++ADHLIGHFVDQARRSG
Sbjct  1    MTNPVGLSVPVRLDELIEAIKKVHPDALEQLSGAVIAADHLGDVADHLIGHFVDQARRSG  60

Query  61   ASWSDIGKSMGVTKQAAQKRFVPRA-EATTLDSNQGFRRFTPRARNAVVAAQNAAHGAAS  119
            ASW+DIG+SMGVT+QAAQKRFVP+  +   +D N GF RFTPRAR  VVA+Q  A  A  
Sbjct  61   ASWTDIGRSMGVTRQAAQKRFVPKGPDDAQMDPNAGFSRFTPRARKVVVASQEEARAAEH  120

Query  120  SEITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAV--TLPPAVTEPPQPIPFSGPAR  177
            +EI P HL+LG+L DP ALA   L    +    +R AV  TLPP   + P  IPF   ++
Sbjct  121  AEIVPGHLVLGLLADPEALAARWLTGHGVTAEAVRDAVTPTLPPRAEKIPALIPFDADSK  180

Query  178  KVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLT  236
            KVLELTFREALRLGHN++GTEH+LLAL+E EDG G L   G+DK+ AE ++   +AS T
Sbjct  181  KVLELTFREALRLGHNFVGTEHILLALMEHEDGTGVLAGLGLDKATAEREIAEAIASAT  239


>gi|111017265|ref|YP_700237.1| ATP-dependent Clp protease ATP-binding subunit [Rhodococcus jostii 
RHA1]
 gi|110816795|gb|ABG92079.1| probable ATP-dependent Clp protease ATP-binding subunit [Rhodococcus 
jostii RHA1]
Length=247

 Score =  267 bits (683),  Expect = 9e-70, Method: Compositional matrix adjust.
 Identities = 145/226 (65%), Positives = 171/226 (76%), Gaps = 5/226 (2%)

Query  1    MPEPTPTAYPVRLDELINAIKRVHSDV-LDQLSDAVLAAEHLGEIADHLIGHFVDQARRS  59
            M     T  P+RLDELI+AIK+VH++  L+QL+DAVLAAEHLGE+ADHLIGHFVDQARRS
Sbjct  1    MENSDRTTPPIRLDELIDAIKKVHAEAPLEQLTDAVLAAEHLGELADHLIGHFVDQARRS  60

Query  60   GASWSDIGKSMGVTKQAAQKRFVPR--AEATTLDSNQGFRRFTPRARNAVVAAQNAAHGA  117
            GASW++IGKSMGVTKQAAQKRFVP+   +A+ LD NQGF RFTPRAR  VV AQN A  A
Sbjct  61   GASWTEIGKSMGVTKQAAQKRFVPKDPGQASDLDPNQGFSRFTPRARQVVVVAQNEARAA  120

Query  118  ASSEITPDHLLLGVLTDPAALATALLQQQEIDIATLR--TAVTLPPAVTEPPQPIPFSGP  175
             ++EI P HL+LG+L DP  L    +  Q + + ++R     TLPPA  E P  +PF   
Sbjct  121  HNAEILPQHLVLGLLADPEGLGARAIAAQGVKLDSVRHAATATLPPAAEEVPALVPFDAQ  180

Query  176  ARKVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDK  221
            +RK LELTFREALRLGHNYIGTEH+LLALLE+EDG G L   GVDK
Sbjct  181  SRKALELTFREALRLGHNYIGTEHILLALLEVEDGVGVLTGLGVDK  226


>gi|290958456|ref|YP_003489638.1| hypothetical protein SCAB_40081 [Streptomyces scabiei 87.22]
 gi|260647982|emb|CBG71087.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length=247

 Score =  264 bits (675),  Expect = 7e-69, Method: Compositional matrix adjust.
 Identities = 146/236 (62%), Positives = 173/236 (74%), Gaps = 3/236 (1%)

Query  11   VRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGASWSDIGKSM  70
            +RLDELI+AIK+VH + LDQL DAV+AA+HLGE+ADHLIGHFVDQARRSGASW++IGKSM
Sbjct  11   IRLDELIDAIKKVHPEPLDQLQDAVIAADHLGEVADHLIGHFVDQARRSGASWTEIGKSM  70

Query  71   GVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASSEITPDHLLLG  130
            GVT+QAAQKRFVP+AE   LD++QGF RFTPRARN V AA N    A + E  P HL+LG
Sbjct  71   GVTRQAAQKRFVPKAE-NDLDASQGFSRFTPRARNVVTAAHNEGKAAGAVEGVPAHLVLG  129

Query  131  VLTDPAALATALLQQQEIDIATLR--TAVTLPPAVTEPPQPIPFSGPARKVLELTFREAL  188
            +L++P ALA   L  Q +    LR     TLPPA  E P+ IP+   A+KVLELTFREAL
Sbjct  130  LLSEPEALAAKALAAQGVSPEVLRQAATATLPPAAPEVPELIPYGPEAKKVLELTFREAL  189

Query  189  RLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGANAAGAT  244
            RLGHNYIGTEH+LLALLE E+G G L   GV K   EAD+   L S+      G +
Sbjct  190  RLGHNYIGTEHILLALLEFENGQGVLSGLGVTKEATEADVTAALRSIVQGKGQGQS  245


>gi|318059348|ref|ZP_07978071.1| Clp domain-containing protein [Streptomyces sp. SA3_actG]
 gi|318077999|ref|ZP_07985331.1| Clp domain-containing protein [Streptomyces sp. SA3_actF]
Length=253

 Score =  263 bits (673),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 141/228 (62%), Positives = 163/228 (72%), Gaps = 5/228 (2%)

Query  1    MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG  60
            M E TP    VRLD+LI+AIKRVH+  LDQL+DAVLAAEHLGE+ADHLIGHFVDQARRSG
Sbjct  1    MTEQTPAHRTVRLDDLIDAIKRVHTGPLDQLTDAVLAAEHLGEVADHLIGHFVDQARRSG  60

Query  61   ASWSDIGKSMGVTKQAAQKRFVPR--AEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAA  118
            ASW+DIG SMGVT+QAAQKRFVP+   E   LD  QGF R+TPRAR  VVA+Q  A    
Sbjct  61   ASWTDIGTSMGVTRQAAQKRFVPKDSGEVAALDPEQGFSRYTPRARKVVVASQTRAREHG  120

Query  119  SSEITPDHLLLGVLTDPAALATALLQQQEI--DIATLRTAVTLPPAVTEP-PQPIPFSGP  175
             + I P HLLLG+L +P +L   +L  Q +  +         LPP   E  P  IPF   
Sbjct  121  HTRIAPAHLLLGLLDEPQSLGVVVLADQGVTREAVREAAEAALPPRGEEDLPTLIPFDAA  180

Query  176  ARKVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSR  223
            A+K+LELTFREALRLGHNYIGTEHL+LALLE E+GDG L   GV+K R
Sbjct  181  AKKILELTFREALRLGHNYIGTEHLVLALLEHENGDGLLAGLGVEKER  228


>gi|257056231|ref|YP_003134063.1| Clp amino terminal domain-containing protein [Saccharomonospora 
viridis DSM 43017]
 gi|256586103|gb|ACU97236.1| Clp amino terminal domain-containing protein [Saccharomonospora 
viridis DSM 43017]
Length=233

 Score =  263 bits (671),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 132/215 (62%), Positives = 164/215 (77%), Gaps = 2/215 (0%)

Query  11   VRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGASWSDIGKSM  70
            +RLD+LI AI++  +DVL+QL+DAVLAAEHLGE+ADHLIGHFVDQARRSGASW++IGKS+
Sbjct  5    IRLDDLIKAIEKSRTDVLEQLADAVLAAEHLGELADHLIGHFVDQARRSGASWTEIGKSL  64

Query  71   GVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASSEITPDHLLLG  130
            GVTKQAAQKRFV    ATTLD ++GFRRFTPRAR  V+AAQ  A  A ++ ITP HL+LG
Sbjct  65   GVTKQAAQKRFVSPGRATTLDPSEGFRRFTPRARKVVMAAQQEARSANNASITPVHLILG  124

Query  131  VLTDPAALATALLQQQEIDIATL--RTAVTLPPAVTEPPQPIPFSGPARKVLELTFREAL  188
            ++ +P  +A   +Q QE+ + T+  R    LP A  E P  IP+   ARKVLELTFR+AL
Sbjct  125  LVGEPEGVAAVAIQAQEVTLDTVRERALAALPKAEEEVPDLIPYDPDARKVLELTFRQAL  184

Query  189  RLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSR  223
            RLGH Y+GTEH+LLAL E E+G G L   G+ K +
Sbjct  185  RLGHEYVGTEHILLALSEHENGKGVLSELGLRKEK  219


>gi|336177887|ref|YP_004583262.1| Clp domain-containing protein [Frankia symbiont of Datisca glomerata]
 gi|334858867|gb|AEH09341.1| Clp domain protein [Frankia symbiont of Datisca glomerata]
Length=245

 Score =  262 bits (670),  Expect = 3e-68, Method: Compositional matrix adjust.
 Identities = 141/245 (58%), Positives = 171/245 (70%), Gaps = 4/245 (1%)

Query  1    MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG  60
            M  P   + P+RLD+LI AIK+VH DVL+QLS AV+AA+ LGE+ADHLIGHFVDQARRSG
Sbjct  1    MANPVTPSVPIRLDDLIQAIKKVHPDVLEQLSSAVVAADRLGELADHLIGHFVDQARRSG  60

Query  61   ASWSDIGKSMGVTKQAAQKRFVPRA-EATTLDSNQGFRRFTPRARNAVVAAQNAAHGAAS  119
            ASW++IG+SMGV+KQAAQKR   ++ EA  LD +QGF RFTPRARN V+AAQN A  +  
Sbjct  61   ASWTEIGRSMGVSKQAAQKRSAKKSDEAADLDPSQGFGRFTPRARNVVMAAQNEAQRSGH  120

Query  120  SEITPDHLLLGVLTDPAALATALLQ---QQEIDIATLRTAVTLPPAVTEPPQPIPFSGPA  176
             EI P+HL+LG+L DP ALA  +LQ        +     A    P     P  +PF   A
Sbjct  121  HEIRPEHLILGLLVDPQALAVTILQVLGAGAEAVRAAAAAALPAPPGGAAPALVPFDTAA  180

Query  177  RKVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLT  236
            +K LELTFREALRLGHNY+GTEH+LLALLE EDGDG L   GVD++  E  L T LA++ 
Sbjct  181  KKALELTFREALRLGHNYVGTEHILLALLEREDGDGVLSGLGVDRAAVETQLATALAAIV  240

Query  237  GANAA  241
                A
Sbjct  241  AGGKA  245


>gi|333022575|ref|ZP_08450639.1| hypothetical protein STTU_0079 [Streptomyces sp. Tu6071]
 gi|332742427|gb|EGJ72868.1| hypothetical protein STTU_0079 [Streptomyces sp. Tu6071]
Length=253

 Score =  262 bits (669),  Expect = 4e-68, Method: Compositional matrix adjust.
 Identities = 141/228 (62%), Positives = 162/228 (72%), Gaps = 5/228 (2%)

Query  1    MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG  60
            M E TP    VRLD+LI+AIKRVH   LDQL+DAVLAAEHLGE+ADHLIGHFVDQARRSG
Sbjct  1    MTEQTPAHRAVRLDDLIDAIKRVHIGPLDQLTDAVLAAEHLGEVADHLIGHFVDQARRSG  60

Query  61   ASWSDIGKSMGVTKQAAQKRFVPR--AEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAA  118
            ASW+DIG SMGVT+QAAQKRFVP+   E   LD  QGF R+TPRAR  VVA+Q  A    
Sbjct  61   ASWTDIGTSMGVTRQAAQKRFVPKDSGEVAALDPEQGFSRYTPRARKVVVASQTQAREHG  120

Query  119  SSEITPDHLLLGVLTDPAALATALLQQQEI--DIATLRTAVTLPPAVTEP-PQPIPFSGP  175
             + I P HLLLG+L +P +L   +L  Q +  +         LPP   E  P  IPF   
Sbjct  121  HTRIAPAHLLLGLLDEPQSLGVVVLADQGVTREAVREAAEAALPPRGEEDLPTLIPFDAA  180

Query  176  ARKVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSR  223
            A+K+LELTFREALRLGHNYIGTEHL+LALLE E+GDG L   GV+K R
Sbjct  181  AKKILELTFREALRLGHNYIGTEHLVLALLEHENGDGLLAGLGVEKER  228


>gi|291006122|ref|ZP_06564095.1| putative Clp protease subunit [Saccharopolyspora erythraea NRRL 
2338]
Length=237

 Score =  262 bits (669),  Expect = 4e-68, Method: Compositional matrix adjust.
 Identities = 141/213 (67%), Positives = 164/213 (77%), Gaps = 2/213 (0%)

Query  11   VRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGASWSDIGKSM  70
            VRLD+LI AIK+VH DVL+QLS AV+A EHLGE+ADHLIGHFVDQARRSGASW++IG+SM
Sbjct  7    VRLDDLIEAIKKVHPDVLEQLSGAVVAGEHLGEVADHLIGHFVDQARRSGASWTEIGRSM  66

Query  71   GVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASSEITPDHLLLG  130
            GV+KQAAQKRFV + EA  LD +QGF RFT RAR+ VVAAQ+ A  A++ EI P HL+L 
Sbjct  67   GVSKQAAQKRFVAKGEALDLDPSQGFSRFTDRARSVVVAAQSQARAASNDEIQPAHLVLA  126

Query  131  VLTDPAALATALLQQQ--EIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVLELTFREAL  188
            +L +  ALA   +  Q  E++ A    +  LPPAV   P  IPF   ARK LELTFREAL
Sbjct  127  LLGESEALAAKAVVAQGVELEAAKREVSAALPPAVERVPDLIPFDPQARKALELTFREAL  186

Query  189  RLGHNYIGTEHLLLALLELEDGDGPLHRSGVDK  221
            RLGHNYIGTEH+LLALLELEDG G L R GVDK
Sbjct  187  RLGHNYIGTEHILLALLELEDGAGVLSRLGVDK  219


>gi|302537311|ref|ZP_07289653.1| Clp domain-containing protein [Streptomyces sp. C]
 gi|302446206|gb|EFL18022.1| Clp domain-containing protein [Streptomyces sp. C]
Length=251

 Score =  262 bits (669),  Expect = 4e-68, Method: Compositional matrix adjust.
 Identities = 149/244 (62%), Positives = 184/244 (76%), Gaps = 5/244 (2%)

Query  3    EPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGAS  62
            EP     PVRLD+LI AIK+VHSD L+QLSDAV+AAEHLG++ADHLIGHFVDQARRSGAS
Sbjct  7    EPVRITNPVRLDDLIEAIKKVHSDTLEQLSDAVVAAEHLGDVADHLIGHFVDQARRSGAS  66

Query  63   WSDIGKSMGVTKQAAQKRFVPRAEAT---TLDSNQGFRRFTPRARNAVVAAQNAAHGAAS  119
            W+DIG+SMGVT+QAAQKRFVP+A+      LD N GF RFTPRARN V++AQN A  A +
Sbjct  67   WTDIGRSMGVTRQAAQKRFVPKADKDGDPGLDPNAGFGRFTPRARNVVISAQNEARAAGN  126

Query  120  SEITPDHLLLGVLTDPAALATALLQQQEIDIATLRTA--VTLPPAVTEPPQPIPFSGPAR  177
            +EI  +HLLLG+L +   LA  +   + +    LR+A   TLPPA  E P  +PF   A+
Sbjct  127  AEIRTEHLLLGLLGETEGLAAHVFTSRGVAPDELRSAATATLPPAQEELPALVPFDANAK  186

Query  178  KVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTG  237
            KVLELTFREALRLGH Y+GTEH+LLALLE E+G+GPL  +G+ K+ AEA +   LA++ G
Sbjct  187  KVLELTFREALRLGHGYVGTEHILLALLEQENGEGPLSAAGLGKAAAEATVTEALAAVLG  246

Query  238  ANAA  241
             +AA
Sbjct  247  GDAA  250


>gi|311894311|dbj|BAJ26719.1| hypothetical protein KSE_08820 [Kitasatospora setae KM-6054]
Length=244

 Score =  262 bits (669),  Expect = 4e-68, Method: Compositional matrix adjust.
 Identities = 140/241 (59%), Positives = 176/241 (74%), Gaps = 5/241 (2%)

Query  1    MPEPTPTAYP-VRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRS  59
            M + T    P +RLD+LI  IK  + + LDQLS+AVL A+HLG++ADHLIGHFVDQARRS
Sbjct  1    MADTTGAKKPSIRLDDLIEGIKNSYPEALDQLSNAVLVADHLGDVADHLIGHFVDQARRS  60

Query  60   GASWSDIGKSMGVTKQAAQKRFVPR--AEATTLDSNQGFRRFTPRARNAVVAAQNAAHGA  117
            GASW+DIG+SMGVT+QAAQKRFVP+   E T +D+ QGF RFTPRARN V+AA  AA  A
Sbjct  61   GASWTDIGRSMGVTRQAAQKRFVPKDPGEVTEIDTAQGFNRFTPRARNVVMAAHQAAKDA  120

Query  118  ASSEITPDHLLLGVLTDPAALATALLQQQEIDIATLR--TAVTLPPAVTEPPQPIPFSGP  175
             + E+  +HL+LG+L +P  LATA L    + + T+R      LPPAV + P+ +P+   
Sbjct  121  RNDEVRTEHLVLGLLAEPEGLATAYLVTSGVPLDTVREAALAALPPAVEDAPELVPYDAG  180

Query  176  ARKVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASL  235
            A+K LELT REALRLGHNY+GTEHLLLAL+E E GDG L   G+DK+ AE + + TLA L
Sbjct  181  AKKALELTMREALRLGHNYVGTEHLLLALIEHEAGDGILTSLGLDKTAAETEFLATLAQL  240

Query  236  T  236
            T
Sbjct  241  T  241


>gi|134099843|ref|YP_001105504.1| putative Clp protease subunit [Saccharopolyspora erythraea NRRL 
2338]
 gi|133912466|emb|CAM02579.1| putative Clp protease subunit [Saccharopolyspora erythraea NRRL 
2338]
Length=235

 Score =  261 bits (668),  Expect = 5e-68, Method: Compositional matrix adjust.
 Identities = 141/213 (67%), Positives = 164/213 (77%), Gaps = 2/213 (0%)

Query  11   VRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGASWSDIGKSM  70
            VRLD+LI AIK+VH DVL+QLS AV+A EHLGE+ADHLIGHFVDQARRSGASW++IG+SM
Sbjct  5    VRLDDLIEAIKKVHPDVLEQLSGAVVAGEHLGEVADHLIGHFVDQARRSGASWTEIGRSM  64

Query  71   GVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASSEITPDHLLLG  130
            GV+KQAAQKRFV + EA  LD +QGF RFT RAR+ VVAAQ+ A  A++ EI P HL+L 
Sbjct  65   GVSKQAAQKRFVAKGEALDLDPSQGFSRFTDRARSVVVAAQSQARAASNDEIQPAHLVLA  124

Query  131  VLTDPAALATALLQQQ--EIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVLELTFREAL  188
            +L +  ALA   +  Q  E++ A    +  LPPAV   P  IPF   ARK LELTFREAL
Sbjct  125  LLGESEALAAKAVVAQGVELEAAKREVSAALPPAVERVPDLIPFDPQARKALELTFREAL  184

Query  189  RLGHNYIGTEHLLLALLELEDGDGPLHRSGVDK  221
            RLGHNYIGTEH+LLALLELEDG G L R GVDK
Sbjct  185  RLGHNYIGTEHILLALLELEDGAGVLSRLGVDK  217


>gi|302559314|ref|ZP_07311656.1| Clp amino domain-containing protein [Streptomyces griseoflavus 
Tu4000]
 gi|302476932|gb|EFL40025.1| Clp amino domain-containing protein [Streptomyces griseoflavus 
Tu4000]
Length=249

 Score =  261 bits (666),  Expect = 8e-68, Method: Compositional matrix adjust.
 Identities = 133/226 (59%), Positives = 166/226 (74%), Gaps = 3/226 (1%)

Query  11   VRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGASWSDIGKSM  70
            VRLD+LI AIK+VH + L+QL DAVLA EHLG++ADHLIGHFVDQARRSGASW+DIG+SM
Sbjct  11   VRLDDLIAAIKKVHEEPLEQLQDAVLAGEHLGDVADHLIGHFVDQARRSGASWTDIGRSM  70

Query  71   GVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASSEITPDHLLLG  130
            GVT+QAAQKRFVP+ E   LD +QGF R+TPRARN V+AA   A  A  +E  P+HL+LG
Sbjct  71   GVTRQAAQKRFVPK-EGNDLDPSQGFNRYTPRARNTVMAAHQEAQTAHHAEGLPEHLVLG  129

Query  131  VLTDPAALATALLQQQEIDI--ATLRTAVTLPPAVTEPPQPIPFSGPARKVLELTFREAL  188
            +L +P  LA   + +Q + +          LPPAV + P+ +P+   A+KVLELTFREAL
Sbjct  130  LLAEPQGLAVKAITEQGVTVPAVAEAARAALPPAVEDAPELVPYGPAAKKVLELTFREAL  189

Query  189  RLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLAS  234
            RLGHNYIGTEH+LLALLE E+G+G L   G+ K+  E  +   LA 
Sbjct  190  RLGHNYIGTEHILLALLEHENGEGLLSGLGITKAATERYVADMLAQ  235



Lambda     K      H
   0.316    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 365242488240


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40