BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2667
Length=252
Score E
Sequences producing significant alignments: (Bits) Value
gi|15842205|ref|NP_337242.1| hypothetical protein MT2741 [Mycoba... 501 3e-140
gi|121638542|ref|YP_978766.1| putative ATP-dependent protease AT... 500 7e-140
gi|289575365|ref|ZP_06455592.1| ATP-dependent protease ATP-bindi... 499 1e-139
gi|340627668|ref|YP_004746120.1| putative ATP-dependent protease... 489 2e-136
gi|307085360|ref|ZP_07494473.1| ATP-dependent protease ATP-bindi... 454 5e-126
gi|289444209|ref|ZP_06433953.1| ATP-dependent protease ATP-bindi... 396 2e-108
gi|183982062|ref|YP_001850353.1| ATP-dependent protease ATP-bind... 384 6e-105
gi|118618632|ref|YP_906964.1| ATP-dependent protease ATP-binding... 375 2e-102
gi|254776001|ref|ZP_05217517.1| putative ATP-dependent Clp prote... 350 1e-94
gi|336458834|gb|EGO37791.1| Clp amino terminal domain-containing... 350 1e-94
gi|118463869|ref|YP_882737.1| ATP-dependent Clp protease ATP-bin... 350 2e-94
gi|41408885|ref|NP_961721.1| ClpX' [Mycobacterium avium subsp. p... 349 2e-94
gi|296171946|ref|ZP_06852991.1| ATP-dependent Clp protease ATP-b... 328 5e-88
gi|342858462|ref|ZP_08715117.1| ATP-dependent Clp protease ATP-b... 327 1e-87
gi|254818544|ref|ZP_05223545.1| putative ATP-dependent Clp prote... 327 1e-87
gi|333991054|ref|YP_004523668.1| ATP-dependent protease ATP-bind... 327 1e-87
gi|108799192|ref|YP_639389.1| Clp, N terminal [Mycobacterium sp.... 320 1e-85
gi|158315876|ref|YP_001508384.1| Clp domain-containing protein [... 317 1e-84
gi|226308784|ref|YP_002768744.1| hypothetical protein RER_52970 ... 295 5e-78
gi|118467977|ref|YP_887123.1| Clp amino terminal domain-containi... 294 8e-78
gi|229488961|ref|ZP_04382827.1| Clp amino domain protein [Rhodoc... 293 2e-77
gi|226359789|ref|YP_002777567.1| hypothetical protein ROP_03750 ... 290 1e-76
gi|312141795|ref|YP_004009131.1| hypothetical protein REQ_44920 ... 283 1e-74
gi|345015376|ref|YP_004817730.1| Clp domain-containing protein [... 281 8e-74
gi|288919577|ref|ZP_06413906.1| Clp domain protein [Frankia sp. ... 278 4e-73
gi|324998388|ref|ZP_08119500.1| Clp domain-containing protein [P... 277 9e-73
gi|302545190|ref|ZP_07297532.1| Clp amino domain protein [Strept... 277 9e-73
gi|294630610|ref|ZP_06709170.1| Clp amino domain-containing prot... 276 2e-72
gi|120403486|ref|YP_953315.1| Clp N terminal domain-containing p... 276 3e-72
gi|297159744|gb|ADI09456.1| hypothetical protein SBI_06336 [Stre... 275 3e-72
gi|145224488|ref|YP_001135166.1| Clp N terminal domain-containin... 273 1e-71
gi|315444819|ref|YP_004077698.1| Clp amino terminal domain-conta... 273 2e-71
gi|159036935|ref|YP_001536188.1| Clp domain-containing protein [... 273 2e-71
gi|291448795|ref|ZP_06588185.1| clp domain-containing protein [S... 272 3e-71
gi|239991790|ref|ZP_04712454.1| putative ClpX protein [Streptomy... 272 4e-71
gi|302553134|ref|ZP_07305476.1| ATP-dependent Clp protease ATP-b... 271 8e-71
gi|258655270|ref|YP_003204426.1| Clp domain-containing protein [... 270 1e-70
gi|297201367|ref|ZP_06918764.1| Clp domain-containing protein [S... 270 1e-70
gi|328884586|emb|CCA57825.1| putative ClpX protein [Streptomyces... 269 2e-70
gi|111017265|ref|YP_700237.1| ATP-dependent Clp protease ATP-bin... 267 9e-70
gi|290958456|ref|YP_003489638.1| hypothetical protein SCAB_40081... 264 7e-69
gi|318059348|ref|ZP_07978071.1| Clp domain-containing protein [S... 263 2e-68
gi|257056231|ref|YP_003134063.1| Clp amino terminal domain-conta... 263 2e-68
gi|336177887|ref|YP_004583262.1| Clp domain-containing protein [... 262 3e-68
gi|333022575|ref|ZP_08450639.1| hypothetical protein STTU_0079 [... 262 4e-68
gi|291006122|ref|ZP_06564095.1| putative Clp protease subunit [S... 262 4e-68
gi|302537311|ref|ZP_07289653.1| Clp domain-containing protein [S... 262 4e-68
gi|311894311|dbj|BAJ26719.1| hypothetical protein KSE_08820 [Kit... 262 4e-68
gi|134099843|ref|YP_001105504.1| putative Clp protease subunit [... 261 5e-68
gi|302559314|ref|ZP_07311656.1| Clp amino domain-containing prot... 261 8e-68
>gi|15842205|ref|NP_337242.1| hypothetical protein MT2741 [Mycobacterium tuberculosis CDC1551]
gi|31793839|ref|NP_856332.1| ATP-dependent protease ATP-binding subunit ClpX' [Mycobacterium
bovis AF2122/97]
gi|57117011|ref|YP_177897.1| ATP-dependent protease ATP-binding subunit ClpC2 [Mycobacterium
tuberculosis H37Rv]
65 more sequence titles
Length=252
Score = 501 bits (1291), Expect = 3e-140, Method: Compositional matrix adjust.
Identities = 252/252 (100%), Positives = 252/252 (100%), Gaps = 0/252 (0%)
Query 1 MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG 60
MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG
Sbjct 1 MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG 60
Query 61 ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS 120
ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS
Sbjct 61 ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS 120
Query 121 EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVL 180
EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVL
Sbjct 121 EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVL 180
Query 181 ELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGANA 240
ELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGANA
Sbjct 181 ELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGANA 240
Query 241 AGATDAGATDAG 252
AGATDAGATDAG
Sbjct 241 AGATDAGATDAG 252
>gi|121638542|ref|YP_978766.1| putative ATP-dependent protease ATP-binding subunit clpX' [Mycobacterium
bovis BCG str. Pasteur 1173P2]
gi|224991034|ref|YP_002645723.1| putative ATP-dependent protease ATP-binding subunit [Mycobacterium
bovis BCG str. Tokyo 172]
gi|121494190|emb|CAL72668.1| Possible ATP-dependent protease ATP-binding subunit clpX' [Mycobacterium
bovis BCG str. Pasteur 1173P2]
gi|224774149|dbj|BAH26955.1| putative ATP-dependent protease ATP-binding subunit [Mycobacterium
bovis BCG str. Tokyo 172]
gi|341602580|emb|CCC65256.1| possible ATP-dependent protease ATP-binding subunit clpX' [Mycobacterium
bovis BCG str. Moreau RDJ]
Length=252
Score = 500 bits (1288), Expect = 7e-140, Method: Compositional matrix adjust.
Identities = 251/252 (99%), Positives = 251/252 (99%), Gaps = 0/252 (0%)
Query 1 MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG 60
MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG
Sbjct 1 MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG 60
Query 61 ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS 120
ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGA SS
Sbjct 61 ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGATSS 120
Query 121 EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVL 180
EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVL
Sbjct 121 EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVL 180
Query 181 ELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGANA 240
ELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGANA
Sbjct 181 ELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGANA 240
Query 241 AGATDAGATDAG 252
AGATDAGATDAG
Sbjct 241 AGATDAGATDAG 252
>gi|289575365|ref|ZP_06455592.1| ATP-dependent protease ATP-binding subunit clpC2 [Mycobacterium
tuberculosis K85]
gi|339632679|ref|YP_004724321.1| ATP-dependent protease ATP-binding SUBUNIT CLPC2 [Mycobacterium
africanum GM041182]
gi|289539796|gb|EFD44374.1| ATP-dependent protease ATP-binding subunit clpC2 [Mycobacterium
tuberculosis K85]
gi|339332035|emb|CCC27741.1| putative ATP-dependent protease ATP-binding SUBUNIT CLPC2 [Mycobacterium
africanum GM041182]
Length=252
Score = 499 bits (1285), Expect = 1e-139, Method: Compositional matrix adjust.
Identities = 251/252 (99%), Positives = 252/252 (100%), Gaps = 0/252 (0%)
Query 1 MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG 60
MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG
Sbjct 1 MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG 60
Query 61 ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS 120
ASWSDIGKS+GVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS
Sbjct 61 ASWSDIGKSIGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS 120
Query 121 EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVL 180
EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVL
Sbjct 121 EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVL 180
Query 181 ELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGANA 240
ELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGANA
Sbjct 181 ELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGANA 240
Query 241 AGATDAGATDAG 252
AGATDAGATDAG
Sbjct 241 AGATDAGATDAG 252
>gi|340627668|ref|YP_004746120.1| putative ATP-dependent protease ATP-binding subunit CLPC2 [Mycobacterium
canettii CIPT 140010059]
gi|340005858|emb|CCC45024.1| putative ATP-dependent protease ATP-binding subunit CLPC2 [Mycobacterium
canettii CIPT 140010059]
Length=247
Score = 489 bits (1258), Expect = 2e-136, Method: Compositional matrix adjust.
Identities = 245/247 (99%), Positives = 246/247 (99%), Gaps = 0/247 (0%)
Query 1 MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG 60
MPEPTPTAYPVRLDELI+AIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG
Sbjct 1 MPEPTPTAYPVRLDELIDAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG 60
Query 61 ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS 120
ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS
Sbjct 61 ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS 120
Query 121 EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVL 180
EITPDHLLLGVLTDPAALAT LLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVL
Sbjct 121 EITPDHLLLGVLTDPAALATVLLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVL 180
Query 181 ELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGANA 240
ELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGANA
Sbjct 181 ELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGANA 240
Query 241 AGATDAG 247
AGATDAG
Sbjct 241 AGATDAG 247
>gi|307085360|ref|ZP_07494473.1| ATP-dependent protease ATP-binding subunit clpC2 [Mycobacterium
tuberculosis SUMu012]
gi|308365089|gb|EFP53940.1| ATP-dependent protease ATP-binding subunit clpC2 [Mycobacterium
tuberculosis SUMu012]
Length=230
Score = 454 bits (1168), Expect = 5e-126, Method: Compositional matrix adjust.
Identities = 229/230 (99%), Positives = 230/230 (100%), Gaps = 0/230 (0%)
Query 23 VHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGASWSDIGKSMGVTKQAAQKRFV 82
+HSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGASWSDIGKSMGVTKQAAQKRFV
Sbjct 1 MHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGASWSDIGKSMGVTKQAAQKRFV 60
Query 83 PRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASSEITPDHLLLGVLTDPAALATAL 142
PRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASSEITPDHLLLGVLTDPAALATAL
Sbjct 61 PRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASSEITPDHLLLGVLTDPAALATAL 120
Query 143 LQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVLELTFREALRLGHNYIGTEHLLL 202
LQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVLELTFREALRLGHNYIGTEHLLL
Sbjct 121 LQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVLELTFREALRLGHNYIGTEHLLL 180
Query 203 ALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGANAAGATDAGATDAG 252
ALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGANAAGATDAGATDAG
Sbjct 181 ALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGANAAGATDAGATDAG 230
>gi|289444209|ref|ZP_06433953.1| ATP-dependent protease ATP-binding subunit clpC2 [Mycobacterium
tuberculosis T46]
gi|289417128|gb|EFD14368.1| ATP-dependent protease ATP-binding subunit clpC2 [Mycobacterium
tuberculosis T46]
Length=252
Score = 396 bits (1017), Expect = 2e-108, Method: Compositional matrix adjust.
Identities = 227/236 (97%), Positives = 227/236 (97%), Gaps = 0/236 (0%)
Query 1 MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG 60
MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG
Sbjct 1 MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG 60
Query 61 ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS 120
ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS
Sbjct 61 ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS 120
Query 121 EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVL 180
EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVL
Sbjct 121 EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVL 180
Query 181 ELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLT 236
ELTFREALR G LLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLT
Sbjct 181 ELTFREALRAGPQLHRDRTLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLT 236
>gi|183982062|ref|YP_001850353.1| ATP-dependent protease ATP-binding subunit ClpC2 [Mycobacterium
marinum M]
gi|183175388|gb|ACC40498.1| ATP-dependent protease ATP-binding subunit ClpC2 [Mycobacterium
marinum M]
Length=247
Score = 384 bits (986), Expect = 6e-105, Method: Compositional matrix adjust.
Identities = 194/237 (82%), Positives = 207/237 (88%), Gaps = 0/237 (0%)
Query 1 MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG 60
M E T YPVRLDELI+AIK+VH++ LDQL+DAVLAAEHLGEIADHLIGHFVDQARRSG
Sbjct 1 MAESTKITYPVRLDELIDAIKQVHTNALDQLTDAVLAAEHLGEIADHLIGHFVDQARRSG 60
Query 61 ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS 120
ASW+DIGKSMGVTKQAAQKRFVPRAEATTLD QGF RFTPRAR+AVVAAQNAAH A+
Sbjct 61 ASWTDIGKSMGVTKQAAQKRFVPRAEATTLDPEQGFGRFTPRARSAVVAAQNAAHQGAND 120
Query 121 EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVL 180
EITPDHLLLGVL DPAALATALL+ Q ID LR +V LP A E P IPFSGPARKVL
Sbjct 121 EITPDHLLLGVLADPAALATALLRMQAIDTEALRASVRLPAATGETPALIPFSGPARKVL 180
Query 181 ELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTG 237
ELTFREALRLGHNYIGTEH+LLALLELEDG GPLHRSGV+KSRAEADL + L SLTG
Sbjct 181 ELTFREALRLGHNYIGTEHMLLALLELEDGAGPLHRSGVEKSRAEADLSSALESLTG 237
>gi|118618632|ref|YP_906964.1| ATP-dependent protease ATP-binding subunit ClpC2 [Mycobacterium
ulcerans Agy99]
gi|118570742|gb|ABL05493.1| ATP-dependent protease ATP-binding subunit ClpC2 [Mycobacterium
ulcerans Agy99]
Length=247
Score = 375 bits (964), Expect = 2e-102, Method: Compositional matrix adjust.
Identities = 191/237 (81%), Positives = 205/237 (87%), Gaps = 0/237 (0%)
Query 1 MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG 60
M +PT YPVRLDELI+AIK+VH++ L QL+DAVLAAEHLGEIADHLIGHFVDQAR SG
Sbjct 1 MADPTKITYPVRLDELIDAIKQVHTNALGQLTDAVLAAEHLGEIADHLIGHFVDQARGSG 60
Query 61 ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS 120
ASW+DIGKSMGVTKQAAQKRFV RAEATTLD QGF RFTPRAR+AVVAAQNAAH A+
Sbjct 61 ASWTDIGKSMGVTKQAAQKRFVLRAEATTLDPEQGFGRFTPRARSAVVAAQNAAHQGAND 120
Query 121 EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVL 180
EITPDHLLLGVL DPAALATALL+ Q ID LR +V LP A E P IPFSGPARKVL
Sbjct 121 EITPDHLLLGVLADPAALATALLRMQAIDTEALRASVRLPAATGETPALIPFSGPARKVL 180
Query 181 ELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTG 237
ELTFREALRLGHNYIGTEH+LLALLELEDG GPLHRSGV+KSRAEADL + L SLTG
Sbjct 181 ELTFREALRLGHNYIGTEHMLLALLELEDGAGPLHRSGVEKSRAEADLSSALESLTG 237
>gi|254776001|ref|ZP_05217517.1| putative ATP-dependent Clp protease ATP-binding subunit [Mycobacterium
avium subsp. avium ATCC 25291]
Length=250
Score = 350 bits (898), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 185/251 (74%), Positives = 200/251 (80%), Gaps = 5/251 (1%)
Query 1 MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG 60
M EP A+PVRLDELI+AIK H DVLDQL+DAVLAAEHLGE+ADHLIGHFVDQARRSG
Sbjct 1 MSEPIRIAHPVRLDELIDAIKTTHPDVLDQLADAVLAAEHLGEVADHLIGHFVDQARRSG 60
Query 61 ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS 120
ASW+DIGKSMGV+KQAAQKRFVPR EAT LD QGF+RFTPRAR AVVAAQNAAH A +
Sbjct 61 ASWTDIGKSMGVSKQAAQKRFVPR-EATILDPGQGFQRFTPRARGAVVAAQNAAHQAGNR 119
Query 121 EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVT----EPPQPIPFSGPA 176
EITPDHLL+GVL+DPAALAT LL+ Q +D LR A T A +PP IPFSGPA
Sbjct 120 EITPDHLLIGVLSDPAALATVLLRLQHVDTDALRDAATAAIAALRADGDPPALIPFSGPA 179
Query 177 RKVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLT 236
RKVLELT REALRLGHNY+GTEH LLALLELEDGDGPLHR GVDK R E DLI L SL
Sbjct 180 RKVLELTVREALRLGHNYVGTEHQLLALLELEDGDGPLHRGGVDKERVEVDLIRALESLG 239
Query 237 GANAAGATDAG 247
GA + G
Sbjct 240 SGKNVGAGEDG 250
>gi|336458834|gb|EGO37791.1| Clp amino terminal domain-containing protein [Mycobacterium avium
subsp. paratuberculosis S397]
Length=250
Score = 350 bits (898), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 185/251 (74%), Positives = 200/251 (80%), Gaps = 5/251 (1%)
Query 1 MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG 60
M EP A+PVRLDELI+AIK H DVLDQL+DAVLAAEHLGE+ADHLIGHFVDQARRSG
Sbjct 1 MSEPIRIAHPVRLDELIDAIKTTHPDVLDQLADAVLAAEHLGEVADHLIGHFVDQARRSG 60
Query 61 ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS 120
ASW+DIGKSMGV+KQAAQKRFVPR EAT LD QGF+RFTPRAR AVVAAQNAAH A +
Sbjct 61 ASWTDIGKSMGVSKQAAQKRFVPR-EATILDPGQGFQRFTPRARGAVVAAQNAAHQAGNR 119
Query 121 EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVT----EPPQPIPFSGPA 176
EITPDHLL+GVL+DPAALAT LL+ Q +D LR A T A +PP IPFSGPA
Sbjct 120 EITPDHLLIGVLSDPAALATVLLRLQHVDTDALRDAATAAIAALRADGDPPALIPFSGPA 179
Query 177 RKVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLT 236
RKVLELT REALRLGHNY+GTEH LLALLELEDGDGPLHR GVDK R E DLI L SL
Sbjct 180 RKVLELTVREALRLGHNYVGTEHQLLALLELEDGDGPLHRGGVDKERVEVDLIRALESLG 239
Query 237 GANAAGATDAG 247
GA + G
Sbjct 240 NGKNVGAGEDG 250
>gi|118463869|ref|YP_882737.1| ATP-dependent Clp protease ATP-binding subunit [Mycobacterium
avium 104]
gi|118165156|gb|ABK66053.1| putative ATP-dependent Clp protease ATP-binding subunit [Mycobacterium
avium 104]
Length=250
Score = 350 bits (897), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 183/251 (73%), Positives = 198/251 (79%), Gaps = 5/251 (1%)
Query 1 MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG 60
M EP A+ VRLDELI+AIK H DVLDQL+DAVLAAEHLGE+ADHLIGHFVDQARRSG
Sbjct 1 MSEPIRIAHSVRLDELIDAIKTTHPDVLDQLADAVLAAEHLGEVADHLIGHFVDQARRSG 60
Query 61 ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS 120
ASW+DIGKSMGV+KQAAQKRFVPR EAT LD QGF+RFTPRAR AVVAAQNAAH A +
Sbjct 61 ASWTDIGKSMGVSKQAAQKRFVPR-EATILDPGQGFQRFTPRARGAVVAAQNAAHQAGNR 119
Query 121 EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVT----EPPQPIPFSGPA 176
EITPDHLL+GVL+DPAALAT LL+ Q +D LR A T A +PP IPFSGPA
Sbjct 120 EITPDHLLIGVLSDPAALATVLLRLQHVDTDALRDAATASIAALRADGDPPALIPFSGPA 179
Query 177 RKVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLT 236
RKVLELT REALRLGHNY+GTEH LLALLELEDGDG LHR GVDK R E DLI L SL
Sbjct 180 RKVLELTVREALRLGHNYVGTEHQLLALLELEDGDGLLHRGGVDKERVEVDLIRALESLG 239
Query 237 GANAAGATDAG 247
GA + G
Sbjct 240 SGKNVGAGEDG 250
>gi|41408885|ref|NP_961721.1| ClpX' [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41397244|gb|AAS05104.1| ClpX' [Mycobacterium avium subsp. paratuberculosis K-10]
Length=250
Score = 349 bits (895), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 184/251 (74%), Positives = 199/251 (80%), Gaps = 5/251 (1%)
Query 1 MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG 60
M EP +PVRLDELI+AIK H DVLDQL+DAVLAAEHLGE+ADHLIGHFVDQARRSG
Sbjct 1 MSEPIRIVHPVRLDELIDAIKTTHPDVLDQLADAVLAAEHLGEVADHLIGHFVDQARRSG 60
Query 61 ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS 120
ASW+DIGKSMGV+KQAAQKRFVPR EAT LD QGF+RFTPRAR AVVAAQNAAH A +
Sbjct 61 ASWTDIGKSMGVSKQAAQKRFVPR-EATILDPGQGFQRFTPRARGAVVAAQNAAHQAGNR 119
Query 121 EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVT----EPPQPIPFSGPA 176
EITPDHLL+GVL+DPAALAT LL+ Q +D LR A T A +PP IPFSGPA
Sbjct 120 EITPDHLLIGVLSDPAALATVLLRLQHVDTDALRDAATAAIAALRADGDPPALIPFSGPA 179
Query 177 RKVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLT 236
RKVLELT REALRLGHNY+GTEH LLALLELEDGDGPLHR GVDK R E DLI L SL
Sbjct 180 RKVLELTVREALRLGHNYVGTEHQLLALLELEDGDGPLHRGGVDKERVEVDLIRALESLG 239
Query 237 GANAAGATDAG 247
GA + G
Sbjct 240 NGKNVGAGEDG 250
>gi|296171946|ref|ZP_06852991.1| ATP-dependent Clp protease ATP-binding subunit [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295893879|gb|EFG73651.1| ATP-dependent Clp protease ATP-binding subunit [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length=244
Score = 328 bits (840), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 188/245 (77%), Positives = 203/245 (83%), Gaps = 4/245 (1%)
Query 1 MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG 60
M EPT AYPVRLDELI+AIK VH+D LDQL+DAVLAAEHLGE+ADHLIGHFVDQARRSG
Sbjct 1 MSEPTRIAYPVRLDELIDAIKSVHTDALDQLADAVLAAEHLGEVADHLIGHFVDQARRSG 60
Query 61 ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS 120
ASW+DIGKSMGVTKQAAQKRFVPRAE TLD QGF RFTPRAR AVVAAQNAAH A ++
Sbjct 61 ASWTDIGKSMGVTKQAAQKRFVPRAEPATLDPEQGFGRFTPRARGAVVAAQNAAHEAGNA 120
Query 121 EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVL 180
EITPDHLLLG+L DPAALAT LL Q++D LR AV LPPA + P IPFSGPARK L
Sbjct 121 EITPDHLLLGLLDDPAALATVLLHLQKVDTEALRAAVRLPPAGADTPDLIPFSGPARKAL 180
Query 181 ELTFREALRLGHNYIGTEHLLLALLELEDG---DGPLHRSGVDKSRAEADLITTLASLTG 237
ELTFR+ALRLGHNYIGTEHLLLALLEL+D +GPL R GVDK R EADL+ L SL G
Sbjct 181 ELTFRQALRLGHNYIGTEHLLLALLELDDSASDEGPLRRCGVDKDRVEADLVKALESL-G 239
Query 238 ANAAG 242
A A G
Sbjct 240 ARAQG 244
>gi|342858462|ref|ZP_08715117.1| ATP-dependent Clp protease ATP-binding subunit [Mycobacterium
colombiense CECT 3035]
gi|342134166|gb|EGT87346.1| ATP-dependent Clp protease ATP-binding subunit [Mycobacterium
colombiense CECT 3035]
Length=253
Score = 327 bits (838), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 182/240 (76%), Positives = 192/240 (80%), Gaps = 4/240 (1%)
Query 1 MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG 60
M EP AYP+RLDELI+AIK DVLDQL+DAVLAAEHLGEIADHLIGHFVDQARRSG
Sbjct 1 MSEPVRIAYPIRLDELIDAIKATRPDVLDQLADAVLAAEHLGEIADHLIGHFVDQARRSG 60
Query 61 ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS 120
ASW+DIGKSMGVTKQAAQKRFVPRAE LD QGF RFTPRAR AVVAAQNAAH A +
Sbjct 61 ASWTDIGKSMGVTKQAAQKRFVPRAEPAALDLEQGFTRFTPRARGAVVAAQNAAHEAGNG 120
Query 121 EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPP----AVTEPPQPIPFSGPA 176
EITPDHLLLGVL D AALAT LL Q +D LR A T A +PPQ IPFSGPA
Sbjct 121 EITPDHLLLGVLGDAAALATVLLHLQRVDTEALRAAATQAIAALHADAQPPQLIPFSGPA 180
Query 177 RKVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLT 236
RK LEL+ REALRLGHNY+GTEH LLALLELE GDGPLHR GVDK R EADLIT L SL+
Sbjct 181 RKALELSVREALRLGHNYVGTEHQLLALLELEGGDGPLHRHGVDKDRVEADLITALQSLS 240
>gi|254818544|ref|ZP_05223545.1| putative ATP-dependent Clp protease ATP-binding subunit [Mycobacterium
intracellulare ATCC 13950]
Length=256
Score = 327 bits (837), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 185/254 (73%), Positives = 197/254 (78%), Gaps = 8/254 (3%)
Query 1 MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG 60
M EP AYP+RLDELI AIK +H DVLDQL+DAVLAAEHLGEIADHLIGHFVDQARRSG
Sbjct 1 MSEPIRIAYPIRLDELITAIKTIHPDVLDQLTDAVLAAEHLGEIADHLIGHFVDQARRSG 60
Query 61 ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS 120
ASW+DIGKSMGVTKQAAQKRFVPRAEATTL QGF RFTPRAR AVVAAQNAAH A +
Sbjct 61 ASWTDIGKSMGVTKQAAQKRFVPRAEATTLGPEQGFARFTPRARGAVVAAQNAAHEAGNG 120
Query 121 EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAV----TEPPQPIPFSGPA 176
EITPDHLL+GVL D AALAT LL+ Q+ID LR A A +PP+ IPFSGPA
Sbjct 121 EITPDHLLIGVLADAAALATVLLRLQKIDTEALRDAAAASIAALRVEDQPPELIPFSGPA 180
Query 177 RKVLELTFREALRLGHNYIGTEHLLLALLELEDGD---GPLHRSGVDKSRAEADLITTLA 233
RK LELT REALRLGHNY+GTEH LLALLELE GPLHR GVDK R EADLI L
Sbjct 181 RKALELTVREALRLGHNYVGTEHQLLALLELEAASSTPGPLHRCGVDKDRVEADLIAALD 240
Query 234 SLTGANAAGATDAG 247
SL G + A D G
Sbjct 241 SLGGGKSV-APDGG 253
>gi|333991054|ref|YP_004523668.1| ATP-dependent protease ATP-binding subunit ClpC2 [Mycobacterium
sp. JDM601]
gi|333487022|gb|AEF36414.1| ATP-dependent protease ATP-binding subunit ClpC2 [Mycobacterium
sp. JDM601]
Length=248
Score = 327 bits (837), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 177/242 (74%), Positives = 195/242 (81%), Gaps = 0/242 (0%)
Query 1 MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG 60
M +PT A VRLD+LINAI RVH + L++L+DAVL AEHLGE+ADHLIGHFVDQARRSG
Sbjct 1 MVDPTRLAPSVRLDDLINAIARVHENPLERLTDAVLTAEHLGEVADHLIGHFVDQARRSG 60
Query 61 ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS 120
ASW++IG MGVTKQAAQKRFVPRAEA LD+ QGF RFTPRARNAVVAAQNAAHGA ++
Sbjct 61 ASWTEIGNCMGVTKQAAQKRFVPRAEAAALDAEQGFARFTPRARNAVVAAQNAAHGARNA 120
Query 121 EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVL 180
EITPDHL+LGVL DP ALATALL Q ID A + VTLP EPP IPFSG ARK L
Sbjct 121 EITPDHLILGVLNDPEALATALLTAQHIDPAAVAATVTLPAGDAEPPALIPFSGTARKAL 180
Query 181 ELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGANA 240
ELTFR ALRLGHNYIGTEHLLLAL E+EDG GPLHR+GV+ R E DL LAS+T A
Sbjct 181 ELTFRTALRLGHNYIGTEHLLLALFEVEDGTGPLHRAGVNPERFETDLAQALASITANTA 240
Query 241 AG 242
AG
Sbjct 241 AG 242
>gi|108799192|ref|YP_639389.1| Clp, N terminal [Mycobacterium sp. MCS]
gi|119868307|ref|YP_938259.1| Clp N terminal domain-containing protein [Mycobacterium sp. KMS]
gi|126434800|ref|YP_001070491.1| Clp N terminal domain-containing protein [Mycobacterium sp. JLS]
gi|108769611|gb|ABG08333.1| Clp, N terminal [Mycobacterium sp. MCS]
gi|119694396|gb|ABL91469.1| Clp N terminal domain protein [Mycobacterium sp. KMS]
gi|126234600|gb|ABN98000.1| Clp N terminal domain protein [Mycobacterium sp. JLS]
Length=240
Score = 320 bits (820), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 167/234 (72%), Positives = 185/234 (80%), Gaps = 1/234 (0%)
Query 6 PTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGASWSD 65
P A+PVRLD+LINAIK VH + LDQL+DAVLAAE LGE+ADHLIGHFVDQARRSGASW+D
Sbjct 4 PIAHPVRLDDLINAIKTVHDEPLDQLTDAVLAAEALGEVADHLIGHFVDQARRSGASWTD 63
Query 66 IGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASSEITPD 125
IGK MGVTKQAAQKRFVP+A+ LD NQGF RFTPRAR AVV AQN A A SEITPD
Sbjct 64 IGKCMGVTKQAAQKRFVPKADTEPLDPNQGFARFTPRARAAVVHAQNTAREARHSEITPD 123
Query 126 HLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPP-QPIPFSGPARKVLELTF 184
HLLLG+L D +L ALL Q + +R AV L P+ P +PFSGPA+KVLELTF
Sbjct 124 HLLLGLLVDTESLGVALLTAQGVAPQDVRAAVALTPSADGPALDLVPFSGPAKKVLELTF 183
Query 185 REALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGA 238
REALRLGHNYIGTEHLLLALLE ED DGPL R GVD+ RA+ DLI L S+TGA
Sbjct 184 REALRLGHNYIGTEHLLLALLESEDTDGPLSRLGVDRQRAQTDLIGLLDSITGA 237
>gi|158315876|ref|YP_001508384.1| Clp domain-containing protein [Frankia sp. EAN1pec]
gi|158111281|gb|ABW13478.1| Clp domain protein [Frankia sp. EAN1pec]
Length=257
Score = 317 bits (812), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 158/252 (63%), Positives = 192/252 (77%), Gaps = 4/252 (1%)
Query 2 PEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGA 61
P P P + PVRLD+LI AIK+ HSD LDQL+DAV+ A+HLGE+ADHLIGHFVDQARRSGA
Sbjct 4 PSPVPISNPVRLDDLIAAIKKAHSDALDQLTDAVMVADHLGEVADHLIGHFVDQARRSGA 63
Query 62 SWSDIGKSMGVTKQAAQKRFVPR--AEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAAS 119
SW++IG SMGVTKQAAQKRFVP+ E ++LD +QGF R+TPRARN++VAAQN A +
Sbjct 64 SWTEIGASMGVTKQAAQKRFVPKGPGEPSSLDPSQGFGRYTPRARNSIVAAQNETRAAGN 123
Query 120 SEITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVT--LPPAVTEPPQPIPFSGPAR 177
+EITP HL+LG+L DP L A + QE+ + +R AVT LPP V + P IPF GP++
Sbjct 124 AEITPGHLILGLLADPQGLGPAAIAAQEVSLDAVRQAVTAALPPRVDDLPALIPFDGPSK 183
Query 178 KVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTG 237
K LELTFREALRLGHNY+GTEH+LLALLELEDG GPL GVDK+ E L L+ +T
Sbjct 184 KALELTFREALRLGHNYVGTEHILLALLELEDGTGPLTALGVDKATVETYLAEALSLITA 243
Query 238 ANAAGATDAGAT 249
A G D+GA+
Sbjct 244 GRATGGQDSGAS 255
>gi|226308784|ref|YP_002768744.1| hypothetical protein RER_52970 [Rhodococcus erythropolis PR4]
gi|226187901|dbj|BAH36005.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length=242
Score = 295 bits (754), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 145/239 (61%), Positives = 186/239 (78%), Gaps = 4/239 (1%)
Query 1 MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG 60
M +P VRLD+LI+AIK+VH+D LDQLSDAV+AA+HLGE+ADHLIGHFVDQARRSG
Sbjct 1 MSKPVEMTNKVRLDDLIDAIKKVHTDALDQLSDAVIAADHLGEVADHLIGHFVDQARRSG 60
Query 61 ASWSDIGKSMGVTKQAAQKRFVPR--AEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAA 118
ASW++IG SMGV+KQAAQKRFVP+ ++ +D N+GF RFTPRA+N V+A+QN A A
Sbjct 61 ASWTEIGASMGVSKQAAQKRFVPKVPSDQKPMDPNEGFNRFTPRAKNVVMASQNEARAAG 120
Query 119 SSEITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAV--TLPPAVTEPPQPIPFSGPA 176
++EI P+HLLLG++ +PA LA + Q +++ ++R AV LP +E P+ IP+ A
Sbjct 121 NAEIQPEHLLLGLVEEPAGLAAKAIVAQGVELRSVRAAVAGVLPAPTSELPELIPYDARA 180
Query 177 RKVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASL 235
RKVLELTFREALRLGHNYIGTEH+LLALLELEDG G L G+ KS AE++++ LA +
Sbjct 181 RKVLELTFREALRLGHNYIGTEHILLALLELEDGSGVLADLGISKSVAESNIVGALAVI 239
>gi|118467977|ref|YP_887123.1| Clp amino terminal domain-containing protein [Mycobacterium smegmatis
str. MC2 155]
gi|118169264|gb|ABK70160.1| Clp amino terminal domain protein [Mycobacterium smegmatis str.
MC2 155]
Length=244
Score = 294 bits (753), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 150/235 (64%), Positives = 176/235 (75%), Gaps = 3/235 (1%)
Query 1 MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG 60
M E PVRLD+LI+ IK H++ L+QL+DAV+AA+ LGEIADHLIGHFVDQARRSG
Sbjct 1 MVEHAKITNPVRLDDLIDGIKHAHTEPLEQLTDAVIAADALGEIADHLIGHFVDQARRSG 60
Query 61 ASWSDIGKSMGVTKQAAQKRFVPRA---EATTLDSNQGFRRFTPRARNAVVAAQNAAHGA 117
ASW++IGK MGVTKQAAQKRFVP+ + T L+ +GF RFTPRARN +V A N AH A
Sbjct 61 ASWTEIGKCMGVTKQAAQKRFVPKVPDFDPTALNPEEGFGRFTPRARNVIVVAHNLAHDA 120
Query 118 ASSEITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPAR 177
++EITPDHLLLG+ D LA LL Q +D +R AVTLPP+ E IPF A+
Sbjct 121 RNAEITPDHLLLGLFADTEGLAAKLLAGQGVDADAVRAAVTLPPSTGEAAALIPFDTAAK 180
Query 178 KVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTL 232
K LELTFR+ALRLGHNYIGTEH+LLAL++ EDGDGPLHR GVD R EADL T L
Sbjct 181 KALELTFRQALRLGHNYIGTEHILLALVDAEDGDGPLHRLGVDAERFEADLRTAL 235
>gi|229488961|ref|ZP_04382827.1| Clp amino domain protein [Rhodococcus erythropolis SK121]
gi|229324465|gb|EEN90220.1| Clp amino domain protein [Rhodococcus erythropolis SK121]
Length=238
Score = 293 bits (749), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 144/229 (63%), Positives = 183/229 (80%), Gaps = 4/229 (1%)
Query 11 VRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGASWSDIGKSM 70
VRLD+LI+AIK+VH+D LDQLSDAV+AA+HLGE+ADHLIGHFVDQARRSGASW++IG SM
Sbjct 7 VRLDDLIDAIKKVHTDALDQLSDAVIAADHLGEVADHLIGHFVDQARRSGASWTEIGASM 66
Query 71 GVTKQAAQKRFVPRA--EATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASSEITPDHLL 128
GV+KQAAQKRFVP+A + +D N+GF RFTPRA+N V+A+QN A A ++EI P+HLL
Sbjct 67 GVSKQAAQKRFVPKAPSDQKPMDPNEGFNRFTPRAKNVVMASQNEARAAGNAEIQPEHLL 126
Query 129 LGVLTDPAALATALLQQQEIDIATLRTAV--TLPPAVTEPPQPIPFSGPARKVLELTFRE 186
LG++ +PA LA + Q +++ ++R AV LP +E P+ IP+ ARKVLELTFRE
Sbjct 127 LGLVEEPAGLAAKAIVAQGVELGSVRAAVAGVLPTPTSELPELIPYDARARKVLELTFRE 186
Query 187 ALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASL 235
ALRLGHNYIGTEH+LLALLELEDG G L G+ KS AE++++ LA +
Sbjct 187 ALRLGHNYIGTEHILLALLELEDGSGVLADLGISKSVAESNIVGALAVI 235
>gi|226359789|ref|YP_002777567.1| hypothetical protein ROP_03750 [Rhodococcus opacus B4]
gi|226238274|dbj|BAH48622.1| hypothetical protein [Rhodococcus opacus B4]
Length=247
Score = 290 bits (742), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 151/233 (65%), Positives = 179/233 (77%), Gaps = 5/233 (2%)
Query 1 MPEPTPTAYPVRLDELINAIKRVHSDV-LDQLSDAVLAAEHLGEIADHLIGHFVDQARRS 59
M TP P+RLD+LI AIK+ H++ L+QL+DAVLAAEHLG++ADHLIGHFVDQARRS
Sbjct 1 MENSTPVTPPIRLDDLIEAIKKGHAEAPLEQLTDAVLAAEHLGDLADHLIGHFVDQARRS 60
Query 60 GASWSDIGKSMGVTKQAAQKRFVPR--AEATTLDSNQGFRRFTPRARNAVVAAQNAAHGA 117
GASW++IGKSMGVTKQAAQKRFVP+ +A+ LD NQGF RFTPRAR VV AQN A A
Sbjct 61 GASWTEIGKSMGVTKQAAQKRFVPKDPGQASDLDPNQGFSRFTPRARQVVVVAQNEARAA 120
Query 118 ASSEITPDHLLLGVLTDPAALATALLQQQEIDIATLRTA--VTLPPAVTEPPQPIPFSGP 175
++SEI P HL+LG+LTDP L + Q +D+ T+R A TLPPAV E P IPF
Sbjct 121 SNSEILPQHLVLGLLTDPDGLGARAIAAQGVDLDTVRHAATATLPPAVEEIPALIPFDAQ 180
Query 176 ARKVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADL 228
+RK LELTFREALRLGHNYIGTEH+LLALLE+EDG G L GVDK+ E ++
Sbjct 181 SRKALELTFREALRLGHNYIGTEHILLALLEVEDGVGVLAGLGVDKAAVEENI 233
>gi|312141795|ref|YP_004009131.1| hypothetical protein REQ_44920 [Rhodococcus equi 103S]
gi|325672947|ref|ZP_08152641.1| ATP-dependent Clp protease ATP-binding subunit [Rhodococcus equi
ATCC 33707]
gi|311891134|emb|CBH50453.1| conserved hypothetical protein [Rhodococcus equi 103S]
gi|325556200|gb|EGD25868.1| ATP-dependent Clp protease ATP-binding subunit [Rhodococcus equi
ATCC 33707]
Length=241
Score = 283 bits (725), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 150/233 (65%), Positives = 174/233 (75%), Gaps = 8/233 (3%)
Query 10 PVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGASWSDIGKS 69
PVRLD+LI AIK+VHSD L+QL+DAVLAAEHL E+ADHLIGHFVDQARRSGASW+DIG+S
Sbjct 4 PVRLDDLIEAIKKVHSDALEQLTDAVLAAEHLDEVADHLIGHFVDQARRSGASWTDIGRS 63
Query 70 MGVTKQAAQKRFVPRA--EATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASSEITPDHL 127
MGVTKQAAQKRFVP+ E + LD++QGF RFTPRARN V+AAQN A A + +ITP+H+
Sbjct 64 MGVTKQAAQKRFVPKGPEEPSDLDASQGFSRFTPRARNVVMAAQNEARAAGNDQITPEHV 123
Query 128 LLGVLTDPAALATALLQQQEID--IATLRTAVTLPPAVTEPPQPIPFSGPARKVLELTFR 185
+LG+L++P +LA L Q+ID LP E P IPF ARK LELTFR
Sbjct 124 VLGLLSEPESLAVKALAAQDIDAEAVRAAATAVLPARADEVPDLIPFDAGARKALELTFR 183
Query 186 EALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDK----SRAEADLITTLAS 234
EALRLGHNYIGTEH+LLALLELED G L GV+K S EA L T L S
Sbjct 184 EALRLGHNYIGTEHILLALLELEDRAGVLAELGVEKAAVDSYVEAVLATILES 236
>gi|345015376|ref|YP_004817730.1| Clp domain-containing protein [Streptomyces violaceusniger Tu
4113]
gi|344041725|gb|AEM87450.1| Clp domain protein [Streptomyces violaceusniger Tu 4113]
Length=249
Score = 281 bits (718), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 149/242 (62%), Positives = 184/242 (77%), Gaps = 4/242 (1%)
Query 1 MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG 60
M +P ++PVRLD+LI AIK+VH+D L+QL+DAV+AAEHL E+ADHLIGHFVDQARRSG
Sbjct 1 MTKPVGLSHPVRLDDLIEAIKKVHTDALEQLTDAVIAAEHLDEVADHLIGHFVDQARRSG 60
Query 61 ASWSDIGKSMGVTKQAAQKRFVPRA--EATTLDSNQGFRRFTPRARNAVVAAQNAAHGAA 118
ASW+DIGKSMGVT+QAAQKRFVP+A E + LD NQGF R+TPRARN V+AA N A A+
Sbjct 61 ASWTDIGKSMGVTRQAAQKRFVPKAPGEPSDLDPNQGFSRYTPRARNTVMAAANEARAAS 120
Query 119 SSEITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVT--LPPAVTEPPQPIPFSGPA 176
+ E+ P+HL+LG+L +P LA + Q + + T+R A T LPPA E P+ IP+ A
Sbjct 121 NGEVRPEHLVLGLLQEPEGLAAKAILAQGVLLDTVRQAATEALPPAAEEVPELIPYDAGA 180
Query 177 RKVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLT 236
RKVLELTFREALRLGHNYIGTEH+LLALLE EDG G L G+DK+ A ++ L +
Sbjct 181 RKVLELTFREALRLGHNYIGTEHILLALLEHEDGAGLLTGLGIDKATAVDNITQALTRIA 240
Query 237 GA 238
A
Sbjct 241 EA 242
>gi|288919577|ref|ZP_06413906.1| Clp domain protein [Frankia sp. EUN1f]
gi|288348975|gb|EFC83223.1| Clp domain protein [Frankia sp. EUN1f]
Length=259
Score = 278 bits (712), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 152/246 (62%), Positives = 179/246 (73%), Gaps = 4/246 (1%)
Query 3 EPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGAS 62
+PT + VRLD+LI AIK+ H+D L+QLS AVL A+HLG++ADHLIGHFVDQARRSGAS
Sbjct 5 DPTALSNSVRLDDLIAAIKKTHADALEQLSGAVLVADHLGDVADHLIGHFVDQARRSGAS 64
Query 63 WSDIGKSMGVTKQAAQKRFVPR--AEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS 120
W++IG+SMGVTKQAAQKRFVP+ E +LD QGF R+T RARNAVVAAQN A A ++
Sbjct 65 WTEIGRSMGVTKQAAQKRFVPKEPGEPESLDPAQGFGRYTQRARNAVVAAQNEARAAGNA 124
Query 121 EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVT--LPPAVTEPPQPIPFSGPARK 178
EIT +HLLLG+L DPA L A + Q +A +R A T L P V E P IPF G A+K
Sbjct 125 EITAEHLLLGLLADPAGLGAAAIVAQGAPLAAVREAATANLAPPVAEVPDLIPFDGRAKK 184
Query 179 VLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGA 238
LELTFREALRL H+Y+GTEH+LLALLELEDG GPL GV K AE L LA
Sbjct 185 ALELTFREALRLDHSYVGTEHILLALLELEDGAGPLTSLGVTKPGAETHLRQLLALAVSG 244
Query 239 NAAGAT 244
+A AT
Sbjct 245 PSATAT 250
>gi|324998388|ref|ZP_08119500.1| Clp domain-containing protein [Pseudonocardia sp. P1]
Length=245
Score = 277 bits (709), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 145/244 (60%), Positives = 177/244 (73%), Gaps = 3/244 (1%)
Query 1 MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG 60
M P+P VRLD+LI+AI VHSD L+QLS AVLA +HLG++ADHLIGHFVD+ARRSG
Sbjct 1 MTTPSPVTGTVRLDDLISAITDVHSDPLEQLSGAVLAGDHLGDLADHLIGHFVDRARRSG 60
Query 61 ASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASS 120
ASW+DIG+SMGV+KQAAQKRFVP+ + +D +GF+RFTPRAR VVAAQ+ A A +
Sbjct 61 ASWTDIGRSMGVSKQAAQKRFVPKPD-EPVDPEEGFKRFTPRARGVVVAAQSEARSAGND 119
Query 121 EITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVT--LPPAVTEPPQPIPFSGPARK 178
ITP HL+LG+ DP ALA LL+ Q + LR A LP V + P +PF G A+K
Sbjct 120 RITPAHLVLGLAADPQALAVVLLEPQGVTPDALREAAVARLPERVEQVPDLVPFDGAAKK 179
Query 179 VLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGA 238
LELTFR+ALRLGHNY+GTEH+LLALLE EDGDG L GVD RAEA ++ LA++
Sbjct 180 ALELTFRQALRLGHNYVGTEHILLALLEQEDGDGVLSGLGVDGPRAEAAIVKALAAIAAQ 239
Query 239 NAAG 242
G
Sbjct 240 QEQG 243
>gi|302545190|ref|ZP_07297532.1| Clp amino domain protein [Streptomyces hygroscopicus ATCC 53653]
gi|302462808|gb|EFL25901.1| Clp amino domain protein [Streptomyces himastatinicus ATCC 53653]
Length=253
Score = 277 bits (709), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 137/236 (59%), Positives = 176/236 (75%), Gaps = 3/236 (1%)
Query 3 EPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGAS 62
+P + VRLD+LI AIK+ H+D L+QL+DAV+AA+HLG++ADHLIGHFVDQARRSGAS
Sbjct 9 QPVDMTHSVRLDDLIEAIKKTHTDALEQLTDAVIAADHLGDVADHLIGHFVDQARRSGAS 68
Query 63 WSDIGKSMGVTKQAAQKRFVPRAEATT-LDSNQGFRRFTPRARNAVVAAQNAAHGAASSE 121
W+DIGKSMGVT+QAAQKRFVP+ A LD +QGF R+TPRARN VV++QN A A ++E
Sbjct 69 WTDIGKSMGVTRQAAQKRFVPKGSAAQDLDPSQGFGRYTPRARNVVVSSQNEARAANNAE 128
Query 122 ITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVT--LPPAVTEPPQPIPFSGPARKV 179
I +HL+LG+L +P + + Q++ + T+R A T LPPAV P +PF A+KV
Sbjct 129 IRTEHLVLGLLAEPEGVGAKAITAQDVLLDTVRQAATAALPPAVDSMPALVPFDASAKKV 188
Query 180 LELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASL 235
LELTFREALRLGHNY+GTEH+LLALLE EDG G G+ K+ EA ++ L +
Sbjct 189 LELTFREALRLGHNYVGTEHILLALLEHEDGSGLFADLGIAKAGVEASVVRMLEQI 244
>gi|294630610|ref|ZP_06709170.1| Clp amino domain-containing protein [Streptomyces sp. e14]
gi|292833943|gb|EFF92292.1| Clp amino domain-containing protein [Streptomyces sp. e14]
Length=288
Score = 276 bits (707), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 146/238 (62%), Positives = 182/238 (77%), Gaps = 4/238 (1%)
Query 1 MPEPTPTAYP-VRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRS 59
M P P VRLD+LI+AIK+VH + L+QL DAVLA EHLGE+ADHLIGHFVDQARRS
Sbjct 1 MTNPNPAIRSSVRLDDLISAIKKVHQEPLEQLQDAVLAGEHLGEVADHLIGHFVDQARRS 60
Query 60 GASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAAS 119
GASW+DIG+SMGVT+QAAQKRFVP+ E+ LD +QGF R+TPRAR ++AA +AA A +
Sbjct 61 GASWTDIGRSMGVTRQAAQKRFVPK-ESNDLDPSQGFSRYTPRARKVLMAAHDAAKAARN 119
Query 120 SEITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVT--LPPAVTEPPQPIPFSGPAR 177
+E P HL+LG+LT+P ALA +Q Q + + T+R A T LPPAV + P+ +P+ A+
Sbjct 120 AEGLPAHLILGLLTEPEALAAKAVQHQGVPLETIREAATAALPPAVADAPELVPYGPAAK 179
Query 178 KVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASL 235
K LELTFREALRLGHNYIGTEH+LLALLELE+G+G L G+ K R E ++TTLA
Sbjct 180 KALELTFREALRLGHNYIGTEHMLLALLELENGEGVLSGLGIGKDRTEEFVVTTLAEF 237
>gi|120403486|ref|YP_953315.1| Clp N terminal domain-containing protein [Mycobacterium vanbaalenii
PYR-1]
gi|119956304|gb|ABM13309.1| Clp N terminal domain protein [Mycobacterium vanbaalenii PYR-1]
Length=239
Score = 276 bits (705), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 141/235 (60%), Positives = 171/235 (73%), Gaps = 2/235 (0%)
Query 5 TPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGASWS 64
+ ++PVRLD+LI+ IK+VH + L+QL+DAVLAAE LGE+ADHLIGHFVDQARRSGASW+
Sbjct 4 SKISHPVRLDDLIDVIKQVHDEPLEQLTDAVLAAEALGEVADHLIGHFVDQARRSGASWT 63
Query 65 DIGKSMGVTKQAAQKRFVPRAEATT--LDSNQGFRRFTPRARNAVVAAQNAAHGAASSEI 122
+IGK MGVTKQAAQKRFVP+ T LD + GF RFTPRAR +V AQN AH A + EI
Sbjct 64 EIGKCMGVTKQAAQKRFVPKTPTDTGALDPDAGFSRFTPRARAVIVEAQNKAHDAGNPEI 123
Query 123 TPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVLEL 182
P HL+LG+ DP LA L+ Q +D+A + +TLP V P IPF A+K LEL
Sbjct 124 LPAHLILGMFADPTGLAARLVAGQGVDLAAVADHITLPARVDGVPALIPFDTRAKKALEL 183
Query 183 TFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTG 237
TFR+ALRLGHNY+GTEHLLLAL E ED DG LH G+D R E +L L + +G
Sbjct 184 TFRQALRLGHNYVGTEHLLLALYEEEDDDGVLHGLGIDFDRFERELREALEAFSG 238
>gi|297159744|gb|ADI09456.1| hypothetical protein SBI_06336 [Streptomyces bingchenggensis
BCW-1]
Length=240
Score = 275 bits (704), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 144/235 (62%), Positives = 177/235 (76%), Gaps = 4/235 (1%)
Query 10 PVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGASWSDIGKS 69
PVRLD+LI AIK+VHS LDQLSDAV+AA+HLG++ADHLIGHFVDQARRSGASWS+IG+S
Sbjct 4 PVRLDDLIEAIKKVHSQPLDQLSDAVIAADHLGDVADHLIGHFVDQARRSGASWSEIGQS 63
Query 70 MGVTKQAAQKRFVPR--AEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASSEITPDHL 127
MGVT+QAAQKRFVP+ E + LD NQ F R+TPRA+N V+AA N A A + EI P+HL
Sbjct 64 MGVTRQAAQKRFVPKDPGELSALDPNQSFGRYTPRAKNVVMAAMNEAQAARNPEIRPEHL 123
Query 128 LLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVT--EPPQPIPFSGPARKVLELTFR 185
+LG+L+ P ALA + Q++ + T+R A T E P+ +P+ +RKVLELTFR
Sbjct 124 MLGLLSQPGALAAKAIIAQDVLLDTVRQAATAALPPAADEVPELVPYDAASRKVLELTFR 183
Query 186 EALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGANA 240
EALRLGHNYIGTEH+LLALLE EDG G L G+DK AEA L LA++ A +
Sbjct 184 EALRLGHNYIGTEHILLALLEYEDGTGVLAGLGIDKPAAEAHLAQELAAILKAKS 238
>gi|145224488|ref|YP_001135166.1| Clp N terminal domain-containing protein [Mycobacterium gilvum
PYR-GCK]
gi|145216974|gb|ABP46378.1| Clp N terminal domain protein [Mycobacterium gilvum PYR-GCK]
Length=240
Score = 273 bits (699), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 143/239 (60%), Positives = 167/239 (70%), Gaps = 2/239 (0%)
Query 1 MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG 60
M + + PVRLD+LI I RVH + LDQL+DAVLAAE L ++ADHLIGHFVDQARRSG
Sbjct 1 MSDAAKISRPVRLDDLIEVITRVHDEPLDQLTDAVLAAEALDDVADHLIGHFVDQARRSG 60
Query 61 ASWSDIGKSMGVTKQAAQKRFVPRAEATT--LDSNQGFRRFTPRARNAVVAAQNAAHGAA 118
ASW++IGK MGVTKQAAQKRFVP+ T LD + GF RFT RAR AVV AQN AH A
Sbjct 61 ASWTEIGKCMGVTKQAAQKRFVPKTPTDTAALDPDAGFSRFTERARAAVVHAQNEAHAAG 120
Query 119 SSEITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARK 178
+ EI P HL+LG+ +DP+ LA L+ Q I + +R + LP + P +PF G A+K
Sbjct 121 NGEIAPAHLVLGLFSDPSGLAAQLVAAQGIALDGIRDRIVLPARSEDVPALVPFDGRAKK 180
Query 179 VLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTG 237
LELTFR ALRLGHNYIGTEHLLLAL E ED DG LH G+D R E DL L L G
Sbjct 181 ALELTFRHALRLGHNYIGTEHLLLALYEEEDADGVLHGVGIDAERFERDLRQALDGLPG 239
>gi|315444819|ref|YP_004077698.1| Clp amino terminal domain-containing protein [Mycobacterium sp.
Spyr1]
gi|315263122|gb|ADT99863.1| Clp amino terminal domain-containing protein [Mycobacterium sp.
Spyr1]
Length=240
Score = 273 bits (698), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 143/239 (60%), Positives = 167/239 (70%), Gaps = 2/239 (0%)
Query 1 MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG 60
M + + PVRLD+LI I RVH + LDQL+DAVLAAE L ++ADHLIGHFVDQARRSG
Sbjct 1 MSDAAKISRPVRLDDLIEVITRVHDEPLDQLTDAVLAAEALDDVADHLIGHFVDQARRSG 60
Query 61 ASWSDIGKSMGVTKQAAQKRFVPRAEATT--LDSNQGFRRFTPRARNAVVAAQNAAHGAA 118
ASW++IGK MGVTKQAAQKRFVP+ T LD + GF RFT RAR AVV AQN AH A
Sbjct 61 ASWTEIGKCMGVTKQAAQKRFVPKTPTDTAALDPDAGFSRFTERARAAVVHAQNEAHAAG 120
Query 119 SSEITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARK 178
+ EI P HL+LG+ +DP+ LA L+ Q I + +R + LP + P +PF G A+K
Sbjct 121 NGEIAPAHLVLGLFSDPSGLAAQLVAAQGIALDGIRDRIVLPARSEDVPALVPFDGRAKK 180
Query 179 VLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTG 237
LELTFR ALRLGHNYIGTEHLLLAL E ED DG LH G+D R E DL L L G
Sbjct 181 ALELTFRHALRLGHNYIGTEHLLLALYEEEDADGVLHGLGIDAERFERDLRQALDGLPG 239
>gi|159036935|ref|YP_001536188.1| Clp domain-containing protein [Salinispora arenicola CNS-205]
gi|157915770|gb|ABV97197.1| Clp domain protein [Salinispora arenicola CNS-205]
Length=243
Score = 273 bits (698), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 144/239 (61%), Positives = 174/239 (73%), Gaps = 3/239 (1%)
Query 1 MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG 60
M EP +PVRLDELI+ IK+ H++ LDQL+DAVLA +HLGE+ADHLIGHFVDQARRSG
Sbjct 1 MTEPLTMTHPVRLDELIDHIKQAHTNALDQLADAVLAGDHLGEVADHLIGHFVDQARRSG 60
Query 61 ASWSDIGKSMGVTKQAAQKRFVPRAE-ATTLDSNQGFRRFTPRARNAVVAAQNAAHGAAS 119
ASW++IG+SMGV+KQAAQKR + E A L S GF RFT RARN VVA+Q A A +
Sbjct 61 ASWTEIGRSMGVSKQAAQKRSAAKVETAAALGSEAGFGRFTTRARNVVVASQEEARAAGN 120
Query 120 SEITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAV--TLPPAVTEPPQPIPFSGPAR 177
EI P HL LG+L D ALA L++ + I + +LR AV TLP V + P IP+ +
Sbjct 121 VEIGPGHLALGLLVDLDALAPQLIKARGISLDSLREAVTATLPSRVEQVPDLIPYDARGK 180
Query 178 KVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLT 236
KVLELTFREALRLGHNYIGTEH+LLAL+E EDGDG L G++K EA + LA+LT
Sbjct 181 KVLELTFREALRLGHNYIGTEHILLALIEEEDGDGVLTGLGLEKKDVEAAVQGALAALT 239
>gi|291448795|ref|ZP_06588185.1| clp domain-containing protein [Streptomyces roseosporus NRRL
15998]
gi|291351742|gb|EFE78646.1| clp domain-containing protein [Streptomyces roseosporus NRRL
15998]
Length=255
Score = 272 bits (696), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 142/242 (59%), Positives = 173/242 (72%), Gaps = 4/242 (1%)
Query 1 MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG 60
M +P P VRLD+LI AIK+ + D L+QLS AVLAA+HLG++ADHLIGHFVDQARRSG
Sbjct 8 MTQPLPVTPSVRLDDLIEAIKKTNDDALEQLSGAVLAADHLGDVADHLIGHFVDQARRSG 67
Query 61 ASWSDIGKSMGVTKQAAQKRFVPRA--EATTLDSNQGFRRFTPRARNAVVAAQNAAHGAA 118
ASW+DIG+SMGVT+QAAQKRFVP+ ++ LD N+GF RFTPRARN VVA+ N A A
Sbjct 68 ASWTDIGRSMGVTRQAAQKRFVPKKGESSSDLDPNEGFNRFTPRARNVVVASHNEAQAAR 127
Query 119 SSEITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVT--LPPAVTEPPQPIPFSGPA 176
+EI P HL+LG+L +P A+A +L Q + LR A T L V E P+ IP+ A
Sbjct 128 HAEIVPAHLILGLLAEPEAIAARVLVGQGVRPDALRAAATAVLSAPVDEAPELIPYDADA 187
Query 177 RKVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLT 236
+KVLELTFREALRLGHNY+GTEH+LLALLE EDG G L G+DK A + +
Sbjct 188 KKVLELTFREALRLGHNYVGTEHILLALLEFEDGSGVLTGLGLDKEAVSAAVERAVGEAA 247
Query 237 GA 238
GA
Sbjct 248 GA 249
>gi|239991790|ref|ZP_04712454.1| putative ClpX protein [Streptomyces roseosporus NRRL 11379]
Length=248
Score = 272 bits (695), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 142/242 (59%), Positives = 173/242 (72%), Gaps = 4/242 (1%)
Query 1 MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG 60
M +P P VRLD+LI AIK+ + D L+QLS AVLAA+HLG++ADHLIGHFVDQARRSG
Sbjct 1 MTQPLPVTPSVRLDDLIEAIKKTNDDALEQLSGAVLAADHLGDVADHLIGHFVDQARRSG 60
Query 61 ASWSDIGKSMGVTKQAAQKRFVPRA--EATTLDSNQGFRRFTPRARNAVVAAQNAAHGAA 118
ASW+DIG+SMGVT+QAAQKRFVP+ ++ LD N+GF RFTPRARN VVA+ N A A
Sbjct 61 ASWTDIGRSMGVTRQAAQKRFVPKKGESSSDLDPNEGFNRFTPRARNVVVASHNEAQAAR 120
Query 119 SSEITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVT--LPPAVTEPPQPIPFSGPA 176
+EI P HL+LG+L +P A+A +L Q + LR A T L V E P+ IP+ A
Sbjct 121 HAEIVPAHLILGLLAEPEAIAARVLVGQGVRPDALRAAATAVLSAPVDEAPELIPYDADA 180
Query 177 RKVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLT 236
+KVLELTFREALRLGHNY+GTEH+LLALLE EDG G L G+DK A + +
Sbjct 181 KKVLELTFREALRLGHNYVGTEHILLALLEFEDGSGVLTGLGLDKEAVSAAVERAVGEAA 240
Query 237 GA 238
GA
Sbjct 241 GA 242
>gi|302553134|ref|ZP_07305476.1| ATP-dependent Clp protease ATP-binding subunit [Streptomyces
viridochromogenes DSM 40736]
gi|302470752|gb|EFL33845.1| ATP-dependent Clp protease ATP-binding subunit [Streptomyces
viridochromogenes DSM 40736]
Length=247
Score = 271 bits (692), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 141/231 (62%), Positives = 177/231 (77%), Gaps = 3/231 (1%)
Query 11 VRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGASWSDIGKSM 70
VRLD+LI AIK+VH + L+QL DAV+AA+HLGE+ADHLIGHFVDQARRSGASW+DIGKSM
Sbjct 11 VRLDDLIAAIKKVHQEPLEQLQDAVIAADHLGEVADHLIGHFVDQARRSGASWTDIGKSM 70
Query 71 GVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASSEITPDHLLLG 130
GVT+QAAQKRFVP+ E+ LD +QGF R+TPRARN V+A+ NAA A ++E P+HL+LG
Sbjct 71 GVTRQAAQKRFVPK-ESADLDPSQGFNRYTPRARNTVMASHNAAKAAHNAEGLPEHLVLG 129
Query 131 VLTDPAALATALLQQQEIDIATLRTAVT--LPPAVTEPPQPIPFSGPARKVLELTFREAL 188
+L +P LA + +Q + + ++R A T LPPAV E P+ +P+ A+KVLELTFREAL
Sbjct 130 LLAEPEGLAAKAIVEQGVSLDSVREAATAALPPAVDEAPELVPYGQAAKKVLELTFREAL 189
Query 189 RLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGAN 239
RLGHNYIGTEH+LLALLE E+G+G L G+ K R E L L + A
Sbjct 190 RLGHNYIGTEHILLALLEHENGEGVLSGLGIGKERTEQYLARVLEKIAEAQ 240
>gi|258655270|ref|YP_003204426.1| Clp domain-containing protein [Nakamurella multipartita DSM 44233]
gi|258558495|gb|ACV81437.1| Clp domain protein [Nakamurella multipartita DSM 44233]
Length=237
Score = 270 bits (691), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 140/228 (62%), Positives = 167/228 (74%), Gaps = 4/228 (1%)
Query 12 RLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGASWSDIGKSMG 71
RLD+LINAI VH+D L+QL+DAVLAA+HLG +ADHLIGHFVDQARRSGASW+ IG SMG
Sbjct 12 RLDDLINAITAVHTDPLEQLTDAVLAADHLGSLADHLIGHFVDQARRSGASWTQIGASMG 71
Query 72 VTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASSEITPDHLLLGV 131
VTKQAAQKRFVPR A +LD QGF FTPRARN +VAAQ+ + ++ P+HLLLG+
Sbjct 72 VTKQAAQKRFVPR--APSLDPQQGFEAFTPRARNTIVAAQSESRERGDDQVRPEHLLLGL 129
Query 132 LTDPAALATALLQQQEIDIATLR--TAVTLPPAVTEPPQPIPFSGPARKVLELTFREALR 189
L++PA LA L +Q + +R T LP P PIP+ A+KVL+LTFREALR
Sbjct 130 LSEPAGLAMKALAEQGLSADRIRAATVAVLPAGPGPSPDPIPYDATAQKVLQLTFREALR 189
Query 190 LGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTG 237
LGHNYIGTEH+LLALLE E G G L GVD+ R EA L+ L L+G
Sbjct 190 LGHNYIGTEHVLLALLEFEGGSGVLAGLGVDRERVEASLLAALGGLSG 237
>gi|297201367|ref|ZP_06918764.1| Clp domain-containing protein [Streptomyces sviceus ATCC 29083]
gi|297147870|gb|EFH28771.1| Clp domain-containing protein [Streptomyces sviceus ATCC 29083]
Length=244
Score = 270 bits (691), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 140/231 (61%), Positives = 171/231 (75%), Gaps = 3/231 (1%)
Query 11 VRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGASWSDIGKSM 70
VRLD+LI AIK+VH + LDQL DAV+AA+HLGE+ADHLIGHFVDQARRSGASW+DIG+SM
Sbjct 11 VRLDDLITAIKKVHVEPLDQLQDAVIAADHLGEVADHLIGHFVDQARRSGASWTDIGRSM 70
Query 71 GVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASSEITPDHLLLG 130
GVT+QAAQKRFVP+ E+ L+++QGF R+T RARN V+AA NAA A + E P+HL+LG
Sbjct 71 GVTRQAAQKRFVPK-ESADLNADQGFSRYTTRARNVVMAAHNAAISAGNPEGRPEHLVLG 129
Query 131 VLTDPAALATALLQQQEIDIATLRTAVT--LPPAVTEPPQPIPFSGPARKVLELTFREAL 188
+L +P LA L Q + + +R A T LPPA E P+ +P+ A+KVLELTFREAL
Sbjct 130 LLAEPEGLAAKALVAQGVTLDAVRRAATDALPPAAEEVPELVPYGSDAKKVLELTFREAL 189
Query 189 RLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGAN 239
RLGHNYIGTEH+LLALLE E G G L GV+K E + LA A
Sbjct 190 RLGHNYIGTEHILLALLEFEHGTGVLSGLGVEKGPVEGAVAKELAGYLKAQ 240
>gi|328884586|emb|CCA57825.1| putative ClpX protein [Streptomyces venezuelae ATCC 10712]
Length=251
Score = 269 bits (688), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 143/239 (60%), Positives = 174/239 (73%), Gaps = 3/239 (1%)
Query 1 MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG 60
M P + PVRLDELI AIK+VH D L+QLS AV+AA+HLG++ADHLIGHFVDQARRSG
Sbjct 1 MTNPVGLSVPVRLDELIEAIKKVHPDALEQLSGAVIAADHLGDVADHLIGHFVDQARRSG 60
Query 61 ASWSDIGKSMGVTKQAAQKRFVPRA-EATTLDSNQGFRRFTPRARNAVVAAQNAAHGAAS 119
ASW+DIG+SMGVT+QAAQKRFVP+ + +D N GF RFTPRAR VVA+Q A A
Sbjct 61 ASWTDIGRSMGVTRQAAQKRFVPKGPDDAQMDPNAGFSRFTPRARKVVVASQEEARAAEH 120
Query 120 SEITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAV--TLPPAVTEPPQPIPFSGPAR 177
+EI P HL+LG+L DP ALA L + +R AV TLPP + P IPF ++
Sbjct 121 AEIVPGHLVLGLLADPEALAARWLTGHGVTAEAVRDAVTPTLPPRAEKIPALIPFDADSK 180
Query 178 KVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLT 236
KVLELTFREALRLGHN++GTEH+LLAL+E EDG G L G+DK+ AE ++ +AS T
Sbjct 181 KVLELTFREALRLGHNFVGTEHILLALMEHEDGTGVLAGLGLDKATAEREIAEAIASAT 239
>gi|111017265|ref|YP_700237.1| ATP-dependent Clp protease ATP-binding subunit [Rhodococcus jostii
RHA1]
gi|110816795|gb|ABG92079.1| probable ATP-dependent Clp protease ATP-binding subunit [Rhodococcus
jostii RHA1]
Length=247
Score = 267 bits (683), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 145/226 (65%), Positives = 171/226 (76%), Gaps = 5/226 (2%)
Query 1 MPEPTPTAYPVRLDELINAIKRVHSDV-LDQLSDAVLAAEHLGEIADHLIGHFVDQARRS 59
M T P+RLDELI+AIK+VH++ L+QL+DAVLAAEHLGE+ADHLIGHFVDQARRS
Sbjct 1 MENSDRTTPPIRLDELIDAIKKVHAEAPLEQLTDAVLAAEHLGELADHLIGHFVDQARRS 60
Query 60 GASWSDIGKSMGVTKQAAQKRFVPR--AEATTLDSNQGFRRFTPRARNAVVAAQNAAHGA 117
GASW++IGKSMGVTKQAAQKRFVP+ +A+ LD NQGF RFTPRAR VV AQN A A
Sbjct 61 GASWTEIGKSMGVTKQAAQKRFVPKDPGQASDLDPNQGFSRFTPRARQVVVVAQNEARAA 120
Query 118 ASSEITPDHLLLGVLTDPAALATALLQQQEIDIATLR--TAVTLPPAVTEPPQPIPFSGP 175
++EI P HL+LG+L DP L + Q + + ++R TLPPA E P +PF
Sbjct 121 HNAEILPQHLVLGLLADPEGLGARAIAAQGVKLDSVRHAATATLPPAAEEVPALVPFDAQ 180
Query 176 ARKVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDK 221
+RK LELTFREALRLGHNYIGTEH+LLALLE+EDG G L GVDK
Sbjct 181 SRKALELTFREALRLGHNYIGTEHILLALLEVEDGVGVLTGLGVDK 226
>gi|290958456|ref|YP_003489638.1| hypothetical protein SCAB_40081 [Streptomyces scabiei 87.22]
gi|260647982|emb|CBG71087.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length=247
Score = 264 bits (675), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 146/236 (62%), Positives = 173/236 (74%), Gaps = 3/236 (1%)
Query 11 VRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGASWSDIGKSM 70
+RLDELI+AIK+VH + LDQL DAV+AA+HLGE+ADHLIGHFVDQARRSGASW++IGKSM
Sbjct 11 IRLDELIDAIKKVHPEPLDQLQDAVIAADHLGEVADHLIGHFVDQARRSGASWTEIGKSM 70
Query 71 GVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASSEITPDHLLLG 130
GVT+QAAQKRFVP+AE LD++QGF RFTPRARN V AA N A + E P HL+LG
Sbjct 71 GVTRQAAQKRFVPKAE-NDLDASQGFSRFTPRARNVVTAAHNEGKAAGAVEGVPAHLVLG 129
Query 131 VLTDPAALATALLQQQEIDIATLR--TAVTLPPAVTEPPQPIPFSGPARKVLELTFREAL 188
+L++P ALA L Q + LR TLPPA E P+ IP+ A+KVLELTFREAL
Sbjct 130 LLSEPEALAAKALAAQGVSPEVLRQAATATLPPAAPEVPELIPYGPEAKKVLELTFREAL 189
Query 189 RLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGANAAGAT 244
RLGHNYIGTEH+LLALLE E+G G L GV K EAD+ L S+ G +
Sbjct 190 RLGHNYIGTEHILLALLEFENGQGVLSGLGVTKEATEADVTAALRSIVQGKGQGQS 245
>gi|318059348|ref|ZP_07978071.1| Clp domain-containing protein [Streptomyces sp. SA3_actG]
gi|318077999|ref|ZP_07985331.1| Clp domain-containing protein [Streptomyces sp. SA3_actF]
Length=253
Score = 263 bits (673), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 141/228 (62%), Positives = 163/228 (72%), Gaps = 5/228 (2%)
Query 1 MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG 60
M E TP VRLD+LI+AIKRVH+ LDQL+DAVLAAEHLGE+ADHLIGHFVDQARRSG
Sbjct 1 MTEQTPAHRTVRLDDLIDAIKRVHTGPLDQLTDAVLAAEHLGEVADHLIGHFVDQARRSG 60
Query 61 ASWSDIGKSMGVTKQAAQKRFVPR--AEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAA 118
ASW+DIG SMGVT+QAAQKRFVP+ E LD QGF R+TPRAR VVA+Q A
Sbjct 61 ASWTDIGTSMGVTRQAAQKRFVPKDSGEVAALDPEQGFSRYTPRARKVVVASQTRAREHG 120
Query 119 SSEITPDHLLLGVLTDPAALATALLQQQEI--DIATLRTAVTLPPAVTEP-PQPIPFSGP 175
+ I P HLLLG+L +P +L +L Q + + LPP E P IPF
Sbjct 121 HTRIAPAHLLLGLLDEPQSLGVVVLADQGVTREAVREAAEAALPPRGEEDLPTLIPFDAA 180
Query 176 ARKVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSR 223
A+K+LELTFREALRLGHNYIGTEHL+LALLE E+GDG L GV+K R
Sbjct 181 AKKILELTFREALRLGHNYIGTEHLVLALLEHENGDGLLAGLGVEKER 228
>gi|257056231|ref|YP_003134063.1| Clp amino terminal domain-containing protein [Saccharomonospora
viridis DSM 43017]
gi|256586103|gb|ACU97236.1| Clp amino terminal domain-containing protein [Saccharomonospora
viridis DSM 43017]
Length=233
Score = 263 bits (671), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 132/215 (62%), Positives = 164/215 (77%), Gaps = 2/215 (0%)
Query 11 VRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGASWSDIGKSM 70
+RLD+LI AI++ +DVL+QL+DAVLAAEHLGE+ADHLIGHFVDQARRSGASW++IGKS+
Sbjct 5 IRLDDLIKAIEKSRTDVLEQLADAVLAAEHLGELADHLIGHFVDQARRSGASWTEIGKSL 64
Query 71 GVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASSEITPDHLLLG 130
GVTKQAAQKRFV ATTLD ++GFRRFTPRAR V+AAQ A A ++ ITP HL+LG
Sbjct 65 GVTKQAAQKRFVSPGRATTLDPSEGFRRFTPRARKVVMAAQQEARSANNASITPVHLILG 124
Query 131 VLTDPAALATALLQQQEIDIATL--RTAVTLPPAVTEPPQPIPFSGPARKVLELTFREAL 188
++ +P +A +Q QE+ + T+ R LP A E P IP+ ARKVLELTFR+AL
Sbjct 125 LVGEPEGVAAVAIQAQEVTLDTVRERALAALPKAEEEVPDLIPYDPDARKVLELTFRQAL 184
Query 189 RLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSR 223
RLGH Y+GTEH+LLAL E E+G G L G+ K +
Sbjct 185 RLGHEYVGTEHILLALSEHENGKGVLSELGLRKEK 219
>gi|336177887|ref|YP_004583262.1| Clp domain-containing protein [Frankia symbiont of Datisca glomerata]
gi|334858867|gb|AEH09341.1| Clp domain protein [Frankia symbiont of Datisca glomerata]
Length=245
Score = 262 bits (670), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 141/245 (58%), Positives = 171/245 (70%), Gaps = 4/245 (1%)
Query 1 MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG 60
M P + P+RLD+LI AIK+VH DVL+QLS AV+AA+ LGE+ADHLIGHFVDQARRSG
Sbjct 1 MANPVTPSVPIRLDDLIQAIKKVHPDVLEQLSSAVVAADRLGELADHLIGHFVDQARRSG 60
Query 61 ASWSDIGKSMGVTKQAAQKRFVPRA-EATTLDSNQGFRRFTPRARNAVVAAQNAAHGAAS 119
ASW++IG+SMGV+KQAAQKR ++ EA LD +QGF RFTPRARN V+AAQN A +
Sbjct 61 ASWTEIGRSMGVSKQAAQKRSAKKSDEAADLDPSQGFGRFTPRARNVVMAAQNEAQRSGH 120
Query 120 SEITPDHLLLGVLTDPAALATALLQ---QQEIDIATLRTAVTLPPAVTEPPQPIPFSGPA 176
EI P+HL+LG+L DP ALA +LQ + A P P +PF A
Sbjct 121 HEIRPEHLILGLLVDPQALAVTILQVLGAGAEAVRAAAAAALPAPPGGAAPALVPFDTAA 180
Query 177 RKVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLT 236
+K LELTFREALRLGHNY+GTEH+LLALLE EDGDG L GVD++ E L T LA++
Sbjct 181 KKALELTFREALRLGHNYVGTEHILLALLEREDGDGVLSGLGVDRAAVETQLATALAAIV 240
Query 237 GANAA 241
A
Sbjct 241 AGGKA 245
>gi|333022575|ref|ZP_08450639.1| hypothetical protein STTU_0079 [Streptomyces sp. Tu6071]
gi|332742427|gb|EGJ72868.1| hypothetical protein STTU_0079 [Streptomyces sp. Tu6071]
Length=253
Score = 262 bits (669), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 141/228 (62%), Positives = 162/228 (72%), Gaps = 5/228 (2%)
Query 1 MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSG 60
M E TP VRLD+LI+AIKRVH LDQL+DAVLAAEHLGE+ADHLIGHFVDQARRSG
Sbjct 1 MTEQTPAHRAVRLDDLIDAIKRVHIGPLDQLTDAVLAAEHLGEVADHLIGHFVDQARRSG 60
Query 61 ASWSDIGKSMGVTKQAAQKRFVPR--AEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAA 118
ASW+DIG SMGVT+QAAQKRFVP+ E LD QGF R+TPRAR VVA+Q A
Sbjct 61 ASWTDIGTSMGVTRQAAQKRFVPKDSGEVAALDPEQGFSRYTPRARKVVVASQTQAREHG 120
Query 119 SSEITPDHLLLGVLTDPAALATALLQQQEI--DIATLRTAVTLPPAVTEP-PQPIPFSGP 175
+ I P HLLLG+L +P +L +L Q + + LPP E P IPF
Sbjct 121 HTRIAPAHLLLGLLDEPQSLGVVVLADQGVTREAVREAAEAALPPRGEEDLPTLIPFDAA 180
Query 176 ARKVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSR 223
A+K+LELTFREALRLGHNYIGTEHL+LALLE E+GDG L GV+K R
Sbjct 181 AKKILELTFREALRLGHNYIGTEHLVLALLEHENGDGLLAGLGVEKER 228
>gi|291006122|ref|ZP_06564095.1| putative Clp protease subunit [Saccharopolyspora erythraea NRRL
2338]
Length=237
Score = 262 bits (669), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 141/213 (67%), Positives = 164/213 (77%), Gaps = 2/213 (0%)
Query 11 VRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGASWSDIGKSM 70
VRLD+LI AIK+VH DVL+QLS AV+A EHLGE+ADHLIGHFVDQARRSGASW++IG+SM
Sbjct 7 VRLDDLIEAIKKVHPDVLEQLSGAVVAGEHLGEVADHLIGHFVDQARRSGASWTEIGRSM 66
Query 71 GVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASSEITPDHLLLG 130
GV+KQAAQKRFV + EA LD +QGF RFT RAR+ VVAAQ+ A A++ EI P HL+L
Sbjct 67 GVSKQAAQKRFVAKGEALDLDPSQGFSRFTDRARSVVVAAQSQARAASNDEIQPAHLVLA 126
Query 131 VLTDPAALATALLQQQ--EIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVLELTFREAL 188
+L + ALA + Q E++ A + LPPAV P IPF ARK LELTFREAL
Sbjct 127 LLGESEALAAKAVVAQGVELEAAKREVSAALPPAVERVPDLIPFDPQARKALELTFREAL 186
Query 189 RLGHNYIGTEHLLLALLELEDGDGPLHRSGVDK 221
RLGHNYIGTEH+LLALLELEDG G L R GVDK
Sbjct 187 RLGHNYIGTEHILLALLELEDGAGVLSRLGVDK 219
>gi|302537311|ref|ZP_07289653.1| Clp domain-containing protein [Streptomyces sp. C]
gi|302446206|gb|EFL18022.1| Clp domain-containing protein [Streptomyces sp. C]
Length=251
Score = 262 bits (669), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 149/244 (62%), Positives = 184/244 (76%), Gaps = 5/244 (2%)
Query 3 EPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGAS 62
EP PVRLD+LI AIK+VHSD L+QLSDAV+AAEHLG++ADHLIGHFVDQARRSGAS
Sbjct 7 EPVRITNPVRLDDLIEAIKKVHSDTLEQLSDAVVAAEHLGDVADHLIGHFVDQARRSGAS 66
Query 63 WSDIGKSMGVTKQAAQKRFVPRAEAT---TLDSNQGFRRFTPRARNAVVAAQNAAHGAAS 119
W+DIG+SMGVT+QAAQKRFVP+A+ LD N GF RFTPRARN V++AQN A A +
Sbjct 67 WTDIGRSMGVTRQAAQKRFVPKADKDGDPGLDPNAGFGRFTPRARNVVISAQNEARAAGN 126
Query 120 SEITPDHLLLGVLTDPAALATALLQQQEIDIATLRTA--VTLPPAVTEPPQPIPFSGPAR 177
+EI +HLLLG+L + LA + + + LR+A TLPPA E P +PF A+
Sbjct 127 AEIRTEHLLLGLLGETEGLAAHVFTSRGVAPDELRSAATATLPPAQEELPALVPFDANAK 186
Query 178 KVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTG 237
KVLELTFREALRLGH Y+GTEH+LLALLE E+G+GPL +G+ K+ AEA + LA++ G
Sbjct 187 KVLELTFREALRLGHGYVGTEHILLALLEQENGEGPLSAAGLGKAAAEATVTEALAAVLG 246
Query 238 ANAA 241
+AA
Sbjct 247 GDAA 250
>gi|311894311|dbj|BAJ26719.1| hypothetical protein KSE_08820 [Kitasatospora setae KM-6054]
Length=244
Score = 262 bits (669), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 140/241 (59%), Positives = 176/241 (74%), Gaps = 5/241 (2%)
Query 1 MPEPTPTAYP-VRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRS 59
M + T P +RLD+LI IK + + LDQLS+AVL A+HLG++ADHLIGHFVDQARRS
Sbjct 1 MADTTGAKKPSIRLDDLIEGIKNSYPEALDQLSNAVLVADHLGDVADHLIGHFVDQARRS 60
Query 60 GASWSDIGKSMGVTKQAAQKRFVPR--AEATTLDSNQGFRRFTPRARNAVVAAQNAAHGA 117
GASW+DIG+SMGVT+QAAQKRFVP+ E T +D+ QGF RFTPRARN V+AA AA A
Sbjct 61 GASWTDIGRSMGVTRQAAQKRFVPKDPGEVTEIDTAQGFNRFTPRARNVVMAAHQAAKDA 120
Query 118 ASSEITPDHLLLGVLTDPAALATALLQQQEIDIATLR--TAVTLPPAVTEPPQPIPFSGP 175
+ E+ +HL+LG+L +P LATA L + + T+R LPPAV + P+ +P+
Sbjct 121 RNDEVRTEHLVLGLLAEPEGLATAYLVTSGVPLDTVREAALAALPPAVEDAPELVPYDAG 180
Query 176 ARKVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASL 235
A+K LELT REALRLGHNY+GTEHLLLAL+E E GDG L G+DK+ AE + + TLA L
Sbjct 181 AKKALELTMREALRLGHNYVGTEHLLLALIEHEAGDGILTSLGLDKTAAETEFLATLAQL 240
Query 236 T 236
T
Sbjct 241 T 241
>gi|134099843|ref|YP_001105504.1| putative Clp protease subunit [Saccharopolyspora erythraea NRRL
2338]
gi|133912466|emb|CAM02579.1| putative Clp protease subunit [Saccharopolyspora erythraea NRRL
2338]
Length=235
Score = 261 bits (668), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 141/213 (67%), Positives = 164/213 (77%), Gaps = 2/213 (0%)
Query 11 VRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGASWSDIGKSM 70
VRLD+LI AIK+VH DVL+QLS AV+A EHLGE+ADHLIGHFVDQARRSGASW++IG+SM
Sbjct 5 VRLDDLIEAIKKVHPDVLEQLSGAVVAGEHLGEVADHLIGHFVDQARRSGASWTEIGRSM 64
Query 71 GVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASSEITPDHLLLG 130
GV+KQAAQKRFV + EA LD +QGF RFT RAR+ VVAAQ+ A A++ EI P HL+L
Sbjct 65 GVSKQAAQKRFVAKGEALDLDPSQGFSRFTDRARSVVVAAQSQARAASNDEIQPAHLVLA 124
Query 131 VLTDPAALATALLQQQ--EIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVLELTFREAL 188
+L + ALA + Q E++ A + LPPAV P IPF ARK LELTFREAL
Sbjct 125 LLGESEALAAKAVVAQGVELEAAKREVSAALPPAVERVPDLIPFDPQARKALELTFREAL 184
Query 189 RLGHNYIGTEHLLLALLELEDGDGPLHRSGVDK 221
RLGHNYIGTEH+LLALLELEDG G L R GVDK
Sbjct 185 RLGHNYIGTEHILLALLELEDGAGVLSRLGVDK 217
>gi|302559314|ref|ZP_07311656.1| Clp amino domain-containing protein [Streptomyces griseoflavus
Tu4000]
gi|302476932|gb|EFL40025.1| Clp amino domain-containing protein [Streptomyces griseoflavus
Tu4000]
Length=249
Score = 261 bits (666), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 133/226 (59%), Positives = 166/226 (74%), Gaps = 3/226 (1%)
Query 11 VRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGASWSDIGKSM 70
VRLD+LI AIK+VH + L+QL DAVLA EHLG++ADHLIGHFVDQARRSGASW+DIG+SM
Sbjct 11 VRLDDLIAAIKKVHEEPLEQLQDAVLAGEHLGDVADHLIGHFVDQARRSGASWTDIGRSM 70
Query 71 GVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASSEITPDHLLLG 130
GVT+QAAQKRFVP+ E LD +QGF R+TPRARN V+AA A A +E P+HL+LG
Sbjct 71 GVTRQAAQKRFVPK-EGNDLDPSQGFNRYTPRARNTVMAAHQEAQTAHHAEGLPEHLVLG 129
Query 131 VLTDPAALATALLQQQEIDI--ATLRTAVTLPPAVTEPPQPIPFSGPARKVLELTFREAL 188
+L +P LA + +Q + + LPPAV + P+ +P+ A+KVLELTFREAL
Sbjct 130 LLAEPQGLAVKAITEQGVTVPAVAEAARAALPPAVEDAPELVPYGPAAKKVLELTFREAL 189
Query 189 RLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLAS 234
RLGHNYIGTEH+LLALLE E+G+G L G+ K+ E + LA
Sbjct 190 RLGHNYIGTEHILLALLEHENGEGLLSGLGITKAATERYVADMLAQ 235
Lambda K H
0.316 0.131 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 365242488240
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40